Citrus Sinensis ID: 024451

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRRVL
Secondary Structure (PSIPRED)
cEEEEEccccEEEEccccccEEEEEcccccccccccccccccccccccEEEEEEEcccccEEEEccccccEEEEEcccccEEEEccccccccccccEEEEEEccccccEEEEccccccEEEEEcccccccccccccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEEccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccccccEEEEEEcccccEEEEccccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
EEEEEcccccEEEEEEcccEEEEEEccccccccccccEEEEEccccccEEEEEEcccEccEEEEEEccccEEEEEccccEEEEEEcccccccccccEEEEEEccccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEccccccccEcEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccccccEEEEEEccccccEEEEEccccEEEEEcccccEcc
Coil and Loop (DISEMBL)
mtcafsptgqsvacggldsvcsifnlnsptdkdgnlpvsrmlsghkgyvsccqyvpdedthlitssgdqtcvLWDIttglrtsvfggefqsghtaDVLSVSisgsnsrmfvsgscdstarLWDTRVASRAVRtfhghegdvntvkffpdgnrfgtgsddgtcrlfdirtgHQLQVYYQQhgeneiphvtSIAFSISGRLLfagysngdcyVWDTLLAKVVLNLGslqnshegritclglsadgsalctgswdtnlKIWAFGGYRRVL
Flexible Loop (DISEMBL)
mtcafsptgqsvacggLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVrtfhghegdvntvkffpdgNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRRVL
Low Complexity Region (SEG)
MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRRVL
Disordered region (IsUnstruct)
**********SVACGGLDSVCSIFNLNS*******LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR***
Disordered Region (DISOPRED)
MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRRVL
Disordered Region (DISEMBL)
*********QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRRVL
Disordered Region (DISPRO)
MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRRVL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRRVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
P93398	377	Guanine nucleotide-bindin	N/A	no	1.0	0.708	0.913	1e-143
P93397	377	Guanine nucleotide-bindin	N/A	no	1.0	0.708	0.906	1e-142
P93563	377	Guanine nucleotide-bindin	N/A	no	0.951	0.673	0.902	1e-141
Q40507	375	Guanine nucleotide-bindin	N/A	no	0.925	0.658	0.912	1e-140
P93339	377	Guanine nucleotide-bindin	N/A	no	1.0	0.708	0.883	1e-137
P49177	377	Guanine nucleotide-bindin	yes	no	0.996	0.705	0.835	1e-128
P49178	380	Guanine nucleotide-bindin	N/A	no	1.0	0.702	0.795	1e-128
Q40687	380	Guanine nucleotide-bindin	yes	no	1.0	0.702	0.810	1e-126
O14435	359	Guanine nucleotide-bindin	N/A	no	0.910	0.676	0.526	1e-71
Q6PH57	340	Guanine nucleotide-bindin	yes	no	0.895	0.702	0.511	1e-69

>sp|P93398|GBB2_TOBAC Guanine nucleotide-binding protein subunit beta-2 OS=Nicotiana tabacum PE=2 SV=1

 Score =  508 bits (1308), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 244/267 (91%), Positives = 256/267 (95%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAFSP+GQSVACGGLDSVCSIFNLNSP DKDGN PVSRMLSGHKGYVS CQYVPDEDT
Sbjct: 111 MTCAFSPSGQSVACGGLDSVCSIFNLNSPIDKDGNHPVSRMLSGHKGYVSSCQYVPDEDT 170

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           H+ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV SVSIS SN R+FVSGSCDSTAR
Sbjct: 171 HVITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVQSVSISSSNPRLFVSGSCDSTAR 230

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWDTRVASRA RTF+GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ H
Sbjct: 231 LWDTRVASRAQRTFYGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQPH 290

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
           G+ +IPHVTS+AFSISGRLLF GYSNGDCYVWDTLLAKVVLNLG++QNSHEGRI+CLGLS
Sbjct: 291 GDGDIPHVTSMAFSISGRLLFVGYSNGDCYVWDTLLAKVVLNLGAVQNSHEGRISCLGLS 350

Query: 241 ADGSALCTGSWDTNLKIWAFGGYRRVL 267
           ADGSALCTGSWDTNLKIWAFGG+R V+
Sbjct: 351 ADGSALCTGSWDTNLKIWAFGGHRSVI 377

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
Nicotiana tabacum (taxid: 4097)

>sp|P93397|GBB1_TOBAC Guanine nucleotide-binding protein subunit beta-1 OS=Nicotiana tabacum PE=1 SV=1

 Score =  503 bits (1296), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/267 (90%), Positives = 254/267 (95%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAFSP+GQSVACGGLDSVCSIFNLNSP DKDGN PVSRMLSGHKGYVS CQYVPDEDT
Sbjct: 111 MTCAFSPSGQSVACGGLDSVCSIFNLNSPIDKDGNHPVSRMLSGHKGYVSSCQYVPDEDT 170

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV SVSIS SN R+FVSGSCD+TAR
Sbjct: 171 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVQSVSISSSNPRLFVSGSCDTTAR 230

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWDTRVASRA RTF+GHEGDVNTVKFFPDGNRFGTGS+DGTCRLFDIRT HQLQVYYQ H
Sbjct: 231 LWDTRVASRAQRTFYGHEGDVNTVKFFPDGNRFGTGSEDGTCRLFDIRTEHQLQVYYQPH 290

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
           G+ +IPHVTS+AFSISGRLLF GYSNGDCYVWDTLLAKVVLNLG +QNSHEGRI+CLGLS
Sbjct: 291 GDGDIPHVTSMAFSISGRLLFVGYSNGDCYVWDTLLAKVVLNLGGVQNSHEGRISCLGLS 350

Query: 241 ADGSALCTGSWDTNLKIWAFGGYRRVL 267
           ADGSALCTGSWDTNLKIWAFGG+R V+
Sbjct: 351 ADGSALCTGSWDTNLKIWAFGGHRSVI 377

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Nicotiana tabacum (taxid: 4097)

>sp|P93563|GBB_SOLTU Guanine nucleotide-binding protein subunit beta OS=Solanum tuberosum GN=GB1 PE=2 SV=1

 Score =  501 bits (1289), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/267 (90%), Positives = 253/267 (94%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAFSP+GQSVACGGLDS CSIFNLNSP DKDG  PVSRMLSGHKGYVS CQYVPDEDT
Sbjct: 111 MTCAFSPSGQSVACGGLDSACSIFNLNSPIDKDGIHPVSRMLSGHKGYVSSCQYVPDEDT 170

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS SN ++FVSGSCD+TAR
Sbjct: 171 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISSSNPKLFVSGSCDTTAR 230

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWDTRVASRA RTFHGHE DVNTVKFFPDGNRFGTGSDDG+CRLFDIRTGHQLQVY Q H
Sbjct: 231 LWDTRVASRAQRTFHGHESDVNTVKFFPDGNRFGTGSDDGSCRLFDIRTGHQLQVYNQPH 290

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
           G+ +IPHVTS+AFSISGRLLF GYSNGDCYVWDTLLAKVVLNLGS+QNSHEGRI+CLGLS
Sbjct: 291 GDGDIPHVTSMAFSISGRLLFVGYSNGDCYVWDTLLAKVVLNLGSVQNSHEGRISCLGLS 350

Query: 241 ADGSALCTGSWDTNLKIWAFGGYRRVL 267
           ADGSALCTGSWDTNLKIWAFGG+R V+
Sbjct: 351 ADGSALCTGSWDTNLKIWAFGGHRSVV 377

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Solanum tuberosum (taxid: 4113)

>sp|Q40507|GBB3_TOBAC Guanine nucleotide-binding protein subunit beta OS=Nicotiana tabacum PE=2 SV=1

 Score =  498 bits (1282), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/262 (91%), Positives = 250/262 (95%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAFSP+GQSVACGGLDSVCSI+NLNSP DKDGN PVSRMLSGHKGYVS CQYVPDEDT
Sbjct: 111 MTCAFSPSGQSVACGGLDSVCSIYNLNSPIDKDGNHPVSRMLSGHKGYVSSCQYVPDEDT 170

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV SVSIS SN R+FVSGSCD+TAR
Sbjct: 171 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVQSVSISSSNPRLFVSGSCDTTAR 230

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWD RVASRA RTF+GHEGDVNTVKFFPDGNRFGTGS+DGTCRLFDIRTGHQLQVYYQ H
Sbjct: 231 LWDNRVASRAQRTFYGHEGDVNTVKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYYQPH 290

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
           G+ +IPHVTS+AFSISGRLLF GYSNGDCYVWDTLLAKVVLNLG +QNSHEGRI+CLGLS
Sbjct: 291 GDGDIPHVTSMAFSISGRLLFVGYSNGDCYVWDTLLAKVVLNLGGVQNSHEGRISCLGLS 350

Query: 241 ADGSALCTGSWDTNLKIWAFGG 262
           ADGSALCTGSWDTNLKIWAFGG
Sbjct: 351 ADGSALCTGSWDTNLKIWAFGG 372

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Nicotiana tabacum (taxid: 4097)

>sp|P93339|GBB_NICPL Guanine nucleotide-binding protein subunit beta OS=Nicotiana plumbaginifolia PE=2 SV=1

 Score =  489 bits (1258), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/267 (88%), Positives = 249/267 (93%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAFSP+G SVACGGLDSVCSIFNLNSP DKDGN PVSRMLSGHKGYVS CQYVPDEDT
Sbjct: 111 MTCAFSPSGHSVACGGLDSVCSIFNLNSPIDKDGNHPVSRMLSGHKGYVSSCQYVPDEDT 170

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           HLITSSGDQTCVLWDITTGLRTSVFGGEFQ GHTADV SVSIS SN R+FVSGSCD+TAR
Sbjct: 171 HLITSSGDQTCVLWDITTGLRTSVFGGEFQFGHTADVQSVSISSSNPRLFVSGSCDTTAR 230

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWDTRVASRA RTF+ HEGDVNTVKFFPDGNRFGTGS+DGTCRLFDIRTGHQLQVYYQ H
Sbjct: 231 LWDTRVASRAQRTFYCHEGDVNTVKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYYQPH 290

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
           G+ +IPHVTS+AFSISGRLLF  YSNGDCYVWDTLLAKVVLNLG++QNSHEG I+CLGLS
Sbjct: 291 GDGDIPHVTSMAFSISGRLLFVRYSNGDCYVWDTLLAKVVLNLGAVQNSHEGXISCLGLS 350

Query: 241 ADGSALCTGSWDTNLKIWAFGGYRRVL 267
           ADG  LCTGSWDTNLKIWAFGG+R V+
Sbjct: 351 ADGXXLCTGSWDTNLKIWAFGGHRSVI 377

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|P49177|GBB_ARATH Guanine nucleotide-binding protein subunit beta OS=Arabidopsis thaliana GN=GB1 PE=1 SV=1

 Score =  458 bits (1179), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/268 (83%), Positives = 244/268 (91%), Gaps = 2/268 (0%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAFSP GQSVACGGLDSVCSIF+L+S  DKDG +PVSRML+GH+GYVSCCQYVP+ED 
Sbjct: 111 MTCAFSPNGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDA 170

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           HLITSSGDQTC+LWD+TTGL+TSVFGGEFQSGHTADVLSVSISGSN   F+SGSCDSTAR
Sbjct: 171 HLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTAR 230

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWDTR ASRAVRTFHGHEGDVNTVKFFPDG RFGTGSDDGTCRL+DIRTGHQLQV YQ H
Sbjct: 231 LWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQLQV-YQPH 289

Query: 181 GENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239
           G+ E   VTSIAFS+SGRLLFAGY SN  CYVWDTLL +VVL+LG  Q+SH  RI+CLGL
Sbjct: 290 GDGENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGL 349

Query: 240 SADGSALCTGSWDTNLKIWAFGGYRRVL 267
           SADGSALCTGSWD+NLKIWAFGG+RRV+
Sbjct: 350 SADGSALCTGSWDSNLKIWAFGGHRRVI 377

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Together with GCR1 and GPA1, acts as a negative regulator of ABA during seed germination and early seedling development.

Arabidopsis thaliana (taxid: 3702)

>sp|P49178|GBB_MAIZE Guanine nucleotide-binding protein subunit beta OS=Zea mays GN=GB1 PE=2 SV=1

 Score =  458 bits (1178), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 214/269 (79%), Positives = 244/269 (90%), Gaps = 2/269 (0%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           M CAF+P GQSVACGGLDS CSIFNLNS  D+DGN+PVSR+L+GHKGYVS CQYVPD++T
Sbjct: 112 MACAFAPNGQSVACGGLDSACSIFNLNSQADRDGNMPVSRILTGHKGYVSSCQYVPDQET 171

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
            LITSSGDQTCVLWD+TTG R S+FGGEF SGHTADV SVSI+ SN+ MFVSGSCD+T R
Sbjct: 172 RLITSSGDQTCVLWDVTTGQRISIFGGEFPSGHTADVQSVSINSSNTNMFVSGSCDTTVR 231

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ- 179
           LWD R+ASRAVRT+HGHE DVN+VKFFPDG+RFGTGSDDGTCRLFD+RTGHQLQVY ++ 
Sbjct: 232 LWDIRIASRAVRTYHGHEDDVNSVKFFPDGHRFGTGSDDGTCRLFDMRTGHQLQVYSREP 291

Query: 180 -HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238
               NE+P VTSIAFSISGRLLFAGYSNGDCYVWDTLLA+VVLNLG+LQNSH+GRI+CLG
Sbjct: 292 DRNSNELPTVTSIAFSISGRLLFAGYSNGDCYVWDTLLAEVVLNLGNLQNSHDGRISCLG 351

Query: 239 LSADGSALCTGSWDTNLKIWAFGGYRRVL 267
           +S+DGSALCTGSWD NLKIWAF G+R+++
Sbjct: 352 MSSDGSALCTGSWDKNLKIWAFSGHRKIV 380

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Zea mays (taxid: 4577)

>sp|Q40687|GBB_ORYSJ Guanine nucleotide-binding protein subunit beta OS=Oryza sativa subsp. japonica GN=Os03g0669200 PE=1 SV=1

 Score =  450 bits (1158), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/269 (81%), Positives = 247/269 (91%), Gaps = 2/269 (0%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAF+P GQSVACGGLDS CSIFNLNS  D+DGN+PVSR+L+GHKGYVS CQYVPD++T
Sbjct: 112 MTCAFAPNGQSVACGGLDSACSIFNLNSQADRDGNIPVSRILTGHKGYVSSCQYVPDQET 171

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
            LITSSGDQTCVLWD+TTG R S+FGGEF SGHTADVLS+SI+ SNS MFVSGSCD+T R
Sbjct: 172 RLITSSGDQTCVLWDVTTGQRISIFGGEFPSGHTADVLSLSINSSNSNMFVSGSCDATVR 231

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ- 179
           LWD R+ASRAVRT+HGHEGD+N+VKFFPDG RFGTGSDDGTCRLFD+RTGHQLQVY ++ 
Sbjct: 232 LWDIRIASRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDVRTGHQLQVYSREP 291

Query: 180 -HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238
              +NE+P VTSIAFSISGRLLFAGYSNGDCYVWDTLLA+VVLNLG+LQNSHEGRI+CLG
Sbjct: 292 DRNDNELPTVTSIAFSISGRLLFAGYSNGDCYVWDTLLAEVVLNLGNLQNSHEGRISCLG 351

Query: 239 LSADGSALCTGSWDTNLKIWAFGGYRRVL 267
           LS+DGSALCTGSWD NLKIWAF G+R+++
Sbjct: 352 LSSDGSALCTGSWDKNLKIWAFSGHRKIV 380

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O14435|GBB_CRYPA Guanine nucleotide-binding protein subunit beta OS=Cryphonectria parasitica GN=GB-1 PE=3 SV=1

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/260 (52%), Positives = 185/260 (71%), Gaps = 17/260 (6%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCA++P+G  VACGGLD++CSI+NLN   ++DG   V+R LSGH GY+SCC+++ D   
Sbjct: 117 MTCAYAPSGNYVACGGLDNICSIYNLNQ--NRDGPTRVARELSGHAGYLSCCRFINDRS- 173

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
            ++TSSGD TC+ WDI TG +   F     + H  DV+S+S++ +N   F+SG+CD+ A+
Sbjct: 174 -ILTSSGDMTCMKWDIETGTKQIEF-----ADHLGDVMSISLNPTNQNTFISGACDAFAK 227

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWD R A +AV+TF GHE D+N ++FFPDG+ F TGSDD TCRLFDIR   +L VY    
Sbjct: 228 LWDIR-AGKAVQTFAGHESDINAIQFFPDGHSFVTGSDDATCRLFDIRADRELNVY---G 283

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
            E+ +  +TS+A S+SGRLLFAGY + +C VWD    + V   GSL   HE R++CLG+S
Sbjct: 284 SESILCGITSVATSVSGRLLFAGYDDFECKVWDVTRGEKV---GSLV-GHENRVSCLGVS 339

Query: 241 ADGSALCTGSWDTNLKIWAF 260
            DG +LCTGSWD+ LKIWA+
Sbjct: 340 NDGISLCTGSWDSLLKIWAY 359

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Cryphonectria parasitica (taxid: 5116)

>sp|Q6PH57|GBB1_DANRE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Danio rerio GN=gnb1 PE=2 SV=1

 Score =  263 bits (671), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/258 (51%), Positives = 184/258 (71%), Gaps = 19/258 (7%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D 
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 155

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
            ++TSSGD TC LWDI TG +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTF-----AGHTGDVMSLSLA-PDTRLFVSGACDASAK 209

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWD R      +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R   +L VY    
Sbjct: 210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMVYSH-- 266

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
            +N I  +TS+AFS SGRLL AGY + +C VWD L A    +   +   H+ R++CLG++
Sbjct: 267 -DNIICGITSVAFSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVT 321

Query: 241 ADGSALCTGSWDTNLKIW 258
            DG A+ TGSWD+ LKIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
224080325	377	predicted protein [Populus trichocarpa]	1.0	0.708	0.955	1e-148
224103427	377	predicted protein [Populus trichocarpa]	1.0	0.708	0.955	1e-148
255536823	377	guanine nucleotide-binding protein beta,	1.0	0.708	0.940	1e-147
359475308	377	PREDICTED: guanine nucleotide-binding pr	1.0	0.708	0.940	1e-146
359807520	377	uncharacterized protein LOC100811645 [Gl	0.996	0.705	0.932	1e-145
356538779	377	PREDICTED: guanine nucleotide-binding pr	0.992	0.702	0.935	1e-144
356517086	373	PREDICTED: guanine nucleotide-binding pr	1.0	0.715	0.921	1e-144
356517084	377	PREDICTED: guanine nucleotide-binding pr	1.0	0.708	0.921	1e-144
388491282	377	unknown [Lotus japonicus]	1.0	0.708	0.921	1e-143
147797562	366	hypothetical protein VITISV_027042 [Viti	0.996	0.726	0.921	1e-143

>gi|224080325|ref|XP_002306098.1| predicted protein [Populus trichocarpa] gi|222849062|gb|EEE86609.1| predicted protein [Populus trichocarpa]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/267 (95%), Positives = 262/267 (98%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVS CQYVPDEDT
Sbjct: 111 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSSCQYVPDEDT 170

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           HLITSSGDQTCVLWDITTG+RTSVFGGEFQSGHTADVLSVSI+GSNSRMFVSGSCDSTAR
Sbjct: 171 HLITSSGDQTCVLWDITTGIRTSVFGGEFQSGHTADVLSVSINGSNSRMFVSGSCDSTAR 230

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWDTRVASRAVRTFHGHEGDVN VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY QH
Sbjct: 231 LWDTRVASRAVRTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYHQH 290

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
           G+ EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA+ VLNLGSLQNSHEGRITCLGLS
Sbjct: 291 GDTEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAEAVLNLGSLQNSHEGRITCLGLS 350

Query: 241 ADGSALCTGSWDTNLKIWAFGGYRRVL 267
           ADGSALCTGSWDTNLKIWAFGG+R+V+
Sbjct: 351 ADGSALCTGSWDTNLKIWAFGGHRQVI 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103427|ref|XP_002313052.1| predicted protein [Populus trichocarpa] gi|222849460|gb|EEE87007.1| predicted protein [Populus trichocarpa]

 Score =  528 bits (1360), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/267 (95%), Positives = 262/267 (98%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAFSP GQSVACGGLDSVCSIFNLNSPTDKDGNL VSRMLSGHKGYVS CQYVPDEDT
Sbjct: 111 MTCAFSPAGQSVACGGLDSVCSIFNLNSPTDKDGNLTVSRMLSGHKGYVSSCQYVPDEDT 170

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR
Sbjct: 171 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 230

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWDTRVASRAVRTFHGHEGDVN VKFFPDGNRFGTGSDDGTCRLFD+RTGHQLQVYYQQH
Sbjct: 231 LWDTRVASRAVRTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDVRTGHQLQVYYQQH 290

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
           G+NEI HVTSIAFSISGRLLFAGYSNGDCYVWDTLLA+VVLNLGSLQNSHEGRI+CLGLS
Sbjct: 291 GDNEIAHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAEVVLNLGSLQNSHEGRISCLGLS 350

Query: 241 ADGSALCTGSWDTNLKIWAFGGYRRVL 267
           ADGSALCTGSWDTNLKIWAFGG+R+V+
Sbjct: 351 ADGSALCTGSWDTNLKIWAFGGHRKVI 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536823|ref|XP_002509478.1| guanine nucleotide-binding protein beta, putative [Ricinus communis] gi|223549377|gb|EEF50865.1| guanine nucleotide-binding protein beta, putative [Ricinus communis]

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 251/267 (94%), Positives = 264/267 (98%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAFSPTGQSVACGGLDSVCSIFNLNSPT+KDGNLPVS+MLSGHKGYVS CQYVPDEDT
Sbjct: 111 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTEKDGNLPVSKMLSGHKGYVSACQYVPDEDT 170

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI+GSNSRMFVSGSCDSTAR
Sbjct: 171 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSINGSNSRMFVSGSCDSTAR 230

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWDTRVASRAVRTFHGHEGDV+ VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH
Sbjct: 231 LWDTRVASRAVRTFHGHEGDVSAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 290

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
            +NE+PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA+VVL+LGSLQNSHEGRI+CLGLS
Sbjct: 291 NDNEVPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAQVVLDLGSLQNSHEGRISCLGLS 350

Query: 241 ADGSALCTGSWDTNLKIWAFGGYRRVL 267
           ADGSALCTGS+DTNLKIWAFGG+R+V+
Sbjct: 351 ADGSALCTGSYDTNLKIWAFGGHRKVI 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475308|ref|XP_003631647.1| PREDICTED: guanine nucleotide-binding protein subunit beta-2-like [Vitis vinifera] gi|297741450|emb|CBI32581.3| unnamed protein product [Vitis vinifera]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/267 (94%), Positives = 262/267 (98%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAFSP+GQSVACGGLDSVCSIFNLNSPTDKDGNL +S+MLSGHKGYVS CQYVPDEDT
Sbjct: 111 MTCAFSPSGQSVACGGLDSVCSIFNLNSPTDKDGNLAMSKMLSGHKGYVSSCQYVPDEDT 170

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD+TAR
Sbjct: 171 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDATAR 230

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWDTR ASRAVRTFHGHEGDVNTV+FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ+H
Sbjct: 231 LWDTRAASRAVRTFHGHEGDVNTVRFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQEH 290

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
           G+NE PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH+ RI+CLGLS
Sbjct: 291 GDNEAPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHDSRISCLGLS 350

Query: 241 ADGSALCTGSWDTNLKIWAFGGYRRVL 267
           ADGSALCTGSWDTNLKIWAFGG+RRV+
Sbjct: 351 ADGSALCTGSWDTNLKIWAFGGHRRVI 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807520|ref|NP_001240891.1| uncharacterized protein LOC100811645 [Glycine max] gi|255641913|gb|ACU21225.1| unknown [Glycine max]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 248/266 (93%), Positives = 261/266 (98%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAFSPTGQSVACGGLDSVCS+FNLNSPTD+DGNL VSRMLSGHKGYVS CQYVPDEDT
Sbjct: 111 MTCAFSPTGQSVACGGLDSVCSLFNLNSPTDRDGNLAVSRMLSGHKGYVSSCQYVPDEDT 170

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           HLIT SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS+SI+GSNSRMFVSGSCDSTAR
Sbjct: 171 HLITGSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDSTAR 230

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWDTRVASRAV+TFHGH+GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY++QH
Sbjct: 231 LWDTRVASRAVQTFHGHQGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYHRQH 290

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
           G+NE  HVTSIAFS+SGRLLFAGY+NGDCYVWDTLLAKVVLNLGSLQN+HEGRI+CLGLS
Sbjct: 291 GDNEAAHVTSIAFSMSGRLLFAGYTNGDCYVWDTLLAKVVLNLGSLQNTHEGRISCLGLS 350

Query: 241 ADGSALCTGSWDTNLKIWAFGGYRRV 266
           ADGSALCTGSWDTNLKIWAFGGYRRV
Sbjct: 351 ADGSALCTGSWDTNLKIWAFGGYRRV 376

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538779|ref|XP_003537878.1| PREDICTED: guanine nucleotide-binding protein subunit beta-2-like [Glycine max]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/265 (93%), Positives = 258/265 (97%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVS CQYVPDEDT
Sbjct: 111 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSSCQYVPDEDT 170

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           HLIT SGDQTCVLWDITTGL+TSVFGGEFQSGHTADVLS+SI+GSNSRMFVSGSCD+TAR
Sbjct: 171 HLITGSGDQTCVLWDITTGLKTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDATAR 230

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWDTRVASRAVRTFHGHEGDVN VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH
Sbjct: 231 LWDTRVASRAVRTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 290

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
            +NEIP VTSIAFS SGRLLFAGY+NGDCYVWDTLLAKVVLN+GSLQ+SHE RI+CLGLS
Sbjct: 291 SDNEIPPVTSIAFSASGRLLFAGYTNGDCYVWDTLLAKVVLNIGSLQDSHEDRISCLGLS 350

Query: 241 ADGSALCTGSWDTNLKIWAFGGYRR 265
           ADGSALCTGSWDTNLKIWAFGG+RR
Sbjct: 351 ADGSALCTGSWDTNLKIWAFGGHRR 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517086|ref|XP_003527221.1| PREDICTED: guanine nucleotide-binding protein subunit beta-2-like isoform 2 [Glycine max]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/267 (92%), Positives = 258/267 (96%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAFSPTGQSVACGGLDSVCSIFNLNSP D+DGNL VS+MLSGHKGYVS CQYVPDEDT
Sbjct: 107 MTCAFSPTGQSVACGGLDSVCSIFNLNSPADRDGNLAVSQMLSGHKGYVSSCQYVPDEDT 166

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           HL+T SGDQTCVLWDITTG RTSVFGGEFQSGHTADVLS+SI+GSNSRMFVSGSCDSTAR
Sbjct: 167 HLVTGSGDQTCVLWDITTGFRTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDSTAR 226

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWDTRVASRAVRTFHGH GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY+QQH
Sbjct: 227 LWDTRVASRAVRTFHGHRGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYHQQH 286

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
           G+NE  HVTSIAFSISGRLLFAGY+NGDCYVWDTLLAKVVLNLGSLQN+HE RI+CLGLS
Sbjct: 287 GDNEAAHVTSIAFSISGRLLFAGYTNGDCYVWDTLLAKVVLNLGSLQNTHEDRISCLGLS 346

Query: 241 ADGSALCTGSWDTNLKIWAFGGYRRVL 267
           ADGSALCTGSWDTN+KIWAFGGYRRV+
Sbjct: 347 ADGSALCTGSWDTNIKIWAFGGYRRVV 373

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517084|ref|XP_003527220.1| PREDICTED: guanine nucleotide-binding protein subunit beta-2-like isoform 1 [Glycine max]

 Score =  515 bits (1326), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/267 (92%), Positives = 258/267 (96%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAFSPTGQSVACGGLDSVCSIFNLNSP D+DGNL VS+MLSGHKGYVS CQYVPDEDT
Sbjct: 111 MTCAFSPTGQSVACGGLDSVCSIFNLNSPADRDGNLAVSQMLSGHKGYVSSCQYVPDEDT 170

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           HL+T SGDQTCVLWDITTG RTSVFGGEFQSGHTADVLS+SI+GSNSRMFVSGSCDSTAR
Sbjct: 171 HLVTGSGDQTCVLWDITTGFRTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDSTAR 230

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWDTRVASRAVRTFHGH GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY+QQH
Sbjct: 231 LWDTRVASRAVRTFHGHRGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYHQQH 290

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
           G+NE  HVTSIAFSISGRLLFAGY+NGDCYVWDTLLAKVVLNLGSLQN+HE RI+CLGLS
Sbjct: 291 GDNEAAHVTSIAFSISGRLLFAGYTNGDCYVWDTLLAKVVLNLGSLQNTHEDRISCLGLS 350

Query: 241 ADGSALCTGSWDTNLKIWAFGGYRRVL 267
           ADGSALCTGSWDTN+KIWAFGGYRRV+
Sbjct: 351 ADGSALCTGSWDTNIKIWAFGGYRRVV 377

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491282|gb|AFK33707.1| unknown [Lotus japonicus]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/267 (92%), Positives = 258/267 (96%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCAFSPTGQSVACGGLDSVCSIFNLNS TD+DGNL VSRMLSGHKGYVS CQYVPDEDT
Sbjct: 111 MTCAFSPTGQSVACGGLDSVCSIFNLNSSTDRDGNLNVSRMLSGHKGYVSSCQYVPDEDT 170

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           HLIT SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS+SI+GSNSRMFVSGSCD TAR
Sbjct: 171 HLITGSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDGTAR 230

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWDTRVASRAV+TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ QVYYQQH
Sbjct: 231 LWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQRQVYYQQH 290

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
            +NEIPHVTS+AF ISGRLLFAGY+NG CYVWDTLLAKVVLNLGSLQNSH+GRI+CLGLS
Sbjct: 291 SDNEIPHVTSMAFPISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQNSHDGRISCLGLS 350

Query: 241 ADGSALCTGSWDTNLKIWAFGGYRRVL 267
           ADGSALCTGSWDTNLKIWAFGG+R+V+
Sbjct: 351 ADGSALCTGSWDTNLKIWAFGGHRKVI 377

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797562|emb|CAN73515.1| hypothetical protein VITISV_027042 [Vitis vinifera]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 245/266 (92%), Positives = 258/266 (96%)

Query: 2   TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
           +C  +  GQSVACGGLDSVCSIFNLNSPTDKDGNL +S+MLSGHKGYVS CQYVPDEDTH
Sbjct: 101 SCHKAAFGQSVACGGLDSVCSIFNLNSPTDKDGNLAISKMLSGHKGYVSSCQYVPDEDTH 160

Query: 62  LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121
           LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD+TARL
Sbjct: 161 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDATARL 220

Query: 122 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 181
           WDTR ASRAVRTFHGHEGDVNTV+FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ+HG
Sbjct: 221 WDTRAASRAVRTFHGHEGDVNTVRFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQEHG 280

Query: 182 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241
           +NE+PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH+ RI+CLGLSA
Sbjct: 281 DNEVPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHDSRISCLGLSA 340

Query: 242 DGSALCTGSWDTNLKIWAFGGYRRVL 267
           DGSALCTGSWDTNLKIWAFGG+RRV+
Sbjct: 341 DGSALCTGSWDTNLKIWAFGGHRRVI 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
UNIPROTKB|P93397	377	P93397 "Guanine nucleotide-bin	1.0	0.708	0.906	2e-134
UNIPROTKB|Q40687	380	LOC_Os03g46650 "Guanine nucleo	1.0	0.702	0.810	6.3e-124
TAIR|locus:2139489	377	AGB1 "AT4G34460" [Arabidopsis	0.996	0.705	0.835	1.7e-123
ZFIN|ZDB-GENE-030131-823	340	gnb1a "guanine nucleotide bind	0.895	0.702	0.523	3.8e-69
ZFIN|ZDB-GENE-040426-2855	340	gnb1b "guanine nucleotide bind	0.895	0.702	0.523	4.9e-69
WB|WBGene00001679	340	gpb-1 [Caenorhabditis elegans	0.895	0.702	0.519	1.3e-68
UNIPROTKB|P62871	340	GNB1 "Guanine nucleotide-bindi	0.895	0.702	0.515	2.1e-68
UNIPROTKB|P62872	340	GNB1 "Guanine nucleotide-bindi	0.895	0.702	0.515	2.1e-68
UNIPROTKB|P62873	340	GNB1 "Guanine nucleotide-bindi	0.895	0.702	0.515	2.1e-68
MGI|MGI:95781	340	Gnb1 "guanine nucleotide bindi	0.895	0.702	0.515	2.1e-68

UNIPROTKB|P93397 P93397 "Guanine nucleotide-binding protein subunit beta-1" [Nicotiana tabacum (taxid:4097)]

 Score = 1317 (468.7 bits), Expect = 2.0e-134, P = 2.0e-134
 Identities = 242/267 (90%), Positives = 254/267 (95%)

Query:     1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
             MTCAFSP+GQSVACGGLDSVCSIFNLNSP DKDGN PVSRMLSGHKGYVS CQYVPDEDT
Sbjct:   111 MTCAFSPSGQSVACGGLDSVCSIFNLNSPIDKDGNHPVSRMLSGHKGYVSSCQYVPDEDT 170

Query:    61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
             HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV SVSIS SN R+FVSGSCD+TAR
Sbjct:   171 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVQSVSISSSNPRLFVSGSCDTTAR 230

Query:   121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
             LWDTRVASRA RTF+GHEGDVNTVKFFPDGNRFGTGS+DGTCRLFDIRT HQLQVYYQ H
Sbjct:   231 LWDTRVASRAQRTFYGHEGDVNTVKFFPDGNRFGTGSEDGTCRLFDIRTEHQLQVYYQPH 290

Query:   181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
             G+ +IPHVTS+AFSISGRLLF GYSNGDCYVWDTLLAKVVLNLG +QNSHEGRI+CLGLS
Sbjct:   291 GDGDIPHVTSMAFSISGRLLFVGYSNGDCYVWDTLLAKVVLNLGGVQNSHEGRISCLGLS 350

Query:   241 ADGSALCTGSWDTNLKIWAFGGYRRVL 267
             ADGSALCTGSWDTNLKIWAFGG+R V+
Sbjct:   351 ADGSALCTGSWDTNLKIWAFGGHRSVI 377

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q40687 LOC_Os03g46650 "Guanine nucleotide-binding protein subunit beta" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1218 (433.8 bits), Expect = 6.3e-124, P = 6.3e-124
 Identities = 218/269 (81%), Positives = 247/269 (91%)

Query:     1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
             MTCAF+P GQSVACGGLDS CSIFNLNS  D+DGN+PVSR+L+GHKGYVS CQYVPD++T
Sbjct:   112 MTCAFAPNGQSVACGGLDSACSIFNLNSQADRDGNIPVSRILTGHKGYVSSCQYVPDQET 171

Query:    61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
              LITSSGDQTCVLWD+TTG R S+FGGEF SGHTADVLS+SI+ SNS MFVSGSCD+T R
Sbjct:   172 RLITSSGDQTCVLWDVTTGQRISIFGGEFPSGHTADVLSLSINSSNSNMFVSGSCDATVR 231

Query:   121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ- 179
             LWD R+ASRAVRT+HGHEGD+N+VKFFPDG RFGTGSDDGTCRLFD+RTGHQLQVY ++ 
Sbjct:   232 LWDIRIASRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDVRTGHQLQVYSREP 291

Query:   180 -HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238
                +NE+P VTSIAFSISGRLLFAGYSNGDCYVWDTLLA+VVLNLG+LQNSHEGRI+CLG
Sbjct:   292 DRNDNELPTVTSIAFSISGRLLFAGYSNGDCYVWDTLLAEVVLNLGNLQNSHEGRISCLG 351

Query:   239 LSADGSALCTGSWDTNLKIWAFGGYRRVL 267
             LS+DGSALCTGSWD NLKIWAF G+R+++
Sbjct:   352 LSSDGSALCTGSWDKNLKIWAFSGHRKIV 380

GO:0005515 "protein binding" evidence=IPI

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEP;ISS

TAIR|locus:2139489 AGB1 "AT4G34460" [Arabidopsis thaliana (taxid:3702)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 224/268 (83%), Positives = 244/268 (91%)

Query:     1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
             MTCAFSP GQSVACGGLDSVCSIF+L+S  DKDG +PVSRML+GH+GYVSCCQYVP+ED 
Sbjct:   111 MTCAFSPNGQSVACGGLDSVCSIFSLSSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDA 170

Query:    61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
             HLITSSGDQTC+LWD+TTGL+TSVFGGEFQSGHTADVLSVSISGSN   F+SGSCDSTAR
Sbjct:   171 HLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTAR 230

Query:   121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
             LWDTR ASRAVRTFHGHEGDVNTVKFFPDG RFGTGSDDGTCRL+DIRTGHQLQVY Q H
Sbjct:   231 LWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQLQVY-QPH 289

Query:   181 GENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239
             G+ E   VTSIAFS+SGRLLFAGY SN  CYVWDTLL +VVL+LG  Q+SH  RI+CLGL
Sbjct:   290 GDGENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGL 349

Query:   240 SADGSALCTGSWDTNLKIWAFGGYRRVL 267
             SADGSALCTGSWD+NLKIWAFGG+RRV+
Sbjct:   350 SADGSALCTGSWDSNLKIWAFGGHRRVI 377

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS;IDA;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0010154 "fruit development" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009845 "seed germination" evidence=IEP;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA;IMP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

GO:0009723 "response to ethylene stimulus" evidence=RCA;IMP

GO:0048364 "root development" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0009991 "response to extracellular stimulus" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

ZFIN|ZDB-GENE-030131-823 gnb1a "guanine nucleotide binding protein (G protein), beta polypeptide 1a" [Danio rerio (taxid:7955)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 135/258 (52%), Positives = 185/258 (71%)

Query:     1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
             MTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D 
Sbjct:   101 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 155

Query:    61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
              ++TSSGD TC LWDI TG +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+
Sbjct:   156 QIVTSSGDTTCALWDIETGQQTTTF-----AGHTGDVMSLSLA-PDTRLFVSGACDASAK 209

Query:   121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
             LWD R      +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R   +L VY   H
Sbjct:   210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMVY--SH 266

Query:   181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
              +N I  +TS+AFS SGRLL AGY + +C VWD L A      G L   H+ R++CLG++
Sbjct:   267 -DNIICGITSVAFSKSGRLLLAGYDDFNCNVWDALKAD---RAGVLAG-HDNRVSCLGVT 321

Query:   241 ADGSALCTGSWDTNLKIW 258
              DG A+ TGSWD+ LKIW
Sbjct:   322 DDGMAVATGSWDSFLKIW 339

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

ZFIN|ZDB-GENE-040426-2855 gnb1b "guanine nucleotide binding protein (G protein), beta polypeptide 1b" [Danio rerio (taxid:7955)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 135/258 (52%), Positives = 186/258 (72%)

Query:     1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
             MTCA++P+G  VACGGLD++CSI++L +   ++GN+ VSR L+GH GY+SCC+++  +D 
Sbjct:   101 MTCAYAPSGNYVACGGLDNICSIYSLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 155

Query:    61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
              ++TSSGD TC LWDI TG +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+
Sbjct:   156 QIVTSSGDTTCALWDIETGQQTTTF-----AGHTGDVMSLSLA-PDTRLFVSGACDASAK 209

Query:   121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
             LWD R      +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R   +L VY   H
Sbjct:   210 LWDIR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMVY--SH 266

Query:   181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
              +N I  +TS+AFS SGRLL AGY + +C VWDTL A      G L   H+ R++CLG++
Sbjct:   267 -DNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTLKAD---RAGVLAG-HDNRVSCLGVT 321

Query:   241 ADGSALCTGSWDTNLKIW 258
              DG A+ TGSWD+ LKIW
Sbjct:   322 DDGMAVATGSWDSFLKIW 339

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00001679 gpb-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 134/258 (51%), Positives = 183/258 (70%)

Query:     1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
             MTCA++P+G  VACGGLD++CSI++L +   ++GN+ VSR L GH GY+SCC+++  +D 
Sbjct:   101 MTCAYAPSGSFVACGGLDNICSIYSLKT---REGNVRVSRELPGHTGYLSCCRFL--DDN 155

Query:    61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
              ++TSSGD TC LWDI TG + + F     +GHT DV+S+S+S  + R F+SG+CD++A+
Sbjct:   156 QIVTSSGDMTCALWDIETGQQCTAF-----TGHTGDVMSLSLS-PDFRTFISGACDASAK 209

Query:   121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
             LWD R      +TF GHE D+N V FFP GN F TGSDD TCRLFDIR   +L +Y   H
Sbjct:   210 LWDIR-DGMCKQTFPGHESDINAVAFFPSGNAFATGSDDATCRLFDIRADQELAMY--SH 266

Query:   181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
              +N I  +TS+AFS SGRLLFAGY + +C VWD++  +     G L   H+ R++CLG++
Sbjct:   267 -DNIICGITSVAFSKSGRLLFAGYDDFNCNVWDSMRQE---RAGVLAG-HDNRVSCLGVT 321

Query:   241 ADGSALCTGSWDTNLKIW 258
              DG A+CTGSWD+ LKIW
Sbjct:   322 EDGMAVCTGSWDSFLKIW 339

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0035046 "pronuclear migration" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0040013 "negative regulation of locomotion" evidence=IMP

GO:0046662 "regulation of oviposition" evidence=IMP

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

UNIPROTKB|P62871 GNB1 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1" [Bos taurus (taxid:9913)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 133/258 (51%), Positives = 184/258 (71%)

Query:     1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
             MTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D 
Sbjct:   101 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 155

Query:    61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
              ++TSSGD TC LWDI TG +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+
Sbjct:   156 QIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLA-PDTRLFVSGACDASAK 209

Query:   121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
             LWD R      +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R   +L  Y   H
Sbjct:   210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY--SH 266

Query:   181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
              +N I  +TS++FS SGRLL AGY + +C VWD L A      G L   H+ R++CLG++
Sbjct:   267 -DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---RAGVLAG-HDNRVSCLGVT 321

Query:   241 ADGSALCTGSWDTNLKIW 258
              DG A+ TGSWD+ LKIW
Sbjct:   322 DDGMAVATGSWDSFLKIW 339

GO:0071380 "cellular response to prostaglandin E stimulus" evidence=IDA

GO:0071870 "cellular response to catecholamine stimulus" evidence=IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0051020 "GTPase binding" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|P62872 GNB1 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1" [Canis lupus familiaris (taxid:9615)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 133/258 (51%), Positives = 184/258 (71%)

Query:     1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
             MTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D 
Sbjct:   101 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 155

Query:    61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
              ++TSSGD TC LWDI TG +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+
Sbjct:   156 QIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLA-PDTRLFVSGACDASAK 209

Query:   121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
             LWD R      +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R   +L  Y   H
Sbjct:   210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY--SH 266

Query:   181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
              +N I  +TS++FS SGRLL AGY + +C VWD L A      G L   H+ R++CLG++
Sbjct:   267 -DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---RAGVLAG-HDNRVSCLGVT 321

Query:   241 ADGSALCTGSWDTNLKIW 258
              DG A+ TGSWD+ LKIW
Sbjct:   322 DDGMAVATGSWDSFLKIW 339

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0051020 "GTPase binding" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|P62873 GNB1 "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1" [Homo sapiens (taxid:9606)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 133/258 (51%), Positives = 184/258 (71%)

Query:     1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
             MTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D 
Sbjct:   101 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 155

Query:    61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
              ++TSSGD TC LWDI TG +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+
Sbjct:   156 QIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLA-PDTRLFVSGACDASAK 209

Query:   121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
             LWD R      +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R   +L  Y   H
Sbjct:   210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY--SH 266

Query:   181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
              +N I  +TS++FS SGRLL AGY + +C VWD L A      G L   H+ R++CLG++
Sbjct:   267 -DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---RAGVLAG-HDNRVSCLGVT 321

Query:   241 ADGSALCTGSWDTNLKIW 258
              DG A+ TGSWD+ LKIW
Sbjct:   322 DDGMAVATGSWDSFLKIW 339

GO:0004871 "signal transducer activity" evidence=IEA

GO:0001917 "photoreceptor inner segment" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0010659 "cardiac muscle cell apoptotic process" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0042622 "photoreceptor outer segment membrane" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0071456 "cellular response to hypoxia" evidence=IEA

GO:0051020 "GTPase binding" evidence=IPI

GO:0007165 "signal transduction" evidence=TAS

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=TAS

GO:0007265 "Ras protein signal transduction" evidence=TAS

GO:0003924 "GTPase activity" evidence=IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=IDA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0071377 "cellular response to glucagon stimulus" evidence=TAS

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=ISS

GO:0071380 "cellular response to prostaglandin E stimulus" evidence=ISS

GO:0071870 "cellular response to catecholamine stimulus" evidence=ISS

GO:0005622 "intracellular" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

MGI|MGI:95781 Gnb1 "guanine nucleotide binding protein (G protein), beta 1" [Mus musculus (taxid:10090)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 133/258 (51%), Positives = 184/258 (71%)

Query:     1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
             MTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D 
Sbjct:   101 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 155

Query:    61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
              ++TSSGD TC LWDI TG +T+ F     +GHT DV+S+S++  ++R+FVSG+CD++A+
Sbjct:   156 QIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSLA-PDTRLFVSGACDASAK 209

Query:   121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
             LWD R      +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R   +L  Y   H
Sbjct:   210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY--SH 266

Query:   181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
              +N I  +TS++FS SGRLL AGY + +C VWD L A      G L   H+ R++CLG++
Sbjct:   267 -DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---RAGVLAG-HDNRVSCLGVT 321

Query:   241 ADGSALCTGSWDTNLKIW 258
              DG A+ TGSWD+ LKIW
Sbjct:   322 DDGMAVATGSWDSFLKIW 339

GO:0001664 "G-protein coupled receptor binding" evidence=ISO

GO:0001750 "photoreceptor outer segment" evidence=IDA

GO:0001917 "photoreceptor inner segment" evidence=ISO

GO:0003924 "GTPase activity" evidence=ISA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISO;ISA;IPI

GO:0006184 "GTP catabolic process" evidence=ISO;ISA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO;IDA;TAS

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IDA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=ISO

GO:0007603 "phototransduction, visible light" evidence=ISA

GO:0008283 "cell proliferation" evidence=IDA

GO:0010659 "cardiac muscle cell apoptotic process" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0031702 "type 1 angiotensin receptor binding" evidence=ISO

GO:0042622 "photoreceptor outer segment membrane" evidence=ISO

GO:0044297 "cell body" evidence=ISO

GO:0050909 "sensory perception of taste" evidence=IDA

GO:0051020 "GTPase binding" evidence=ISO

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0071456 "cellular response to hypoxia" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93339	GBB_NICPL	No assigned EC number	0.8838	1.0	0.7082	N/A	no
Q40507	GBB3_TOBAC	No assigned EC number	0.9122	0.9250	0.6586	N/A	no
P17343	GBB1_CAEEL	No assigned EC number	0.5116	0.8951	0.7029	yes	no
P49177	GBB_ARATH	No assigned EC number	0.8358	0.9962	0.7055	yes	no
Q40687	GBB_ORYSJ	No assigned EC number	0.8104	1.0	0.7026	yes	no
Q6PH57	GBB1_DANRE	No assigned EC number	0.5116	0.8951	0.7029	yes	no
P93563	GBB_SOLTU	No assigned EC number	0.9026	0.9513	0.6737	N/A	no
P49178	GBB_MAIZE	No assigned EC number	0.7955	1.0	0.7026	N/A	no
P93397	GBB1_TOBAC	No assigned EC number	0.9063	1.0	0.7082	N/A	no
P93398	GBB2_TOBAC	No assigned EC number	0.9138	1.0	0.7082	N/A	no
P36408	GBB_DICDI	No assigned EC number	0.5057	0.8988	0.6916	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_IV0488	hypothetical protein (377 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.IX.47.1	hypothetical protein (385 aa)			•						0.496
	gw1.VIII.402.1	hypothetical protein (356 aa)			•						0.490
	eugene3.00140830	hypothetical protein (166 aa)			•						0.486
	estExt_Genewise1_v1.C_LG_X6506	hypothetical protein (370 aa)			•						0.483
	estExt_Genewise1_v1.C_LG_X0047	hypothetical protein (244 aa)			•						0.463
	gw1.IX.2532.1	hypothetical protein (331 aa)			•						0.458
	gw1.I.4095.1	hypothetical protein (331 aa)			•						0.457
	eugene3.56640001	annotation not avaliable (132 aa)			•						0.446
	gw1.XVI.3725.1	annotation not avaliable (120 aa)			•						0.439
	gw1.XII.1531.1	hypothetical protein (314 aa)			•						0.437

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	267
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-59
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-37
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-36
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-31
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-09
smart00320	40	smart00320, WD40, WD40 repeats	1e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-07
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	7e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04
smart00320	40	smart00320, WD40, WD40 repeats	8e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
smart00320	40	smart00320, WD40, WD40 repeats	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  190 bits (484), Expect = 2e-59
 Identities = 89/258 (34%), Positives = 119/258 (46%), Gaps = 24/258 (9%)

Query: 2   TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
             A S  G  +A G  D    +++L +           R L+GH  YVS   + PD    
Sbjct: 56  DVAASADGTYLASGSSDKTIRLWDLETG-------ECVRTLTGHTSYVSSVAFSPDGRI- 107

Query: 62  LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121
           L +SS D+T  +WD+ TG   +        GHT  V SV+ S        S S D T +L
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTL-----RGHTDWVNSVAFSPDG-TFVASSSQDGTIKL 161

Query: 122 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 181
           WD R   + V T  GH G+VN+V F PDG +  + S DGT +L+D+ TG  L       G
Sbjct: 162 WDLR-TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL---RG 217

Query: 182 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241
                 V S+AFS  G LL +G  +G   VWD    + V  L      H   +T L  S 
Sbjct: 218 HENG--VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS----GHTNSVTSLAWSP 271

Query: 242 DGSALCTGSWDTNLKIWA 259
           DG  L +GS D  ++IW 
Sbjct: 272 DGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  133 bits (337), Expect = 1e-37
 Identities = 85/256 (33%), Positives = 123/256 (48%), Gaps = 24/256 (9%)

Query: 3   CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
            AFSP G+ +A G  D    +++L +         + R L GH G V       D  T+L
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASAD-GTYL 66

Query: 63  ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 122
            + S D+T  LWD+ TG            GHT+ V SV+ S  + R+  S S D T ++W
Sbjct: 67  ASGSSDKTIRLWDLETGECVRTLT-----GHTSYVSSVAFS-PDGRILSSSSRDKTIKVW 120

Query: 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 182
           D     + + T  GH   VN+V F PDG    + S DGT +L+D+RTG  +       GE
Sbjct: 121 DVE-TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE 179

Query: 183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 242
                V S+AFS  G  L +  S+G   +WD    K +   G+L+  HE  +  +  S D
Sbjct: 180 -----VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL---GTLR-GHENGVNSVAFSPD 230

Query: 243 GSALCTGSWDTNLKIW 258
           G  L +GS D  +++W
Sbjct: 231 GYLLASGSEDGTIRVW 246

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  130 bits (329), Expect = 2e-36
 Identities = 75/220 (34%), Positives = 101/220 (45%), Gaps = 17/220 (7%)

Query: 39  SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 98
            R L GH G V+C  + PD    L T SGD T  +WD+ TG            GHT  V 
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRTL-----KGHTGPVR 55

Query: 99  SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD 158
            V+ S ++     SGS D T RLWD       VRT  GH   V++V F PDG    + S 
Sbjct: 56  DVAAS-ADGTYLASGSSDKTIRLWDLE-TGECVRTLTGHTSYVSSVAFSPDGRILSSSSR 113

Query: 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 218
           D T +++D+ TG  L    + H +     V S+AFS  G  + +   +G   +WD    K
Sbjct: 114 DKTIKVWDVETGKCLTT-LRGHTDW----VNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168

Query: 219 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
            V  L      H G +  +  S DG  L + S D  +K+W
Sbjct: 169 CVATL----TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  120 bits (300), Expect = 3e-31
 Identities = 87/259 (33%), Positives = 121/259 (46%), Gaps = 21/259 (8%)

Query: 3   CAFSPTGQSVA--CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
              SP G S+      LD    +++L++P        + R L GH   V+   + PD   
Sbjct: 116 ALSSPDGNSILLASSSLDGTVKLWDLSTPG------KLIRTLEGHSESVTSLAFSPDGKL 169

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
               SS D T  LWD+ TG   S       +GHT  V S++ S     +  SGS D T R
Sbjct: 170 LASGSSLDGTIKLWDLRTGKPLSTL-----AGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWD         T  GH   V +  F PDG+   +GS DGT RL+D+R+   L      H
Sbjct: 225 LWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
                  V S+AFS  G+LL +G S+G   +WD    K++ +L      HEG ++ L  S
Sbjct: 284 SS----SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK--GHEGPVSSLSFS 337

Query: 241 ADGSALCTG-SWDTNLKIW 258
            DGS L +G S D  +++W
Sbjct: 338 PDGSLLVSGGSDDGTIRLW 356

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  112 bits (279), Expect = 2e-28
 Identities = 83/258 (32%), Positives = 119/258 (46%), Gaps = 23/258 (8%)

Query: 3   CAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
            AFSP G+   +   LD    +++L +             L+GH   VS   + PD    
Sbjct: 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPL-------STLAGHTDPVSSLAFSPDGGLL 213

Query: 62  LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121
           + + S D T  LWD++TG           SGH+  V  VS    +  +  SGS D T RL
Sbjct: 214 IASGSSDGTIRLWDLSTGKLLR----STLSGHSDSV--VSSFSPDGSLLASGSSDGTIRL 267

Query: 122 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 181
           WD R +S  +RT  GH   V +V F PDG    +GS DGT RL+D+ TG  L     +  
Sbjct: 268 WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH 327

Query: 182 ENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
           E     V+S++FS  G LL +G S +G   +WD    K +  L          +  +  S
Sbjct: 328 EGP---VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL-----EGHSNVLSVSFS 379

Query: 241 ADGSALCTGSWDTNLKIW 258
            DG  + +GS D  +++W
Sbjct: 380 PDGRVVSSGSTDGTVRLW 397

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  105 bits (262), Expect = 5e-26
 Identities = 87/259 (33%), Positives = 130/259 (50%), Gaps = 26/259 (10%)

Query: 3   CAFSPTGQS-VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
            AFSP G   +A G  D    +++L++         +   LSGH   V    + PD    
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLST------GKLLRSTLSGHSDSVVSS-FSPDGSL- 255

Query: 62  LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121
           L + S D T  LWD+ +            SGH++ VLSV+ S  + ++  SGS D T RL
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTL----SGHSSSVLSVAFSP-DGKLLASGSSDGTVRL 310

Query: 122 WDTR-VASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQ 179
           WD       +  T  GHEG V+++ F PDG+   +G SDDGT RL+D+RTG  L+     
Sbjct: 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370

Query: 180 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239
                   V S++FS  GR++ +G ++G   +WD     ++ NL    + H  R+T L  
Sbjct: 371 SN------VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNL----DGHTSRVTSLDF 420

Query: 240 SADGSALCTGSWDTNLKIW 258
           S DG +L +GS D  +++W
Sbjct: 421 SPDGKSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 97.1 bits (240), Expect = 6e-23
 Identities = 74/210 (35%), Positives = 101/210 (48%), Gaps = 17/210 (8%)

Query: 4   AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 63
           +FSP G  +A G  D    +++L S      +  + R LSGH   V    + PD    L 
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRS------SSSLLRTLSGHSSSVLSVAFSPDGKL-LA 300

Query: 64  TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 123
           + S D T  LWD+ TG   S    +   GH   V S+S S   S +   GS D T RLWD
Sbjct: 301 SGSSDGTVRLWDLETGKLLSSLTLK---GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Query: 124 TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 183
            R   + ++T  GH  +V +V F PDG    +GS DGT RL+D+ TG  L+         
Sbjct: 358 LR-TGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR- 414

Query: 184 EIPHVTSIAFSISGRLLFAGYSNGDCYVWD 213
               VTS+ FS  G+ L +G S+    +WD
Sbjct: 415 ----VTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 86.7 bits (213), Expect = 2e-19
 Identities = 70/245 (28%), Positives = 114/245 (46%), Gaps = 17/245 (6%)

Query: 18  DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77
           +S   +  L S +        S +L GH+  ++   + PD +  L++ S D T  LWD+ 
Sbjct: 37  ESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLD 95

Query: 78  TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS--GSCDSTARLWDTRVASRAVRTFH 135
            G +        +  H + V  +++S  +    +    S D T +LWD     + +RT  
Sbjct: 96  NGEKLI---KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE 152

Query: 136 GHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 194
           GH   V ++ F PDG    +GS  DGT +L+D+RTG  L              V+S+AFS
Sbjct: 153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL-----AGHTDPVSSLAFS 207

Query: 195 ISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 253
             G LL A  S +G   +WD    K++ +  +L    +  ++    S DGS L +GS D 
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHSDSVVSS--FSPDGSLLASGSSDG 263

Query: 254 NLKIW 258
            +++W
Sbjct: 264 TIRLW 268

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.5 bits (132), Expect = 7e-09
 Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 8/181 (4%)

Query: 81  RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 140
            +       +       L+     S           +        +   +     GHE  
Sbjct: 8   SSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDS 67

Query: 141 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 200
           + ++ F PDG    +GS DGT +L+D+  G +L       G ++         S  G  +
Sbjct: 68  ITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL--IKSLEGLHDSSVSKLALSSPDGNSI 125

Query: 201 FAGYSNGD--CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKI 257
               S+ D    +WD  L+     + +L+  H   +T L  S DG  L +GS  D  +K+
Sbjct: 126 LLASSSLDGTVKLWD--LSTPGKLIRTLEG-HSESVTSLAFSPDGKLLASGSSLDGTIKL 182

Query: 258 W 258
           W
Sbjct: 183 W 183

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 131 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 166
           ++T  GH G V +V F PDG    +GSDDGT +L+D
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 131 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 166
           +RT  GH G V +V F PDGN   +GSDDGT R++D
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 41  MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI-TTGLRTSVFGG--EFQSGHTADV 97
           +L G +G +    + P +   L T+S D T + W I   GL  ++       Q GHT  V
Sbjct: 70  ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKV 128

Query: 98  LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
             VS   S   +  S   D    +WD     +AV     H   + ++++  DG+   T S
Sbjct: 129 GIVSFHPSAMNVLASAGADMVVNVWDVE-RGKAVEVIKCHSDQITSLEWNLDGSLLCTTS 187

Query: 158 DDGTCRLFDIRTG 170
            D    + D R G
Sbjct: 188 KDKKLNIIDPRDG 200

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 91  SGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 123
            GHT  V SV+ S  +  +  SGS D T R+WD
Sbjct: 8   KGHTGPVTSVAFS-PDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 91  SGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 123
            GHT  V SV+ S  + +   SGS D T +LWD
Sbjct: 9   KGHTGPVTSVAFS-PDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.2 bits (84), Expect = 8e-04
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 75
          R L GH G V+   + PD    L + S D T  +WD
Sbjct: 5  RTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 75
          + L GH G V+   + PD   +L + S D T  LWD
Sbjct: 6  KTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 230 HEGRITCLGLSADGSALCTGSWDTNLKIW 258
           H G +T +  S DG+ L +GS D  +++W
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 228 NSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
             H G +T +  S DG  L +GS D  +K+W
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.98
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.91
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.9
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
KOG0649	325	consensus WD40 repeat protein [General function pr	99.87
KOG1539	910	consensus WD repeat protein [General function pred	99.87
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.84
KOG2055	514	consensus WD40 repeat protein [General function pr	99.84
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.83
KOG4227	609	consensus WD40 repeat protein [General function pr	99.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.83
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.82
KOG2048	691	consensus WD40 repeat protein [General function pr	99.82
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.81
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.81
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.8
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.8
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.79
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG1310	758	consensus WD40 repeat protein [General function pr	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.76
PRK01742	429	tolB translocation protein TolB; Provisional	99.73
KOG1188	376	consensus WD40 repeat protein [General function pr	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.72
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.72
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.72
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.72
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.69
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.68
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.68
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.67
KOG1310	758	consensus WD40 repeat protein [General function pr	99.67
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.67
KOG1334	559	consensus WD40 repeat protein [General function pr	99.67
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.66
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.65
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.64
KOG4227	609	consensus WD40 repeat protein [General function pr	99.64
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.63
KOG1963	792	consensus WD40 repeat protein [General function pr	99.63
KOG2139	445	consensus WD40 repeat protein [General function pr	99.63
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.62
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.6
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.6
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.59
PRK02889	427	tolB translocation protein TolB; Provisional	99.59
PRK05137	435	tolB translocation protein TolB; Provisional	99.58
PRK04922	433	tolB translocation protein TolB; Provisional	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.56
KOG2139	445	consensus WD40 repeat protein [General function pr	99.56
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.56
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.55
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.55
PRK04922	433	tolB translocation protein TolB; Provisional	99.54
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.54
PRK02889	427	tolB translocation protein TolB; Provisional	99.52
KOG1334	559	consensus WD40 repeat protein [General function pr	99.51
KOG0649	325	consensus WD40 repeat protein [General function pr	99.51
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.5
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.5
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.49
PRK05137	435	tolB translocation protein TolB; Provisional	99.48
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.48
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.45
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.44
KOG2321	703	consensus WD40 repeat protein [General function pr	99.43
KOG4547	541	consensus WD40 repeat-containing protein [General	99.42
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.39
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.39
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.38
PRK04792	448	tolB translocation protein TolB; Provisional	99.36
PRK04792	448	tolB translocation protein TolB; Provisional	99.35
PRK00178	430	tolB translocation protein TolB; Provisional	99.34
PRK00178	430	tolB translocation protein TolB; Provisional	99.31
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.31
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.31
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.3
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.29
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.28
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.27
PRK01029	428	tolB translocation protein TolB; Provisional	99.25
KOG2315	566	consensus Predicted translation initiation factor	99.25
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.25
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.24
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.23
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.21
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.21
KOG4547	541	consensus WD40 repeat-containing protein [General	99.21
KOG2321	703	consensus WD40 repeat protein [General function pr	99.21
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.21
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.2
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.2
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.19
PRK01029	428	tolB translocation protein TolB; Provisional	99.19
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.13
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.11
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.05
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.05
COG4946	668	Uncharacterized protein related to the periplasmic	99.03
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.02
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.01
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.01
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.0
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.99
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.98
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.98
KOG2695	425	consensus WD40 repeat protein [General function pr	98.96
KOG2695	425	consensus WD40 repeat protein [General function pr	98.96
PRK04043	419	tolB translocation protein TolB; Provisional	98.94
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.9
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.86
COG4946	668	Uncharacterized protein related to the periplasmic	98.84
KOG2314	698	consensus Translation initiation factor 3, subunit	98.84
KOG2315	566	consensus Predicted translation initiation factor	98.82
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.81
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.79
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.76
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.75
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.75
PRK04043	419	tolB translocation protein TolB; Provisional	98.7
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.69
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.68
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.66
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.58
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.56
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.54
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.51
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.48
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.48
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.47
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.47
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.47
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.46
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.46
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.45
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.43
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.42
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.41
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.38
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.37
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.36
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.32
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.32
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.2
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.19
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.18
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.17
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.15
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.14
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.11
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.05
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.0
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.97
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.94
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.85
KOG3621	726	consensus WD40 repeat-containing protein [General	97.78
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.77
KOG3621	726	consensus WD40 repeat-containing protein [General	97.72
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.66
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.63
PRK02888	635	nitrous-oxide reductase; Validated	97.59
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.52
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.52
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.51
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.51
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.48
KOG2395	644	consensus Protein involved in vacuole import and d	97.47
KOG2314	698	consensus Translation initiation factor 3, subunit	97.46
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.44
KOG2444	238	consensus WD40 repeat protein [General function pr	97.39
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.39
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.34
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.3
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.29
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.28
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.22
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.2
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.2
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.15
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.12
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.12
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.98
KOG2444	238	consensus WD40 repeat protein [General function pr	96.98
COG3391	381	Uncharacterized conserved protein [Function unknow	96.94
PRK02888	635	nitrous-oxide reductase; Validated	96.81
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.77
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.73
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.72
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.63
PRK13616	591	lipoprotein LpqB; Provisional	96.57
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.25
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.18
PHA02713	557	hypothetical protein; Provisional	96.15
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.89
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.84
PHA02713	557	hypothetical protein; Provisional	95.83
KOG2395	644	consensus Protein involved in vacuole import and d	95.73
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.67
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.63
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.62
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.55
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.54
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.46
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.45
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.31
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.2
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.15
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.1
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.91
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.84
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.84
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.75
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.74
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.58
COG3391	381	Uncharacterized conserved protein [Function unknow	94.49
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.38
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.3
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.24
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.18
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.11
PRK13616	591	lipoprotein LpqB; Provisional	93.22
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.13
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.06
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.91
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.82
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	92.8
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	92.79
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.75
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.65
PHA03098	534	kelch-like protein; Provisional	92.64
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	92.61
COG5167	776	VID27 Protein involved in vacuole import and degra	92.45
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.25
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	91.9
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.81
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	91.8
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.59
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.17
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.11
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.06
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.05
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.0
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.24
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.04
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	88.63
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	88.34
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.25
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.17
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.95
PHA03098	534	kelch-like protein; Provisional	87.86
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	87.18
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	87.02
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	86.92
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.63
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.57
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	86.19
PF14727	418	PHTB1_N: PTHB1 N-terminus	85.92
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	85.75
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	85.23
PHA02790	480	Kelch-like protein; Provisional	84.96
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	84.7
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.46
KOG2247	615	consensus WD40 repeat-containing protein [General	84.42
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	84.22
PHA02790	480	Kelch-like protein; Provisional	83.53
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	82.97
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	82.86
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.28
PF12768	281	Rax2: Cortical protein marker for cell polarity	81.34
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	80.96
COG5167	776	VID27 Protein involved in vacuole import and degra	80.95
PLN00033	398	photosystem II stability/assembly factor; Provisio	80.82
PLN00033	398	photosystem II stability/assembly factor; Provisio	80.79

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.2e-47  Score=284.59  Aligned_cols=243  Identities=57%  Similarity=1.091  Sum_probs=218.9

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      |+|||+|.|+.+++||.|+.+.||++..+ ..++..+..+.+.+|++++.||.|.++  .+|+++|.|.+..+||+++++
T Consensus       101 MtCA~sPSg~~VAcGGLdN~Csiy~ls~~-d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~  177 (343)
T KOG0286|consen  101 MTCAYSPSGNFVACGGLDNKCSIYPLSTR-DAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQ  177 (343)
T ss_pred             EEEEECCCCCeEEecCcCceeEEEecccc-cccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccce
Confidence            78999999999999999999999999853 235556788899999999999999874  579999999999999999999


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      +...|     .+|...|.++++.|.+.+.|++|+.|+..++||++.+ ...+.+.+|+..|+++.|+|+|.-|++|++|+
T Consensus       178 ~~~~f-----~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~  251 (343)
T KOG0286|consen  178 QTQVF-----HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDA  251 (343)
T ss_pred             EEEEe-----cCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeeecCCCc
Confidence            88877     4899999999999888899999999999999999965 56788999999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      +.|+||++..+++..+..   .+...+|++++||..|++|++|+.|..+.+||....+.+..+    .+|+.+|.|+..+
T Consensus       252 tcRlyDlRaD~~~a~ys~---~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L----~GHeNRvScl~~s  324 (343)
T KOG0286|consen  252 TCRLYDLRADQELAVYSH---DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL----AGHENRVSCLGVS  324 (343)
T ss_pred             eeEEEeecCCcEEeeecc---CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe----eccCCeeEEEEEC
Confidence            999999999888776542   344568999999999999999999999999998777766544    5799999999999


Q ss_pred             CCCCeEEEeECCCcEEEEe
Q 024451          241 ADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       241 p~~~~l~sgs~dg~i~~w~  259 (267)
                      |||..+++||+|..+|||.
T Consensus       325 ~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  325 PDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCCcEEEecchhHheeecC
Confidence            9999999999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.7e-45  Score=282.29  Aligned_cols=240  Identities=29%  Similarity=0.501  Sum_probs=209.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      .|.|++++++|+|||++|.+++|+.+.       .+...++.||+..|.++.|+|. ++..++||+.||++++|++.+..
T Consensus       180 ~~~fS~ds~~laT~swsG~~kvW~~~~-------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  180 GCSFSRDSKHLATGSWSGLVKVWSVPQ-------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             eeEeecCCCeEEEeecCCceeEeecCC-------cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            478999999999999999999999864       2467889999999999999997 46689999999999999998765


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      .+..+     .+|...|..++|+| ++++++|++.|.+-++||+++.. ......||...|.+++|+|+|.++++||-|.
T Consensus       253 ~l~~l-----~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~  325 (459)
T KOG0272|consen  253 PLQDL-----EGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKS-ELLLQEGHSKGVFSIAFQPDGSLAATGGLDS  325 (459)
T ss_pred             chhhh-----hcchhhheeeeecC-CCceeeecccccchhhcccccch-hhHhhcccccccceeEecCCCceeeccCccc
Confidence            55443     47999999999997 57899999999999999998644 4455679999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      .-||||++++.++..+..     +..+|.++.|+|+|..|++|+.|+.++|||++....+..+    ..|...|+.++|+
T Consensus       326 ~~RvWDlRtgr~im~L~g-----H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i----pAH~nlVS~Vk~~  396 (459)
T KOG0272|consen  326 LGRVWDLRTGRCIMFLAG-----HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI----PAHSNLVSQVKYS  396 (459)
T ss_pred             hhheeecccCcEEEEecc-----cccceeeEeECCCceEEeecCCCCcEEEeeecccccceec----ccccchhhheEec
Confidence            999999999998876533     3457999999999999999999999999999877765544    5799999999999


Q ss_pred             C-CCCeEEEeECCCcEEEEecCceE
Q 024451          241 A-DGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       241 p-~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      | .|.+|+|+|.|++++||.-.+.+
T Consensus       397 p~~g~fL~TasyD~t~kiWs~~~~~  421 (459)
T KOG0272|consen  397 PQEGYFLVTASYDNTVKIWSTRTWS  421 (459)
T ss_pred             ccCCeEEEEcccCcceeeecCCCcc
Confidence            9 78999999999999999754443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.3e-43  Score=293.29  Aligned_cols=244  Identities=34%  Similarity=0.613  Sum_probs=214.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCC-----------C-------------CCCCCcccccccCCeeeEEEEEEecC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPT-----------D-------------KDGNLPVSRMLSGHKGYVSCCQYVPD   57 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~-----------~-------------~~~~~~~~~~~~~h~~~v~~~~~~~~   57 (267)
                      |+.|++|+++||.|..|..|++|.+.+..           +             ........+++.||.++|+.++|+|+
T Consensus       383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd  462 (707)
T KOG0263|consen  383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD  462 (707)
T ss_pred             eEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc
Confidence            56799999999999999999999988410           0             01112245668999999999999997


Q ss_pred             CCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc
Q 024451           58 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH  137 (267)
Q Consensus        58 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~  137 (267)
                      . ++|+++|+|+++|+|.+.+......+     .+|..+|..+.|+| .+.+|+|++.|++.++|... ..++.+.+.+|
T Consensus       463 ~-rfLlScSED~svRLWsl~t~s~~V~y-----~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d-~~~PlRifagh  534 (707)
T KOG0263|consen  463 R-RFLLSCSEDSSVRLWSLDTWSCLVIY-----KGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTD-HNKPLRIFAGH  534 (707)
T ss_pred             c-cceeeccCCcceeeeecccceeEEEe-----cCCCcceeeEEecC-CceEEEecCCCceeeeeecc-cCCchhhhccc
Confidence            5 69999999999999999998777666     47999999999995 68899999999999999986 46789999999


Q ss_pred             ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451          138 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  217 (267)
Q Consensus       138 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  217 (267)
                      .+.|.|+.|||+.+|+++||.|.++|+||..++.....+..     +..+|.+++|||+|++|++|+.||.|.+||+..+
T Consensus       535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-----H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~  609 (707)
T KOG0263|consen  535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-----HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG  609 (707)
T ss_pred             ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-----CCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence            99999999999999999999999999999999998877643     4567999999999999999999999999999988


Q ss_pred             ceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          218 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       218 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +.+..+    ..|.+.|.++.|+.+|..||+||.|.+|++||+..
T Consensus       610 ~~v~~l----~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  610 SLVKQL----KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             cchhhh----hcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            877665    57899999999999999999999999999999753

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-42  Score=267.56  Aligned_cols=237  Identities=30%  Similarity=0.526  Sum_probs=198.8

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC----CCeeEEEeeCCCeEEEEeC
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD----EDTHLITSSGDQTCVLWDI   76 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~d~~v~iwd~   76 (267)
                      +|++|+|||+.|++|+.||+|++||.....      +..+.+++|+..|++++|.|-    +.++|++++.||+|+|||+
T Consensus       161 lcvawsPDgk~iASG~~dg~I~lwdpktg~------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~  234 (480)
T KOG0271|consen  161 LCVAWSPDGKKIASGSKDGSIRLWDPKTGQ------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT  234 (480)
T ss_pred             EEEEECCCcchhhccccCCeEEEecCCCCC------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence            478999999999999999999999976532      356789999999999999762    3468999999999999999


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC------------------------------
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV------------------------------  126 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~------------------------------  126 (267)
                      ..+..+..+     .+|+..|+|++|-  ...++.+++.|++|++|+...                              
T Consensus       235 ~~~~~~~~l-----sgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf  307 (480)
T KOG0271|consen  235 KLGTCVRTL-----SGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF  307 (480)
T ss_pred             cCceEEEEe-----ccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence            887766555     4688888888875  345677888888888886532                              


Q ss_pred             ------------------------------------------------cccceEEeeccccceeEEEEecCCCEEEEeeC
Q 024451          127 ------------------------------------------------ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD  158 (267)
Q Consensus       127 ------------------------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  158 (267)
                                                                      ..+++..+.+|..-|+.+.|+||++++|+++-
T Consensus       308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF  387 (480)
T KOG0271|consen  308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF  387 (480)
T ss_pred             ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec
Confidence                                                            11223345688889999999999999999999


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      |+.|++||-++++-+..+..     +...|..++|+.|.+.|++|+.|..+++||+++.+....+    .+|.+.|.++.
T Consensus       388 DkSVkLW~g~tGk~lasfRG-----Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL----pGh~DEVf~vD  458 (480)
T KOG0271|consen  388 DKSVKLWDGRTGKFLASFRG-----HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL----PGHADEVFAVD  458 (480)
T ss_pred             ccceeeeeCCCcchhhhhhh-----ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC----CCCCceEEEEE
Confidence            99999999999987766533     4457999999999999999999999999999887766544    57999999999


Q ss_pred             ECCCCCeEEEeECCCcEEEEe
Q 024451          239 LSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       239 ~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      |+|||..+++|+.|+.+++|.
T Consensus       459 wspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  459 WSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ecCCCceeecCCCceEEEeec
Confidence            999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-42  Score=266.47  Aligned_cols=243  Identities=27%  Similarity=0.468  Sum_probs=203.9

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +|.+|+|+|+.|++|+-|.++|+||+...+       ...+.++|+.-|.|++|+|++ ..|++|+.||+|++||..++.
T Consensus       119 l~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-------p~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~  190 (480)
T KOG0271|consen  119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTET-------PLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQ  190 (480)
T ss_pred             EEEEecCCCceEEecCCCceEEeeccCCCC-------cceeecCCccEEEEEEECCCc-chhhccccCCeEEEecCCCCC
Confidence            478899999999999999999999998744       467789999999999999986 589999999999999998886


Q ss_pred             eEEEeCCccccCCccceEEEEEeC----CCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEe
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISG----SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG  156 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  156 (267)
                      +.    +....+|...|.+++|.|    +..+.+++++.||.++|||+.. ...+..+.+|..+|+|+.|--+ .+++++
T Consensus       191 ~~----g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~-~~~~~~lsgHT~~VTCvrwGG~-gliySg  264 (480)
T KOG0271|consen  191 QI----GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL-GTCVRTLSGHTASVTCVRWGGE-GLIYSG  264 (480)
T ss_pred             cc----cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-ceEEEEeccCccceEEEEEcCC-ceEEec
Confidence            54    244578999999999975    3356899999999999999974 4567788899999999999754 589999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEEeec--------------------------------------------------------
Q 024451          157 SDDGTCRLFDIRTGHQLQVYYQQH--------------------------------------------------------  180 (267)
Q Consensus       157 ~~d~~i~iwd~~~~~~~~~~~~~~--------------------------------------------------------  180 (267)
                      +.|++|++|+...+.....+..+.                                                        
T Consensus       265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD  344 (480)
T ss_pred             CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence            999999999987653221111000                                                        


Q ss_pred             ------------------CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC
Q 024451          181 ------------------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  242 (267)
Q Consensus       181 ------------------~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  242 (267)
                                        ..++..-|..+.||||++++|+++-|..|++||.++++.+..+    .+|-++|..++|+.|
T Consensus       345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf----RGHv~~VYqvawsaD  420 (480)
T KOG0271|consen  345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF----RGHVAAVYQVAWSAD  420 (480)
T ss_pred             CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh----hhccceeEEEEeccC
Confidence                              0012234788999999999999999999999999999887665    579999999999999


Q ss_pred             CCeEEEeECCCcEEEEecC
Q 024451          243 GSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       243 ~~~l~sgs~dg~i~~w~~~  261 (267)
                      .++|++||.|.++++|++.
T Consensus       421 sRLlVS~SkDsTLKvw~V~  439 (480)
T KOG0271|consen  421 SRLLVSGSKDSTLKVWDVR  439 (480)
T ss_pred             ccEEEEcCCCceEEEEEee
Confidence            9999999999999999864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-42  Score=269.99  Aligned_cols=234  Identities=29%  Similarity=0.515  Sum_probs=203.8

Q ss_pred             ceeeCCC--CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            2 TCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         2 ~~~~~~~--g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      ++.|+|.  +..++|++.||++++|++....       +...+.+|...|..++|+|++ .+|+|++.|.+=++||++++
T Consensus       222 ~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~-------~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk  293 (459)
T KOG0272|consen  222 AAVFHPVDSDLNLATASADGTVKLWKLSQET-------PLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETK  293 (459)
T ss_pred             eEEEccCCCccceeeeccCCceeeeccCCCc-------chhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccc
Confidence            4679997  6789999999999999987532       566789999999999999976 69999999999999999987


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  159 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  159 (267)
                      .....     +.||...|.+++|.+ ++.+++||+.|..-+|||++++. .+..+.+|.++|.+++|+|+|..+||||.|
T Consensus       294 ~ElL~-----QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr-~im~L~gH~k~I~~V~fsPNGy~lATgs~D  366 (459)
T KOG0272|consen  294 SELLL-----QEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGR-CIMFLAGHIKEILSVAFSPNGYHLATGSSD  366 (459)
T ss_pred             hhhHh-----hcccccccceeEecC-CCceeeccCccchhheeecccCc-EEEEecccccceeeEeECCCceEEeecCCC
Confidence            54332     358999999999996 56789999999999999999654 678899999999999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      ++++|||++..+.+..+..     +..-|+.|+|+| .|.+|++++.|+.++||......++..+    .+|++.|.+++
T Consensus       367 nt~kVWDLR~r~~ly~ipA-----H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL----aGHe~kV~s~D  437 (459)
T KOG0272|consen  367 NTCKVWDLRMRSELYTIPA-----HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL----AGHEGKVISLD  437 (459)
T ss_pred             CcEEEeeecccccceeccc-----ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh----cCCccceEEEE
Confidence            9999999998776544332     223589999998 7889999999999999998877766555    57999999999


Q ss_pred             ECCCCCeEEEeECCCcEEEEe
Q 024451          239 LSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       239 ~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      ++||+.+++|+|.|+++++|.
T Consensus       438 is~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  438 ISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             eccCCceEEEeccCceeeecc
Confidence            999999999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-38  Score=234.23  Aligned_cols=240  Identities=27%  Similarity=0.426  Sum_probs=195.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .+..++||++.+++++|+++++||+...       ...+.+.||...|.+++|+|++ +.+++|+.|++|++||...+.+
T Consensus        68 dv~~s~dg~~alS~swD~~lrlWDl~~g-------~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck  139 (315)
T KOG0279|consen   68 DVVLSSDGNFALSASWDGTLRLWDLATG-------ESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCK  139 (315)
T ss_pred             ceEEccCCceEEeccccceEEEEEecCC-------cEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEE
Confidence            3678999999999999999999999763       2567789999999999999976 5799999999999999987654


Q ss_pred             EEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ..+..    .++.+-|.++.|+|.. ..++++++.|++||+||++. .+....+.+|.+.++.++++|||...++|++||
T Consensus       140 ~t~~~----~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg  214 (315)
T KOG0279|consen  140 YTIHE----DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG  214 (315)
T ss_pred             EEEec----CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccEEEEEECCCCCEEecCCCCc
Confidence            43322    1237789999999875 67899999999999999974 445667889999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccc-----cCCccceEE
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL-----QNSHEGRIT  235 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~~v~  235 (267)
                      .+.+||++.++.+..+  .    ....|.+++|+|+..+|+++...+ |+|||+...+.+..+...     .+...-...
T Consensus       215 ~~~LwdL~~~k~lysl--~----a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cl  287 (315)
T KOG0279|consen  215 EAMLWDLNEGKNLYSL--E----AFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICL  287 (315)
T ss_pred             eEEEEEccCCceeEec--c----CCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhccccccccccccCCcEEE
Confidence            9999999988775332  1    234699999999998888886554 999999887665433211     011233467


Q ss_pred             EEEECCCCCeEEEeECCCcEEEEecC
Q 024451          236 CLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       236 ~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      +++|+++|..|.+|-.|+.|++|-+.
T Consensus       288 slaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  288 SLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEEcCCCcEEEeeecCCcEEEEEee
Confidence            78999999999999999999999754

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-38  Score=235.05  Aligned_cols=234  Identities=29%  Similarity=0.421  Sum_probs=192.9

Q ss_pred             CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451            9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE   88 (267)
Q Consensus         9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   88 (267)
                      ...|++++.|.++-+|++...+...+  .+.+.+.||...|..+..++++ ++.++++.|+++|+||+.+++....|.  
T Consensus        28 ~~~l~sasrDk~ii~W~L~~dd~~~G--~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~~t~~f~--  102 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSDDIKYG--VPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGESTRRFV--  102 (315)
T ss_pred             CceEEEcccceEEEEEEeccCccccC--ceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCCcEEEEEE--
Confidence            57899999999999999987643333  3567899999999999999975 689999999999999999987777664  


Q ss_pred             cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEe
Q 024451           89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFD  166 (267)
Q Consensus        89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd  166 (267)
                         +|...+.++++++ +++++++|+.|.+|++|++....+....-..|.+-|.|+.|+|+  ..++++++.|+++++||
T Consensus       103 ---GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWn  178 (315)
T KOG0279|consen  103 ---GHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWN  178 (315)
T ss_pred             ---ecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEc
Confidence               7999999999996 45678999999999999987433222222233788999999997  68999999999999999


Q ss_pred             CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeE
Q 024451          167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL  246 (267)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  246 (267)
                      +++-+....+.     ++...++.+++||||..+++|+.||++.+||+...+.+..+     .|...|.+++|+|+.-.|
T Consensus       179 l~~~~l~~~~~-----gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-----~a~~~v~sl~fspnrywL  248 (315)
T KOG0279|consen  179 LRNCQLRTTFI-----GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-----EAFDIVNSLCFSPNRYWL  248 (315)
T ss_pred             cCCcchhhccc-----cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-----cCCCeEeeEEecCCceeE
Confidence            99866554443     34457999999999999999999999999999988876544     588899999999986555


Q ss_pred             EEeECCCcEEEEecCc
Q 024451          247 CTGSWDTNLKIWAFGG  262 (267)
Q Consensus       247 ~sgs~dg~i~~w~~~~  262 (267)
                      + ...+-.|+||++..
T Consensus       249 ~-~at~~sIkIwdl~~  263 (315)
T KOG0279|consen  249 C-AATATSIKIWDLES  263 (315)
T ss_pred             e-eccCCceEEEeccc
Confidence            5 45677899999753

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.8e-36  Score=239.26  Aligned_cols=233  Identities=25%  Similarity=0.439  Sum_probs=198.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+.+|+.||+|+.||.+++|+...        .+..++..|+++|+++.|+..+ .+|++++.|+++.+||..++..
T Consensus       240 ~L~Wn~~G~~LatG~~~G~~riw~~~G--------~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~  310 (524)
T KOG0273|consen  240 SLDWNNDGTLLATGSEDGEARIWNKDG--------NLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTV  310 (524)
T ss_pred             eEEecCCCCeEEEeecCcEEEEEecCc--------hhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceE
Confidence            689999999999999999999999764        2567888999999999999865 6999999999999999988877


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...+.     -|+.....|.|..  ...|++.+.|+.|+++.+. ...+...+.+|.++|.++.|.|.+.+|++++.|++
T Consensus       311 ~q~f~-----~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~-~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T  382 (524)
T KOG0273|consen  311 KQQFE-----FHSAPALDVDWQS--NDEFATSSTDGCIHVCKVG-EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT  382 (524)
T ss_pred             EEeee-----eccCCccceEEec--CceEeecCCCceEEEEEec-CCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence            66653     2555556777863  4568999999999999886 45678889999999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC---------CEEEEEEeCCeEEEEeCCccceeeecccccCCccc
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG---------RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG  232 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  232 (267)
                      ++||..........+.     .+...|..+.|+|+|         ..+++++.|+.|++||...+.++..+    ..|..
T Consensus       383 lkiWs~~~~~~~~~l~-----~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f----~kH~~  453 (524)
T KOG0273|consen  383 LKIWSMGQSNSVHDLQ-----AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL----MKHQE  453 (524)
T ss_pred             eEeeecCCCcchhhhh-----hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee----ccCCC
Confidence            9999976654433322     223358889999865         36899999999999999998888765    46999


Q ss_pred             eEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          233 RITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      +|.+++|+|+|+|+|+|+.||.|.+|+.
T Consensus       454 pVysvafS~~g~ylAsGs~dg~V~iws~  481 (524)
T KOG0273|consen  454 PVYSVAFSPNGRYLASGSLDGCVHIWST  481 (524)
T ss_pred             ceEEEEecCCCcEEEecCCCCeeEeccc
Confidence            9999999999999999999999999974

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.8e-35  Score=215.58  Aligned_cols=243  Identities=20%  Similarity=0.341  Sum_probs=193.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .+...|+++.|+.|+.- .||+||+.....     .+..++.+|+..|++|.|..++ +.+++||+||++||||++....
T Consensus        45 rLeiTpdk~~LAaa~~q-hvRlyD~~S~np-----~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~  117 (311)
T KOG0315|consen   45 RLEITPDKKDLAAAGNQ-HVRLYDLNSNNP-----NPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSC  117 (311)
T ss_pred             eEEEcCCcchhhhccCC-eeEEEEccCCCC-----CceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCccc
Confidence            36788999999999876 699999976432     1467889999999999998864 7999999999999999987544


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...+      .|..+|+++..+| ++..++++..+|.|++||+.........+......|.++...|+|++++.+-..|.
T Consensus       118 qR~~------~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~  190 (311)
T KOG0315|consen  118 QRNY------QHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN  190 (311)
T ss_pred             chhc------cCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc
Confidence            3333      4778999999996 45578899999999999998543333333334567899999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEe-ecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc-ceeeecccccCCccceEEEEEE
Q 024451          162 CRLFDIRTGHQLQVYYQ-QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      .-+|++-..+....+.. +....+...+..+.+||++++|+++++|..++||+.... +...    ....|++.++..+|
T Consensus       191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~----~l~gh~rWvWdc~F  266 (311)
T KOG0315|consen  191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL----VLTGHQRWVWDCAF  266 (311)
T ss_pred             EEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE----EeecCCceEEeeee
Confidence            99999876443222211 111234457889999999999999999999999997765 2222    23679999999999


Q ss_pred             CCCCCeEEEeECCCcEEEEecCc
Q 024451          240 SADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      |.||+||++||.|+.+++|++..
T Consensus       267 S~dg~YlvTassd~~~rlW~~~~  289 (311)
T KOG0315|consen  267 SADGEYLVTASSDHTARLWDLSA  289 (311)
T ss_pred             ccCccEEEecCCCCceeeccccc
Confidence            99999999999999999999743

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.1e-34  Score=216.81  Aligned_cols=242  Identities=23%  Similarity=0.413  Sum_probs=199.3

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      ++..|++|+++|++++.||.+.|||.-..+ +      ...++-...-|..|+|+|++ +++++|+.|+...||++.+..
T Consensus        59 ~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn-K------~haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d  130 (343)
T KOG0286|consen   59 YAMDWSTDSRRIVSASQDGKLIVWDSFTTN-K------VHAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRD  130 (343)
T ss_pred             eeeEecCCcCeEEeeccCCeEEEEEccccc-c------eeEEecCceeEEEEEECCCC-CeEEecCcCceeEEEeccccc
Confidence            367899999999999999999999975432 1      12233345779999999976 689999999999999998652


Q ss_pred             eEEEe-CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeC
Q 024451           81 RTSVF-GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSD  158 (267)
Q Consensus        81 ~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  158 (267)
                      ..... ......+|...+.+..|..  +..++|++.|.++-+||++.+ +....+.+|.+.|.+++++| +++.|++|+-
T Consensus       131 ~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g-~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c  207 (343)
T KOG0286|consen  131 AEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETG-QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC  207 (343)
T ss_pred             ccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccc-eEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence            11111 1122368999999999975  456899999999999999864 56788999999999999999 8999999999


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      |+..++||++.+...+.|..+     ...|.+++|.|+|.-+++|+.|+..++||++....+..+..  ..-..+|++++
T Consensus       208 D~~aklWD~R~~~c~qtF~gh-----esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~--~~~~~gitSv~  280 (343)
T KOG0286|consen  208 DKSAKLWDVRSGQCVQTFEGH-----ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH--DSIICGITSVA  280 (343)
T ss_pred             ccceeeeeccCcceeEeeccc-----ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc--CcccCCceeEE
Confidence            999999999999888777543     34699999999999999999999999999988766654432  23456899999


Q ss_pred             ECCCCCeEEEeECCCcEEEEec
Q 024451          239 LSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       239 ~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ||..|++|..|..|.++.+||.
T Consensus       281 FS~SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  281 FSKSGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             EcccccEEEeeecCCceeEeec
Confidence            9999999999999999999985

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.9e-35  Score=219.95  Aligned_cols=240  Identities=27%  Similarity=0.422  Sum_probs=190.4

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++.|+|+|.+++|||.|..|.+|++....      +-...+++|++.|..+.|.+++ ..+++++.|++|+.||+++++
T Consensus        51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc------eN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG~  123 (338)
T KOG0265|consen   51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDC------ENFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETGK  123 (338)
T ss_pred             EEEEECCCCCeEeecCCcceEEEEeccccc------cceeeeccccceeEeeeeccCC-CEEEEecCCceEEEEecccce
Confidence            368899999999999999999999975432      1234567999999999999976 589999999999999999998


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc---------------------------------
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA---------------------------------  127 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~---------------------------------  127 (267)
                      +..-+     .+|..-++++.....+..++.+++.|+++++||++..                                 
T Consensus       124 ~~rk~-----k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~i  198 (338)
T KOG0265|consen  124 RIRKH-----KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDI  198 (338)
T ss_pred             eeehh-----ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCce
Confidence            76544     3566667766655445566777777777777777611                                 


Q ss_pred             -------ccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCC---e-eeEEEEeecCCCCCCcEEEEEEccC
Q 024451          128 -------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG---H-QLQVYYQQHGENEIPHVTSIAFSIS  196 (267)
Q Consensus       128 -------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~-~~~~~~~~~~~~~~~~v~~~~~s~~  196 (267)
                             ......+.||.++|+.+..+|+|.++.+-+.|.++++||++.-   + ++..+ +.+..+-......++|+|+
T Consensus       199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if-~g~~hnfeknlL~cswsp~  277 (338)
T KOG0265|consen  199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF-QGHIHNFEKNLLKCSWSPN  277 (338)
T ss_pred             eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe-ecchhhhhhhcceeeccCC
Confidence                   1123466799999999999999999999999999999998752   2 23333 2222222234567889999


Q ss_pred             CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEE
Q 024451          197 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI  257 (267)
Q Consensus       197 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~  257 (267)
                      ++++.+|+.|..+++||....+.+..+    .+|.+.|.++.|+|...+|.+++.|++|.+
T Consensus       278 ~~~i~ags~dr~vyvwd~~~r~~lykl----pGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  278 GTKITAGSADRFVYVWDTTSRRILYKL----PGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             CCccccccccceEEEeecccccEEEEc----CCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            999999999999999998777776655    579999999999999999999999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.9e-37  Score=238.09  Aligned_cols=236  Identities=23%  Similarity=0.432  Sum_probs=199.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .+.|.|+|+.|++|+..|...+|+...       .....++++|.++|.++.|++++ .+++||+.+|.|++|+.+....
T Consensus       101 ~v~WtPeGRRLltgs~SGEFtLWNg~~-------fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnnV  172 (464)
T KOG0284|consen  101 VVRWTPEGRRLLTGSQSGEFTLWNGTS-------FNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNNV  172 (464)
T ss_pred             eEEEcCCCceeEeecccccEEEecCce-------eeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccchhhh
Confidence            467999999999999999999999754       23455688999999999999965 6899999999999999865432


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                       .++    ...|...|.+++|+| ++..|++++.||.|+|||.... +..+.+.+|.-.|.+++|+|....++++|+|..
T Consensus       173 -k~~----~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~-kee~vL~GHgwdVksvdWHP~kgLiasgskDnl  245 (464)
T KOG0284|consen  173 -KII----QAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMP-KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNL  245 (464)
T ss_pred             -HHh----hHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCC-chhheeccCCCCcceeccCCccceeEEccCCce
Confidence             111    234568999999998 5567899999999999999754 456778999999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      |++||.++++++..+..     +...|..+.|++++++|++++.|..+++||.+.-+.+..+    ..|...|++++|+|
T Consensus       246 VKlWDprSg~cl~tlh~-----HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~----r~Hkkdv~~~~WhP  316 (464)
T KOG0284|consen  246 VKLWDPRSGSCLATLHG-----HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY----RGHKKDVTSLTWHP  316 (464)
T ss_pred             eEeecCCCcchhhhhhh-----ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh----hcchhhheeecccc
Confidence            99999999998765432     2346999999999999999999999999998865554433    57999999999999


Q ss_pred             -CCCeEEEeECCCcEEEEecC
Q 024451          242 -DGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       242 -~~~~l~sgs~dg~i~~w~~~  261 (267)
                       +..+|.+|+.||.|..|.+.
T Consensus       317 ~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  317 LNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             ccccceeeccCCCceEEEecc
Confidence             56788999999999999865

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.3e-36  Score=236.15  Aligned_cols=234  Identities=31%  Similarity=0.523  Sum_probs=196.3

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCC-eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +..|+++|.+++||+.+|.|+.|+..-+        ....+.+| .-.|++++|+|.+ ..++++|.|++|+|||.....
T Consensus       143 ~m~ws~~g~wmiSgD~gG~iKyWqpnmn--------nVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~k  213 (464)
T KOG0284|consen  143 TMKWSHNGTWMISGDKGGMIKYWQPNMN--------NVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPK  213 (464)
T ss_pred             eEEEccCCCEEEEcCCCceEEecccchh--------hhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCc
Confidence            4579999999999999999999986532        33444454 4899999999954 679999999999999998765


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ...++     .+|.-.+.+++|+| ...++++++.|..|++||.+.+. .+..+.+|...|..+.|.|++++|+++|+|.
T Consensus       214 ee~vL-----~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~-cl~tlh~HKntVl~~~f~~n~N~Llt~skD~  286 (464)
T KOG0284|consen  214 EERVL-----RGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGS-CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ  286 (464)
T ss_pred             hhhee-----ccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcc-hhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence            54444     57999999999997 46689999999999999998654 6778889999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      .++++|+++-+++..+..     +...+.++.|+|-. .+|.+|+.||.|..|.+...+.+   ..++..|...|++++|
T Consensus       287 ~~kv~DiR~mkEl~~~r~-----Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~---~~i~~AHd~~iwsl~~  358 (464)
T KOG0284|consen  287 SCKVFDIRTMKELFTYRG-----HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL---GEIPPAHDGEIWSLAY  358 (464)
T ss_pred             eEEEEehhHhHHHHHhhc-----chhhheeeccccccccceeeccCCCceEEEeccccccc---cCCCcccccceeeeec
Confidence            999999997666555432     33468999999965 46778899999999998754443   3345689999999999


Q ss_pred             CCCCCeEEEeECCCcEEEEe
Q 024451          240 SADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w~  259 (267)
                      +|-|.+|++||.|.++++|.
T Consensus       359 hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  359 HPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             cccceeEeecCCCcceeeec
Confidence            99999999999999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.1e-35  Score=243.30  Aligned_cols=244  Identities=23%  Similarity=0.362  Sum_probs=204.8

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++....+|.+|+|++.|+++++|.+....   ...-+.....+|++.|.+++++..+..+++++|.|+++++|++...+.
T Consensus       370 SL~~~~~g~llat~sKD~svilWr~~~~~---~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~  446 (775)
T KOG0319|consen  370 SLDVWSSGDLLATGSKDKSVILWRLNNNC---SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE  446 (775)
T ss_pred             eeeecccCcEEEEecCCceEEEEEecCCc---chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccc
Confidence            34434678899999999999999884321   122345567899999999999877778999999999999999975211


Q ss_pred             ---EEEeCCc-cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451           82 ---TSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus        82 ---~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  157 (267)
                         ...+..+ ....|...|+++++.| ++.+++||+.|++.+||+++ .......+.+|...+.++.|+|..+.++++|
T Consensus       447 ~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S  524 (775)
T KOG0319|consen  447 TAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGVWCVSFSKNDQLLATCS  524 (775)
T ss_pred             ccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeeccc-CceEEEEeeCCccceEEEEeccccceeEecc
Confidence               1111111 2346999999999996 57899999999999999998 4557788999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  237 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  237 (267)
                      .|++|+||.+.+..++..+-     ++...|..+.|-.++..|+++++||-+++|+..+.+.+.++    ..|++.|+++
T Consensus       525 gD~TvKIW~is~fSClkT~e-----GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl----D~H~DrvWaL  595 (775)
T KOG0319|consen  525 GDKTVKIWSISTFSCLKTFE-----GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL----DAHNDRVWAL  595 (775)
T ss_pred             CCceEEEEEeccceeeeeec-----CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh----hhccceeEEE
Confidence            99999999999999887763     33456899999999999999999999999999999888766    5799999999


Q ss_pred             EECCCCCeEEEeECCCcEEEEe
Q 024451          238 GLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       238 ~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      +.+|...++++|+.||.|.+|.
T Consensus       596 ~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  596 SVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             eecCccceeEecCCCeEEEEee
Confidence            9999999999999999999994

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-34  Score=244.48  Aligned_cols=241  Identities=28%  Similarity=0.554  Sum_probs=201.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|+++++++.|+++++||+..+      ....+++++|...|+++.|+|.+ +++++|+.|++|+|||+.++..
T Consensus       208 ~~~fs~d~~~l~s~s~D~tiriwd~~~~------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~  280 (456)
T KOG0266|consen  208 DVAFSPDGSYLLSGSDDKTLRIWDLKDD------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC  280 (456)
T ss_pred             eeEECCCCcEEEEecCCceEEEeeccCC------CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE
Confidence            5899999999999999999999999432      23678899999999999999988 7899999999999999999887


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-ceEEeeccccc--eeEEEEecCCCEEEEeeC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGD--VNTVKFFPDGNRFGTGSD  158 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~  158 (267)
                      ...+     .+|...|..+++++ +++++++++.|+.|++||+..... ....+.++...  ++++.|+|+++++++++.
T Consensus       281 ~~~l-----~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~  354 (456)
T KOG0266|consen  281 VRKL-----KGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL  354 (456)
T ss_pred             EEee-----eccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence            7766     47999999999986 567888999999999999975442 24455555544  899999999999999999


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCc-cceEEEE
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-EGRITCL  237 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~  237 (267)
                      |+.+++||++.++....+..+...  ..++.+..+++.+.++++|+.|+.|++||..+...+..+    ..| ...+..+
T Consensus       355 d~~~~~w~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l----~~h~~~~~~~~  428 (456)
T KOG0266|consen  355 DRTLKLWDLRSGKSVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL----EGHSKAAVSDL  428 (456)
T ss_pred             CCeEEEEEccCCcceeeecccCCc--ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh----cCCCCCceecc
Confidence            999999999988777665443221  134556667889999999999999999999876554433    457 7889999


Q ss_pred             EECCCCCeEEEeE--CCCcEEEEecC
Q 024451          238 GLSADGSALCTGS--WDTNLKIWAFG  261 (267)
Q Consensus       238 ~~~p~~~~l~sgs--~dg~i~~w~~~  261 (267)
                      +++|..+++++++  .|+.+++|...
T Consensus       429 ~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  429 SSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ccCCCcCeeeecCcCCCceEEEecCC
Confidence            9999999999998  69999999864

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.9e-34  Score=240.72  Aligned_cols=241  Identities=33%  Similarity=0.550  Sum_probs=200.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC-Ce
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~   80 (267)
                      ++.|+|+|+.+++++.|+++++|+......     ...+.+.+|...|+.++|+|++ .++++++.|++|+|||+.. +.
T Consensus       164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~  237 (456)
T KOG0266|consen  164 CVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGR  237 (456)
T ss_pred             EEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCC-cEEEEecCCceEEEeeccCCCe
Confidence            468999999999999999999999843210     2455668999999999999976 4899999999999999943 35


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ...++     .+|...+++++|++.. +++++|+.|++|+|||++. .+..+.+.+|.+.|.+++|+++++++++++.|+
T Consensus       238 ~~~~l-----~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~  310 (456)
T KOG0266|consen  238 NLKTL-----KGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRT-GECVRKLKGHSDGISGLAFSPDGNLLVSASYDG  310 (456)
T ss_pred             EEEEe-----cCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccC-CeEEEeeeccCCceEEEEECCCCCEEEEcCCCc
Confidence            55555     4899999999999876 8999999999999999986 567889999999999999999999999999999


Q ss_pred             cEEEEeCCCCee--eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccc---eEE
Q 024451          161 TCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG---RIT  235 (267)
Q Consensus       161 ~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~v~  235 (267)
                      .|++||+.++..  ...+..  ..... .++.++|+|++.++++++.|+.+++||+...+......    .|..   ++.
T Consensus       311 ~i~vwd~~~~~~~~~~~~~~--~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~----~~~~~~~~~~  383 (456)
T KOG0266|consen  311 TIRVWDLETGSKLCLKLLSG--AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT----GHSNLVRCIF  383 (456)
T ss_pred             cEEEEECCCCceeeeecccC--CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec----ccCCcceeEe
Confidence            999999998873  233222  12222 68999999999999999999999999998777665543    3332   555


Q ss_pred             EEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          236 CLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       236 ~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ....++.++++++|+.|+.|.+|++..
T Consensus       384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  384 SPTLSTGGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             cccccCCCCeEEEEeCCceEEEEeCCc
Confidence            666688999999999999999999764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-35  Score=216.45  Aligned_cols=240  Identities=23%  Similarity=0.337  Sum_probs=200.0

Q ss_pred             ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      .++|++.- +.+++++-||++++||...+.      .+...++.|+.+|+++.|++.....++++|.|++||+|+...+.
T Consensus        65 dV~Wse~~e~~~~~a~GDGSLrl~d~~~~s------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   65 DVAWSENHENQVIAASGDGSLRLFDLTMPS------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             EeeecCCCcceEEEEecCceEEEeccCCCC------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            56788644 778899999999999976654      25678899999999999999877888899999999999999888


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDD  159 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d  159 (267)
                      .+.++     .+|...|....|+|....++++++.|+.+++||++...+.+. +..|...|.++.|+. +.+.+++|+.|
T Consensus       139 Sv~Tf-----~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd  212 (311)
T KOG0277|consen  139 SVQTF-----NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVD  212 (311)
T ss_pred             ceEee-----cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCC
Confidence            88776     479999999999999999999999999999999997766554 788999999999988 56789999999


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      +.|+.||+++-+......    .++...|..++|||.. ..|++++.|-.++|||...+......   ...|.+-+..+.
T Consensus       213 ~~vr~wDir~~r~pl~eL----~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~---~~~HtEFv~g~D  285 (311)
T KOG0277|consen  213 NLVRGWDIRNLRTPLFEL----NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIET---VDHHTEFVCGLD  285 (311)
T ss_pred             ceEEEEehhhccccceee----cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhh---hhccceEEeccc
Confidence            999999998765432111    2344579999999975 47788999999999998765543322   146888999999


Q ss_pred             ECC-CCCeEEEeECCCcEEEEec
Q 024451          239 LSA-DGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       239 ~~p-~~~~l~sgs~dg~i~~w~~  260 (267)
                      ||+ ++.++|+++.|..+.||..
T Consensus       286 ws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  286 WSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cccccCceeeecccccceeeecc
Confidence            997 5679999999999999974

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=7.4e-36  Score=236.39  Aligned_cols=239  Identities=26%  Similarity=0.437  Sum_probs=197.7

Q ss_pred             eeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +.|.| .+.+|+++|.|+.|+||++-..      ..+.+++.+|+.+|..++|++++. .++|+|.|+.|++||.++|..
T Consensus       220 i~~fp~~~hLlLS~gmD~~vklW~vy~~------~~~lrtf~gH~k~Vrd~~~s~~g~-~fLS~sfD~~lKlwDtETG~~  292 (503)
T KOG0282|consen  220 IQWFPKKGHLLLSGGMDGLVKLWNVYDD------RRCLRTFKGHRKPVRDASFNNCGT-SFLSASFDRFLKLWDTETGQV  292 (503)
T ss_pred             hhhccceeeEEEecCCCceEEEEEEecC------cceehhhhcchhhhhhhhccccCC-eeeeeecceeeeeeccccceE
Confidence            45777 8899999999999999998642      248899999999999999999764 688999999999999999987


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...+.      -...+.++.++|.+.++|++|+.|+.|+-||++. .+.+..+..|-+.|..+.|-++++.|++.++|++
T Consensus       293 ~~~f~------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks  365 (503)
T KOG0282|consen  293 LSRFH------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS  365 (503)
T ss_pred             EEEEe------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-hHHHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence            77653      2345678999998889999999999999999985 4567778889999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecC-------------------------------------------CCCCCcEEEEEEccCCC
Q 024451          162 CRLFDIRTGHQLQVYYQQHG-------------------------------------------ENEIPHVTSIAFSISGR  198 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~-------------------------------------------~~~~~~v~~~~~s~~~~  198 (267)
                      ++||+.+.+-.+........                                           ..-.+.-..+.|||+|+
T Consensus       366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~  445 (503)
T KOG0282|consen  366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR  445 (503)
T ss_pred             EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence            99999876422211100000                                           00013345788999999


Q ss_pred             EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC-CCeEEEeECCCcEEEEe
Q 024451          199 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-GSALCTGSWDTNLKIWA  259 (267)
Q Consensus       199 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~sgs~dg~i~~w~  259 (267)
                      +|++|.+||.+++||..+-+.+..+    +.|.+++..+.|+|. ..-+|+|+.||.|++|+
T Consensus       446 ~l~SGdsdG~v~~wdwkt~kl~~~l----kah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  446 TLCSGDSDGKVNFWDWKTTKLVSKL----KAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eEEeecCCccEEEeechhhhhhhcc----ccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            9999999999999999887776554    679999999999996 45789999999999995

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.5e-34  Score=240.46  Aligned_cols=251  Identities=21%  Similarity=0.322  Sum_probs=197.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCC----------------------------CC---------------CCC----
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSP----------------------------TD---------------KDG----   34 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~----------------------------~~---------------~~~----   34 (267)
                      ++.|++||++||+||+|+.|+||.+...                            ..               ...    
T Consensus       272 ~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p  351 (712)
T KOG0283|consen  272 AMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLP  351 (712)
T ss_pred             EEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCC
Confidence            6789999999999999999999998650                            00               000    


Q ss_pred             ------CCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCe
Q 024451           35 ------NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR  108 (267)
Q Consensus        35 ------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  108 (267)
                            .-++.+.++||.+.|-.+.|+.+  ++|+++|.|++||+|++....++.+|      .|.+.|+||+|+|.+++
T Consensus       352 ~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F------~HndfVTcVaFnPvDDr  423 (712)
T KOG0283|consen  352 LKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVF------SHNDFVTCVAFNPVDDR  423 (712)
T ss_pred             CccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEE------ecCCeeEEEEecccCCC
Confidence                  01245678999999999999875  58999999999999999999888887      49999999999999999


Q ss_pred             EEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeec--CCC-CC
Q 024451          109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--GEN-EI  185 (267)
Q Consensus       109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~-~~  185 (267)
                      +|++|+-|+.||||++.. .+....... ..-|++++|.|+|++.+.|+-+|.+++|+++..+......-..  ..+ ..
T Consensus       424 yFiSGSLD~KvRiWsI~d-~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~  501 (712)
T KOG0283|consen  424 YFISGSLDGKVRLWSISD-KKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG  501 (712)
T ss_pred             cEeecccccceEEeecCc-CeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence            999999999999999863 334433333 3779999999999999999999999999998765432211111  111 11


Q ss_pred             CcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          186 PHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       186 ~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      ..|+.+.|.|... -+++.++|..|+|||.+...++..+......+.  -....|+.||++|+++|.|..|.+|++..+.
T Consensus       502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S--Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS--QISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc--ceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            2599999886544 577788999999999977777766654433332  3568899999999999999999999986554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7e-35  Score=242.93  Aligned_cols=197  Identities=30%  Similarity=0.523  Sum_probs=173.2

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +.|.|+|+.++|++++.|+++|+|.+....       ..-.++||..+|++++|+|.+ -++||||.|++-++|......
T Consensus       455 yg~sFsPd~rfLlScSED~svRLWsl~t~s-------~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~  526 (707)
T KOG0263|consen  455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-------CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNK  526 (707)
T ss_pred             eeeeecccccceeeccCCcceeeeecccce-------eEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCC
Confidence            458899999999999999999999987632       455678999999999999975 589999999999999988766


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      +..++     .+|-.++.|+.|+| +..++++|+.|.+||+||+..+ ..++.+.||.++|.+++|+|+|.+|++|+.|+
T Consensus       527 PlRif-----aghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~  599 (707)
T KOG0263|consen  527 PLRIF-----AGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGPVTALAFSPCGRYLASGDEDG  599 (707)
T ss_pred             chhhh-----cccccccceEEECC-cccccccCCCCceEEEEEcCCC-cEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence            65555     47999999999997 5678999999999999999754 46899999999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  217 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  217 (267)
                      .|++||+.+++.+..+..+     ...|.++.|+.+|..|++|+.|..|++||+...
T Consensus       600 ~I~iWDl~~~~~v~~l~~H-----t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  600 LIKIWDLANGSLVKQLKGH-----TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cEEEEEcCCCcchhhhhcc-----cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999999998876655443     346999999999999999999999999997643

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.6e-34  Score=219.72  Aligned_cols=238  Identities=24%  Similarity=0.363  Sum_probs=202.7

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-e
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-R   81 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~   81 (267)
                      ..|+|+-...++++.|+++++||....+       +.+.++||++.|..++|...+ .++++++.|=.+++||.++.. +
T Consensus       114 v~~hp~~~~v~~as~d~tikv~D~~tg~-------~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~~~c  185 (406)
T KOG0295|consen  114 VIFHPSEALVVSASEDATIKVFDTETGE-------LERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTFFRC  185 (406)
T ss_pred             eeeccCceEEEEecCCceEEEEEccchh-------hhhhhhccccceeEEEEecCc-cEEEecCCccchhheeHHHHHHH
Confidence            3578999999999999999999987633       578999999999999999876 689999999999999997632 1


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      +.     ...+|+..|.++.+.|.+ ..+++++.|.+|+.|++.+ ...+..+.+|...+..++.+.||..+++++.|.+
T Consensus       186 ~k-----s~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~t-g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt  258 (406)
T KOG0295|consen  186 IK-----SLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDT-GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT  258 (406)
T ss_pred             HH-----HhcCcccceeeEEEEecC-CeeeecccccceeEEeccc-ceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence            11     224788899999999765 6789999999999999975 5678899999999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC---------------CCEEEEEEeCCeEEEEeCCccceeeecccc
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---------------GRLLFAGYSNGDCYVWDTLLAKVVLNLGSL  226 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~  226 (267)
                      +++|-+.+.++...+..++     -++.+++|.|.               ++++.+++.|+.|++||+.++..+..+   
T Consensus       259 l~vW~~~t~~~k~~lR~hE-----h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL---  330 (406)
T KOG0295|consen  259 LRVWVVATKQCKAELREHE-----HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL---  330 (406)
T ss_pred             EEEEEeccchhhhhhhccc-----cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE---
Confidence            9999998876554443322     24677777552               358999999999999999999988776   


Q ss_pred             cCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          227 QNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       227 ~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                       .+|...|..++|+|.|+||+|+..|+++++|++...+
T Consensus       331 -~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~  367 (406)
T KOG0295|consen  331 -VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ  367 (406)
T ss_pred             -ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence             5799999999999999999999999999999987665

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.1e-34  Score=222.85  Aligned_cols=247  Identities=21%  Similarity=0.372  Sum_probs=190.6

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      |.|+++|++|||++.|.+.-+|.+....    ..++..++.+|..+|..+.|+|++ ++|++|+.|..+++||+.++...
T Consensus       230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~----~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~~  304 (519)
T KOG0293|consen  230 LQFSHNGKYLASASKDSTAIIWIVVYDV----HFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDLR  304 (519)
T ss_pred             EEEcCCCeeEeeccCCceEEEEEEecCc----ceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCcchhh
Confidence            6799999999999999999999987532    366788899999999999999975 79999999999999999999877


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec-cccceeEEEEecCCCEEEEeeCCCc
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ..++    .++...+.+++|.|. +..+++|+.|+.+..||... . ....-++ ....|.+++..+||+++++.+.|..
T Consensus       305 ~~y~----~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDg-n-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~  377 (519)
T KOG0293|consen  305 HLYP----SGLGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDG-N-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKK  377 (519)
T ss_pred             hhcc----cCcCCCcceeEEccC-CceeEecCCCCcEEEecCCc-c-hhhcccccccceeEEEEEcCCCcEEEEEecccc
Confidence            7664    345678889999975 55689999999999999863 2 2222222 2356899999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecC--------C------------------------------CCCCcEEEEEEcc-CCCEEEE
Q 024451          162 CRLFDIRTGHQLQVYYQQHG--------E------------------------------NEIPHVTSIAFSI-SGRLLFA  202 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~--------~------------------------------~~~~~v~~~~~s~-~~~~l~~  202 (267)
                      |++++..+..+......++.        .                              .....+-.-||.- +..++++
T Consensus       378 i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS  457 (519)
T KOG0293|consen  378 IRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS  457 (519)
T ss_pred             eeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEe
Confidence            99998765322111100000        0                              0011233445543 4478999


Q ss_pred             EEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC-CCeEEEeECCCcEEEEecCceEe
Q 024451          203 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-GSALCTGSWDTNLKIWAFGGYRR  265 (267)
Q Consensus       203 g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~sgs~dg~i~~w~~~~~~~  265 (267)
                      |++|+.|+||+..+++.+..+    .+|...|+|++|+|. ..++|+||.||+||||.....+|
T Consensus       458 GSED~kvyIWhr~sgkll~~L----sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~~r  517 (519)
T KOG0293|consen  458 GSEDSKVYIWHRISGKLLAVL----SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDNNR  517 (519)
T ss_pred             cCCCceEEEEEccCCceeEee----cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcccc
Confidence            999999999999888887665    579999999999995 56799999999999998765433

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-33  Score=222.74  Aligned_cols=234  Identities=27%  Similarity=0.428  Sum_probs=199.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +..|..||++|+.|+.+|.|++||..+       ....+.+.+|..+|+.+.|.|++...+++|+.|+.+++||+.+...
T Consensus        73 s~~fR~DG~LlaaGD~sG~V~vfD~k~-------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v  145 (487)
T KOG0310|consen   73 SVDFRSDGRLLAAGDESGHVKVFDMKS-------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV  145 (487)
T ss_pred             EEEeecCCeEEEccCCcCcEEEecccc-------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence            567899999999999999999999543       2367889999999999999999999999999999999999998763


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...     ..+|++.|.+.+++|.++++++||+.||+||+||++.....+..+ .|..+|..+.+-|.|..+++++. ..
T Consensus       146 ~~~-----l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~  218 (487)
T KOG0310|consen  146 QAE-----LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NS  218 (487)
T ss_pred             EEE-----ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-Ce
Confidence            222     368999999999999999999999999999999998765555556 48899999999999999999885 49


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      +++||+.++.++.....    ++...|+|+++..++..|++|+-||.+++||....+.+..+     ...++|.+++.+|
T Consensus       219 vkVWDl~~G~qll~~~~----~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-----~~~~pvLsiavs~  289 (487)
T KOG0310|consen  219 VKVWDLTTGGQLLTSMF----NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-----KYPGPVLSIAVSP  289 (487)
T ss_pred             EEEEEecCCceehhhhh----cccceEEEEEeecCCceEeecccccceEEEEccceEEEEee-----ecccceeeEEecC
Confidence            99999987665543322    23346999999999999999999999999998777877665     3568999999999


Q ss_pred             CCCeEEEeECCCcEEEE
Q 024451          242 DGSALCTGSWDTNLKIW  258 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w  258 (267)
                      +++.++.|-.||.+.+=
T Consensus       290 dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  290 DDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             CCceEEEecccceeeee
Confidence            99999999999987664

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5e-33  Score=205.96  Aligned_cols=239  Identities=22%  Similarity=0.379  Sum_probs=189.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .++|+|.|++|++|+.|.++.||.=.     .+.+.+..++.||.++|.|++|++++ .+||+++.|++|-||.+..+..
T Consensus        66 svAwsp~g~~La~aSFD~t~~Iw~k~-----~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddE  139 (312)
T KOG0645|consen   66 SVAWSPHGRYLASASFDATVVIWKKE-----DGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDE  139 (312)
T ss_pred             eeeecCCCcEEEEeeccceEEEeecC-----CCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCc
Confidence            47999999999999999999999643     34466788999999999999999975 6999999999999999985433


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc--cceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  159 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  159 (267)
                      ....  ...+.|...|.-+.|+|. ..+|++++.|.+||+|.-....  .....+.+|...|.+++|+|.|..|+++++|
T Consensus       140 fec~--aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD  216 (312)
T KOG0645|consen  140 FECI--AVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD  216 (312)
T ss_pred             EEEE--eeeccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC
Confidence            2222  234689999999999975 4588999999999999754211  2467888999999999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc--ceeee-cccccCCccceEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA--KVVLN-LGSLQNSHEGRITC  236 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~--~~~~~-~~~~~~~~~~~v~~  236 (267)
                      ++++||-..+.-  .       ..+...+..+.|.  ...|++++.|+.|++|.-...  .+..+ +......|+..|++
T Consensus       217 ~tv~Iw~~~~~~--~-------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs  285 (312)
T KOG0645|consen  217 GTVSIWRLYTDL--S-------GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS  285 (312)
T ss_pred             cceEeeeeccCc--c-------hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccce
Confidence            999999854311  0       1122357788887  668999999999999964321  11111 12234578999999


Q ss_pred             EEECCC-CCeEEEeECCCcEEEEec
Q 024451          237 LGLSAD-GSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       237 ~~~~p~-~~~l~sgs~dg~i~~w~~  260 (267)
                      +.|+|. .+.|++|+.||.|++|.+
T Consensus       286 V~w~p~~~~~L~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  286 VQWNPKVSNRLASGGDDGIVNFWEL  310 (312)
T ss_pred             EEEcCCCCCceeecCCCceEEEEEe
Confidence            999994 789999999999999975

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6e-33  Score=230.47  Aligned_cols=240  Identities=25%  Similarity=0.371  Sum_probs=191.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++++|||++++||+.||.|+|||....       -+..++..|++.|+.+.|...+ +.++++|.||+||.||+.....
T Consensus       355 ~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-------fC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  355 SLAYSPDGQLIATGAEDGKVKVWNTQSG-------FCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             eEEECCCCcEEEeccCCCcEEEEeccCc-------eEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccce
Confidence            5789999999999999999999997642       2677899999999999999865 5799999999999999987665


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ..++.    .+......++++.|+ +.++++|+.|. .|.+|++++ .+.+..+.||+++|.++.|+|.++.|++++.|+
T Consensus       427 fRTft----~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qT-GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk  500 (893)
T KOG0291|consen  427 FRTFT----SPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQT-GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK  500 (893)
T ss_pred             eeeec----CCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeec-CeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence            55553    223344567888765 55777788777 499999975 567888999999999999999999999999999


Q ss_pred             cEEEEeCCCCe-eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccc-------------
Q 024451          161 TCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL-------------  226 (267)
Q Consensus       161 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-------------  226 (267)
                      +||+||+-... ..+.+..      ...+..++|+|+|.-+++++.||+|.+||.+.......+...             
T Consensus       501 TVRiW~if~s~~~vEtl~i------~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~  574 (893)
T KOG0291|consen  501 TVRIWDIFSSSGTVETLEI------RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRI  574 (893)
T ss_pred             eEEEEEeeccCceeeeEee------ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccccccee
Confidence            99999985432 2222211      124789999999999999999999999997655433221110             


Q ss_pred             c---CCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          227 Q---NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       227 ~---~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .   .......+++++++||+++++|+..+.|.||++.
T Consensus       575 ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~  612 (893)
T KOG0291|consen  575 TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVP  612 (893)
T ss_pred             ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence            0   0123578999999999999999999999999863

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4e-35  Score=224.28  Aligned_cols=221  Identities=25%  Similarity=0.479  Sum_probs=184.5

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG   87 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   87 (267)
                      |...+++|..|++|++||...       ..+.+++.||++.|.|++|.   .+.+++||.|.+|++||+++++.+.++  
T Consensus       206 DD~kiVSGlrDnTikiWD~n~-------~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tl--  273 (499)
T KOG0281|consen  206 DDEKIVSGLRDNTIKIWDKNS-------LECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTL--  273 (499)
T ss_pred             cchhhhcccccCceEEecccc-------HHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHH--
Confidence            456799999999999999765       34778899999999999984   358999999999999999999877665  


Q ss_pred             ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc--cceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEE
Q 024451           88 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF  165 (267)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw  165 (267)
                         -+|.+.+..+.|+.   .++++++.|.++.+||+..+.  ...+.+.||...|+.+.|+  .+++++++.|++|++|
T Consensus       274 ---ihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW  345 (499)
T KOG0281|consen  274 ---IHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVW  345 (499)
T ss_pred             ---hhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEE
Confidence               36899999999963   478999999999999986543  2345677999999999995  4699999999999999


Q ss_pred             eCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCe
Q 024451          166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA  245 (267)
Q Consensus       166 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  245 (267)
                      ++.+.+.+..+..     +...|.++.+  .++++++|++|..|++||...++.+.-+    .+|++-|.|+.|.  .+-
T Consensus       346 ~~st~efvRtl~g-----HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL----eGHEeLvRciRFd--~kr  412 (499)
T KOG0281|consen  346 STSTCEFVRTLNG-----HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL----EGHEELVRCIRFD--NKR  412 (499)
T ss_pred             eccceeeehhhhc-----ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH----hchHHhhhheeec--Cce
Confidence            9998876654432     2334666654  6789999999999999999988876543    6899999999996  578


Q ss_pred             EEEeECCCcEEEEecC
Q 024451          246 LCTGSWDTNLKIWAFG  261 (267)
Q Consensus       246 l~sgs~dg~i~~w~~~  261 (267)
                      +++|+.||.|++|++.
T Consensus       413 IVSGaYDGkikvWdl~  428 (499)
T KOG0281|consen  413 IVSGAYDGKIKVWDLQ  428 (499)
T ss_pred             eeeccccceEEEEecc
Confidence            9999999999999974

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.8e-32  Score=246.50  Aligned_cols=240  Identities=20%  Similarity=0.338  Sum_probs=191.2

Q ss_pred             ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+| ++.+|++++.|++|++||+...       .....+.+|.+.|++++|+|.++.+|++|+.|++|++||+.++.
T Consensus       537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~-------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~  609 (793)
T PLN00181        537 GICWNSYIKSQVASSNFEGVVQVWDVARS-------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV  609 (793)
T ss_pred             eEEeccCCCCEEEEEeCCCeEEEEECCCC-------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence            456775 5789999999999999998642       24566789999999999998656789999999999999999876


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ....+.      +...+.++.|.++++.++++|+.|+.|++||++........+.+|...|.++.|. ++.++++++.|+
T Consensus       610 ~~~~~~------~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~  682 (793)
T PLN00181        610 SIGTIK------TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDN  682 (793)
T ss_pred             EEEEEe------cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCC
Confidence            655542      2346888999777788999999999999999975544566677899999999997 678999999999


Q ss_pred             cEEEEeCCCC------eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec--c------c-
Q 024451          161 TCRLFDIRTG------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL--G------S-  225 (267)
Q Consensus       161 ~i~iwd~~~~------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~------~-  225 (267)
                      +|++||++..      +.+..+.     .+...+..++|++++.+|++|+.||.+++|+..........  .      . 
T Consensus       683 ~ikiWd~~~~~~~~~~~~l~~~~-----gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~  757 (793)
T PLN00181        683 TLKLWDLSMSISGINETPLHSFM-----GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL  757 (793)
T ss_pred             EEEEEeCCCCccccCCcceEEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccc
Confidence            9999999753      2222221     22345788999999999999999999999997544322111  0      0 


Q ss_pred             ccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          226 LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       226 ~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ....|...|.+++|+|++.+|++|+.||.|+||++
T Consensus       758 ~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        758 EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            01235678999999999999999999999999986

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-33  Score=215.47  Aligned_cols=236  Identities=26%  Similarity=0.450  Sum_probs=203.4

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      ++++|+..|++|++++.|-.+++||.+..      ..+.+.+.+|.-.|.++.|.|.+ .+++|++.|.+|++|+..++.
T Consensus       154 ~di~~~a~Gk~l~tcSsDl~~~LWd~~~~------~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~  226 (406)
T KOG0295|consen  154 FDISFDASGKYLATCSSDLSAKLWDFDTF------FRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGY  226 (406)
T ss_pred             eEEEEecCccEEEecCCccchhheeHHHH------HHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccce
Confidence            46889999999999999999999998642      23667889999999999999986 589999999999999999999


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC----------C
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD----------G  150 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~----------~  150 (267)
                      .+.++.     +|..-+..+.++. ++.++++++.|.++++|-+.. ......+..|+-+|.+++|.|.          +
T Consensus       227 cv~t~~-----~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~  299 (406)
T KOG0295|consen  227 CVKTFP-----GHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATG  299 (406)
T ss_pred             eEEecc-----CchHhEEEEEecC-CeeEEEecCCCceEEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccC
Confidence            988874     6888888888874 678999999999999998864 3344567788888999988653          1


Q ss_pred             -----CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccc
Q 024451          151 -----NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS  225 (267)
Q Consensus       151 -----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  225 (267)
                           .++++++.|++||+||+.++.++..+..     +...|..++|+|.|+||+++..|+.+++||++..+.....  
T Consensus       300 ~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g-----hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~--  372 (406)
T KOG0295|consen  300 STNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG-----HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL--  372 (406)
T ss_pred             CCCCccEEEeecccceEEEEeccCCeEEEEEec-----ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc--
Confidence                 4789999999999999999988776543     2347999999999999999999999999999887766554  


Q ss_pred             ccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          226 LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       226 ~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                        ..|+.-+++++|+.+..++++|+-|.++++|-
T Consensus       373 --~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  373 --EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             --CCCcceeEEEecCCCCceEEeccccceeeeee
Confidence              46888999999999999999999999999994

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.6e-32  Score=245.50  Aligned_cols=242  Identities=19%  Similarity=0.312  Sum_probs=188.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCC--CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDK--DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      +++|+|+|+++++||.|++|++|+.......  ....+ ...+. +...|.++.|+|....+|++++.|++|++||+.++
T Consensus       488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~-~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~  565 (793)
T PLN00181        488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYP-VVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS  565 (793)
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCcccccccccccc-eEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC
Confidence            4789999999999999999999997532110  00011 11222 34678999999866678999999999999999987


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEe-cCCCEEEEeeC
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF-PDGNRFGTGSD  158 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~  158 (267)
                      .....+     .+|...|.+++|++.++.++++++.|+.|++||++.. .....+..+ ..+.++.|+ +++.++++|+.
T Consensus       566 ~~~~~~-----~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~~~~~~~~~-~~v~~v~~~~~~g~~latgs~  638 (793)
T PLN00181        566 QLVTEM-----KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-VSIGTIKTK-ANICCVQFPSESGRSLAFGSA  638 (793)
T ss_pred             eEEEEe-----cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-cEEEEEecC-CCeEEEEEeCCCCCEEEEEeC
Confidence            665554     4689999999999777788999999999999999753 345555544 578999995 46899999999


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc------ceeeecccccCCccc
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA------KVVLNLGSLQNSHEG  232 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~  232 (267)
                      |+.|++||+++.+......    ..+...|.++.|. ++.++++++.|+.|++||+...      +.+..+    ..|..
T Consensus       639 dg~I~iwD~~~~~~~~~~~----~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~----~gh~~  709 (793)
T PLN00181        639 DHKVYYYDLRNPKLPLCTM----IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF----MGHTN  709 (793)
T ss_pred             CCeEEEEECCCCCccceEe----cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE----cCCCC
Confidence            9999999998765322111    1234568999997 7789999999999999998643      222222    46888


Q ss_pred             eEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          233 RITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .+.+++|+|++++||+|+.|+.|++|+..
T Consensus       710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        710 VKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             CeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence            89999999999999999999999999853

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.4e-33  Score=215.06  Aligned_cols=233  Identities=24%  Similarity=0.434  Sum_probs=199.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      |+++.|...+++||+.|++++|||+...       .+..++.||..-|..+++++. ..|+++++.|+.|+.||++..+.
T Consensus       156 ~vavdP~n~wf~tgs~DrtikIwDlatg-------~LkltltGhi~~vr~vavS~r-HpYlFs~gedk~VKCwDLe~nkv  227 (460)
T KOG0285|consen  156 SVAVDPGNEWFATGSADRTIKIWDLATG-------QLKLTLTGHIETVRGVAVSKR-HPYLFSAGEDKQVKCWDLEYNKV  227 (460)
T ss_pred             EEeeCCCceeEEecCCCceeEEEEcccC-------eEEEeecchhheeeeeeeccc-CceEEEecCCCeeEEEechhhhh
Confidence            5789999999999999999999999763       256788999999999999985 46999999999999999987654


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      +..+     -||-..|.+++.+|. ...+++++.|.++|+||++. +..+..+.+|..+|.++.+.|....+++|+.|++
T Consensus       228 IR~Y-----hGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRt-r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t  300 (460)
T KOG0285|consen  228 IRHY-----HGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRT-RASVHVLSGHTNPVASVMCQPTDPQVITGSHDST  300 (460)
T ss_pred             HHHh-----ccccceeEEEecccc-ceeEEecCCcceEEEeeecc-cceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence            4332     478899999999975 45789999999999999985 4567889999999999999998889999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      |++||++.++.+..+..     +...+.+++.+|....+++++.| .++-|++..+..+.++    ..|.+-|++++.+.
T Consensus       301 vrlWDl~agkt~~tlt~-----hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl----sgh~~iintl~~ns  370 (460)
T KOG0285|consen  301 VRLWDLRAGKTMITLTH-----HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL----SGHNAIINTLSVNS  370 (460)
T ss_pred             EEEeeeccCceeEeeec-----ccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc----ccccceeeeeeecc
Confidence            99999999987765532     23458999999999889988777 4789998887777664    57899999999987


Q ss_pred             CCCeEEEeECCCcEEEEec
Q 024451          242 DGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~  260 (267)
                      || ++++|+..|.+-+||.
T Consensus       371 D~-v~~~G~dng~~~fwdw  388 (460)
T KOG0285|consen  371 DG-VLVSGGDNGSIMFWDW  388 (460)
T ss_pred             Cc-eEEEcCCceEEEEEec
Confidence            65 7788999999999986

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.7e-32  Score=217.59  Aligned_cols=248  Identities=24%  Similarity=0.413  Sum_probs=189.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      |.-|+|||..++|+|.||++.+||-...+ .   +.....-.+|++.|++++|+|+. ..++++|.|.++||||+.+...
T Consensus       195 ~VRysPDG~~Fat~gsDgki~iyDGktge-~---vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~sl  269 (603)
T KOG0318|consen  195 CVRYSPDGSRFATAGSDGKIYIYDGKTGE-K---VGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSL  269 (603)
T ss_pred             eEEECCCCCeEEEecCCccEEEEcCCCcc-E---EEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccce
Confidence            56799999999999999999999976532 1   11122245899999999999986 4799999999999999987654


Q ss_pred             EEEeCC--------------------------------------ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEe
Q 024451           82 TSVFGG--------------------------------------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD  123 (267)
Q Consensus        82 ~~~~~~--------------------------------------~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd  123 (267)
                      +..+..                                      ....+|...|+++..++. +..+.+|+.||.|.-|+
T Consensus       270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d-~~~i~SgsyDG~I~~W~  348 (603)
T KOG0318|consen  270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD-GKTIYSGSYDGHINSWD  348 (603)
T ss_pred             EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC-CCEEEeeccCceEEEEe
Confidence            443321                                      112589999999999975 47889999999999998


Q ss_pred             CCCccc-----------------------------------------------------c-------------------e
Q 024451          124 TRVASR-----------------------------------------------------A-------------------V  131 (267)
Q Consensus       124 ~~~~~~-----------------------------------------------------~-------------------~  131 (267)
                      ...+..                                                     +                   +
T Consensus       349 ~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~i  428 (603)
T KOG0318|consen  349 SGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDI  428 (603)
T ss_pred             cCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcE
Confidence            632100                                                     0                   0


Q ss_pred             EEeeccc--------cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE
Q 024451          132 RTFHGHE--------GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG  203 (267)
Q Consensus       132 ~~~~~~~--------~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g  203 (267)
                      ..++.+.        -...+++++|+++.++.|++|++++||.+...........   ..+..+++.++|||++.+|++|
T Consensus       429 v~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~---~~h~a~iT~vaySpd~~yla~~  505 (603)
T KOG0318|consen  429 VLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL---LEHRAAITDVAYSPDGAYLAAG  505 (603)
T ss_pred             EEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee---ecccCCceEEEECCCCcEEEEe
Confidence            0111111        1135688899999999999999999999976543322111   2234679999999999999999


Q ss_pred             EeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          204 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       204 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      ...+.+.+||....+...+  ++ .-|...|.|++|+|+.+++|+||.|..|.||.+.
T Consensus       506 Da~rkvv~yd~~s~~~~~~--~w-~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  506 DASRKVVLYDVASREVKTN--RW-AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             ccCCcEEEEEcccCceecc--ee-eeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence            9999999999988776322  22 2389999999999999999999999999999864

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.3e-33  Score=201.21  Aligned_cols=233  Identities=25%  Similarity=0.399  Sum_probs=193.8

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +..|+-+|++.+++|.|++|++|+....       .+.+++.+|..+|..++.+.++ ..+++|+.|+.+.+||+++++.
T Consensus        22 avryN~dGnY~ltcGsdrtvrLWNp~rg-------~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGkv   93 (307)
T KOG0316|consen   22 AVRYNVDGNYCLTCGSDRTVRLWNPLRG-------ALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGKV   93 (307)
T ss_pred             EEEEccCCCEEEEcCCCceEEeeccccc-------ceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCee
Confidence            3568999999999999999999997542       3788999999999999888765 4699999999999999999987


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc-cceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ...+     .+|...|+.+.|++. ...+++|+.|.++++||.+... +++..+..-.+.|.++...  +..+++|+.||
T Consensus        94 ~Rr~-----rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DG  165 (307)
T KOG0316|consen   94 DRRF-----RGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDG  165 (307)
T ss_pred             eeec-----ccccceeeEEEecCc-ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCC
Confidence            7766     479999999999964 5688999999999999988543 4666666667889988875  45799999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccc--eEEEEE
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG--RITCLG  238 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~  238 (267)
                      ++|.||++.++...-++       ..+|++++|++++++.++++.|+.+++.|..+++.+....    +|..  .-...+
T Consensus       166 tvRtydiR~G~l~sDy~-------g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk----Ghkn~eykldc~  234 (307)
T KOG0316|consen  166 TVRTYDIRKGTLSSDYF-------GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK----GHKNMEYKLDCC  234 (307)
T ss_pred             cEEEEEeecceeehhhc-------CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc----ccccceeeeeee
Confidence            99999999987654332       2369999999999999999999999999999998876553    3432  223456


Q ss_pred             ECCCCCeEEEeECCCcEEEEecC
Q 024451          239 LSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       239 ~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      ++....++++||+||.+.+|++-
T Consensus       235 l~qsdthV~sgSEDG~Vy~wdLv  257 (307)
T KOG0316|consen  235 LNQSDTHVFSGSEDGKVYFWDLV  257 (307)
T ss_pred             ecccceeEEeccCCceEEEEEec
Confidence            67777899999999999999973

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=3.2e-31  Score=223.40  Aligned_cols=251  Identities=18%  Similarity=0.203  Sum_probs=184.2

Q ss_pred             eCCCCCeEEEccCCCeEEEeecCCC-----CCCCCCCc-ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451            5 FSPTGQSVACGGLDSVCSIFNLNSP-----TDKDGNLP-VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         5 ~~~~g~~l~~~~~d~~v~~w~~~~~-----~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      .++++..+++++.+.....|+....     ....+..+ ....+.+|.+.|++++|+|.++.+|++|+.|++|++||+.+
T Consensus        28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~  107 (493)
T PTZ00421         28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE  107 (493)
T ss_pred             ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence            4577777888888888888875431     11112211 12347899999999999995556899999999999999976


Q ss_pred             CeeEEE--eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEe
Q 024451           79 GLRTSV--FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG  156 (267)
Q Consensus        79 ~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  156 (267)
                      +.....  -......+|...|.+++|+|....++++++.|+.|++||++.. .....+.+|...|.+++|+|++++|+++
T Consensus       108 ~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla~spdG~lLatg  186 (493)
T PTZ00421        108 EGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSLEWNLDGSLLCTT  186 (493)
T ss_pred             CccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEEEEECCCCEEEEe
Confidence            421100  0001225799999999999876678999999999999999754 4566778899999999999999999999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE----eCCeEEEEeCCccceeeecccccCCccc
Q 024451          157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAKVVLNLGSLQNSHEG  232 (267)
Q Consensus       157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~  232 (267)
                      +.|++|++||+++++.+..+.. +.   ......+.|.+++..+++++    .|+.|++||++..........  ..+..
T Consensus       187 s~Dg~IrIwD~rsg~~v~tl~~-H~---~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~--~d~~~  260 (493)
T PTZ00421        187 SKDKKLNIIDPRDGTIVSSVEA-HA---SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD--LDQSS  260 (493)
T ss_pred             cCCCEEEEEECCCCcEEEEEec-CC---CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec--cCCCC
Confidence            9999999999998876554332 21   12245677888877776643    479999999876543222211  12334


Q ss_pred             eEEEEEECCCCCeEEEeEC-CCcEEEEecCc
Q 024451          233 RITCLGLSADGSALCTGSW-DTNLKIWAFGG  262 (267)
Q Consensus       233 ~v~~~~~~p~~~~l~sgs~-dg~i~~w~~~~  262 (267)
                      .+....|+|++++|++|+. |+.|++|++..
T Consensus       261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            5666789999999998885 99999999854

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.9e-32  Score=198.62  Aligned_cols=232  Identities=26%  Similarity=0.448  Sum_probs=184.8

Q ss_pred             CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee--EEEeCC
Q 024451           10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--TSVFGG   87 (267)
Q Consensus        10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~   87 (267)
                      -+|+++|.|-+||.|.....       .+.++++-..+.|..+...|++ ..|++| ....||+||+++...  +..|  
T Consensus        11 viLvsA~YDhTIRfWqa~tG-------~C~rTiqh~dsqVNrLeiTpdk-~~LAaa-~~qhvRlyD~~S~np~Pv~t~--   79 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTG-------ICSRTIQHPDSQVNRLEITPDK-KDLAAA-GNQHVRLYDLNSNNPNPVATF--   79 (311)
T ss_pred             eEEEeccCcceeeeeehhcC-------eEEEEEecCccceeeEEEcCCc-chhhhc-cCCeeEEEEccCCCCCceeEE--
Confidence            57999999999999987642       3677776566789999999975 456555 456899999998654  3333  


Q ss_pred             ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeC
Q 024451           88 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  167 (267)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  167 (267)
                         .+|...|.++.|.. +++.+.+|+.||++||||++.. ...+.+ .|..+|+++..+|+...|++|.++|.|++||+
T Consensus        80 ---e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~-~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl  153 (311)
T KOG0315|consen   80 ---EGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSL-SCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDL  153 (311)
T ss_pred             ---eccCCceEEEEEee-cCeEEEecCCCceEEEEeccCc-ccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence               36889999999985 6789999999999999999852 233444 47899999999999999999999999999999


Q ss_pred             CCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee---ecccccCCccceEEEEEECCCCC
Q 024451          168 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL---NLGSLQNSHEGRITCLGLSADGS  244 (267)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~  244 (267)
                      ....+...+..+    ....+.++...|+|.+++++.+.|..++|++.......   .... .+.|++-+..+-+||+++
T Consensus       154 ~~~~c~~~liPe----~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k-~~ah~~~il~C~lSPd~k  228 (311)
T KOG0315|consen  154 GENSCTHELIPE----DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHK-FQAHNGHILRCLLSPDVK  228 (311)
T ss_pred             cCCccccccCCC----CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhh-eecccceEEEEEECCCCc
Confidence            877554433222    22468999999999999999999999999986532211   1111 246899999999999999


Q ss_pred             eEEEeECCCcEEEEecCce
Q 024451          245 ALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       245 ~l~sgs~dg~i~~w~~~~~  263 (267)
                      +||++|.|.+++||...++
T Consensus       229 ~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  229 YLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             EEEeecCCceEEEEecCCc
Confidence            9999999999999987766

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.9e-34  Score=216.76  Aligned_cols=247  Identities=26%  Similarity=0.377  Sum_probs=199.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCC-CCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPT-DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      |.-|+|||++|++|+.||-+.+||+.... .++.+......+..+..+|.|+.|+.+. +.+++|+.||.|++|.++++.
T Consensus       218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG~  296 (508)
T KOG0275|consen  218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETGQ  296 (508)
T ss_pred             heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEEEEEecch
Confidence            34599999999999999999999987531 1111112233455688999999999875 579999999999999999998


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      +...|    ..+|...|.++.|+..+ ..+++++.|.++|+.-++. .+..+.+++|..-|+.+.|.++|.++++++.||
T Consensus       297 ClRrF----drAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKS-GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg  370 (508)
T KOG0275|consen  297 CLRRF----DRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKS-GKCLKEFRGHSSYVNEATFTDDGHHIISASSDG  370 (508)
T ss_pred             HHHHh----hhhhccCeeEEEEccCc-chhhcccccceEEEecccc-chhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence            76654    35799999999999654 5678999999999999875 567888999999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecC------------------------------------------CCCCCcEEEEEEccCCC
Q 024451          161 TCRLFDIRTGHQLQVYYQQHG------------------------------------------ENEIPHVTSIAFSISGR  198 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~------------------------------------------~~~~~~v~~~~~s~~~~  198 (267)
                      +|++|+.++.+++..+.....                                          ..+.+...+.+.||.|.
T Consensus       371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGe  450 (508)
T KOG0275|consen  371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGE  450 (508)
T ss_pred             cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCc
Confidence            999999988655433321100                                          00112234567899999


Q ss_pred             EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          199 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       199 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      ++.+.++|+.++-|...+++....+    ..|+..+..++-+|..+.||+-+.||.+++|.
T Consensus       451 wiYcigED~vlYCF~~~sG~LE~tl----~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  451 WIYCIGEDGVLYCFSVLSGKLERTL----PVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEEEccCcEEEEEEeecCceeeee----ecccccccccccCcccchhhhhcccchhhhcC
Confidence            9999999999999999888776544    46888899999999999999999999999995

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-31  Score=197.98  Aligned_cols=241  Identities=22%  Similarity=0.352  Sum_probs=193.8

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      +.|+.+|.+|.++++|.+..+|-....       ....++.||++.|+||...-+. .++++|+.|.++++||+++++++
T Consensus        16 iKyN~eGDLlFscaKD~~~~vw~s~nG-------erlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~l   87 (327)
T KOG0643|consen   16 IKYNREGDLLFSCAKDSTPTVWYSLNG-------ERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQL   87 (327)
T ss_pred             EEecCCCcEEEEecCCCCceEEEecCC-------ceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEE
Confidence            578999999999999999999975332       3677899999999999998754 58999999999999999999887


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEe----cCCCeEEEEeCCCcc------cceEEeeccccceeEEEEecCCCE
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSG----SCDSTARLWDTRVAS------RAVRTFHGHEGDVNTVKFFPDGNR  152 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~----~~d~~i~iwd~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~  152 (267)
                      ..+.      -...+..+.|+..+...+++.    +..+.|.++|++...      .+...+..+...++.+.|.|-+++
T Consensus        88 a~~k------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~  161 (327)
T KOG0643|consen   88 ATWK------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET  161 (327)
T ss_pred             EEee------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence            7663      345688888987655444432    456789999987432      345666677889999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec---------
Q 024451          153 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL---------  223 (267)
Q Consensus       153 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---------  223 (267)
                      +++|.+||.|.+||.+++++.....+.|    ...|+.++++++..++++|+.|..-++||..+...+..+         
T Consensus       162 ii~Ghe~G~is~~da~~g~~~v~s~~~h----~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a  237 (327)
T KOG0643|consen  162 IIAGHEDGSISIYDARTGKELVDSDEEH----SSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA  237 (327)
T ss_pred             EEEecCCCcEEEEEcccCceeeechhhh----ccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccce
Confidence            9999999999999999987665433333    336999999999999999999999999997554322110         


Q ss_pred             ------------------------------------------ccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          224 ------------------------------------------GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       224 ------------------------------------------~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                                                                ....++|-++|++++|+|+|+..+||+.||.||+..|.
T Consensus       238 aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  238 AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence                                                      01123588999999999999999999999999998764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.5e-32  Score=210.65  Aligned_cols=236  Identities=24%  Similarity=0.385  Sum_probs=186.6

Q ss_pred             CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC--CeeEEEeeCCCeEEEEeCCCCeeEEEeC
Q 024451            9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWDITTGLRTSVFG   86 (267)
Q Consensus         9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~   86 (267)
                      +++|+||++||++++||...        +....+.||.++|.++++...+  ...++++|.|.++++|..+.+.......
T Consensus       115 ~~~IltgsYDg~~riWd~~G--------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~  186 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLKG--------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL  186 (423)
T ss_pred             CceEEEeecCCeeEEEecCC--------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH
Confidence            68999999999999999864        3567788999999998886433  2358999999999999887664322111


Q ss_pred             CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc------------------------ccceEEeecccccee
Q 024451           87 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA------------------------SRAVRTFHGHEGDVN  142 (267)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~------------------------~~~~~~~~~~~~~i~  142 (267)
                       ....||+..|.++...++ +..+++|+.|..|+||+....                        +.++..+.+|..+|.
T Consensus       187 -~~~~GHk~~V~sVsv~~s-gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs  264 (423)
T KOG0313|consen  187 -KVCRGHKRSVDSVSVDSS-GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVS  264 (423)
T ss_pred             -hHhcccccceeEEEecCC-CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccccee
Confidence             112489999999999865 557899999999999983211                        124557789999999


Q ss_pred             EEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeee
Q 024451          143 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN  222 (267)
Q Consensus       143 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~  222 (267)
                      ++.|++ ...+.+++.|.+|+.||+.+++........      ....++..+|....|++|++|..+++||.+.+..-..
T Consensus       265 ~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v  337 (423)
T KOG0313|consen  265 SVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV  337 (423)
T ss_pred             eEEEcC-CCceEeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence            999987 678999999999999999998876654321      2478999999999999999999999999876532111


Q ss_pred             cccccCCccceEEEEEECCCCC-eEEEeECCCcEEEEecCc
Q 024451          223 LGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       223 ~~~~~~~~~~~v~~~~~~p~~~-~l~sgs~dg~i~~w~~~~  262 (267)
                      ... ..+|...|.++.|+|... +|++||.|+++++||...
T Consensus       338 ~~s-~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS  377 (423)
T KOG0313|consen  338 SQS-LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS  377 (423)
T ss_pred             EEe-eecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence            111 147999999999999655 578999999999999754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=6.5e-31  Score=201.97  Aligned_cols=240  Identities=24%  Similarity=0.417  Sum_probs=196.1

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      ++++.+|+.++++|||.|....+|+....       +....+.+|+..|+|+.|+.++ .+||||+.+|.|+||+..++.
T Consensus        68 Favsl~P~~~l~aTGGgDD~AflW~~~~g-------e~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~  139 (399)
T KOG0296|consen   68 FAVSLHPNNNLVATGGGDDLAFLWDISTG-------EFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGG  139 (399)
T ss_pred             EEEEeCCCCceEEecCCCceEEEEEccCC-------cceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCc
Confidence            47889999999999999999999998653       2556788999999999999865 699999999999999999987


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ....+.     .--..+.-+.|+| ..++++.|+.||.+-+|.+... ...+.+.+|+.++++=.|.|+|+.++++..||
T Consensus       140 ~~~~~~-----~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg  212 (399)
T KOG0296|consen  140 EQWKLD-----QEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG  212 (399)
T ss_pred             eEEEee-----cccCceEEEEecc-cccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence            665552     2234677888997 5788999999999999998743 56788899999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecC-CC--------------------------------------------------------
Q 024451          161 TCRLFDIRTGHQLQVYYQQHG-EN--------------------------------------------------------  183 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~-~~--------------------------------------------------------  183 (267)
                      +|++||+++++++....+... ..                                                        
T Consensus       213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~  292 (399)
T KOG0296|consen  213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI  292 (399)
T ss_pred             eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence            999999998866543321000 00                                                        


Q ss_pred             ---------------------------------CCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCc
Q 024451          184 ---------------------------------EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  230 (267)
Q Consensus       184 ---------------------------------~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~  230 (267)
                                                       +...|..+.|-+ ..+|++++.+|.|++||.+++......    .+|
T Consensus       293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y----~GH  367 (399)
T KOG0296|consen  293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY----TGH  367 (399)
T ss_pred             ccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE----ecC
Confidence                                             112345566665 567888888888888888888776654    579


Q ss_pred             cceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          231 EGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       231 ~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ...|.+++++|++++++++|.|++.++|..
T Consensus       368 ~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  368 QMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             chheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            999999999999999999999999999974

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.3e-30  Score=221.10  Aligned_cols=237  Identities=16%  Similarity=0.199  Sum_probs=172.1

Q ss_pred             EccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-EEEe--CCccc
Q 024451           14 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVF--GGEFQ   90 (267)
Q Consensus        14 ~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~--~~~~~   90 (267)
                      +||.++.+++|+....       +....+.+|.+.|.+++|+|..+.+|++|+.|++|++||+.++.. ...+  .....
T Consensus        49 gGG~~gvI~L~~~~r~-------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L  121 (568)
T PTZ00420         49 GGGLIGAIRLENQMRK-------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL  121 (568)
T ss_pred             CCCceeEEEeeecCCC-------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe
Confidence            3677888999986531       345678899999999999997667899999999999999976421 1000  00112


Q ss_pred             cCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q 024451           91 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  170 (267)
Q Consensus        91 ~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  170 (267)
                      .+|...|.+++|+|....++++++.|+.|++||++... ....+. |...|.+++|+|+|++|++++.|+.|+|||++++
T Consensus       122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg  199 (568)
T PTZ00420        122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ  199 (568)
T ss_pred             ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence            47889999999998766667899999999999998544 334443 5678999999999999999999999999999998


Q ss_pred             eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC----CeEEEEeCCc-cceeeecccccCCccceEEEEEECCCCCe
Q 024451          171 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSA  245 (267)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d----g~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  245 (267)
                      +.+..+..+........+....|++++.++++++.+    +.|+|||++. .+.+... .+ ..+.+.+......++|.+
T Consensus       200 ~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~-~l-d~~~~~L~p~~D~~tg~l  277 (568)
T PTZ00420        200 EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM-SI-DNASAPLIPHYDESTGLI  277 (568)
T ss_pred             cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE-Ee-cCCccceEEeeeCCCCCE
Confidence            776554332211001122334567898888887765    4799999875 3333222 11 223445555555677999


Q ss_pred             EEEeECCCcEEEEecC
Q 024451          246 LCTGSWDTNLKIWAFG  261 (267)
Q Consensus       246 l~sgs~dg~i~~w~~~  261 (267)
                      +++|+.|+.|++|++.
T Consensus       278 ~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        278 YLIGKGDGNCRYYQHS  293 (568)
T ss_pred             EEEEECCCeEEEEEcc
Confidence            9999999999999873

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.4e-32  Score=219.65  Aligned_cols=233  Identities=23%  Similarity=0.385  Sum_probs=197.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +|.|-+-.+++++|+.|..||+|++.+.       .....+.+|.+.|.|++.+|+. .+++|+|.|-+|++||.+..-.
T Consensus        60 a~kfiaRknWiv~GsDD~~IrVfnynt~-------ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa  131 (794)
T KOG0276|consen   60 AAKFIARKNWIVTGSDDMQIRVFNYNTG-------EKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWA  131 (794)
T ss_pred             hheeeeccceEEEecCCceEEEEecccc-------eeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCcee
Confidence            4667778899999999999999998753       2456789999999999999975 6899999999999999987643


Q ss_pred             -EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC--CCEEEEeeC
Q 024451           82 -TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--GNRFGTGSD  158 (267)
Q Consensus        82 -~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~  158 (267)
                       ..+|     .+|+..|-++++.|.+...|++++-|++|++|++.. ..+...+.+|...|+|+.|-+.  ..++++|+.
T Consensus       132 ~~qtf-----eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD  205 (794)
T KOG0276|consen  132 CEQTF-----EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD  205 (794)
T ss_pred             eeeEE-----cCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCC
Confidence             3333     489999999999999999999999999999999974 4467788999999999999874  469999999


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      |.+++|||..+.++++.+.     ++...|+.++|+|.-.++++|++||.++||+..+.+....+    ....++++|++
T Consensus       206 D~tiKvWDyQtk~CV~TLe-----GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL----n~gleRvW~I~  276 (794)
T KOG0276|consen  206 DLTIKVWDYQTKSCVQTLE-----GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL----NYGLERVWCIA  276 (794)
T ss_pred             CceEEEeecchHHHHHHhh-----cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh----hcCCceEEEEe
Confidence            9999999999988876542     33446999999999999999999999999998776654333    23557899999


Q ss_pred             ECCCCCeEEEeECCCcEEE
Q 024451          239 LSADGSALCTGSWDTNLKI  257 (267)
Q Consensus       239 ~~p~~~~l~sgs~dg~i~~  257 (267)
                      -.+.++.++.|..+|.|.+
T Consensus       277 ~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  277 AHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             ecCCCCeEEEeccCCcEEE
Confidence            9998888999988887654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.6e-30  Score=205.25  Aligned_cols=237  Identities=35%  Similarity=0.569  Sum_probs=195.1

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++++|++++.||.+++|+.....       ....+.+|...+..+.|.|++ .++++++.|+.|++||+.++..
T Consensus        14 ~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~   85 (289)
T cd00200          14 CVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGEC   85 (289)
T ss_pred             EEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCcccc
Confidence            57899999999999999999999986532       345567899999999999976 5799999999999999987654


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...+     ..|...+.++.+.+. .+++++++.|+.+++||++. .+....+..|...+.++.|+|++.++++++.|+.
T Consensus        86 ~~~~-----~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  158 (289)
T cd00200          86 VRTL-----TGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVET-GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT  158 (289)
T ss_pred             eEEE-----eccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCC-cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence            4444     257778999999875 56777777799999999874 3456667788889999999999888888888999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      +++||+++++....+..     +...+.+++|+|+++.+++++.+|.+++||....+....+    ..|...+.+++|+|
T Consensus       159 i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~----~~~~~~i~~~~~~~  229 (289)
T cd00200         159 IKLWDLRTGKCVATLTG-----HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL----RGHENGVNSVAFSP  229 (289)
T ss_pred             EEEEEccccccceeEec-----CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch----hhcCCceEEEEEcC
Confidence            99999987766554431     2236899999999999999999999999998876655433    35777999999999


Q ss_pred             CCCeEEEeECCCcEEEEecCc
Q 024451          242 DGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ++.++++++.||.+++|++..
T Consensus       230 ~~~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         230 DGYLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             CCcEEEEEcCCCcEEEEEcCC
Confidence            999999998899999999763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.3e-30  Score=205.60  Aligned_cols=234  Identities=38%  Similarity=0.608  Sum_probs=192.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .+.|+|+++.+++++.|+.+++|+....       .....+.+|...|.++.|.|+ ..++++++.|+.|++||+.++..
T Consensus        56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~  127 (289)
T cd00200          56 DVAASADGTYLASGSSDKTIRLWDLETG-------ECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKC  127 (289)
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCcc-------cceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEE
Confidence            5789999999999999999999998752       134456688889999999997 45777777899999999987665


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...+.     .|...+.++.+++. .+++++++.|+.+++||++. .+....+..|...+.++.|+|+++.+++++.|+.
T Consensus       128 ~~~~~-----~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  200 (289)
T cd00200         128 LTTLR-----GHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT  200 (289)
T ss_pred             EEEec-----cCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccc-cccceeEecCccccceEEECCCcCEEEEecCCCc
Confidence            55442     57778999999875 56777777799999999874 3456667788889999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      +++||++.++....+.     .+...+.+++|++++.++++++.+|.+++||....+....+    ..|...+.+++|+|
T Consensus       201 i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~----~~~~~~i~~~~~~~  271 (289)
T cd00200         201 IKLWDLSTGKCLGTLR-----GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL----SGHTNSVTSLAWSP  271 (289)
T ss_pred             EEEEECCCCceecchh-----hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc----cccCCcEEEEEECC
Confidence            9999998766544331     12236899999999888888888999999998876655444    36788999999999


Q ss_pred             CCCeEEEeECCCcEEEEe
Q 024451          242 DGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~  259 (267)
                      ++++|++++.||.+++|+
T Consensus       272 ~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         272 DGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCCEEEEecCCCeEEecC
Confidence            999999999999999995

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=5.1e-33  Score=203.98  Aligned_cols=241  Identities=25%  Similarity=0.372  Sum_probs=193.5

Q ss_pred             ceeeC---CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451            2 TCAFS---PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         2 ~~~~~---~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      .++|+   |+|-.|++++.|+.--+=+-+.     +  ....++.||++.|+++..+.+ ....++++.|-+-++||.-+
T Consensus        19 dl~~s~itp~g~flisa~kd~~pmlr~g~t-----g--dwigtfeghkgavw~~~l~~n-a~~aasaaadftakvw~a~t   90 (334)
T KOG0278|consen   19 DLAFSPITPDGYFLISASKDGKPMLRNGDT-----G--DWIGTFEGHKGAVWSATLNKN-ATRAASAAADFTAKVWDAVT   90 (334)
T ss_pred             EEeccCCCCCceEEEEeccCCCchhccCCC-----C--CcEEeeeccCcceeeeecCch-hhhhhhhcccchhhhhhhhh
Confidence            45665   6999999999998754443332     1  256789999999999888763 45678999999999999998


Q ss_pred             CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC
Q 024451           79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD  158 (267)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  158 (267)
                      +..+..|      .|..-|.+++|+. +.+.+++|+.++.+||||++....+...+.+|.+.|..+.|....+.+++...
T Consensus        91 gdelhsf------~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad  163 (334)
T KOG0278|consen   91 GDELHSF------EHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD  163 (334)
T ss_pred             hhhhhhh------hhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence            8766554      3777888999986 45678999999999999998777778888999999999999998899999999


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCC----------------------------------CCCcEEEEEEccCCCEEEEEE
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGEN----------------------------------EIPHVTSIAFSISGRLLFAGY  204 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~----------------------------------~~~~v~~~~~s~~~~~l~~g~  204 (267)
                      |++||+||.+++...+.+...+...                                  ....|.+.+++|+..++++|+
T Consensus       164 d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGg  243 (334)
T KOG0278|consen  164 DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGG  243 (334)
T ss_pred             CCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecC
Confidence            9999999999988766543322110                                  012355667778888888888


Q ss_pred             eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          205 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       205 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      +|+.++-||..+++.+...   .+.|.++|.|+.|+|+|+..|+||.||+|+||..
T Consensus       244 ed~~~~kfDy~TgeEi~~~---nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  244 EDFKVYKFDYNTGEEIGSY---NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             cceEEEEEeccCCceeeec---ccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence            8888888888877665432   3679999999999999999999999999999975

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-31  Score=217.46  Aligned_cols=239  Identities=22%  Similarity=0.355  Sum_probs=203.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++.|+|...+++++-..|.|.|||.++..       ..+.+.-..-+|.++.|.+.. +++++|+.|..||+|+.++.++
T Consensus        18 sVd~HPtePw~la~LynG~V~IWnyetqt-------mVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~ek   89 (794)
T KOG0276|consen   18 SVDFHPTEPWILAALYNGDVQIWNYETQT-------MVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNTGEK   89 (794)
T ss_pred             eeecCCCCceEEEeeecCeeEEEecccce-------eeeeeeecccchhhheeeecc-ceEEEecCCceEEEEeccccee
Confidence            46799999999999999999999987643       455666667889999999864 6999999999999999999999


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDG  160 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~  160 (267)
                      +..|.     +|.+.|.+++++|. ..+++|++.|-.|++||-...=.....+.+|.--|.+++|.| |.+.||+++-|+
T Consensus        90 V~~Fe-----AH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr  163 (794)
T KOG0276|consen   90 VKTFE-----AHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR  163 (794)
T ss_pred             eEEee-----ccccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence            98884     69999999999974 568899999999999998754455677899999999999999 678999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC--CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS--GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      +|++|.+.+......+.     .+...|.++++-+-  ..+|++|+.|..+++||.++...+..+    .+|...|..+.
T Consensus       164 TVKVWslgs~~~nfTl~-----gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL----eGHt~Nvs~v~  234 (794)
T KOG0276|consen  164 TVKVWSLGSPHPNFTLE-----GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL----EGHTNNVSFVF  234 (794)
T ss_pred             cEEEEEcCCCCCceeee-----ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh----hcccccceEEE
Confidence            99999998765544443     23346899998654  469999999999999999888777655    57889999999


Q ss_pred             ECCCCCeEEEeECCCcEEEEecCce
Q 024451          239 LSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       239 ~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      |+|.-.++++||.||++|||.-..+
T Consensus       235 fhp~lpiiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  235 FHPELPIIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             ecCCCcEEEEecCCccEEEecCcce
Confidence            9999999999999999999975443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=6.4e-32  Score=203.95  Aligned_cols=250  Identities=26%  Similarity=0.399  Sum_probs=199.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCC------C-----CCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNS------P-----TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT   70 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~------~-----~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~   70 (267)
                      +.+|+|||.+++||+.|.+|++.|++.      +     ......-|+.|++..|..+|.++.|+|.+ ..|++|+.|++
T Consensus       117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre-~ILiS~srD~t  195 (430)
T KOG0640|consen  117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE-TILISGSRDNT  195 (430)
T ss_pred             eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-heEEeccCCCe
Confidence            357999999999999999999999872      1     11223347899999999999999999975 68999999999


Q ss_pred             EEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce--EEeeccccceeEEEEec
Q 024451           71 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV--RTFHGHEGDVNTVKFFP  148 (267)
Q Consensus        71 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~~  148 (267)
                      |+++|.........+.   .......+.++.|+|. +.+++.|...-.+++||+++....+  ..-.+|.+.|+++.+++
T Consensus       196 vKlFDfsK~saKrA~K---~~qd~~~vrsiSfHPs-GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~  271 (430)
T KOG0640|consen  196 VKLFDFSKTSAKRAFK---VFQDTEPVRSISFHPS-GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS  271 (430)
T ss_pred             EEEEecccHHHHHHHH---HhhccceeeeEeecCC-CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC
Confidence            9999997543222221   1124567899999975 5678888888999999997543211  12346889999999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc----
Q 024451          149 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG----  224 (267)
Q Consensus       149 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~----  224 (267)
                      .++..++++.||.|++||--+++++..+...|+.   ..|.+..|+.+++++++.+.|..+++|.+.+++.+....    
T Consensus       272 t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g---sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~  348 (430)
T KOG0640|consen  272 TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG---SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGT  348 (430)
T ss_pred             CccEEEEeccCCcEEeeccccHHHHHHHHhhcCC---ceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCc
Confidence            9999999999999999999888887766555543   468999999999999999999999999986655432210    


Q ss_pred             -----------------------------------------cccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          225 -----------------------------------------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       225 -----------------------------------------~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                                                               .+.-+|++.+..+.-||.+.-+++||.|..+|+|.
T Consensus       349 tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  349 TGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             ccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence                                                     11224899999999999999999999999999995

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.4e-31  Score=217.80  Aligned_cols=239  Identities=23%  Similarity=0.431  Sum_probs=198.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC-CeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-QTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-~~v~iwd~~~~~   80 (267)
                      +++|++..++|++|-..|...+|.+..-       .+...+.--..+|..+.|+..++ +|+.|+.. |.+-+|+.++..
T Consensus       270 aa~fH~~t~~lvvgFssG~f~LyelP~f-------~lih~LSis~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEs  341 (893)
T KOG0291|consen  270 AAAFHKGTNLLVVGFSSGEFGLYELPDF-------NLIHSLSISDQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSES  341 (893)
T ss_pred             eeeccCCceEEEEEecCCeeEEEecCCc-------eEEEEeecccceeeEEEecccCC-EEEEcCCccceEEEEEeeccc
Confidence            5779999999999999999999998652       24444444456788999988765 78877665 899999998764


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      -+  +   .+++|...+.+++++| ++++++||+.||+|||||... .-....+..|+..|+.+.|+..++.+++.+-||
T Consensus       342 YV--l---KQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~~llssSLDG  414 (893)
T KOG0291|consen  342 YV--L---KQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG  414 (893)
T ss_pred             ee--e---eccccccceeeEEECC-CCcEEEeccCCCcEEEEeccC-ceEEEEeccCCCceEEEEEEecCCEEEEeecCC
Confidence            32  2   1368999999999996 577899999999999999864 446778889999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC-eEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      +||.||+........+..    .......+++.+|.|..+.+|..|. .|++|++++++.+..+    .+|++||.+++|
T Consensus       415 tVRAwDlkRYrNfRTft~----P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL----sGHEgPVs~l~f  486 (893)
T KOG0291|consen  415 TVRAWDLKRYRNFRTFTS----PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL----SGHEGPVSGLSF  486 (893)
T ss_pred             eEEeeeecccceeeeecC----CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh----cCCCCcceeeEE
Confidence            999999987666555433    2233568888999999999999886 8999999999877544    689999999999


Q ss_pred             CCCCCeEEEeECCCcEEEEecCce
Q 024451          240 SADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      +|++..||+||+|++||+|++.+.
T Consensus       487 ~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  487 SPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             ccccCeEEeccccceEEEEEeecc
Confidence            999999999999999999997544

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7.4e-31  Score=207.60  Aligned_cols=235  Identities=23%  Similarity=0.375  Sum_probs=198.1

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++.|+..|++|++++.|+++.+||.....       ....+.-|..+--.|.|-..  ..+++++.|+.|+++.+....
T Consensus       280 ~slKWnk~G~yilS~~vD~ttilwd~~~g~-------~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~  350 (524)
T KOG0273|consen  280 FSLKWNKKGTYILSGGVDGTTILWDAHTGT-------VKQQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDR  350 (524)
T ss_pred             EEEEEcCCCCEEEeccCCccEEEEeccCce-------EEEeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCC
Confidence            368899999999999999999999985432       34455667777567888654  358999999999999998776


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC---------
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN---------  151 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------  151 (267)
                      +...+     .+|...|..+.|+|. +.+|++++.|++++||.... ......+++|...|..+.|+|.|.         
T Consensus       351 P~~t~-----~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~  423 (524)
T KOG0273|consen  351 PVKTF-----IGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNL  423 (524)
T ss_pred             cceee-----ecccCceEEEEECCC-CceEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCc
Confidence            66665     369999999999964 67899999999999999764 345777889999999999999764         


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCcc
Q 024451          152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE  231 (267)
Q Consensus       152 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~  231 (267)
                      .+++++.|++|++||...+.++..+..     +..+|.+++|+|+++++|+|+.||.|++|+.++++.....     ...
T Consensus       424 ~l~sas~dstV~lwdv~~gv~i~~f~k-----H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~-----~~~  493 (524)
T KOG0273|consen  424 MLASASFDSTVKLWDVESGVPIHTLMK-----HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY-----QGT  493 (524)
T ss_pred             eEEEeecCCeEEEEEccCCceeEeecc-----CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee-----cCC
Confidence            589999999999999999998877644     3347999999999999999999999999999998887654     245


Q ss_pred             ceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          232 GRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       232 ~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      +.|..++|+.+|.+|..+-.|+.+.+-++.
T Consensus       494 ~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  494 GGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            679999999999999998899999998763

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.2e-30  Score=190.52  Aligned_cols=238  Identities=21%  Similarity=0.336  Sum_probs=188.3

Q ss_pred             ceeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            2 TCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         2 ~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      .++|+|. |..|+|+|.|+.|++|+...+..    ..+...+ .+|+..|.+++|+|.+ ++|++||.|.++.||.-..+
T Consensus        19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~   93 (312)
T KOG0645|consen   19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDS----WTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDG   93 (312)
T ss_pred             EEEeccCCceEEEeecCCceEEEEecCCCCc----EEEEEeccccchheeeeeeecCCC-cEEEEeeccceEEEeecCCC
Confidence            3689998 89999999999999999874221    2233223 4899999999999976 69999999999999987655


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc--ccceEEeeccccceeEEEEecCCCEEEEee
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  157 (267)
                      .-..+-   ...||+..|.+++|+. ++++|++++.|+.|-||.+...  ......+++|...|..+.|||...+|++++
T Consensus        94 efecv~---~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S  169 (312)
T KOG0645|consen   94 EFECVA---TLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS  169 (312)
T ss_pred             ceeEEe---eeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEec
Confidence            433221   2358999999999996 5789999999999999987622  245678899999999999999999999999


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  237 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  237 (267)
                      -|.+|++|+-.....=......  .++...|.+++|++.|..|++++.|+.++||-...        .+...|.+++..+
T Consensus       170 YDnTIk~~~~~~dddW~c~~tl--~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~--------~~~~~~sr~~Y~v  239 (312)
T KOG0645|consen  170 YDNTIKVYRDEDDDDWECVQTL--DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT--------DLSGMHSRALYDV  239 (312)
T ss_pred             cCCeEEEEeecCCCCeeEEEEe--cCccceEEEEEecCCCceEEEecCCcceEeeeecc--------CcchhcccceEee
Confidence            9999999997633211111111  11223699999999999999999999999998542        2234588899999


Q ss_pred             EECCCCCeEEEeECCCcEEEEec
Q 024451          238 GLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       238 ~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      +|.  ...||+++.|+.|+||.-
T Consensus       240 ~W~--~~~IaS~ggD~~i~lf~~  260 (312)
T KOG0645|consen  240 PWD--NGVIASGGGDDAIRLFKE  260 (312)
T ss_pred             eec--ccceEeccCCCEEEEEEe
Confidence            998  458999999999999964

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-31  Score=225.11  Aligned_cols=246  Identities=18%  Similarity=0.281  Sum_probs=203.6

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      ++|+|.-.+++++--.|.|.+||+.-..       +...+.+|.++|..+.|+|+. .+++||+.|..|++|+..+....
T Consensus        15 lsFHP~rPwILtslHsG~IQlWDYRM~t-------li~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rrcl   86 (1202)
T KOG0292|consen   15 LSFHPKRPWILTSLHSGVIQLWDYRMGT-------LIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRRCL   86 (1202)
T ss_pred             eecCCCCCEEEEeecCceeeeehhhhhh-------HHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEecccceeh
Confidence            6899999999999999999999986432       667789999999999999975 58999999999999999877665


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  162 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  162 (267)
                      .++     .||-+.|.++.|++. -..+++++.|.+|+||+.. .++.+..+.||+--|.|..|+|....++++|-|.+|
T Consensus        87 ftL-----~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwq-sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV  159 (1202)
T KOG0292|consen   87 FTL-----LGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQ-SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV  159 (1202)
T ss_pred             hhh-----ccccceeEEeeccCC-CceEEEccCCCeEEEEecc-CCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence            544     589999999999864 5689999999999999986 466889999999999999999999999999999999


Q ss_pred             EEEeCCCCeee------------------------EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc
Q 024451          163 RLFDIRTGHQL------------------------QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  218 (267)
Q Consensus       163 ~iwd~~~~~~~------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~  218 (267)
                      |+||+..-+..                        ....+...+++...|..++|+|.-..+++|+.|+.|++|.+...+
T Consensus       160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence            99998642110                        001112223455678899999999999999999999999875433


Q ss_pred             eeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceEe
Q 024451          219 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR  265 (267)
Q Consensus       219 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~  265 (267)
                      . ..... -.+|...|.++-|+|..++++|.|.|++|++||+..+..
T Consensus       240 a-WEvDt-crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~  284 (1202)
T KOG0292|consen  240 A-WEVDT-CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS  284 (1202)
T ss_pred             c-eeehh-hhcccCCcceEEecCccceeEecCCCccEEEEecccccc
Confidence            2 22211 247999999999999999999999999999999876543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.5e-31  Score=205.25  Aligned_cols=207  Identities=27%  Similarity=0.486  Sum_probs=180.8

Q ss_pred             CcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC
Q 024451           36 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  115 (267)
Q Consensus        36 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~  115 (267)
                      .++.+.+.+|.+-|.|+++.|. .+++++|+.|++++|||+.+++....+     .||...+..+++++.+ .++.+++.
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~Lkltl-----tGhi~~vr~vavS~rH-pYlFs~ge  213 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTL-----TGHIETVRGVAVSKRH-PYLFSAGE  213 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEee-----cchhheeeeeeecccC-ceEEEecC
Confidence            4567889999999999999996 579999999999999999999877665     4789999999998654 47789999


Q ss_pred             CCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc
Q 024451          116 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  195 (267)
Q Consensus       116 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  195 (267)
                      |+.|+-||++. .+.++.+.+|-..|.|++.+|.-..+++|+.|.++|+||+++...+..+.     ++..+|.++.+.|
T Consensus       214 dk~VKCwDLe~-nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-----GH~~~V~~V~~~~  287 (460)
T KOG0285|consen  214 DKQVKCWDLEY-NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-----GHTNPVASVMCQP  287 (460)
T ss_pred             CCeeEEEechh-hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-----CCCCcceeEEeec
Confidence            99999999974 67899999999999999999999999999999999999999877665543     2345789999999


Q ss_pred             CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          196 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       196 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ....+++|+.|+.|++||+..++.....    ..|...|.+++.+|....+|++|.| .|+-|++
T Consensus       288 ~dpqvit~S~D~tvrlWDl~agkt~~tl----t~hkksvral~lhP~e~~fASas~d-nik~w~~  347 (460)
T KOG0285|consen  288 TDPQVITGSHDSTVRLWDLRAGKTMITL----THHKKSVRALCLHPKENLFASASPD-NIKQWKL  347 (460)
T ss_pred             CCCceEEecCCceEEEeeeccCceeEee----ecccceeeEEecCCchhhhhccCCc-cceeccC
Confidence            9999999999999999999888765443    4688999999999999999999986 6788875

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.8e-31  Score=217.56  Aligned_cols=243  Identities=22%  Similarity=0.414  Sum_probs=199.5

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC--
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT--   78 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~--   78 (267)
                      ++++|-|.++++++|...|.+.+||+....       +..+.++|.+.|++++..|++. .+++||.|++|++||..-  
T Consensus       416 l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~-------l~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~  487 (888)
T KOG0306|consen  416 LASKFVPGDRYIVLGTKNGELQVFDLASAS-------LVETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVV  487 (888)
T ss_pred             EEEEecCCCceEEEeccCCceEEEEeehhh-------hhhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEe
Confidence            367788999999999999999999987633       4556779999999999999874 689999999999998742  


Q ss_pred             ---CeeEEEe--CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE
Q 024451           79 ---GLRTSVF--GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  153 (267)
Q Consensus        79 ---~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  153 (267)
                         +.+...+  ....+..-.+.+.++.++| ++++++.+--|.+++||-+.+ -+..-.+-||.-+|.|+..+|+++.+
T Consensus       488 ~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smDIS~DSkli  565 (888)
T KOG0306|consen  488 SVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMDISPDSKLI  565 (888)
T ss_pred             ccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecc-eeeeeeecccccceeEEeccCCcCeE
Confidence               1111111  1111112356789999996 678999999999999998764 34455677999999999999999999


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccce
Q 024451          154 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR  233 (267)
Q Consensus       154 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  233 (267)
                      +|||.|+.|++|-++-|.+...++.+     ...|+++.|-|....+++++.|+.++-||....+.++.+    ..|...
T Consensus       566 vTgSADKnVKiWGLdFGDCHKS~fAH-----dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L----~~H~~e  636 (888)
T KOG0306|consen  566 VTGSADKNVKIWGLDFGDCHKSFFAH-----DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL----DGHHSE  636 (888)
T ss_pred             EeccCCCceEEeccccchhhhhhhcc-----cCceeEEEEcccceeEEEecCcceEEeechhhhhhheee----ccchhe
Confidence            99999999999999988876655442     245999999999999999999999999998887777655    578899


Q ss_pred             EEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          234 ITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       234 v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      |+|++.+|+|.+++++|+|.+|++|..+.
T Consensus       637 v~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  637 VWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             eeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            99999999999999999999999997554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.2e-30  Score=218.72  Aligned_cols=237  Identities=21%  Similarity=0.366  Sum_probs=196.5

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      ++|+|++.++++||.|-+|++|++...       .+..++.||-+.|..+.|++. -.+++|+|.|.+|||||.+++..+
T Consensus        57 v~FH~~qplFVSGGDDykIkVWnYk~r-------rclftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~i  128 (1202)
T KOG0292|consen   57 VDFHPTQPLFVSGGDDYKIKVWNYKTR-------RCLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKCI  128 (1202)
T ss_pred             eeecCCCCeEEecCCccEEEEEecccc-------eehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEeccCCceE
Confidence            689999999999999999999998753       377889999999999999985 579999999999999999999888


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc----------------------------ceEEe
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR----------------------------AVRTF  134 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~----------------------------~~~~~  134 (267)
                      .++     .||...|-|..|+|.. .++++++-|.+|||||+..-++                            ....+
T Consensus       129 avl-----tGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL  202 (1202)
T KOG0292|consen  129 AVL-----TGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL  202 (1202)
T ss_pred             EEE-----ecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence            876     4799999999999754 5789999999999999741100                            12346


Q ss_pred             eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451          135 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  214 (267)
Q Consensus       135 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~  214 (267)
                      .||...|+-++|+|.-..+++|+.|+.|++|.....+-   +....-.++...|+++-|+|..+.+++.++|+.|++||+
T Consensus       203 EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa---WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm  279 (1202)
T KOG0292|consen  203 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA---WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM  279 (1202)
T ss_pred             cccccccceEEecCCcceEEecCCcceeeEEEeccccc---eeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence            78999999999999999999999999999999864331   111111234557999999999999999999999999999


Q ss_pred             CccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          215 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      ...+.+..+.    ..+++-+.++-+|..+++|. ++|+-+.+|.+.
T Consensus       280 ~kRt~v~tfr----rendRFW~laahP~lNLfAA-gHDsGm~VFkle  321 (1202)
T KOG0292|consen  280 TKRTSVQTFR----RENDRFWILAAHPELNLFAA-GHDSGMIVFKLE  321 (1202)
T ss_pred             ccccceeeee----ccCCeEEEEEecCCcceeee-ecCCceEEEEEc
Confidence            8888776653    23567899999999999985 578888888765

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=2e-30  Score=215.01  Aligned_cols=237  Identities=23%  Similarity=0.366  Sum_probs=194.7

Q ss_pred             eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEE
Q 024451            5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV   84 (267)
Q Consensus         5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~   84 (267)
                      +.|+.++|+.++..+.+|+|++....        -..+.||+..|.++....++ -+|+|||.|+++++|.++.......
T Consensus       332 lG~e~~~laVATNs~~lr~y~~~~~~--------c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~  402 (775)
T KOG0319|consen  332 LGPEESHLAVATNSPELRLYTLPTSY--------CQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSL  402 (775)
T ss_pred             cCCccceEEEEeCCCceEEEecCCCc--------eEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhh
Confidence            46899999999999999999876532        23789999999999944444 5899999999999998854332221


Q ss_pred             eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc---c-e----EEeeccccceeEEEEecCCCEEEEe
Q 024451           85 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---A-V----RTFHGHEGDVNTVKFFPDGNRFGTG  156 (267)
Q Consensus        85 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~-~----~~~~~~~~~i~~~~~~~~~~~l~~~  156 (267)
                      . .....+|...|.+++.+.....+|++++.|+++++|++.....   + .    .....|...|++++++|+.+.+|||
T Consensus       403 ~-~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~  481 (775)
T KOG0319|consen  403 C-VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATG  481 (775)
T ss_pred             h-hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEec
Confidence            1 1233689999999999877778999999999999999875111   1 1    1234799999999999999999999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451          157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  236 (267)
Q Consensus       157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  236 (267)
                      |.|++.+||++........+     .++...+.++.|+|..+.+++++.|..|+||.+.+...+..+    .+|...|..
T Consensus       482 SqDktaKiW~le~~~l~~vL-----sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~----eGH~~aVlr  552 (775)
T KOG0319|consen  482 SQDKTAKIWDLEQLRLLGVL-----SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF----EGHTSAVLR  552 (775)
T ss_pred             ccccceeeecccCceEEEEe-----eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee----cCccceeEe
Confidence            99999999999965544443     234457999999999999999999999999999888777666    579999999


Q ss_pred             EEECCCCCeEEEeECCCcEEEEec
Q 024451          237 LGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       237 ~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      +.|-.+|+.|+||+.||.++||++
T Consensus       553 a~F~~~~~qliS~~adGliKlWni  576 (775)
T KOG0319|consen  553 ASFIRNGKQLISAGADGLIKLWNI  576 (775)
T ss_pred             eeeeeCCcEEEeccCCCcEEEEec
Confidence            999999999999999999999986

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=1.6e-29  Score=213.07  Aligned_cols=228  Identities=15%  Similarity=0.183  Sum_probs=172.5

Q ss_pred             ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+| ++++|++++.|++|++||+...............+.+|...|.+++|+|....+|++++.|++|+|||++++.
T Consensus        80 ~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~  159 (493)
T PTZ00421         80 DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK  159 (493)
T ss_pred             EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe
Confidence            678999 8899999999999999998653211111224556889999999999999866789999999999999999887


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccc-eeEEEEecCCCEEEEee--
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFPDGNRFGTGS--  157 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~--  157 (267)
                      ....+     .+|...|.+++|++ ++.++++++.|+.|++||++.. ..+..+.+|.+. ...+.|.+++..+++++  
T Consensus       160 ~~~~l-----~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s  232 (493)
T PTZ00421        160 AVEVI-----KCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRKDLIITLGCS  232 (493)
T ss_pred             EEEEE-----cCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCCCeEEEEecC
Confidence            65554     36888999999996 5678999999999999999864 456677788754 45678888877777654  


Q ss_pred             --CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecccccCCccceE
Q 024451          158 --DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRI  234 (267)
Q Consensus       158 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  234 (267)
                        .|+.|++||+++...........   ....+....|+++++++++|+ .||.|++||+..++.....   ...+..++
T Consensus       233 ~s~Dr~VklWDlr~~~~p~~~~~~d---~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~---~~~s~~~~  306 (493)
T PTZ00421        233 KSQQRQIMLWDTRKMASPYSTVDLD---QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS---SYSSVEPH  306 (493)
T ss_pred             CCCCCeEEEEeCCCCCCceeEeccC---CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe---eccCCCCC
Confidence              47999999998754332221111   122455667899999998887 4999999999877655432   12345567


Q ss_pred             EEEEECCC
Q 024451          235 TCLGLSAD  242 (267)
Q Consensus       235 ~~~~~~p~  242 (267)
                      ..++|.|.
T Consensus       307 ~g~~~~pk  314 (493)
T PTZ00421        307 KGLCMMPK  314 (493)
T ss_pred             cceEeccc
Confidence            78888874

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.98  E-value=1.2e-30  Score=205.58  Aligned_cols=251  Identities=23%  Similarity=0.314  Sum_probs=197.4

Q ss_pred             CCC-CeEEEccCCCeEEEeecCCCCCCCC---CCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            7 PTG-QSVACGGLDSVCSIFNLNSPTDKDG---NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         7 ~~g-~~l~~~~~d~~v~~w~~~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      |+. .++++++..+.+.|||+........   .......+.||...-+.+.|++.....|++++.|++|.+||+......
T Consensus       134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~  213 (422)
T KOG0264|consen  134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE  213 (422)
T ss_pred             CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC
Confidence            444 6788889999999999976432211   233445788999988999999988889999999999999999754321


Q ss_pred             --EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC-cccceEEeeccccceeEEEEec-CCCEEEEeeC
Q 024451           83 --SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-ASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSD  158 (267)
Q Consensus        83 --~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  158 (267)
                        ..-+.....+|+..|..++|++.+..+|++++.|+.+.|||+|. ..++.....+|.++++|++|+| ++..||+||.
T Consensus       214 ~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~  293 (422)
T KOG0264|consen  214 DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA  293 (422)
T ss_pred             CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC
Confidence              11112234689999999999999999999999999999999996 4556677789999999999999 5678899999


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCcccee----------eeccccc
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVV----------LNLGSLQ  227 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~----------~~~~~~~  227 (267)
                      |++|.+||+|+-+.....+    ..+...|..+.|||... .|++++.|+.+.+||+..-...          ..+...+
T Consensus       294 D~tV~LwDlRnL~~~lh~~----e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~H  369 (422)
T KOG0264|consen  294 DKTVALWDLRNLNKPLHTF----EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH  369 (422)
T ss_pred             CCcEEEeechhcccCceec----cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEe
Confidence            9999999999866533222    34456799999999865 6788889999999997542211          1222355


Q ss_pred             CCccceEEEEEECCCCCe-EEEeECCCcEEEEecC
Q 024451          228 NSHEGRITCLGLSADGSA-LCTGSWDTNLKIWAFG  261 (267)
Q Consensus       228 ~~~~~~v~~~~~~p~~~~-l~sgs~dg~i~~w~~~  261 (267)
                      .+|...|....|+|+... ++|.+.|+.+.||.+.
T Consensus       370 gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  370 GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            789999999999998775 6789999999999875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=2.8e-29  Score=201.17  Aligned_cols=244  Identities=22%  Similarity=0.388  Sum_probs=194.5

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC---CeEEEEeCCCC
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTG   79 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~   79 (267)
                      ..|+|.|-++++|...|+|||||....+     -.+...++.-.++|..++|.+++.+.++.|-..   |.+.+||.-+.
T Consensus        65 AkySPsG~yiASGD~sG~vRIWdtt~~~-----hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S  139 (603)
T KOG0318|consen   65 AKYSPSGFYIASGDVSGKVRIWDTTQKE-----HILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS  139 (603)
T ss_pred             EEeCCCceEEeecCCcCcEEEEeccCcc-----eeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCc
Confidence            4699999999999999999999976421     113334556678999999999877655555322   45778876542


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  159 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  159 (267)
                        ...+     .+|...++++.+-|.-...++|++.|+.|.+|+=. +.+....+..|..-|+++.|+|||+.|++.+.|
T Consensus       140 --vGei-----~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP-PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD  211 (603)
T KOG0318|consen  140 --VGEI-----TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP-PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD  211 (603)
T ss_pred             --ccee-----eccceeEeeeeccCCCceEEEeccCCCeEEEeeCC-CeeeeecccccccceeeEEECCCCCeEEEecCC
Confidence              3322     48999999999998777789999999999999743 334455677899999999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc---------------
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG---------------  224 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---------------  224 (267)
                      |++.+||-.+++.+..+-.  ...+.+.|.+++|+||+..+++.+.|..++|||..+.+.+..+.               
T Consensus       212 gki~iyDGktge~vg~l~~--~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq  289 (603)
T KOG0318|consen  212 GKIYIYDGKTGEKVGELED--SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ  289 (603)
T ss_pred             ccEEEEcCCCccEEEEecC--CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe
Confidence            9999999999887665532  34566789999999999999999999999999986654332110               


Q ss_pred             ------------------------cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          225 ------------------------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       225 ------------------------~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                                              ....+|...|+++..+|++++|.+||.||.|.-|+.+
T Consensus       290 kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~  350 (603)
T KOG0318|consen  290 KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG  350 (603)
T ss_pred             CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence                                    1123589999999999999999999999999999864

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=9.4e-30  Score=187.79  Aligned_cols=236  Identities=22%  Similarity=0.343  Sum_probs=181.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+.+|..|++++.|+++++|++....     .......++|.+.|-.+.|.|.....+++++.|++|++||+.++++
T Consensus        25 Sv~wn~~g~~lasgs~dktv~v~n~e~~r-----~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~   99 (313)
T KOG1407|consen   25 SVAWNCDGTKLASGSFDKTVSVWNLERDR-----FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC   99 (313)
T ss_pred             EEEEcccCceeeecccCCceEEEEecchh-----hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcE
Confidence            47899999999999999999999987531     1223356799999999999988778899999999999999998877


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC-----------------------------------
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-----------------------------------  126 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-----------------------------------  126 (267)
                      .......      ..-..+.|+|+ +.+++.++.|..|.+.|.+.                                   
T Consensus       100 ~~~i~~~------~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen  100 TARIETK------GENINITWSPD-GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             EEEeecc------CcceEEEEcCC-CCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence            6654311      11123344433 33445555555555554431                                   


Q ss_pred             -----cccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451          127 -----ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF  201 (267)
Q Consensus       127 -----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  201 (267)
                           .-+++..+++|...+.|+.|+|+|++||+|+.|-.+.+||++..-+...+...     .-+|..++||.+|++||
T Consensus       173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl-----dwpVRTlSFS~dg~~lA  247 (313)
T KOG1407|consen  173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL-----DWPVRTLSFSHDGRMLA  247 (313)
T ss_pred             EEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc-----cCceEEEEeccCcceee
Confidence                 12356678899999999999999999999999999999999865555544321     23699999999999999


Q ss_pred             EEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC---------CcEEEEe
Q 024451          202 AGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD---------TNLKIWA  259 (267)
Q Consensus       202 ~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d---------g~i~~w~  259 (267)
                      +|++|..|-|=+++++..+..+     .++++..+++|+|...+||-+..|         |++++|-
T Consensus       248 SaSEDh~IDIA~vetGd~~~eI-----~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG  309 (313)
T KOG1407|consen  248 SASEDHFIDIAEVETGDRVWEI-----PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFG  309 (313)
T ss_pred             ccCccceEEeEecccCCeEEEe-----eccCCceeEEecCCCceeeEEecCCCCccccccceeEEec
Confidence            9999999999999998887665     578899999999999999876654         5677774

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.7e-30  Score=202.59  Aligned_cols=236  Identities=24%  Similarity=0.411  Sum_probs=186.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++.|.+++++++.++.|+.+++|++...       ....++.||++.|+++.|..... .+++|+.|.+|++||+....+
T Consensus       224 ~~d~d~~~~~~iAas~d~~~r~Wnvd~~-------r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C  295 (459)
T KOG0288|consen  224 SIDFDSDNKHVIAASNDKNLRLWNVDSL-------RLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYC  295 (459)
T ss_pred             eeeecCCCceEEeecCCCceeeeeccch-------hhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhhe
Confidence            4678999999999999999999998753       26678999999999999987654 499999999999999987655


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ....-      -...++.+...   ...+++|-.|++||+||.+... .......+ +.|+++..++++..+.+++.|.+
T Consensus       296 ~kt~l------~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~-~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdt  364 (459)
T KOG0288|consen  296 SKTVL------PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSAD-KTRSVPLG-GRVTSLDLSMDGLELLSSSRDDT  364 (459)
T ss_pred             ecccc------ccccccceEec---ceeeeecccccceEEEeccCCc-eeeEeecC-cceeeEeeccCCeEEeeecCCCc
Confidence            44321      11233444443   3467899999999999988543 45555544 58999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      +++.|+++.+....+... ...-....+.+.|||++.|+++|+.||.|+||++.+++.......  ......|++++|+|
T Consensus       365 l~viDlRt~eI~~~~sA~-g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~--s~s~~aI~s~~W~~  441 (459)
T KOG0288|consen  365 LKVIDLRTKEIRQTFSAE-GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL--STSNAAITSLSWNP  441 (459)
T ss_pred             eeeeecccccEEEEeecc-ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc--CCCCcceEEEEEcC
Confidence            999999986655544322 111123478899999999999999999999999998887765432  11223799999999


Q ss_pred             CCCeEEEeECCCcEEEEe
Q 024451          242 DGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~  259 (267)
                      .|.+|++++.++.+.+|.
T Consensus       442 sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  442 SGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CCchhhcccCCcceEecC
Confidence            999999999999999993

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.9e-31  Score=219.60  Aligned_cols=236  Identities=19%  Similarity=0.274  Sum_probs=193.7

Q ss_pred             CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeC
Q 024451            7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG   86 (267)
Q Consensus         7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~   86 (267)
                      -+.++|+|++..|.|.+||+..+    ...+....+..|+..++++.|++....+|+|||.||+|++||++.......+.
T Consensus        98 ~~~NlIAT~s~nG~i~vWdlnk~----~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~  173 (839)
T KOG0269|consen   98 LYSNLIATCSTNGVISVWDLNKS----IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR  173 (839)
T ss_pred             chhhhheeecCCCcEEEEecCcc----ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc
Confidence            35688999999999999999763    22345667899999999999999888899999999999999998776555543


Q ss_pred             CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451           87 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  166 (267)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  166 (267)
                           +..+.|..|.|+|..+..|+++...|.+++||+++..+...++.+|+++|.|+.|+|++.+||+||.|++|+|||
T Consensus       174 -----~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  174 -----SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD  248 (839)
T ss_pred             -----ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence                 456789999999999999999999999999999988888888999999999999999999999999999999999


Q ss_pred             CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE---eCCeEEEEeCCccceeeecccccCCccceEEEEEECC-C
Q 024451          167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-D  242 (267)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~  242 (267)
                      ..+.+......    .+...++.+++|-|..++.++.+   .|-.|++||++....+..+.   ..|...++.++|.. |
T Consensus       249 ~t~~~~~~~~t----InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~---~eH~~~vt~i~W~~~d  321 (839)
T KOG0269|consen  249 MTDSRAKPKHT----INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF---LEHTDSVTGIAWDSGD  321 (839)
T ss_pred             ccCCCccceeE----EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee---eccCccccceeccCCC
Confidence            97654322221    22345789999999987655443   36799999998776654332   46888999999964 5


Q ss_pred             CCeEEEeECCCcEEEE
Q 024451          243 GSALCTGSWDTNLKIW  258 (267)
Q Consensus       243 ~~~l~sgs~dg~i~~w  258 (267)
                      -..|.++|.||++..-
T Consensus       322 ~~~l~s~sKD~tv~qh  337 (839)
T KOG0269|consen  322 RINLWSCSKDGTVLQH  337 (839)
T ss_pred             ceeeEeecCccHHHHh
Confidence            5678899999987543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=4.2e-31  Score=202.35  Aligned_cols=233  Identities=25%  Similarity=0.393  Sum_probs=185.2

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      +++.-+.+.|++|+.|.+|++||+....       +..++-+|...|..+.|+.   .+++++|.|.++.+||+.+...+
T Consensus       241 LCLqyd~rviisGSSDsTvrvWDv~tge-------~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i  310 (499)
T KOG0281|consen  241 LCLQYDERVIVSGSSDSTVRVWDVNTGE-------PLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI  310 (499)
T ss_pred             EeeeccceEEEecCCCceEEEEeccCCc-------hhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH
Confidence            3445567799999999999999997632       5667789999999999965   48999999999999999876422


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  162 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  162 (267)
                      ..  .....||...++.+.|+   .+++++++.|.+|++|++.+ ...++.+.+|...|-|+.+  .++++++|+.|.+|
T Consensus       311 t~--rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntI  382 (499)
T KOG0281|consen  311 TL--RRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTI  382 (499)
T ss_pred             HH--HHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccc-eeeehhhhcccccceehhc--cCeEEEecCCCceE
Confidence            11  12346899999999986   35899999999999999864 5578889999999999887  47899999999999


Q ss_pred             EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc-----cccCCccceEEEE
Q 024451          163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG-----SLQNSHEGRITCL  237 (267)
Q Consensus       163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~~v~~~  237 (267)
                      ++||+..|.++..+..+     ..-|.++.|+  ...+++|..||.|++||+.....+....     .....|.+.|..+
T Consensus       383 Rlwdi~~G~cLRvLeGH-----EeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrL  455 (499)
T KOG0281|consen  383 RLWDIECGACLRVLEGH-----EELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRL  455 (499)
T ss_pred             EEEeccccHHHHHHhch-----HHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEE
Confidence            99999999887655332     2347888884  5689999999999999986543221110     0113588999999


Q ss_pred             EECCCCCeEEEeECCCcEEEEecCc
Q 024451          238 GLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       238 ~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .|.  ...++++++|.+|.||+|..
T Consensus       456 QFD--~fqIvsssHddtILiWdFl~  478 (499)
T KOG0281|consen  456 QFD--EFQIISSSHDDTILIWDFLN  478 (499)
T ss_pred             eec--ceEEEeccCCCeEEEEEcCC
Confidence            985  57789999999999999854

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.9e-30  Score=187.56  Aligned_cols=242  Identities=25%  Similarity=0.393  Sum_probs=183.1

Q ss_pred             CceeeCC--CCCeEEEcc-------CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeE
Q 024451            1 MTCAFSP--TGQSVACGG-------LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC   71 (267)
Q Consensus         1 ~~~~~~~--~g~~l~~~~-------~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v   71 (267)
                      +++.|+|  +++ |+.+.       -.|.+.|-++..+.   + ...... ..-.+.++.|+|++..+..+++++.||++
T Consensus        12 ysvqfSPf~~nr-LavAt~q~yGl~G~G~L~ile~~~~~---g-i~e~~s-~d~~D~LfdV~Wse~~e~~~~~a~GDGSL   85 (311)
T KOG0277|consen   12 YSVQFSPFVENR-LAVATAQHYGLAGNGRLFILEVTDPK---G-IQECQS-YDTEDGLFDVAWSENHENQVIAASGDGSL   85 (311)
T ss_pred             ceeEecccccch-hheeehhhcccccCceEEEEecCCCC---C-eEEEEe-eecccceeEeeecCCCcceEEEEecCceE
Confidence            3567887  333 33322       26777787775211   1 111111 13457799999999888899999999999


Q ss_pred             EEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CC
Q 024451           72 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DG  150 (267)
Q Consensus        72 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~  150 (267)
                      +|||......    +....+-|...|.++.+++...+.+++++.|++||+|+...+ ..+..+.+|+..|....|+| ..
T Consensus        86 rl~d~~~~s~----Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~a~~sp~~~  160 (311)
T KOG0277|consen   86 RLFDLTMPSK----PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-NSVQTFNGHNSCIYQAAFSPHIP  160 (311)
T ss_pred             EEeccCCCCc----chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-cceEeecCCccEEEEEecCCCCC
Confidence            9999653321    112224589999999999988889999999999999998753 46778999999999999999 58


Q ss_pred             CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEEEeCCeEEEEeCCccceeeecccccCC
Q 024451          151 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS  229 (267)
Q Consensus       151 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~  229 (267)
                      +.|++++.|+++++||++.......+. .|.    ..+.++.|+. +...+++|+.|+.|+.||++..+.+..  .+ .+
T Consensus       161 nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~----~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~--eL-~g  232 (311)
T KOG0277|consen  161 NLFASASGDGTLRLWDVRSPGKFMSIE-AHN----SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF--EL-NG  232 (311)
T ss_pred             CeEEEccCCceEEEEEecCCCceeEEE-ecc----ceeEeecccccCCcEEEecCCCceEEEEehhhccccce--ee-cC
Confidence            899999999999999998764443332 222    3588888986 456789999999999999887654422  12 57


Q ss_pred             ccceEEEEEECCC-CCeEEEeECCCcEEEEecC
Q 024451          230 HEGRITCLGLSAD-GSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       230 ~~~~v~~~~~~p~-~~~l~sgs~dg~i~~w~~~  261 (267)
                      |+-.|..++|||. ...||++|.|-+++||++.
T Consensus       233 h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~  265 (311)
T KOG0277|consen  233 HGLAVRKVKFSPHHASLLASASYDMTVRIWDPE  265 (311)
T ss_pred             CceEEEEEecCcchhhHhhhccccceEEecccc
Confidence            9999999999996 5689999999999999875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.7e-30  Score=187.74  Aligned_cols=242  Identities=19%  Similarity=0.288  Sum_probs=187.0

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEe-cCCCeeEEEeeCCCeEEEEeCCCCeeEEEeC
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV-PDEDTHLITSSGDQTCVLWDITTGLRTSVFG   86 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~   86 (267)
                      -|+.|+|++.|++|+|+.+....    +..++..+.||.++|..++|. |.-+.+|++++.||.|.||.-+++.-.... 
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~----~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~-   96 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNG----QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY-   96 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCC----CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh-
Confidence            47899999999999999987533    234677899999999999995 555679999999999999998877322221 


Q ss_pred             CccccCCccceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcc--cceEEeeccccceeEEEEecC---C----------
Q 024451           87 GEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPD---G----------  150 (267)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~---~----------  150 (267)
                        ....|+..+++++|.|. .+-+|+.++.||.|.|.+.+...  ...+....|.-.|+++.|.|.   |          
T Consensus        97 --e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~  174 (299)
T KOG1332|consen   97 --EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAK  174 (299)
T ss_pred             --hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccc
Confidence              22469999999999864 35578889999999999876541  123456789999999999986   4          


Q ss_pred             -CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC----CEEEEEEeCCeEEEEeCCccceeeeccc
Q 024451          151 -NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG----RLLFAGYSNGDCYVWDTLLAKVVLNLGS  225 (267)
Q Consensus       151 -~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~g~~dg~i~i~d~~~~~~~~~~~~  225 (267)
                       +.|++|+.|..|+||+..+++-..   ......+...|..++|.|.-    .+|++++.||.+.||.........+ ..
T Consensus       175 ~krlvSgGcDn~VkiW~~~~~~w~~---e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk-~t  250 (299)
T KOG1332|consen  175 VKRLVSGGCDNLVKIWKFDSDSWKL---ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK-KT  250 (299)
T ss_pred             cceeeccCCccceeeeecCCcchhh---hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc-cc
Confidence             469999999999999998753211   11123455689999999974    4899999999999998652211111 11


Q ss_pred             ccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          226 LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       226 ~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      +.......+..+.||+.|++|+.++.|..+++|.-
T Consensus       251 ll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  251 LLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             ccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            22346678999999999999999999999999964

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.9e-29  Score=206.60  Aligned_cols=235  Identities=25%  Similarity=0.428  Sum_probs=196.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccC-CeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      ++.|+++|++|+.|..+|.|.|||.....       ..+.+.+ |...|.+++|..   ..+.+|+.|+.|..+|++...
T Consensus       222 Sv~ws~~G~~LavG~~~g~v~iwD~~~~k-------~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~  291 (484)
T KOG0305|consen  222 SVKWSPDGSHLAVGTSDGTVQIWDVKEQK-------KTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQ  291 (484)
T ss_pred             EEEECCCCCEEEEeecCCeEEEEehhhcc-------ccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecch
Confidence            56799999999999999999999987532       4556667 999999999973   468899999999999998764


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEee--
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGS--  157 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--  157 (267)
                      ....    ...+|...|.-+.|++ +++++++|+.|+.+.|||.. ...+...+..|...|..++|+| ....||+|+  
T Consensus       292 ~~~~----~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~-~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs  365 (484)
T KOG0305|consen  292 HVVS----TLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGL-SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS  365 (484)
T ss_pred             hhhh----hhhcccceeeeeEECC-CCCeeccCCCccceEeccCC-CccccEEEeccceeeeEeeeCCCccCceEEcCCC
Confidence            3322    2467999999999996 56789999999999999985 3456777889999999999999 567888875  


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE--EEeCCeEEEEeCCccceeeecccccCCccceEE
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  235 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  235 (267)
                      .|++|++||+.++..+....      ....|.++.|++..+-|++  |..++.|.||+..+.+.+..+    .+|..+|.
T Consensus       366 ~D~~i~fwn~~~g~~i~~vd------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l----~gH~~RVl  435 (484)
T KOG0305|consen  366 ADRCIKFWNTNTGARIDSVD------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL----LGHTSRVL  435 (484)
T ss_pred             cccEEEEEEcCCCcEecccc------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee----cCCcceeE
Confidence            79999999999988765432      2246999999999865555  567889999998876665554    57999999


Q ss_pred             EEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          236 CLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       236 ~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .++++|||..+++|+.|.++++|.+.+
T Consensus       436 ~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  436 YLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             EEEECCCCCEEEEecccCcEEeccccC
Confidence            999999999999999999999998765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=6.7e-30  Score=219.93  Aligned_cols=257  Identities=23%  Similarity=0.363  Sum_probs=197.0

Q ss_pred             ceeeCCCCCeEEEcc--CCCeEEEeecCCCC----CCCC-CCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEE
Q 024451            2 TCAFSPTGQSVACGG--LDSVCSIFNLNSPT----DKDG-NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW   74 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~--~d~~v~~w~~~~~~----~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iw   74 (267)
                      ++..+|+|..++|||  .|+.+++|+.+.-.    +... .-+....+..|.+.|.|++|+|++ .+||+||.|+.|.||
T Consensus        18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW   96 (942)
T KOG0973|consen   18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIW   96 (942)
T ss_pred             EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEe
Confidence            577899999999999  99999999976421    0111 123455678899999999999976 699999999999999


Q ss_pred             eCCCCeeEEEeC-------------CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccce
Q 024451           75 DITTGLRTSVFG-------------GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV  141 (267)
Q Consensus        75 d~~~~~~~~~~~-------------~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i  141 (267)
                      +.........+.             .....+|..+|..++|+| ++.++++++.|++|.+|+.+.. ..++.+.+|.+.|
T Consensus        97 ~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~V  174 (942)
T KOG0973|consen   97 ERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLV  174 (942)
T ss_pred             eecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccc-eeeeeeecccccc
Confidence            987310000110             011257999999999997 6789999999999999998865 6788999999999


Q ss_pred             eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC-CCCCCcEEEEEEccCCCEEEEEEe----CCeEEEEeCCc
Q 024451          142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-ENEIPHVTSIAFSISGRLLFAGYS----NGDCYVWDTLL  216 (267)
Q Consensus       142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~~~  216 (267)
                      -.+.|.|-|+|||+-+.|++|+||++.+-.....+.+... .........+.|||||.+|++..+    ...+.|.+..+
T Consensus       175 KGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t  254 (942)
T KOG0973|consen  175 KGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT  254 (942)
T ss_pred             cceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC
Confidence            9999999999999999999999999776444443333222 122345789999999999999743    23677777655


Q ss_pred             cceeeecccccCCccceEEEEEECCC-----CC------------eEEEeECCCcEEEEecCceEec
Q 024451          217 AKVVLNLGSLQNSHEGRITCLGLSAD-----GS------------ALCTGSWDTNLKIWAFGGYRRV  266 (267)
Q Consensus       217 ~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~------------~l~sgs~dg~i~~w~~~~~~~~  266 (267)
                      .+.-..+    .+|.++++++.|+|-     .+            .+|+||.|++|.||.. ++.|+
T Consensus       255 Wk~~~~L----vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T-~~~RP  316 (942)
T KOG0973|consen  255 WKVDKDL----VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT-ALPRP  316 (942)
T ss_pred             ceeeeee----ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec-CCCCc
Confidence            5544333    579999999999982     12            6899999999999985 55554

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.6e-28  Score=183.94  Aligned_cols=241  Identities=22%  Similarity=0.316  Sum_probs=187.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC--CCeEEEEeCCCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG--DQTCVLWDITTG   79 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--d~~v~iwd~~~~   79 (267)
                      ++.|+++|.+|++++.|.++++||.....       ..+++..++..+..+.|...... ++.++.  |.+||.-++.+.
T Consensus        19 sl~fs~~G~~litss~dDsl~LYd~~~g~-------~~~ti~skkyG~~~~~Fth~~~~-~i~sStk~d~tIryLsl~dN   90 (311)
T KOG1446|consen   19 SLDFSDDGLLLITSSEDDSLRLYDSLSGK-------QVKTINSKKYGVDLACFTHHSNT-VIHSSTKEDDTIRYLSLHDN   90 (311)
T ss_pred             EEEecCCCCEEEEecCCCeEEEEEcCCCc-------eeeEeecccccccEEEEecCCce-EEEccCCCCCceEEEEeecC
Confidence            57899999999999999999999987632       45667777778888888765443 455554  899999999988


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  159 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  159 (267)
                      +.+..|     .||...|++++.+|.+ ..+++++.|++|++||++... ....+.  ...-..++|.|.|-++|++...
T Consensus        91 kylRYF-----~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~-cqg~l~--~~~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   91 KYLRYF-----PGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKK-CQGLLN--LSGRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             ceEEEc-----CCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCC-CceEEe--cCCCcceeECCCCcEEEEecCC
Confidence            877777     4899999999999876 578999999999999998533 333332  2334568999999999999988


Q ss_pred             CcEEEEeCCCCe--eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451          160 GTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  237 (267)
Q Consensus       160 ~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  237 (267)
                      +.|++||++.-.  ....+.-  ..+.......+.|||+|++|+.+...+.+++.|...+.....+...+....-+ ...
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i--~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~-~~a  238 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSI--TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP-LSA  238 (311)
T ss_pred             CeEEEEEecccCCCCceeEcc--CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc-eeE
Confidence            899999998642  1222211  12334568999999999999999999999999998887665554433333333 567


Q ss_pred             EECCCCCeEEEeECCCcEEEEecCc
Q 024451          238 GLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       238 ~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +|+||++++++|+.||+|.+|.+..
T Consensus       239 ~ftPds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  239 TFTPDSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             EECCCCcEEEEecCCCcEEEEEcCC
Confidence            8999999999999999999998743

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=2.4e-29  Score=201.30  Aligned_cols=257  Identities=22%  Similarity=0.273  Sum_probs=189.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      ++++.|.|-.+++||.|.+|+.||+..-+   ..++..+.+ ...+..|.+++|++.+++ |+..+.....+++|-.--.
T Consensus       172 al~~Dp~GaR~~sGs~Dy~v~~wDf~gMd---as~~~fr~l~P~E~h~i~sl~ys~Tg~~-iLvvsg~aqakl~DRdG~~  247 (641)
T KOG0772|consen  172 ALAVDPSGARFVSGSLDYTVKFWDFQGMD---ASMRSFRQLQPCETHQINSLQYSVTGDQ-ILVVSGSAQAKLLDRDGFE  247 (641)
T ss_pred             EeeecCCCceeeeccccceEEEEeccccc---ccchhhhccCcccccccceeeecCCCCe-EEEEecCcceeEEccCCce
Confidence            57889999999999999999999987522   222233333 334567899999998875 4555566678889876433


Q ss_pred             eEEEeCC-------ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-----ccccceeEEEEec
Q 024451           81 RTSVFGG-------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-----GHEGDVNTVKFFP  148 (267)
Q Consensus        81 ~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~i~~~~~~~  148 (267)
                      ......+       ..+.||...+++.+|+|.+...|+|++.||++|+||+....+....++     +..-++.+++|+|
T Consensus       248 ~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr  327 (641)
T KOG0772|consen  248 IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR  327 (641)
T ss_pred             eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC
Confidence            2222222       235689999999999999999999999999999999976544333332     3344678999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCeeeE--EEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec-cc
Q 024451          149 DGNRFGTGSDDGTCRLFDIRTGHQLQ--VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL-GS  225 (267)
Q Consensus       149 ~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~  225 (267)
                      +++.+|+|+.||.|.+|+..+.....  .+...|.  ....|++++||++|++|++-+.|+.+++||++..+..... ..
T Consensus       328 dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~--~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg  405 (641)
T KOG0772|consen  328 DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL--PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG  405 (641)
T ss_pred             CcchhhhcccCCceeeeecCCcccccceEeeeccC--CCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC
Confidence            99999999999999999975533222  2223332  2347999999999999999999999999999876654332 22


Q ss_pred             ccCCccceEEEEEECCCCCeEEEeEC------CCcEEEEecCceEec
Q 024451          226 LQNSHEGRITCLGLSADGSALCTGSW------DTNLKIWAFGGYRRV  266 (267)
Q Consensus       226 ~~~~~~~~v~~~~~~p~~~~l~sgs~------dg~i~~w~~~~~~~~  266 (267)
                      ++..  .+-+.++|||+.+++++|+.      .|.+.+|+-..|.++
T Consensus       406 L~t~--~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v  450 (641)
T KOG0772|consen  406 LPTP--FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV  450 (641)
T ss_pred             CCcc--CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence            2222  24477899999999999875      567888887666543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.1e-27  Score=173.93  Aligned_cols=254  Identities=22%  Similarity=0.352  Sum_probs=190.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCC------CCCCCCc--ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEE
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPT------DKDGNLP--VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL   73 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~------~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~i   73 (267)
                      +.+|+|.|.+.+.|+..+++++-.+..-.      +...+-|  +....+-|++.|+|++|+|.+ +++++|+.|++|++
T Consensus        37 av~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~  115 (350)
T KOG0641|consen   37 AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKV  115 (350)
T ss_pred             eEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc-CeEEecCCCceEEE
Confidence            46899999999999999999987654211      0011111  223456799999999999976 58999999999998


Q ss_pred             EeCCCCeeEEEeCCccccCCccceEEEEEeC---CCCeEEEEec-CCCeEEEEeCCCcccceEEeeccccceeEEEEecC
Q 024451           74 WDITTGLRTSVFGGEFQSGHTADVLSVSISG---SNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD  149 (267)
Q Consensus        74 wd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  149 (267)
                      ...+......+-..-..+-|.+.|..++|..   ..+.++++++ .|..|.+-|... ......+.+|.+-|.++- +-+
T Consensus       116 l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~-g~~~~a~sghtghilaly-swn  193 (350)
T KOG0641|consen  116 LPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR-GQGFHALSGHTGHILALY-SWN  193 (350)
T ss_pred             EecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC-CCcceeecCCcccEEEEE-Eec
Confidence            8665432211110011245889999999863   3456677655 466677777654 345677889998887653 446


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCeeeEEEEeec--CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc
Q 024451          150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  227 (267)
Q Consensus       150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~  227 (267)
                      +-.|++|++|.+||+||++-..++..+-...  ...+...|.+++..|.|+.|++|-.|....+||++.++++..+    
T Consensus       194 ~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f----  269 (350)
T KOG0641|consen  194 GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF----  269 (350)
T ss_pred             CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee----
Confidence            8899999999999999999776655432211  1223457899999999999999999999999999999988766    


Q ss_pred             CCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          228 NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       228 ~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ..|...|.|+.|+|...||++||.|..|++=|+-|
T Consensus       270 ~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  270 HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             CCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            46999999999999999999999999999998754

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.5e-28  Score=189.95  Aligned_cols=236  Identities=22%  Similarity=0.329  Sum_probs=180.8

Q ss_pred             CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-----EE-
Q 024451           10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-----TS-   83 (267)
Q Consensus        10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----~~-   83 (267)
                      ..++++|.|.++++|..+.+...   ......-+||+..|-+|+..+++ ..+++||.|.+|+||+.++...     .. 
T Consensus       160 ~~fvsas~Dqtl~Lw~~~~~~~~---~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~  235 (423)
T KOG0313|consen  160 CLFVSASMDQTLRLWKWNVGENK---VKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSN  235 (423)
T ss_pred             ceEEEecCCceEEEEEecCchhh---hhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccch
Confidence            46999999999999998764422   22333335999999999999876 4789999999999999432110     00 


Q ss_pred             ----------E----eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC
Q 024451           84 ----------V----FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD  149 (267)
Q Consensus        84 ----------~----~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  149 (267)
                                .    .+.....+|...|.++.|++  ...+.+++.|-+|+.||+..+. ....+.+ +..+++++++|.
T Consensus       236 ~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~-~~~~~~~-~ksl~~i~~~~~  311 (423)
T KOG0313|consen  236 RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGG-LKSTLTT-NKSLNCISYSPL  311 (423)
T ss_pred             hhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeeccc-ceeeeec-CcceeEeecccc
Confidence                      0    00112358999999999986  3467899999999999998654 3333432 467899999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccc-eeeeccccc
Q 024451          150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAK-VVLNLGSLQ  227 (267)
Q Consensus       150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~-~~~~~~~~~  227 (267)
                      .+++++|+.|..+++||.+++.-.....  ...++...|.++.|+|... .|++|+.|+.+++||++..+ .+..+    
T Consensus       312 ~~Ll~~gssdr~irl~DPR~~~gs~v~~--s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI----  385 (423)
T KOG0313|consen  312 SKLLASGSSDRHIRLWDPRTGDGSVVSQ--SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI----  385 (423)
T ss_pred             cceeeecCCCCceeecCCCCCCCceeEE--eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee----
Confidence            9999999999999999999875332221  1234455899999999876 46778999999999998877 33333    


Q ss_pred             CCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          228 NSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       228 ~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ..|.+.|.++.|+ ++.++++|+.|..|+|+..
T Consensus       386 ~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  386 AGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             ccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence            4699999999998 5789999999999999964

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=8.6e-29  Score=198.11  Aligned_cols=250  Identities=18%  Similarity=0.288  Sum_probs=190.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCC-----CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDK-----DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~   76 (267)
                      ++.|++.|.+|++.+-..+.+++|.....-.     +.-..-+...+||...++|..|+|...+.+++++.|+++||||+
T Consensus       219 sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv  298 (641)
T KOG0772|consen  219 SLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDV  298 (641)
T ss_pred             eeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEec
Confidence            4689999999999999999999997653210     00011123457999999999999999889999999999999999


Q ss_pred             CCC-eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc--cceEEeecccc--ceeEEEEecCCC
Q 024451           77 TTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEG--DVNTVKFFPDGN  151 (267)
Q Consensus        77 ~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~--~i~~~~~~~~~~  151 (267)
                      +.. .+..++......+..-.+.++.|++ ++..+++|+.||.|.+|+.....  .....-++|..  .|+|+.|+++|+
T Consensus       299 ~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~  377 (641)
T KOG0772|consen  299 NNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN  377 (641)
T ss_pred             CCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence            753 3344444344445666788888986 56679999999999999965322  12334457876  899999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe------CCeEEEEeCCccceeeeccc
Q 024451          152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTLLAKVVLNLGS  225 (267)
Q Consensus       152 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~  225 (267)
                      +|++-+.|+++++||++.-+.....+.  +.....+-+.++|||+.++|++|.+      .|.+.+||..+...+..+..
T Consensus       378 ~LlSRg~D~tLKvWDLrq~kkpL~~~t--gL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i  455 (641)
T KOG0772|consen  378 YLLSRGFDDTLKVWDLRQFKKPLNVRT--GLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI  455 (641)
T ss_pred             hhhhccCCCceeeeeccccccchhhhc--CCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence            999999999999999997654332221  1122234578899999999999864      57899999888777766532


Q ss_pred             ccCCccceEEEEEECCCCCeEEEeECCCcEEEE
Q 024451          226 LQNSHEGRITCLGLSADGSALCTGSWDTNLKIW  258 (267)
Q Consensus       226 ~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w  258 (267)
                          -...|..+.|+|-=+.+..|+.||++++|
T Consensus       456 ----~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  456 ----STASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             ----CCceEEEEeecchhhheeeecCCCceEEE
Confidence                25568889999988888889999999998

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=2.6e-27  Score=201.05  Aligned_cols=228  Identities=17%  Similarity=0.250  Sum_probs=165.2

Q ss_pred             ceeeCCC-CCeEEEccCCCeEEEeecCCCCCC-CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            2 TCAFSPT-GQSVACGGLDSVCSIFNLNSPTDK-DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         2 ~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      +++|+|+ +.+|++|+.|++|++||+...... .........+.+|...|.+++|+|++..++++++.|++|++||+.++
T Consensus        79 ~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg  158 (568)
T PTZ00420         79 DLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE  158 (568)
T ss_pred             EEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence            6889997 799999999999999998643211 00011234578999999999999987666789999999999999988


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeE-----EEEecCCCEEE
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT-----VKFFPDGNRFG  154 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~l~  154 (267)
                      .....+      .|...|.+++|++ ++.++++++.|+.|+|||++.. ..+..+.+|.+.+.+     ..|++++++++
T Consensus       159 ~~~~~i------~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg-~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il  230 (568)
T PTZ00420        159 KRAFQI------NMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQ-EIASSFHIHDGGKNTKNIWIDGLGGDDNYIL  230 (568)
T ss_pred             cEEEEE------ecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCC-cEEEEEecccCCceeEEEEeeeEcCCCCEEE
Confidence            655443      1446799999996 4668888999999999999864 456778889876543     33458889999


Q ss_pred             EeeCCC----cEEEEeCCCC-eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCC
Q 024451          155 TGSDDG----TCRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS  229 (267)
Q Consensus       155 ~~~~d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~  229 (267)
                      +++.|+    +|+|||++.. +.+... ..  ......+......+++.++++|..|+.|++|++.... +..+..  ..
T Consensus       231 TtG~d~~~~R~VkLWDlr~~~~pl~~~-~l--d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~--~~  304 (568)
T PTZ00420        231 STGFSKNNMREMKLWDLKNTTSALVTM-SI--DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNE--YK  304 (568)
T ss_pred             EEEcCCCCccEEEEEECCCCCCceEEE-Ee--cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecc--cc
Confidence            988764    7999999853 333222 11  1112233344445668899999999999999986653 222222  23


Q ss_pred             ccceEEEEEECCCC
Q 024451          230 HEGRITCLGLSADG  243 (267)
Q Consensus       230 ~~~~v~~~~~~p~~  243 (267)
                      +..++.+++|.|..
T Consensus       305 s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        305 SCSPFRSFGFLPKQ  318 (568)
T ss_pred             cCCCccceEEcccc
Confidence            56788899999964

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5e-28  Score=191.10  Aligned_cols=246  Identities=22%  Similarity=0.343  Sum_probs=191.3

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCC-----------CcccccccCCeeeEEEEEEecCCCeeEEEeeCCC
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN-----------LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ   69 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~   69 (267)
                      ++++++|++++..+++.|++|.-|++.........           .|....-++|...+.+++.++++ .+|++|+.|.
T Consensus       146 ~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg-kylatgg~d~  224 (479)
T KOG0299|consen  146 TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG-KYLATGGRDR  224 (479)
T ss_pred             eEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC-cEEEecCCCc
Confidence            36789999999999999999999997653211011           11111114899999999999975 6999999999


Q ss_pred             eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC
Q 024451           70 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD  149 (267)
Q Consensus        70 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  149 (267)
                      .|.||+.++...+..+     .+|.+.|.+++|-... ..+.+++.|+.+++|++... ..+..+.+|.+.|..+....-
T Consensus       225 ~v~Iw~~~t~ehv~~~-----~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~~IdaL~r  297 (479)
T KOG0299|consen  225 HVQIWDCDTLEHVKVF-----KGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQL-SYVETLYGHQDGVLGIDALSR  297 (479)
T ss_pred             eEEEecCcccchhhcc-----cccccceeeeeeecCc-cceeeeecCCceEEEehhHh-HHHHHHhCCccceeeechhcc
Confidence            9999999998776664     4799999999998544 45679999999999998753 346677899999999998877


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc--
Q 024451          150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--  227 (267)
Q Consensus       150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~--  227 (267)
                      ++.+.+|+.|+++++|++....  +.++..+    ...+-+++|- +...+++|+.+|.|.+|++...+++......+  
T Consensus       298 eR~vtVGgrDrT~rlwKi~ees--qlifrg~----~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv  370 (479)
T KOG0299|consen  298 ERCVTVGGRDRTVRLWKIPEES--QLIFRGG----EGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV  370 (479)
T ss_pred             cceEEeccccceeEEEeccccc--eeeeeCC----CCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccc
Confidence            8888888899999999995433  2333222    2357788875 55789999999999999988777665432211  


Q ss_pred             ------CCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          228 ------NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       228 ------~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                            ..+...|++++..|...++|+||.+|.||+|.+.
T Consensus       371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             cCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence                  1233489999999999999999999999999863

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=3.2e-28  Score=182.91  Aligned_cols=206  Identities=27%  Similarity=0.474  Sum_probs=170.5

Q ss_pred             cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451           39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  118 (267)
Q Consensus        39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~  118 (267)
                      ...+.+|++.|+.+.|+|++ ..++||+.|..|.+|++........    ...+|++.|..+.+.. ++..+++++.|.+
T Consensus        40 ~m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN~~----~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCENFW----VLKGHSGAVMELHGMR-DGSHILSCGTDKT  113 (338)
T ss_pred             hhhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEecccccccee----eeccccceeEeeeecc-CCCEEEEecCCce
Confidence            44578999999999999954 6999999999999999754332211    1258999999999996 5667899999999


Q ss_pred             EEEEeCCCcccceEEeeccccceeEEEEecCCC-EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC
Q 024451          119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  197 (267)
Q Consensus       119 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  197 (267)
                      ++.||.+++ +.++.+++|..-++.+.-..-|. ++.+++.|+++++||+++...++.+      .....++++.|..++
T Consensus       114 v~~wD~~tG-~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~------~~kyqltAv~f~d~s  186 (338)
T KOG0265|consen  114 VRGWDAETG-KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF------ENKYQLTAVGFKDTS  186 (338)
T ss_pred             EEEEecccc-eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc------ccceeEEEEEecccc
Confidence            999999864 56888899999999888544454 4567889999999999976554432      123468999999999


Q ss_pred             CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          198 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       198 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      ..+.+|.-|+.|++||++.+.....+    .+|.++|+.+..+|+|.++.+-+.|.++++|++.
T Consensus       187 ~qv~sggIdn~ikvWd~r~~d~~~~l----sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~r  246 (338)
T KOG0265|consen  187 DQVISGGIDNDIKVWDLRKNDGLYTL----SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVR  246 (338)
T ss_pred             cceeeccccCceeeeccccCcceEEe----ecccCceeeEEeccCCCccccccccceEEEEEec
Confidence            99999999999999999887766554    6899999999999999999999999999999973

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.9e-27  Score=178.00  Aligned_cols=246  Identities=18%  Similarity=0.241  Sum_probs=181.5

Q ss_pred             ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+| ...+++.+++|++||+|+++...    .. ..+....|.++|.++.|+.++ ..+++|+.|+.+++||+.+++
T Consensus        32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g----~~-~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSG----QL-VPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             eeEeccccCceEEecccCCceEEEEEecCC----cc-cchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCCC
Confidence            578999 56777799999999999997631    11 225567899999999999876 679999999999999999985


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  159 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  159 (267)
                      ...+      ..|...|.++.|.+.. ...++||+.|++||+||.+... ++..+.- ...++++..-  ...++.+..+
T Consensus       106 ~~~v------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~L-PeRvYa~Dv~--~pm~vVata~  175 (347)
T KOG0647|consen  106 VSQV------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATLQL-PERVYAADVL--YPMAVVATAE  175 (347)
T ss_pred             eeee------eecccceeEEEEecCCCcceeEecccccceeecccCCCC-eeeeeec-cceeeehhcc--CceeEEEecC
Confidence            4433      3599999999888543 3578999999999999998543 4554442 3567776653  3478888999


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec----ccccC---Cccc
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL----GSLQN---SHEG  232 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~----~~~~~---~~~~  232 (267)
                      +.|.+|+++.+....   +.......-.+.+++..++....+.|+-+|.+.+..+..+....++    .+...   ..--
T Consensus       176 r~i~vynL~n~~te~---k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY  252 (347)
T KOG0647|consen  176 RHIAVYNLENPPTEF---KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY  252 (347)
T ss_pred             CcEEEEEcCCCcchh---hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence            999999997654321   1111112235788888888888899999999988876543211111    11000   0123


Q ss_pred             eEEEEEECCCCCeEEEeECCCcEEEEecCceEec
Q 024451          233 RITCLGLSADGSALCTGSWDTNLKIWAFGGYRRV  266 (267)
Q Consensus       233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~~  266 (267)
                      .|++++|+|.-..|++++.||+..+||-..++||
T Consensus       253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL  286 (347)
T KOG0647|consen  253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL  286 (347)
T ss_pred             EecceEeecccceEEEecCCceEEEecchhhhhh
Confidence            6889999999999999999999999998887776

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-27  Score=174.22  Aligned_cols=203  Identities=26%  Similarity=0.417  Sum_probs=168.2

Q ss_pred             ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451           38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  117 (267)
Q Consensus        38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~  117 (267)
                      ..+++..|.++|.+++|+-++ +|.++++.|++||+||...+..+.++.     +|...|..++.+..+ ..|++++.|.
T Consensus         9 r~~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~liktYs-----ghG~EVlD~~~s~Dn-skf~s~GgDk   81 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGALIKTYS-----GHGHEVLDAALSSDN-SKFASCGGDK   81 (307)
T ss_pred             hceeecccccceEEEEEccCC-CEEEEcCCCceEEeecccccceeeeec-----CCCceeeeccccccc-cccccCCCCc
Confidence            455778999999999999875 699999999999999999988888774     687888888877544 4689999999


Q ss_pred             eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC
Q 024451          118 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  197 (267)
Q Consensus       118 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  197 (267)
                      .+.+||+.+ .+..+.+.+|.+.|+.+.|..+...+++|+.|.++++||.++........-   ......|.++..  .+
T Consensus        82 ~v~vwDV~T-Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil---dea~D~V~Si~v--~~  155 (307)
T KOG0316|consen   82 AVQVWDVNT-GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL---DEAKDGVSSIDV--AE  155 (307)
T ss_pred             eEEEEEccc-CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh---hhhcCceeEEEe--cc
Confidence            999999985 567899999999999999999999999999999999999987643221110   111235777765  45


Q ss_pred             CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          198 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       198 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      .-|++|+.||.++.||++.+.....      ....+|+|++|+|++++.+.++.|+++++-|
T Consensus       156 heIvaGS~DGtvRtydiR~G~l~sD------y~g~pit~vs~s~d~nc~La~~l~stlrLlD  211 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKGTLSSD------YFGHPITSVSFSKDGNCSLASSLDSTLRLLD  211 (307)
T ss_pred             cEEEeeccCCcEEEEEeecceeehh------hcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence            6899999999999999987765432      3456899999999999999999999999986

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=3e-27  Score=199.94  Aligned_cols=224  Identities=29%  Similarity=0.409  Sum_probs=185.5

Q ss_pred             CCeEEEccCCCeEEEeecCCCCCCCCCCccccc-ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451            9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG   87 (267)
Q Consensus         9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   87 (267)
                      +..+++++.|+++++|+....       ...+. +.||.+.|+++++.. ++.++++|+.|.++++||..++....++. 
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~-------~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-  288 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNG-------YLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQ-  288 (537)
T ss_pred             cCeEEecCCCceeEEeecccc-------eEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEec-
Confidence            567999999999999997642       23444 899999999999965 56789999999999999999999988874 


Q ss_pred             ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeC
Q 024451           88 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  167 (267)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  167 (267)
                          +|...+.++...+   ..+++|+.|.+|++|++.. ...+..+.+|.+.|.++..+  +.++++|+.|++|++||.
T Consensus       289 ----gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n-~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~  358 (537)
T KOG0274|consen  289 ----GHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTN-GACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP  358 (537)
T ss_pred             ----CCCceEEEEEccC---ceEeeccCCceEEEEeccC-cceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEh
Confidence                7999998887753   4677889999999999974 45677777899999999987  789999999999999999


Q ss_pred             CCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc-ceeeecccccCCccceEEEEEECCCCCeE
Q 024451          168 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSAL  246 (267)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  246 (267)
                      .+++++..+..     +...|.++.+.+. ..+++|+.|+.|++||+.+. +.+..+    ..|.+.+..+.  ..+++|
T Consensus       359 ~~~~cl~sl~g-----H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl----~~h~~~v~~l~--~~~~~L  426 (537)
T KOG0274|consen  359 RTGKCLKSLSG-----HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL----QGHTSLVSSLL--LRDNFL  426 (537)
T ss_pred             hhceeeeeecC-----CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh----cCCcccccccc--ccccee
Confidence            99888766543     3457899887765 89999999999999999887 554433    46777775554  457899


Q ss_pred             EEeECCCcEEEEecCce
Q 024451          247 CTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       247 ~sgs~dg~i~~w~~~~~  263 (267)
                      ++++.|++|++||....
T Consensus       427 vs~~aD~~Ik~WD~~~~  443 (537)
T KOG0274|consen  427 VSSSADGTIKLWDAEEG  443 (537)
T ss_pred             EeccccccEEEeecccC
Confidence            99999999999987443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=4.7e-27  Score=184.57  Aligned_cols=231  Identities=22%  Similarity=0.385  Sum_probs=184.3

Q ss_pred             CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451            6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF   85 (267)
Q Consensus         6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~   85 (267)
                      .|....++|||.|.++.++|...+.       ...+++||+-.|..+.++|+.. .+++++.|..|++|.........  
T Consensus       228 ~~s~~~ilTGG~d~~av~~d~~s~q-------~l~~~~Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s~~~--  297 (506)
T KOG0289|consen  228 IPSSSKILTGGEDKTAVLFDKPSNQ-------ILATLKGHTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSSEPT--  297 (506)
T ss_pred             cCCCCcceecCCCCceEEEecchhh-------hhhhccCcceEEEEEEeccchh-heeecCCcceEEeeccccccCcc--
Confidence            3445789999999999999976532       6778999999999999999764 68999999999999987554222  


Q ss_pred             CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec--cccceeEEEEecCCCEEEEeeCCCcEE
Q 024451           86 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCR  163 (267)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~  163 (267)
                         ....|+..|..+..++ ++.+|++++.|+...+.|.+.... +.....  ..-.+++++|||||..|++|..|+.++
T Consensus       298 ---~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~-lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vk  372 (506)
T KOG0289|consen  298 ---SSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQ-LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVK  372 (506)
T ss_pred             ---ccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcE-EEEEeeccccceeEEeeEcCCceEEeccCCCceEE
Confidence               2246999999999886 567899999999999999886543 332322  223478999999999999999999999


Q ss_pred             EEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC
Q 024451          164 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  243 (267)
Q Consensus       164 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  243 (267)
                      |||++++.....|.     .+.++|..++|+-+|-+|+++..|+.|++||++..+....+.   -....++.++.|.+.|
T Consensus       373 iwdlks~~~~a~Fp-----ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~---l~~~~~v~s~~fD~SG  444 (506)
T KOG0289|consen  373 IWDLKSQTNVAKFP-----GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ---LDEKKEVNSLSFDQSG  444 (506)
T ss_pred             EEEcCCccccccCC-----CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee---ccccccceeEEEcCCC
Confidence            99999877554442     355689999999999999999999999999998776544332   2233479999999999


Q ss_pred             CeEEEeECCCcEEEEe
Q 024451          244 SALCTGSWDTNLKIWA  259 (267)
Q Consensus       244 ~~l~sgs~dg~i~~w~  259 (267)
                      .+|+.++.|=.|.+++
T Consensus       445 t~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  445 TYLGIAGSDLQVYICK  460 (506)
T ss_pred             CeEEeecceeEEEEEe
Confidence            9999997765555554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=5.5e-27  Score=184.17  Aligned_cols=237  Identities=23%  Similarity=0.371  Sum_probs=192.0

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      ..|+|+...+++++.|..+++|......       .......|..+|+.+..+|.+ .|+++++.|++..+.|++++...
T Consensus       267 v~~~~~~~~v~~aSad~~i~vws~~~~s-------~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~l  338 (506)
T KOG0289|consen  267 VKFHKDLDTVITASADEIIRVWSVPLSS-------EPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQL  338 (506)
T ss_pred             EEeccchhheeecCCcceEEeecccccc-------CccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEE
Confidence            4689999999999999999999987643       223456899999999999976 59999999999999999998766


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  162 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  162 (267)
                      ......   ...-.+.+..|+| ++.+|.+|..|+.++|||++.+. ....+.+|.++|..+.|+.+|-+++++++|+.|
T Consensus       339 t~vs~~---~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V  413 (506)
T KOG0289|consen  339 TVVSDE---TSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSV  413 (506)
T ss_pred             EEEeec---cccceeEEeeEcC-CceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeE
Confidence            544311   1233578888886 67899999999999999998654 677889999999999999999999999999999


Q ss_pred             EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC--ccceeeecccccCCccceEEEEEEC
Q 024451          163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL--LAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      ++||+|..+....+...    +...+.+++|++.|.+|+.++++=.|++++-.  .......+    ..|.+..+++.|.
T Consensus       414 ~lwDLRKl~n~kt~~l~----~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~----~~~sg~st~v~Fg  485 (506)
T KOG0289|consen  414 KLWDLRKLKNFKTIQLD----EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL----ADHSGLSTGVRFG  485 (506)
T ss_pred             EEEEehhhcccceeecc----ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh----hhcccccceeeec
Confidence            99999976654443321    22368999999999999999888888887732  22222222    3577889999999


Q ss_pred             CCCCeEEEeECCCcEEEEec
Q 024451          241 ADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       241 p~~~~l~sgs~dg~i~~w~~  260 (267)
                      .+.++|+++|.|..++++.+
T Consensus       486 ~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  486 EHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ccceEEeeccchhheEEeec
Confidence            99999999999999999875

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=2.7e-27  Score=200.21  Aligned_cols=229  Identities=27%  Similarity=0.510  Sum_probs=187.1

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      ++|...+..|++|+.|.++++||....       .+..++.+|.+.|.++..-+   .++++|+.|.+|++|+++++..+
T Consensus       255 l~~~~~~~~lvsgS~D~t~rvWd~~sg-------~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l  324 (537)
T KOG0274|consen  255 LAFPSGGDKLVSGSTDKTERVWDCSTG-------ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACL  324 (537)
T ss_pred             EEEecCCCEEEEEecCCcEEeEecCCC-------cEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceE
Confidence            455556789999999999999997653       37889999999999998755   46888999999999999999887


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  162 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  162 (267)
                      .++.     +|...|.++...   ..++++|+.|+.|++|++. ..+.++.+.+|...|.++.+.+. +.+++|+.|++|
T Consensus       325 ~l~~-----~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~-~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  325 NLLR-----GHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPR-TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTI  394 (537)
T ss_pred             EEec-----cccccEEEEEec---CCEEEEEecCceEEEEEhh-hceeeeeecCCcceEEEEEecCc-ceEEeeeeccce
Confidence            7763     499999999986   4588999999999999998 45678999999999999988665 899999999999


Q ss_pred             EEEeCCCC-eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          163 RLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       163 ~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      ++||+++. +++..+.. +    ..-+..  +...+++|++++.||.|++||...++.+..+..   .|.+.|.++++. 
T Consensus       395 kvWdl~~~~~c~~tl~~-h----~~~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~---~~~~~v~~l~~~-  463 (537)
T KOG0274|consen  395 KVWDLRTKRKCIHTLQG-H----TSLVSS--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEG---RHVGGVSALALG-  463 (537)
T ss_pred             EeecCCchhhhhhhhcC-C----cccccc--cccccceeEeccccccEEEeecccCceeeeecc---CCcccEEEeecC-
Confidence            99999988 66554432 1    122333  345678999999999999999988887765532   266788888876 


Q ss_pred             CCCeEEEeECCCcEEEEecCce
Q 024451          242 DGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                       ...+++++.||++++|++...
T Consensus       464 -~~~il~s~~~~~~~l~dl~~~  484 (537)
T KOG0274|consen  464 -KEEILCSSDDGSVKLWDLRSG  484 (537)
T ss_pred             -cceEEEEecCCeeEEEecccC
Confidence             567888999999999997544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=9.6e-28  Score=196.76  Aligned_cols=240  Identities=19%  Similarity=0.316  Sum_probs=195.8

Q ss_pred             CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe--eEEE
Q 024451            7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL--RTSV   84 (267)
Q Consensus         7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~   84 (267)
                      |.+++|.|||.||+|++|+..... .....+....++.|.+-|..+.....+ +.|+|+|.|-+|++|+...+.  ...+
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~-~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~~~c~st  112 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDS-NEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDNTFCMST  112 (735)
T ss_pred             CCCceEEecCCCceEEEecccccc-CCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCcchhHhh
Confidence            677889999999999999986532 222234566788899888877665544 479999999999999998663  2222


Q ss_pred             eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc---------ceEEee-ccccceeEEEEecCCCEEE
Q 024451           85 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---------AVRTFH-GHEGDVNTVKFFPDGNRFG  154 (267)
Q Consensus        85 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---------~~~~~~-~~~~~i~~~~~~~~~~~l~  154 (267)
                           ...|.+.|.++++-..+..++++||-|+.|.+||+.....         ....+. ++...|++++..+.|..++
T Consensus       113 -----ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv  187 (735)
T KOG0308|consen  113 -----IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV  187 (735)
T ss_pred             -----hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence                 2469999999999667788999999999999999975421         122333 7888999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceE
Q 024451          155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI  234 (267)
Q Consensus       155 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  234 (267)
                      +|+..+-+++||.++.+.+..+..     +...|..+..+++|..++++++||.|++||+...+.+..+    ..|.+.|
T Consensus       188 sGgtek~lr~wDprt~~kimkLrG-----HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~----~vH~e~V  258 (735)
T KOG0308|consen  188 SGGTEKDLRLWDPRTCKKIMKLRG-----HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY----IVHKEGV  258 (735)
T ss_pred             ecCcccceEEeccccccceeeeec-----cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE----EeccCce
Confidence            999999999999999887766542     3346999999999999999999999999999888887664    3688889


Q ss_pred             EEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          235 TCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       235 ~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +++..+|+=.++.+|+.||.|..=++..
T Consensus       259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  259 WALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             EEEeeCCCcceEEecCCCCcEEecccCC
Confidence            9999999999999999999998777654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5.1e-26  Score=165.32  Aligned_cols=246  Identities=25%  Similarity=0.382  Sum_probs=186.7

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEec---CCCeeEEEee-CCCeEEEEeC
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP---DEDTHLITSS-GDQTCVLWDI   76 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~-~d~~v~iwd~   76 (267)
                      +|.+|+|+|.+|++|+.|++|++--....+.+  -......+..|.+-|..++|..   .++..|++++ .|..|.+=|-
T Consensus        93 yc~~ws~~geliatgsndk~ik~l~fn~dt~~--~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc  170 (350)
T KOG0641|consen   93 YCTAWSPCGELIATGSNDKTIKVLPFNADTCN--ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC  170 (350)
T ss_pred             EEEEecCccCeEEecCCCceEEEEeccccccc--ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence            57899999999999999999998765432211  1122345677999999999963   2345677654 4667777777


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee--cc-----ccceeEEEEecC
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GH-----EGDVNTVKFFPD  149 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~-----~~~i~~~~~~~~  149 (267)
                      .++.....+     .+|.+.|.++--  .++-++++|+.|.+|++||++... .+..+.  -|     ...|.+++..|.
T Consensus       171 ~~g~~~~a~-----sghtghilalys--wn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdps  242 (350)
T KOG0641|consen  171 GRGQGFHAL-----SGHTGHILALYS--WNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPS  242 (350)
T ss_pred             CCCCcceee-----cCCcccEEEEEE--ecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCC
Confidence            776655544     578888877632  356799999999999999998654 233332  12     245888999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc-cccC
Q 024451          150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG-SLQN  228 (267)
Q Consensus       150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~~~~  228 (267)
                      |+++++|-.|....+||++.+.+++.+..     +...|.++.|+|.-.++++++.|..|++-|++.. ...++. ....
T Consensus       243 grll~sg~~dssc~lydirg~r~iq~f~p-----hsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~vv~  316 (350)
T KOG0641|consen  243 GRLLASGHADSSCMLYDIRGGRMIQRFHP-----HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMVVA  316 (350)
T ss_pred             cceeeeccCCCceEEEEeeCCceeeeeCC-----CccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEEEE
Confidence            99999999999999999999988877643     3346999999999999999999999999997532 111111 1224


Q ss_pred             CccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          229 SHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       229 ~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .|.+.+..+.|+|..--+++.|.|+++.+|.+++
T Consensus       317 ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~~  350 (350)
T KOG0641|consen  317 EHKDKAIQCRWHPQDFSFISSSADKTATLWALNG  350 (350)
T ss_pred             eccCceEEEEecCccceeeeccCcceEEEeccCC
Confidence            6888888999999999999999999999998764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=9e-27  Score=175.73  Aligned_cols=241  Identities=19%  Similarity=0.291  Sum_probs=178.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++.|+|.+..|+.+++||++++|++....        .+..-.|..++.+|.|.+.  ..+++|+.||.|+.+|+.++..
T Consensus        18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~--------l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   18 SVKFSPSSSDLLVSSWDGSLRLYDVPANS--------LKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNE   87 (323)
T ss_pred             eEEEcCcCCcEEEEeccCcEEEEeccchh--------hhhheecCCceeeeeccCC--ceEEEeccCceEEEEEecCCcc
Confidence            36789999999999999999999987631        2233468899999999874  4689999999999999998764


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ..+      ..|...+.++...+. ...+++|++|++|++||.+. ......+. -...|.++...  ++.|+.|+.|..
T Consensus        88 ~~i------gth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~-~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~  156 (323)
T KOG1036|consen   88 DQI------GTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRN-KVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRK  156 (323)
T ss_pred             eee------ccCCCceEEEEeecc-CCeEEEcccCccEEEEeccc-cccccccc-cCceEEEEecc--CCEEEEeecCce
Confidence            432      358899999999854 45689999999999999985 22233332 23478888864  678999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc------ceeeeccccc---CCccc
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA------KVVLNLGSLQ---NSHEG  232 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~------~~~~~~~~~~---~~~~~  232 (267)
                      +.+||+++.....   +.....-.-.+.++++-|++.-.++++-||.|.+=.....      +...+..+..   ..---
T Consensus       157 v~iyDLRn~~~~~---q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y  233 (323)
T KOG1036|consen  157 VLIYDLRNLDEPF---QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY  233 (323)
T ss_pred             EEEEEcccccchh---hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence            9999999754332   1112222345789999999999999999998876332222      1111111100   01123


Q ss_pred             eEEEEEECCCCCeEEEeECCCcEEEEecCceEec
Q 024451          233 RITCLGLSADGSALCTGSWDTNLKIWAFGGYRRV  266 (267)
Q Consensus       233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~~  266 (267)
                      +|++++|+|-...||||+.||.|.+|+....+|+
T Consensus       234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl  267 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL  267 (323)
T ss_pred             EeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence            8999999999999999999999999998877765

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.7e-27  Score=185.66  Aligned_cols=235  Identities=26%  Similarity=0.385  Sum_probs=181.3

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      ++++.++||++|++|+.|..+.||+...-       .....+++|.+.|.++.|-. +...+++++.|++|++|+++...
T Consensus       206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~-------ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s  277 (479)
T KOG0299|consen  206 LTLAVSSDGKYLATGGRDRHVQIWDCDTL-------EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS  277 (479)
T ss_pred             EEEEEcCCCcEEEecCCCceEEEecCccc-------chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH
Confidence            47889999999999999999999998763       24556899999999999965 44579999999999999997543


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ...+     ..+|.+.|..+..... .+.+-.|+.|+++++|++..  .....+.+|.+.+.|++|-. ..+|++|+.||
T Consensus       278 ~vet-----lyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In-~~HfvsGSdnG  348 (479)
T KOG0299|consen  278 YVET-----LYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNG  348 (479)
T ss_pred             HHHH-----HhCCccceeeechhcc-cceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEec-ccceeeccCCc
Confidence            3322     3589999999988743 45555566999999999853  34556788999999999974 57899999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCC-------CcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc-eeeecccccCCccc
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEI-------PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK-VVLNLGSLQNSHEG  232 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~  232 (267)
                      .|-+|++...+.+......|+....       .+|++++..|....+++|+.+|.|++|-...+- .+..+..+  ...+
T Consensus       349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l--s~~G  426 (479)
T KOG0299|consen  349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSL--SLVG  426 (479)
T ss_pred             eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeec--cccc
Confidence            9999999887766555444443222       379999999999999999999999999876552 12112111  3567


Q ss_pred             eEEEEEECCCCCeEEE-eECCCc
Q 024451          233 RITCLGLSADGSALCT-GSWDTN  254 (267)
Q Consensus       233 ~v~~~~~~p~~~~l~s-gs~dg~  254 (267)
                      .|++++|+++|+.|++ .+....
T Consensus       427 fVNsl~f~~sgk~ivagiGkEhR  449 (479)
T KOG0299|consen  427 FVNSLAFSNSGKRIVAGIGKEHR  449 (479)
T ss_pred             EEEEEEEccCCCEEEEecccccc
Confidence            8999999999995554 444433

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.7e-27  Score=185.64  Aligned_cols=240  Identities=25%  Similarity=0.327  Sum_probs=185.2

Q ss_pred             ceeeCCCCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      .++|+|... .+++++.- .+.+|+....       ...+.+..-+.-|+++.|-.++ .++++|...|.|+++|..+..
T Consensus        31 sl~fsp~~P~d~aVt~S~-rvqly~~~~~-------~~~k~~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~  101 (487)
T KOG0310|consen   31 SLCFSPKHPYDFAVTSSV-RVQLYSSVTR-------SVRKTFSRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRV  101 (487)
T ss_pred             eEecCCCCCCceEEeccc-EEEEEecchh-------hhhhhHHhhccceeEEEeecCC-eEEEccCCcCcEEEeccccHH
Confidence            478998663 34444433 5889987542       2344455667789999997765 688999999999999965532


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEEEeeCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDD  159 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d  159 (267)
                      -.     +...+|+.++..+.|++.++.++++|+.|+.+++||+.... .+..+.+|++-|.|.+++|... .+++||-|
T Consensus       102 iL-----R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYD  175 (487)
T KOG0310|consen  102 IL-----RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYD  175 (487)
T ss_pred             HH-----HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCC
Confidence            22     22357999999999999999999999999999999997543 4667889999999999999655 78899999


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      |+||+||++...... ..    .++..+|.++.+-|.|..+++++ ...+++||+..+......   ...|...|+|+.+
T Consensus       176 g~vrl~DtR~~~~~v-~e----lnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~---~~~H~KtVTcL~l  246 (487)
T KOG0310|consen  176 GKVRLWDTRSLTSRV-VE----LNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTS---MFNHNKTVTCLRL  246 (487)
T ss_pred             ceEEEEEeccCCcee-EE----ecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhh---hhcccceEEEEEe
Confidence            999999999763211 11    23345799999999999998874 457999998855443221   1349999999999


Q ss_pred             CCCCCeEEEeECCCcEEEEecCceEe
Q 024451          240 SADGSALCTGSWDTNLKIWAFGGYRR  265 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w~~~~~~~  265 (267)
                      ..++.-|++||-|+.+++|+++.++-
T Consensus       247 ~s~~~rLlS~sLD~~VKVfd~t~~Kv  272 (487)
T KOG0310|consen  247 ASDSTRLLSGSLDRHVKVFDTTNYKV  272 (487)
T ss_pred             ecCCceEeecccccceEEEEccceEE
Confidence            99999999999999999999877653

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=6.3e-28  Score=185.62  Aligned_cols=231  Identities=20%  Similarity=0.338  Sum_probs=179.1

Q ss_pred             ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      |++-+|.. ..+++|+.||.|++||+...       .+.+++.+|.+.|..+.+..   +.+++++.|++|+.|.++-. 
T Consensus        71 ~lakhp~~ls~~aSGs~DG~VkiWnlsqR-------~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~-  139 (433)
T KOG0268|consen   71 CLAKHPNKLSTVASGSCDGEVKIWNLSQR-------ECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGP-  139 (433)
T ss_pred             hhhcCcchhhhhhccccCceEEEEehhhh-------hhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCC-
Confidence            45556655 67999999999999998753       47788999999999999866   35899999999999987653 


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDD  159 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d  159 (267)
                      ...++-+      ...+..++-+. ....++|+|.  .|-|||... ..++.++.--.+.|.++.|+|. ...|++|+.|
T Consensus       140 p~~tilg------~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R-~~Pv~smswG~Dti~svkfNpvETsILas~~sD  209 (433)
T KOG0268|consen  140 PLHTILG------KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQR-DNPVSSMSWGADSISSVKFNPVETSILASCASD  209 (433)
T ss_pred             cceeeec------ccccccccccc-ccccccccCc--eeeeccccc-CCccceeecCCCceeEEecCCCcchheeeeccC
Confidence            2233211      12233333332 2346777776  488999864 4577788766788999999995 4678888899


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      +.|-+||++.++.+.......      .-..++|+|..-.+++|++|..++.||++........   ...|.+.|..++|
T Consensus       210 rsIvLyD~R~~~Pl~KVi~~m------RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v---~~dhvsAV~dVdf  280 (433)
T KOG0268|consen  210 RSIVLYDLRQASPLKKVILTM------RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV---HKDHVSAVMDVDF  280 (433)
T ss_pred             CceEEEecccCCccceeeeec------cccceecCccccceeeccccccceehhhhhhcccchh---hcccceeEEEecc
Confidence            999999999988776544322      2368899998888999999999999998765544433   4679999999999


Q ss_pred             CCCCCeEEEeECCCcEEEEecCc
Q 024451          240 SADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ||.|+.+++||.|++|+||..+.
T Consensus       281 sptG~EfvsgsyDksIRIf~~~~  303 (433)
T KOG0268|consen  281 SPTGQEFVSGSYDKSIRIFPVNH  303 (433)
T ss_pred             CCCcchhccccccceEEEeecCC
Confidence            99999999999999999998754

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.5e-27  Score=178.03  Aligned_cols=246  Identities=26%  Similarity=0.413  Sum_probs=193.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeec------CCCCCC-------------------------CCC--CcccccccCCeee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNL------NSPTDK-------------------------DGN--LPVSRMLSGHKGY   48 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~------~~~~~~-------------------------~~~--~~~~~~~~~h~~~   48 (267)
                      +++|++.+.++++++-|++..||..      ..+..+                         ++.  ..+...+.+|.+.
T Consensus       195 sikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v  274 (481)
T KOG0300|consen  195 SIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV  274 (481)
T ss_pred             eEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc
Confidence            5789999999999999999999972      221100                         000  0123457899999


Q ss_pred             EEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc
Q 024451           49 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS  128 (267)
Q Consensus        49 v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~  128 (267)
                      |.++.|...+ +.++++++|.+-.+||+++++.+..+     .||....+.++.+| .++++++.+.|.+.++||++...
T Consensus       275 V~a~dWL~gg-~Q~vTaSWDRTAnlwDVEtge~v~~L-----tGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI  347 (481)
T KOG0300|consen  275 VSACDWLAGG-QQMVTASWDRTANLWDVETGEVVNIL-----TGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAI  347 (481)
T ss_pred             eEehhhhcCc-ceeeeeeccccceeeeeccCceeccc-----cCcchhccccccCC-cceEEEEeccCceeEeccchhhc
Confidence            9999998854 57999999999999999999877665     57888888887775 67899999999999999999766


Q ss_pred             cceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeee-EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC
Q 024451          129 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  207 (267)
Q Consensus       129 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg  207 (267)
                      ..+..+++|...|+++.|..+ ..+++|+.|.+|++||+++-... ..+.      ...++..++.+..+.+|+.-..+.
T Consensus       348 ~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR------tdS~~NRvavs~g~~iIAiPhDNR  420 (481)
T KOG0300|consen  348 QSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR------TDSPANRVAVSKGHPIIAIPHDNR  420 (481)
T ss_pred             ceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee------cCCccceeEeecCCceEEeccCCc
Confidence            778889999999999999865 56899999999999999864432 2221      123578888888888999999999


Q ss_pred             eEEEEeCCccceeeecccccCCccceEEEEEECCCC--CeEEEeECCCcEEEEecC
Q 024451          208 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG--SALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       208 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~sgs~dg~i~~w~~~  261 (267)
                      .|++||+...+...-.......|..-|.|++|..+-  .-|.+|+-|..+.=|.++
T Consensus       421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             eEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence            999999876554432222345799999999997442  346788899999999875

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.6e-26  Score=173.83  Aligned_cols=239  Identities=18%  Similarity=0.267  Sum_probs=177.4

Q ss_pred             eEEEccCCCeEEEeecCCCCCC-----CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451           11 SVACGGLDSVCSIFNLNSPTDK-----DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF   85 (267)
Q Consensus        11 ~l~~~~~d~~v~~w~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~   85 (267)
                      .++.|+++..|--+++..+...     +..+.....+..|.++|++++.+   ..+++|||.|.+|+|||+.+..+...+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~l   79 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGIL   79 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcce
Confidence            3788899988888887654311     11223356778999999999984   369999999999999999876554443


Q ss_pred             CCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEE
Q 024451           86 GGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL  164 (267)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  164 (267)
                           ..|.+.|+++.|.++. ...+++|+.||.|.+|+.... .....+++|.+.|+.++.+|.+++.++.+.|+.+++
T Consensus        80 -----l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~  153 (362)
T KOG0294|consen   80 -----LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRT  153 (362)
T ss_pred             -----eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcCCceeee
Confidence                 4689999999998653 236789999999999998754 567889999999999999999999999999999999


Q ss_pred             EeCCCCeeeEEEEeec--------CCC--------------------------CCCcEEEEEEccCCCEEEEEEeCCeEE
Q 024451          165 FDIRTGHQLQVYYQQH--------GEN--------------------------EIPHVTSIAFSISGRLLFAGYSNGDCY  210 (267)
Q Consensus       165 wd~~~~~~~~~~~~~~--------~~~--------------------------~~~~v~~~~~s~~~~~l~~g~~dg~i~  210 (267)
                      ||+-.++.-....-.+        ..+                          ....+.++.|- ++..+++|..|+.+.
T Consensus       154 WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~  232 (362)
T KOG0294|consen  154 WNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWIS  232 (362)
T ss_pred             ehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEE
Confidence            9987765322111000        000                          00112233332 456788888888888


Q ss_pred             EEeCCccceeeecccccCCccceEEEEEE--CCCCCeEEEeECCCcEEEEecCce
Q 024451          211 VWDTLLAKVVLNLGSLQNSHEGRITCLGL--SADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       211 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      +||.........+    ..|..+|..+.+  .|++.+|+++|.||.|++|++..-
T Consensus       233 ~~D~ds~~~~~~~----~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  233 LKDTDSDTPLTEF----LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EeccCCCccceee----ecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            8887654443332    579999999884  578999999999999999998654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=1.2e-27  Score=186.68  Aligned_cols=238  Identities=25%  Similarity=0.350  Sum_probs=186.2

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      ..|-++...|++||.|..|++|++....     .....++.|..+.|+++.|.+++ .++++++.|+.+++|++.+....
T Consensus       181 v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-----~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r~~  254 (459)
T KOG0288|consen  181 VEFLRNSDTLATGGSDRIIKLWNVLGEK-----SELISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLRLR  254 (459)
T ss_pred             eEEccCcchhhhcchhhhhhhhhcccch-----hhhhhhhhccCCCcceeeecCCC-ceEEeecCCCceeeeeccchhhh
Confidence            4577777889999999999999986522     23566788999999999999876 47889999999999999987666


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  162 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  162 (267)
                      .++     .+|++.+.++.+...+.+ +++|+.|.+||.||+.. ....+.+. ....+..+...  ...++++-.|++|
T Consensus       255 ~TL-----sGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k-~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~Dkkv  324 (459)
T KOG0288|consen  255 HTL-----SGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQK-AYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKV  324 (459)
T ss_pred             hhh-----cccccceeeehhhccccc-eeeccccchhhhhhhhh-hheecccc-ccccccceEec--ceeeeecccccce
Confidence            555     579999999999865554 89999999999999864 23333332 23445666654  4578889999999


Q ss_pred             EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC
Q 024451          163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  242 (267)
Q Consensus       163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  242 (267)
                      |+||.++.........      .+.|+++..++++..+.+.+-|..+.+.|+++.+....+.-........++.+.|||+
T Consensus       325 RfwD~Rs~~~~~sv~~------gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd  398 (459)
T KOG0288|consen  325 RFWDIRSADKTRSVPL------GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD  398 (459)
T ss_pred             EEEeccCCceeeEeec------CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence            9999998876544321      2369999999999999999999999999998876554432111122334889999999


Q ss_pred             CCeEEEeECCCcEEEEecCc
Q 024451          243 GSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       243 ~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +.|+|+||.||.|.||+..+
T Consensus       399 ~~YvaAGS~dgsv~iW~v~t  418 (459)
T KOG0288|consen  399 GSYVAAGSADGSVYIWSVFT  418 (459)
T ss_pred             CceeeeccCCCcEEEEEccC
Confidence            99999999999999998644

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=7.2e-28  Score=191.30  Aligned_cols=212  Identities=28%  Similarity=0.506  Sum_probs=166.2

Q ss_pred             ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC-CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC
Q 024451           38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  116 (267)
Q Consensus        38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d  116 (267)
                      ....+.||+..|.++.|.|...-+|++++.|+.|+|||+-. +..+.+|     .+|...|..++|+.. +..|++++.|
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-----~gH~k~Vrd~~~s~~-g~~fLS~sfD  279 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-----KGHRKPVRDASFNNC-GTSFLSASFD  279 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-----hcchhhhhhhhcccc-CCeeeeeecc
Confidence            45578899999999999996667899999999999999976 4555554     589999999999964 5668899999


Q ss_pred             CeEEEEeCCCcccceEEeeccccceeEEEEecCC-CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc
Q 024451          117 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  195 (267)
Q Consensus       117 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  195 (267)
                      +.+++||++++. ....+. -...+.|+.|+|++ +.|++|+.|+.|+.||+++++.++.+-     .+.+.|..+.|-+
T Consensus       280 ~~lKlwDtETG~-~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-----~hLg~i~~i~F~~  352 (503)
T KOG0282|consen  280 RFLKLWDTETGQ-VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-----RHLGAILDITFVD  352 (503)
T ss_pred             eeeeeeccccce-EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-----hhhhheeeeEEcc
Confidence            999999998654 444443 23457899999987 889999999999999999988654432     2345799999999


Q ss_pred             CCCEEEEEEeCCeEEEEeCCccceeeecc------------------------------------------cccCCcc--
Q 024451          196 SGRLLFAGYSNGDCYVWDTLLAKVVLNLG------------------------------------------SLQNSHE--  231 (267)
Q Consensus       196 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~------------------------------------------~~~~~~~--  231 (267)
                      +|..+++.+.|+.++||+...+-.+....                                          ....+|.  
T Consensus       353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va  432 (503)
T KOG0282|consen  353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA  432 (503)
T ss_pred             CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence            99999999999999999865432111000                                          0001232  


Q ss_pred             ceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          232 GRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       232 ~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +.-..+.|||||++|++|+.||.+.+|+...
T Consensus       433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt  463 (503)
T KOG0282|consen  433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT  463 (503)
T ss_pred             CceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence            3345689999999999999999999999643

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=1.3e-25  Score=166.64  Aligned_cols=208  Identities=26%  Similarity=0.412  Sum_probs=172.0

Q ss_pred             cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEE
Q 024451           41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR  120 (267)
Q Consensus        41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~  120 (267)
                      .++||..+++-+.++.+++ +|++++.|.+..+|-..+++++.++     .+|.+.|++++++- ..+.+++|+.|.+++
T Consensus         5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGty-----~GHtGavW~~Did~-~s~~liTGSAD~t~k   77 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGTY-----DGHTGAVWCCDIDW-DSKHLITGSADQTAK   77 (327)
T ss_pred             ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeeee-----cCCCceEEEEEecC-CcceeeeccccceeE
Confidence            4689999999999999765 8999999999999999889888877     48999999999985 456789999999999


Q ss_pred             EEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-----CCcEEEEeCCCCe-------eeEEEEeecCCCCCCcE
Q 024451          121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-----DGTCRLFDIRTGH-------QLQVYYQQHGENEIPHV  188 (267)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~v  188 (267)
                      +||++.+ +.+..++ -+.+|..+.|+++|++++...+     .+.|.++|++...       +...+.     .....+
T Consensus        78 LWDv~tG-k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-----t~~ski  150 (327)
T KOG0643|consen   78 LWDVETG-KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-----TPDSKI  150 (327)
T ss_pred             EEEcCCC-cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-----CCccce
Confidence            9999864 4555554 3578999999999998877654     3579999998432       122221     122468


Q ss_pred             EEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceEe
Q 024451          189 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR  265 (267)
Q Consensus       189 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~  265 (267)
                      +.+-|+|-+.+|++|.+||.|.+||+++++......   ..|...|+.+.++|+..+++++|.|.+.++||+..|..
T Consensus       151 t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~---~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v  224 (327)
T KOG0643|consen  151 TSALWGPLGETIIAGHEDGSISIYDARTGKELVDSD---EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV  224 (327)
T ss_pred             eeeeecccCCEEEEecCCCcEEEEEcccCceeeech---hhhccccccccccCCcceEEecccCccceeeeccceee
Confidence            889999999999999999999999999887665443   46888999999999999999999999999999877753

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=1.3e-26  Score=182.87  Aligned_cols=209  Identities=18%  Similarity=0.359  Sum_probs=167.4

Q ss_pred             ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      .++|++.. -.|++++.|+++++||+...............+.+|...|..|+|+|....++++++.|+.+.|||.++..
T Consensus       182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~  261 (422)
T KOG0264|consen  182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT  261 (422)
T ss_pred             ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence            35676533 56999999999999999764332333455667899999999999999888899999999999999999631


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDD  159 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d  159 (267)
                       ...  .....+|...+++++|+|-+..+|+||+.|++|++||+|...++...+.+|...|.++.|+|. ...||+++.|
T Consensus       262 -~~~--~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D  338 (422)
T KOG0264|consen  262 -SKP--SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD  338 (422)
T ss_pred             -CCC--cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC
Confidence             110  112357999999999999999999999999999999999888888899999999999999995 5688999999


Q ss_pred             CcEEEEeCCCCeee-----------EEEEeecCCCCCCcEEEEEEccCCCEEE-EEEeCCeEEEEeCC
Q 024451          160 GTCRLFDIRTGHQL-----------QVYYQQHGENEIPHVTSIAFSISGRLLF-AGYSNGDCYVWDTL  215 (267)
Q Consensus       160 ~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~g~~dg~i~i~d~~  215 (267)
                      +.+.+||+..-...           ..++. | .++...|..+.|+|+..+.+ +...|+.+.||.+.
T Consensus       339 ~rl~vWDls~ig~eq~~eda~dgppEllF~-H-gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  339 RRLNVWDLSRIGEEQSPEDAEDGPPELLFI-H-GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CcEEEEeccccccccChhhhccCCcceeEE-e-cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            99999998653221           12222 2 23556799999999998764 56688999999864

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.9e-26  Score=192.29  Aligned_cols=208  Identities=27%  Similarity=0.404  Sum_probs=159.6

Q ss_pred             ccc-CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE------------------------------------
Q 024451           41 MLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS------------------------------------   83 (267)
Q Consensus        41 ~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~------------------------------------   83 (267)
                      .+. +|++.|.++.|++++ .|||+||.|+.|+||.+...+...                                    
T Consensus       261 e~~~ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             ccccccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            445 899999999999976 699999999999999875510000                                    


Q ss_pred             ---------Ee----------CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEE
Q 024451           84 ---------VF----------GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV  144 (267)
Q Consensus        84 ---------~~----------~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~  144 (267)
                               .+          +.....||...|..+.|+-  .++|++++.|.+||+|.+.. ...++.+ .|.+-|+|+
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~-~~CL~~F-~HndfVTcV  415 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGR-KECLKVF-SHNDFVTCV  415 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCC-cceeeEE-ecCCeeEEE
Confidence                     00          0011248999999999984  45889999999999999874 4455656 599999999


Q ss_pred             EEec-CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451          145 KFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  223 (267)
Q Consensus       145 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  223 (267)
                      +|+| |.+||++|+-|+++|||++...+.. .+...+     .-|+++||.|+|++.++|+-+|..++|+....+.....
T Consensus       416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-~W~Dl~-----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  416 AFNPVDDRYFISGSLDGKVRLWSISDKKVV-DWNDLR-----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             EecccCCCcEeecccccceEEeecCcCeeE-eehhhh-----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence            9999 7899999999999999999765432 222211     35899999999999999999999999998766654432


Q ss_pred             ccc-----cCCccceEEEEEECCCCC-eEEEeECCCcEEEEec
Q 024451          224 GSL-----QNSHEGRITCLGLSADGS-ALCTGSWDTNLKIWAF  260 (267)
Q Consensus       224 ~~~-----~~~~~~~v~~~~~~p~~~-~l~sgs~dg~i~~w~~  260 (267)
                      .-.     ...|. .|+.+.|.|... -+++.|.|-.||||+.
T Consensus       490 ~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  490 HIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             eEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence            110     11244 899999997543 4666789999999996

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=1.6e-26  Score=174.87  Aligned_cols=217  Identities=23%  Similarity=0.418  Sum_probs=170.8

Q ss_pred             ccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC----eeEEEeCC---------ccccCCccceEEEEEeCCC
Q 024451           40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG----LRTSVFGG---------EFQSGHTADVLSVSISGSN  106 (267)
Q Consensus        40 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~---------~~~~~~~~~i~~~~~~~~~  106 (267)
                      ..+..|++++.+.+|+|++ .++++|+.|.+|+|.|++..    +...+..+         +....|.+.|+.+.|+|. 
T Consensus       106 ~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr-  183 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR-  183 (430)
T ss_pred             EEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch-
Confidence            4567899999999999976 68999999999999999721    11111111         122468899999999975 


Q ss_pred             CeEEEEecCCCeEEEEeCCCccc--ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCC
Q 024451          107 SRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE  184 (267)
Q Consensus       107 ~~~~~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  184 (267)
                      ..++++++.|++|++||......  ..+.+ ....+|.++.|+|.|.+++.|.+--++++||+.+-++.....  ....+
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan--Pd~qh  260 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN--PDDQH  260 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC--ccccc
Confidence            56899999999999999864321  12222 235679999999999999999999999999999876643221  12334


Q ss_pred             CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCcc-ceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          185 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       185 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      ...|.++.+++.++..++|+.||.|++||--.++.+..+.   ..|. ..|.++.|..||+|+++.+.|..+++|.+..-
T Consensus       261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~---~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG---NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH---hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence            5679999999999999999999999999988888776654   3454 57999999999999999999999999987543


Q ss_pred             E
Q 024451          264 R  264 (267)
Q Consensus       264 ~  264 (267)
                      +
T Consensus       338 R  338 (430)
T KOG0640|consen  338 R  338 (430)
T ss_pred             c
Confidence            3

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=4.7e-26  Score=189.04  Aligned_cols=241  Identities=20%  Similarity=0.312  Sum_probs=194.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC--CCeeEEEeeCCCeEEEEeCCCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      +++.+|+|++|++|..-|.+++|++..-       .....+.+|..+|.|+.|+..  +..+|++|+.|.-|.+||+...
T Consensus       464 ~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  464 ALAVSPDGQHLASGDRGGNLRVYDLQEL-------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             EEEECCCcceecccCccCceEEEEehhh-------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            5789999999999999999999998752       355678899999999999742  2357999999999999999654


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcccceEEeecc-----ccceeEEEEecCCCEE
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGH-----EGDVNTVKFFPDGNRF  153 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l  153 (267)
                      ....    +...+|...|+++.|...+ +..+++++.|+.|.+ +..+.......+..|     ...++.++..|..+++
T Consensus       537 y~l~----qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v  611 (1080)
T KOG1408|consen  537 YDLV----QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV  611 (1080)
T ss_pred             cchh----hhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence            3221    2335799999999998543 356789999987744 333211112222211     3468899999999999


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccce
Q 024451          154 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR  233 (267)
Q Consensus       154 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  233 (267)
                      +++++|+.|+|||+.++++...|++.+.  +.+....+..+|.|.|+++.++|..+.++|..+++.+..+    .+|.+.
T Consensus       612 ~t~cQDrnirif~i~sgKq~k~FKgs~~--~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m----~GHsE~  685 (1080)
T KOG1408|consen  612 VTVCQDRNIRIFDIESGKQVKSFKGSRD--HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM----TGHSEA  685 (1080)
T ss_pred             EEEecccceEEEeccccceeeeeccccc--CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh----cCcchh
Confidence            9999999999999999999888776543  3345677889999999999999999999999999988766    579999


Q ss_pred             EEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          234 ITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       234 v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      |+.+.|.+|.++|++.+.||-|.+|.+
T Consensus       686 VTG~kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  686 VTGVKFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             eeeeeecccchhheeecCCceEEEEEC
Confidence            999999999999999999999999986

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.3e-27  Score=198.07  Aligned_cols=224  Identities=23%  Similarity=0.428  Sum_probs=187.5

Q ss_pred             CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451            6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF   85 (267)
Q Consensus         6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~   85 (267)
                      -..++.+++||+|-.+-+|....+.       ..-.+.+|..+|-|+.|++.+ .+|++|+.+|+|++||++....+.. 
T Consensus        37 ~~s~r~~~~Gg~~~k~~L~~i~kp~-------~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~vrt-  107 (825)
T KOG0267|consen   37 RKSSRSLVTGGEDEKVNLWAIGKPN-------AITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKIVRT-  107 (825)
T ss_pred             eccceeeccCCCceeeccccccCCc-------hhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhhhhhh-
Confidence            3467889999999999999987654       233588999999999999864 6899999999999999987654433 


Q ss_pred             CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEE
Q 024451           86 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF  165 (267)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw  165 (267)
                          ..+|...+.++.|+| ...++++|+.|+.+++||.+.. .+...+.+|...+..+.|.|+|++++++++|.+++||
T Consensus       108 ----Ltgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~  181 (825)
T KOG0267|consen  108 ----LTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIW  181 (825)
T ss_pred             ----hhccccCcceeeecc-ceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecCCCceeeccCCcceeeee
Confidence                357999999999986 5677899999999999999843 4677888899999999999999999999999999999


Q ss_pred             eCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCe
Q 024451          166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA  245 (267)
Q Consensus       166 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  245 (267)
                      |...++.+..|..     +.+.+.++.|+|..-.++.|+.|+.+++||+++.+.+...    ......|.+++|+|+++.
T Consensus       182 d~~agk~~~ef~~-----~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~----~~~~~~v~~~~fn~~~~~  252 (825)
T KOG0267|consen  182 DLTAGKLSKEFKS-----HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG----KPETDGVRSLAFNPDGKI  252 (825)
T ss_pred             ccccccccccccc-----ccccccccccCchhhhhccCCCCceeeeeccceeEEeecc----CCccCCceeeeecCCcee
Confidence            9988876655432     2346888999999999999999999999999887776544    234678999999999999


Q ss_pred             EEEeECCC
Q 024451          246 LCTGSWDT  253 (267)
Q Consensus       246 l~sgs~dg  253 (267)
                      +++|-.+.
T Consensus       253 ~~~G~q~s  260 (825)
T KOG0267|consen  253 VLSGEQIS  260 (825)
T ss_pred             eecCchhh
Confidence            99887653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=2.5e-26  Score=168.95  Aligned_cols=196  Identities=24%  Similarity=0.481  Sum_probs=159.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +|+|+.|.++|+|||.|..+|+||+..+.-      ....+.+|.+.|..+.|...+ ..++|++.|++||+||..++..
T Consensus       105 ~~af~~ds~~lltgg~ekllrvfdln~p~A------pp~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~  177 (334)
T KOG0278|consen  105 AVAFSQDSNYLLTGGQEKLLRVFDLNRPKA------PPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTE  177 (334)
T ss_pred             eEEecccchhhhccchHHHhhhhhccCCCC------CchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcE
Confidence            589999999999999999999999976542      234578999999999998754 5688889999999999999987


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      +..+.      -...+.++.+++. ++ +++-...+.|++||.+. ..+++.++- ...|.+..++|+...+++|++|..
T Consensus       178 v~sL~------~~s~VtSlEvs~d-G~-ilTia~gssV~Fwdaks-f~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~  247 (334)
T KOG0278|consen  178 VQSLE------FNSPVTSLEVSQD-GR-ILTIAYGSSVKFWDAKS-FGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFK  247 (334)
T ss_pred             EEEEe------cCCCCcceeeccC-CC-EEEEecCceeEEecccc-ccceeeccC-ccccccccccCCCceEEecCcceE
Confidence            76653      2456788888864 44 45666677899999874 335555542 356889999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  218 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~  218 (267)
                      +..||..++.++..+.    ..+.++|.++.|+|+|...++|+.||.|+||.+...+
T Consensus       248 ~~kfDy~TgeEi~~~n----kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  248 VYKFDYNTGEEIGSYN----KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             EEEEeccCCceeeecc----cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            9999999998877642    2344689999999999999999999999999875443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=3.4e-25  Score=166.64  Aligned_cols=248  Identities=26%  Similarity=0.387  Sum_probs=181.5

Q ss_pred             CCCCeEEEccCCCeEEEeecCCCCCCCCC---C--c---ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451            7 PTGQSVACGGLDSVCSIFNLNSPTDKDGN---L--P---VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~---~--~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      ..|+++++|+.||.+.+||++..+..+..   .  .   ....-.+|+..|.++.|-|-+...+.+++.|.++++||.++
T Consensus        54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT  133 (397)
T KOG4283|consen   54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT  133 (397)
T ss_pred             ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence            36899999999999999999875422111   0  0   12345689999999999998888899999999999999987


Q ss_pred             CeeEEEeCC---------------------------------------ccccCCccceEEEEEeCCCCeEEEEecCCCeE
Q 024451           79 GLRTSVFGG---------------------------------------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTA  119 (267)
Q Consensus        79 ~~~~~~~~~---------------------------------------~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i  119 (267)
                      .+....|..                                       ...++|...|.++.|+|.+.-.+++|+.||.|
T Consensus       134 lQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~i  213 (397)
T KOG4283|consen  134 LQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAI  213 (397)
T ss_pred             ceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceE
Confidence            543332210                                       12368999999999999999999999999999


Q ss_pred             EEEeCCCcccceEEe--------------eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC--CC
Q 024451          120 RLWDTRVASRAVRTF--------------HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--EN  183 (267)
Q Consensus       120 ~iwd~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~  183 (267)
                      |+||++......+.+              .+|.+.++.++|..++.++++++.|..+++|+..+++....-+.+.-  ..
T Consensus       214 rlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~  293 (397)
T KOG4283|consen  214 RLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT  293 (397)
T ss_pred             EEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccccc
Confidence            999998543222222              25677899999999999999999999999999988764332211110  10


Q ss_pred             CCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          184 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       184 ~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ....+. +. +.+...++---.++.+.++++..+..+..+    ..|...|.|.++-|+=+.+.+|+.|+.|..|..
T Consensus       294 ~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l----~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  294 TSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL----STHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEee----ecccceeeEEeecCchhhhhccccCCccccccc
Confidence            011111 22 222233333335588899988777665443    568889999999999999999999999999964

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=2.4e-25  Score=192.07  Aligned_cols=244  Identities=23%  Similarity=0.311  Sum_probs=186.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCC--C---------CCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSP--T---------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT   70 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~--~---------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~   70 (267)
                      |.-|+|||++||+|+.|+.|-+|.....  .         .....++...++.+|.+.|..+.|+|+ +.++++++.|++
T Consensus        74 CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s~Dns  152 (942)
T KOG0973|consen   74 CVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVSLDNS  152 (942)
T ss_pred             EEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-ccEEEEecccce
Confidence            4559999999999999999999998731  0         001123466788999999999999995 579999999999


Q ss_pred             EEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc------ccceeEE
Q 024451           71 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------EGDVNTV  144 (267)
Q Consensus        71 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~i~~~  144 (267)
                      |.|||..+-....++     .+|...|.-+.|+|. +++|++-+.|++|+||.+.... ..+.+.++      ..-+..+
T Consensus       153 Viiwn~~tF~~~~vl-----~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~-i~k~It~pf~~~~~~T~f~Rl  225 (942)
T KOG0973|consen  153 VIIWNAKTFELLKVL-----RGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWG-IEKSITKPFEESPLTTFFLRL  225 (942)
T ss_pred             EEEEccccceeeeee-----ecccccccceEECCc-cCeeeeecCCceEEEEEcccce-eeEeeccchhhCCCcceeeec
Confidence            999999887666555     579999999999974 6899999999999999865322 22223222      2236789


Q ss_pred             EEecCCCEEEEee----CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC-------------CC----EEEEE
Q 024451          145 KFFPDGNRFGTGS----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-------------GR----LLFAG  203 (267)
Q Consensus       145 ~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------~~----~l~~g  203 (267)
                      .|+|||.+|++.-    .-.++.|.+-.+-+....+..     +..++..+.|+|.             .+    ++|+|
T Consensus       226 SWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-----H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg  300 (942)
T KOG0973|consen  226 SWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-----HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG  300 (942)
T ss_pred             ccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec-----CCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence            9999999998763    234678877655443333332     3347899999872             11    67889


Q ss_pred             EeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          204 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       204 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      +.|+.|.||.....+++....   .-....|..++|+|||..|..||.||+|.+..|.
T Consensus       301 SqDrSlSVW~T~~~RPl~vi~---~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  301 SQDRSLSVWNTALPRPLFVIH---NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             cCCccEEEEecCCCCchhhhh---hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence            999999999987776655432   2345689999999999999999999999999873

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.8e-24  Score=162.89  Aligned_cols=235  Identities=19%  Similarity=0.340  Sum_probs=175.8

Q ss_pred             eeCCCCCeEEEccC--CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            4 AFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         4 ~~~~~g~~l~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +|......++.++.  |.+||.-++..+       +..|.+.||+..|.++..+|-+ ..++|++.|++|++||++....
T Consensus        63 ~Fth~~~~~i~sStk~d~tIryLsl~dN-------kylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~c  134 (311)
T KOG1446|consen   63 CFTHHSNTVIHSSTKEDDTIRYLSLHDN-------KYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKC  134 (311)
T ss_pred             EEecCCceEEEccCCCCCceEEEEeecC-------ceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCC
Confidence            45444444555554  889999988753       3789999999999999999976 4689999999999999997655


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc-ccceEEee---ccccceeEEEEecCCCEEEEee
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFH---GHEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~  157 (267)
                      ...+..       ..-...+++| .+-+++++.....|++||+|.. ..+...+.   +.....+.+.|+|+|++++.+.
T Consensus       135 qg~l~~-------~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT  206 (311)
T KOG1446|consen  135 QGLLNL-------SGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST  206 (311)
T ss_pred             ceEEec-------CCCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe
Confidence            544421       1112344664 5667777766669999999854 22333332   3456788999999999999999


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  237 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  237 (267)
                      ..+.+.+.|--+|..+..+..+......  ....+|+|+++++++|+.||.|++|++++++.+..+.   ..+.+++.++
T Consensus       207 ~~s~~~~lDAf~G~~~~tfs~~~~~~~~--~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~---~~~~~~~~~~  281 (311)
T KOG1446|consen  207 NASFIYLLDAFDGTVKSTFSGYPNAGNL--PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR---GPNGGPVSCV  281 (311)
T ss_pred             CCCcEEEEEccCCcEeeeEeeccCCCCc--ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec---CCCCCCcccc
Confidence            9999999998888766655443332221  2567899999999999999999999999988776653   3378899999


Q ss_pred             EECCCCCeEEEeECCCcEEEEecC
Q 024451          238 GLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       238 ~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .|+|--.+++++  +..+.+|-..
T Consensus       282 ~fnP~~~mf~sa--~s~l~fw~p~  303 (311)
T KOG1446|consen  282 RFNPRYAMFVSA--SSNLVFWLPD  303 (311)
T ss_pred             ccCCceeeeeec--CceEEEEecc
Confidence            999976666655  6789999543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=3.1e-25  Score=184.82  Aligned_cols=232  Identities=21%  Similarity=0.361  Sum_probs=186.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++++.+...+++|+. +++++|+...       ..+.+++..  +.+.++.|.| ++.++++|...|.+.++|+.+...
T Consensus       378 sl~vS~d~~~~~Sga~-~SikiWn~~t-------~kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l  446 (888)
T KOG0306|consen  378 SLCVSSDSILLASGAG-ESIKIWNRDT-------LKCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLASASL  446 (888)
T ss_pred             EEEeecCceeeeecCC-CcEEEEEccC-------cceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEeehhhh
Confidence            4678888887777654 5799999864       236666543  3888999999 567999999999999999987655


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc-------cce-----EEeeccccceeEEEEecC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-------RAV-----RTFHGHEGDVNTVKFFPD  149 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-------~~~-----~~~~~~~~~i~~~~~~~~  149 (267)
                      ...+     .+|++.|.+++..|. +..+++|+.|.+|++||.....       +.+     +.+ .-...|.|+.++||
T Consensus       447 ~Eti-----~AHdgaIWsi~~~pD-~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spd  519 (888)
T KOG0306|consen  447 VETI-----RAHDGAIWSISLSPD-NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPD  519 (888)
T ss_pred             hhhh-----hccccceeeeeecCC-CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCC
Confidence            4433     479999999999875 5678999999999999864211       111     111 23467899999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCC
Q 024451          150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS  229 (267)
Q Consensus       150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~  229 (267)
                      +++++.+--|.+++||-+++-+-...+     .++.-+|.++..||++..+++|+.|..|++|-+.-+....++    ..
T Consensus       520 gk~LaVsLLdnTVkVyflDtlKFflsL-----YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~----fA  590 (888)
T KOG0306|consen  520 GKLLAVSLLDNTVKVYFLDTLKFFLSL-----YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF----FA  590 (888)
T ss_pred             CcEEEEEeccCeEEEEEecceeeeeee-----cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh----hc
Confidence            999999999999999999876543333     345568999999999999999999999999998877766554    47


Q ss_pred             ccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          230 HEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      |.+.|.++.|-|....+.++|.|+.|+-||-
T Consensus       591 HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg  621 (888)
T KOG0306|consen  591 HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG  621 (888)
T ss_pred             ccCceeEEEEcccceeEEEecCcceEEeech
Confidence            9999999999999999999999999999973

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.1e-24  Score=185.06  Aligned_cols=243  Identities=19%  Similarity=0.339  Sum_probs=187.8

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .++|.|+|..|.+++.||.|++|+.....+.    |  +++..|...|.+++-..   .++++|+.+++|.+|.+.++..
T Consensus        18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~----P--~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~   88 (933)
T KOG1274|consen   18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEE----P--ETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGEE   88 (933)
T ss_pred             EEEEcCCCCEEEEecCCCceEEeecCCcccC----C--chhhccCceeEEEeecc---cceEEeeccceEEEeeCCCCCc
Confidence            3689999999999999999999997654211    1  22223777888877533   4799999999999999987654


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      -.++.     .-.-++..++++. ++.+++.|+.|-.|++-+... ....+.+.+|.++|.++.|+|.+++||+.+-||+
T Consensus        89 ~~iL~-----Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D-~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~  161 (933)
T KOG1274|consen   89 DTILA-----RFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDD-SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK  161 (933)
T ss_pred             cceee-----eeeccceEEEEec-CCcEEEeecCceeEEEEeccc-cchheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence            32221     2234577788875 567889999999999999865 3457788999999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCC---CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENE---IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      |++||+.++.....+......++   ...+..++|+|++..+++-..|+.|.+|+.........+.  ...+...+..+.
T Consensus       162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr--~~~~ss~~~~~~  239 (933)
T KOG1274|consen  162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR--DKLSSSKFSDLQ  239 (933)
T ss_pred             EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec--ccccccceEEEE
Confidence            99999998765443322211111   2346788999998888888899999999987776554442  234555599999


Q ss_pred             ECCCCCeEEEeECCCcEEEEecCc
Q 024451          239 LSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       239 ~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      |+|+|+|||+++.||.|.||+...
T Consensus       240 wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  240 WSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EcCCCcEEeeeccCCcEEEEeccc
Confidence            999999999999999999999764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=166.03  Aligned_cols=208  Identities=24%  Similarity=0.374  Sum_probs=169.1

Q ss_pred             ccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeE
Q 024451           40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA  119 (267)
Q Consensus        40 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i  119 (267)
                      +.+++|...|.+++|+-++ ..|++|+.|+++++|+++........   ...+|.+.+..++++|.+..++++++.|.+|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~~~---~~~gh~~svdql~w~~~~~d~~atas~dk~i   89 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRKEL---VYRGHTDSVDQLCWDPKHPDLFATASGDKTI   89 (313)
T ss_pred             HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhhhhhh---cccCCCcchhhheeCCCCCcceEEecCCceE
Confidence            6678999999999999875 57999999999999999866332222   2357999999999999999999999999999


Q ss_pred             EEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451          120 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  199 (267)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  199 (267)
                      ++||.+..+ +...... .+.=.-+.|+|+|++++.+..|..|.+.|.++.+......      ....+.-++|+-++.+
T Consensus        90 r~wd~r~~k-~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~------~~~e~ne~~w~~~nd~  161 (313)
T KOG1407|consen   90 RIWDIRSGK-CTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ------FKFEVNEISWNNSNDL  161 (313)
T ss_pred             EEEEeccCc-EEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc------ccceeeeeeecCCCCE
Confidence            999998654 4444432 3333568899999999999999999999998766543221      1234678889988888


Q ss_pred             EEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          200 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       200 l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      ++.....|.|.|......+.+..+    +.|.....|++|+|+|+|||+||.|-.+.|||+..+
T Consensus       162 Fflt~GlG~v~ILsypsLkpv~si----~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL  221 (313)
T KOG1407|consen  162 FFLTNGLGCVEILSYPSLKPVQSI----KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL  221 (313)
T ss_pred             EEEecCCceEEEEecccccccccc----ccCCcceEEEEECCCCceEeeccccceeeccChhHh
Confidence            888888899999987777766554    679999999999999999999999999999997543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.9e-25  Score=182.32  Aligned_cols=241  Identities=23%  Similarity=0.425  Sum_probs=184.6

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee--
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--   81 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--   81 (267)
                      ++..+|+.|++++.|-+|++|+.....     .-+..++..|+++|.|+++...+..++||||.|+.|.+||++++..  
T Consensus        80 iL~~~~~tlIS~SsDtTVK~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l  154 (735)
T KOG0308|consen   80 ILCGNGKTLISASSDTTVKVWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATL  154 (735)
T ss_pred             HhhcCCCceEEecCCceEEEeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhh
Confidence            445678899999999999999986532     2367788999999999999555567899999999999999997732  


Q ss_pred             EEEeC----CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451           82 TSVFG----GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus        82 ~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  157 (267)
                      ...+.    .....++...|.+++.++ ++.++++|+..+.+++||.++. +.+..++||...|..+..+++|..+++++
T Consensus       155 ~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~-~kimkLrGHTdNVr~ll~~dDGt~~ls~s  232 (735)
T KOG0308|consen  155 VASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTC-KKIMKLRGHTDNVRVLLVNDDGTRLLSAS  232 (735)
T ss_pred             hhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccc-cceeeeeccccceEEEEEcCCCCeEeecC
Confidence            11111    112237888999998875 4578999999999999999864 45667889999999999999999999999


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  237 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  237 (267)
                      .||+|++||+...+++..+.. |.    ..+.++..+|+=..+.+|+.||.|+.=|++.......+    ..-+.+|..+
T Consensus       233 SDgtIrlWdLgqQrCl~T~~v-H~----e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli----ck~daPv~~l  303 (735)
T KOG0308|consen  233 SDGTIRLWDLGQQRCLATYIV-HK----EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI----CKEDAPVLKL  303 (735)
T ss_pred             CCceEEeeeccccceeeeEEe-cc----CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe----ecCCCchhhh
Confidence            999999999998888776533 22    24899998999999999999999999998774322111    1123355555


Q ss_pred             EECCCCCeEEEeECCCcEEEEec
Q 024451          238 GLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       238 ~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ..+.+.+-+=+++.|+.|+=|..
T Consensus       304 ~~~~~~~~~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  304 HLHEHDNSVWVTTTDSSIKRWKL  326 (735)
T ss_pred             hhccccCCceeeeccccceecCC
Confidence            55533333344667888888864

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.4e-24  Score=163.68  Aligned_cols=247  Identities=17%  Similarity=0.311  Sum_probs=175.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccc--cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR--MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      +++|+.||+.|+|++.|++|++|++..-.+++-.  ++|  ...+|   -+.|.|.|+-...+++.-...++++|.+..+
T Consensus        91 ~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr--~~R~nve~dh---pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~  165 (420)
T KOG2096|consen   91 DVAFSSDGKKLATISGDRSIRLWDVRDFENKEHR--CIRQNVEYDH---PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKK  165 (420)
T ss_pred             eeEEcCCCceeEEEeCCceEEEEecchhhhhhhh--HhhccccCCC---ceEEEECCCcceEEEEEccCCEEEEEEeeec
Confidence            5789999999999999999999998764332221  112  12234   4567899988888888888889999987532


Q ss_pred             ee---EE-Ee---CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCE
Q 024451           80 LR---TS-VF---GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR  152 (267)
Q Consensus        80 ~~---~~-~~---~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  152 (267)
                      ..   .. ..   ..++...|+..+.++-.. .+..++++++.|..|.+|+++  .+.+..+......-+..+.+|+|++
T Consensus       166 ~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n~~aavSP~GRF  242 (420)
T KOG2096|consen  166 TDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK--GQLLQSIDTNQSSNYDAAVSPDGRF  242 (420)
T ss_pred             ccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC--CceeeeeccccccccceeeCCCCcE
Confidence            11   00 00   112334566666666554 467889999999999999997  3456666655566678899999999


Q ss_pred             EEEeeCCCcEEEEeCCCCe-----eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce-------e
Q 024451          153 FGTGSDDGTCRLFDIRTGH-----QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-------V  220 (267)
Q Consensus       153 l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~-------~  220 (267)
                      +++++----|++|.+--++     +....+  ...++...|.+++|+++...+++.+.||..++||......       +
T Consensus       243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf--~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~L  320 (420)
T KOG2096|consen  243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVF--SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKIL  320 (420)
T ss_pred             EEEecCCCCceEEEEEeccCcchhhhhhhh--eeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHh
Confidence            9999988889999964322     111111  1234556799999999999999999999999999632110       0


Q ss_pred             ee------------------------------------------cccccCCccceEEEEEECCCCCeEEEeECCCcEEEE
Q 024451          221 LN------------------------------------------LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW  258 (267)
Q Consensus       221 ~~------------------------------------------~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w  258 (267)
                      ..                                          ...+...|++.|.+++|+|+|+++|+++ |+.+++.
T Consensus       321 k~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~  399 (420)
T KOG2096|consen  321 KEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVI  399 (420)
T ss_pred             hcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeee
Confidence            00                                          0012234888999999999999999987 7888887


Q ss_pred             e
Q 024451          259 A  259 (267)
Q Consensus       259 ~  259 (267)
                      .
T Consensus       400 ~  400 (420)
T KOG2096|consen  400 R  400 (420)
T ss_pred             c
Confidence            4

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=1.1e-24  Score=180.02  Aligned_cols=222  Identities=26%  Similarity=0.423  Sum_probs=174.8

Q ss_pred             eeC-CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            4 AFS-PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         4 ~~~-~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      +|. .++-.|++|++|.++.+|.+....       +..+++||+..|-|++...++  .++|||+|.++++|-...... 
T Consensus        65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~-------P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~~-  134 (745)
T KOG0301|consen   65 CYAESDKGRLVVGGMDTTIIVFKLSQAE-------PLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELVY-  134 (745)
T ss_pred             eeccccCcceEeecccceEEEEecCCCC-------chhhhhccccceeeeecCCcC--ceEecccccceEEecchhhhc-
Confidence            444 355569999999999999986543       567899999999998876543  489999999999998753221 


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  162 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  162 (267)
                            ...+|+..|..+...+.+  .++||+.|++||+|.-   .+..+.+.+|++.|..+++-++ ..|++|+.||.|
T Consensus       135 ------~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~I  202 (745)
T KOG0301|consen  135 ------SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSI  202 (745)
T ss_pred             ------ccCCcchheeeeeecCCC--cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecC-CCeEeecCCceE
Confidence                  136899999999888653  7899999999999964   4578889999999999999875 469999999999


Q ss_pred             EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccc-eEEEEEECC
Q 024451          163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG-RITCLGLSA  241 (267)
Q Consensus       163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~p  241 (267)
                      ++|++ ++..+.....     +...+.+++...++..++++++|+.++||+..  +....+     .|.. .|+++++-+
T Consensus       203 r~w~~-~ge~l~~~~g-----htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I-----~lPttsiWsa~~L~  269 (745)
T KOG0301|consen  203 RLWDL-DGEVLLEMHG-----HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI-----TLPTTSIWSAKVLL  269 (745)
T ss_pred             EEEec-cCceeeeeec-----cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE-----ecCccceEEEEEee
Confidence            99999 4555544322     33468888888899999999999999999965  333322     2332 689999998


Q ss_pred             CCCeEEEeECCCcEEEEecC
Q 024451          242 DGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~~  261 (267)
                      +|.+ ++|+.||.||||...
T Consensus       270 NgDI-vvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  270 NGDI-VVGGSDGRVRVFTVD  288 (745)
T ss_pred             CCCE-EEeccCceEEEEEec
Confidence            8876 557789999999743

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.94  E-value=1.1e-24  Score=178.69  Aligned_cols=254  Identities=21%  Similarity=0.306  Sum_probs=179.6

Q ss_pred             ceeeCC---CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451            2 TCAFSP---TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         2 ~~~~~~---~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      ++.|++   ....|+.+.+||.|.++|........ +.........|.+.|+.+.|.| ++..|++++.|.+++.||+.+
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~-ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL-EERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcch-hhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence            345653   33678899999999999986532110 0111244568999999999999 677899999999999999987


Q ss_pred             CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-------------------c-------eE
Q 024451           79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-------------------A-------VR  132 (267)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-------------------~-------~~  132 (267)
                      ......   ....+|...+.+++|.+.+...|++|+.||.|.|||++....                   +       +.
T Consensus       132 s~l~G~---~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~  208 (720)
T KOG0321|consen  132 SRLVGG---RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR  208 (720)
T ss_pred             ceeecc---eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence            654332   234589999999999999999999999999999999874320                   0       11


Q ss_pred             EeeccccceeE---EEEecCCCEEEEeeC-CCcEEEEeCCCCeeeEEEEe------ecCCCCCCcEEEEEEccCCCEEEE
Q 024451          133 TFHGHEGDVNT---VKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQ------QHGENEIPHVTSIAFSISGRLLFA  202 (267)
Q Consensus       133 ~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~  202 (267)
                      .-+++...|.+   +.+..|...||++|. |+.|+|||++..+..-....      .......-.+.+++.+..|.+|++
T Consensus       209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A  288 (720)
T KOG0321|consen  209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA  288 (720)
T ss_pred             ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence            12344555666   777788999999987 99999999997653311100      000111234678888888999999


Q ss_pred             EEeCCeEEEEeCCccceeeecccccCCc--cceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          203 GYSNGDCYVWDTLLAKVVLNLGSLQNSH--EGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       203 g~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .+.|+.|++|++.....-.....  ..+  ..--..-..+|++.+|++|+.|....+|.+..
T Consensus       289 sCtD~sIy~ynm~s~s~sP~~~~--sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~  348 (720)
T KOG0321|consen  289 SCTDNSIYFYNMRSLSISPVAEF--SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS  348 (720)
T ss_pred             EecCCcEEEEeccccCcCchhhc--cCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence            99999999999865432111100  111  11122335689999999999999999998754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=2e-25  Score=178.62  Aligned_cols=237  Identities=23%  Similarity=0.407  Sum_probs=182.1

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS   83 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~   83 (267)
                      ..+...+++.|||..+ |+|||+..+.+......+ .. ....++|.+|..+|++ +.|++|++-.++.|||+.......
T Consensus       426 tIS~~trhVyTgGkgc-VKVWdis~pg~k~PvsqL-dc-l~rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTpri  501 (705)
T KOG0639|consen  426 TISNPTRHVYTGGKGC-VKVWDISQPGNKSPVSQL-DC-LNRDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTPRI  501 (705)
T ss_pred             EecCCcceeEecCCCe-EEEeeccCCCCCCccccc-cc-cCcccceeeeEecCCC-ceEEeccccceeeeeeccCCCcch
Confidence            3567788999998765 999999876433211111 11 1245789999999976 578899999999999998764321


Q ss_pred             EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEE
Q 024451           84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR  163 (267)
Q Consensus        84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  163 (267)
                        ..+.. .....+..+++++ +.++..++..||.|.|||+.. ...++++++|.+.+.|+..+++|..|-+|+-|.+||
T Consensus       502 --kaelt-ssapaCyALa~sp-DakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvR  576 (705)
T KOG0639|consen  502 --KAELT-SSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVR  576 (705)
T ss_pred             --hhhcC-CcchhhhhhhcCC-ccceeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCCceeecCCCcccee
Confidence              11211 1223455677775 567888999999999999974 457899999999999999999999999999999999


Q ss_pred             EEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC
Q 024451          164 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  243 (267)
Q Consensus       164 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  243 (267)
                      -||++.+.++..    +..  ...|.++..+|++.+++.|-+++.+.+......+...     ...|++.|.++.|.+-|
T Consensus       577 cWDlregrqlqq----hdF--~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq-----lhlheScVLSlKFa~cG  645 (705)
T KOG0639|consen  577 CWDLREGRQLQQ----HDF--SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ-----LHLHESCVLSLKFAYCG  645 (705)
T ss_pred             ehhhhhhhhhhh----hhh--hhhheecccCCCccceeeecccCcEEEEecCCcccee-----ecccccEEEEEEecccC
Confidence            999998876532    221  2358899999999999999999999888754333221     13589999999999999


Q ss_pred             CeEEEeECCCcEEEEec
Q 024451          244 SALCTGSWDTNLKIWAF  260 (267)
Q Consensus       244 ~~l~sgs~dg~i~~w~~  260 (267)
                      +++++.+.|..+..|..
T Consensus       646 kwfvStGkDnlLnawrt  662 (705)
T KOG0639|consen  646 KWFVSTGKDNLLNAWRT  662 (705)
T ss_pred             ceeeecCchhhhhhccC
Confidence            99999999999999963

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.1e-25  Score=168.55  Aligned_cols=237  Identities=23%  Similarity=0.347  Sum_probs=184.6

Q ss_pred             CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC------CCC---
Q 024451            9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI------TTG---   79 (267)
Q Consensus         9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~------~~~---   79 (267)
                      -..+.+++.|.+.++|.++..       .+...+.||.+.|.|+.|++++ .++++++.|++-.||..      .+.   
T Consensus       160 qpi~gtASADhTA~iWs~Esg-------~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~  231 (481)
T KOG0300|consen  160 QPICGTASADHTARIWSLESG-------ACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAP  231 (481)
T ss_pred             CcceeecccccceeEEeeccc-------cceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCC
Confidence            357899999999999999763       3778899999999999999975 58899999999999962      110   


Q ss_pred             -----eeE--------E-------------EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE
Q 024451           80 -----LRT--------S-------------VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT  133 (267)
Q Consensus        80 -----~~~--------~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~  133 (267)
                           +..        .             ..+.....+|...+.+..|.. +++.++++++|.+..+||++. ..++..
T Consensus       232 ~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEt-ge~v~~  309 (481)
T KOG0300|consen  232 SDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVET-GEVVNI  309 (481)
T ss_pred             CCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccceeeeecc-Cceecc
Confidence                 000        0             000011246777787777774 466789999999999999985 457888


Q ss_pred             eeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEe
Q 024451          134 FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  213 (267)
Q Consensus       134 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d  213 (267)
                      +.+|....+-+.-+|..+++++.+.|.+.++||++..-.....++.|    ...|+++.|..+ ..+++|+.|..|++||
T Consensus       310 LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGH----tdtVTS~vF~~d-d~vVSgSDDrTvKvWd  384 (481)
T KOG0300|consen  310 LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGH----TDTVTSVVFNTD-DRVVSGSDDRTVKVWD  384 (481)
T ss_pred             ccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccc----ccceeEEEEecC-CceeecCCCceEEEee
Confidence            99999999999999999999999999999999998654434444433    346999999865 5678999999999999


Q ss_pred             CCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          214 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      ++.-+.+....    ...++++-++++..+.++|.--.+..|++||++|-+
T Consensus       385 LrNMRsplATI----RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R  431 (481)
T KOG0300|consen  385 LRNMRSPLATI----RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR  431 (481)
T ss_pred             eccccCcceee----ecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence            87655433221    235688999999988899998888899999997743

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=7e-24  Score=160.26  Aligned_cols=251  Identities=16%  Similarity=0.252  Sum_probs=179.1

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEe-cCCCeeEEEeeCCCeEEEEeCCCC-
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV-PDEDTHLITSSGDQTCVLWDITTG-   79 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~d~~v~iwd~~~~-   79 (267)
                      +..|.+-|+++++++.|.+++|||...+   .+...+....+.|.+.|..+.|. |.=++.+|+++.|++++||.-... 
T Consensus        18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~---s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~   94 (361)
T KOG2445|consen   18 DVSFDFYGRRMATCSSDQTVKIWDSTSD---SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS   94 (361)
T ss_pred             eeeecccCceeeeccCCCcEEEEeccCC---CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence            4568899999999999999999997543   34566777889999999999996 444678999999999999975211 


Q ss_pred             ----eeEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCccc-----ceEEee-------cccccee
Q 024451           80 ----LRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASR-----AVRTFH-------GHEGDVN  142 (267)
Q Consensus        80 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~-----~~~~~~-------~~~~~i~  142 (267)
                          .+..... .........+..+.|.|.. +-++++++.||.+|||+......     ....++       .+..+..
T Consensus        95 ~~~~~~~Wv~~-ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~  173 (361)
T KOG2445|consen   95 EEAHGRRWVRR-TTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCF  173 (361)
T ss_pred             cccccceeEEE-EEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcce
Confidence                0000000 1123456778999998764 45678999999999998653211     111111       3556788


Q ss_pred             EEEEecC---CCEEEEeeCC-----CcEEEEeCCCCe-eeEEEEeecCCCCCCcEEEEEEccCC----CEEEEEEeCCeE
Q 024451          143 TVKFFPD---GNRFGTGSDD-----GTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISG----RLLFAGYSNGDC  209 (267)
Q Consensus       143 ~~~~~~~---~~~l~~~~~d-----~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~g~~dg~i  209 (267)
                      |+.|+|.   ..+||.|+.+     +.+.||....+. .-...  .....+..+|..++|+|+-    ..||+++.|| |
T Consensus       174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv--a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v  250 (361)
T KOG2445|consen  174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV--AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-V  250 (361)
T ss_pred             EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee--hhcCCCCCcceeeeeccccCCceeeEEEeecCc-E
Confidence            9999874   4578887765     478899865443 11111  1223455689999999973    4789999999 9


Q ss_pred             EEEeCCccc-----------------eeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          210 YVWDTLLAK-----------------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       210 ~i~d~~~~~-----------------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      +||.+....                 .+..+ .....|++.|+.+.|+-.|..|++.+.||.||+|..
T Consensus       251 ~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~v-s~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  251 RIFKVKVARSAIEEEEVLAPDLMTDLPVEKV-SELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             EEEEEeeccchhhhhcccCCCCccccceEEe-eeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            999976311                 01111 112569999999999999999999999999999963

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.9e-25  Score=186.61  Aligned_cols=247  Identities=17%  Similarity=0.286  Sum_probs=179.6

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccc-ccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS-RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++.+++-..++.+|.. .+++|...+...... +... +.-..-...+..|.|..-.+++||+++..|.|.+||+....+
T Consensus        45 Is~nr~~~qiv~AGrs-~lklyai~~~~~~~~-~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r  122 (839)
T KOG0269|consen   45 ISVNRDINQIVVAGRS-LLKLYAINPNDFSEK-CNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR  122 (839)
T ss_pred             EeecCCcceeEEeccc-ceeeEeeCcccCCcc-eeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc
Confidence            4566788889998876 789998765432211 1111 111111233445778765567999999999999999976221


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDG  160 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~  160 (267)
                      ...+  ....-|+..+++++|++....++++|+.||+||.||++.. +....+.+....|..+.|+| .+++|+++.+.|
T Consensus       123 nk~l--~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG  199 (839)
T KOG0269|consen  123 NKLL--TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG  199 (839)
T ss_pred             chhh--hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-cccccccccchhhhceeeccCCCceEEEecCCc
Confidence            1111  1124699999999999988899999999999999999853 34555666667899999999 578999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      .+++||++....-...+    ..+.++|.++.|+|++.+||+|+.|+.++|||+...+.-... .  -....+|.+++|-
T Consensus       200 ~lqlWDlRqp~r~~~k~----~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~-t--InTiapv~rVkWR  272 (839)
T KOG0269|consen  200 YLQLWDLRQPDRCEKKL----TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH-T--INTIAPVGRVKWR  272 (839)
T ss_pred             eEEEeeccCchhHHHHh----hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee-E--Eeecceeeeeeec
Confidence            99999998754332222    234468999999999999999999999999998754432110 1  1234689999999


Q ss_pred             CCCC-eEEEeEC--CCcEEEEecC
Q 024451          241 ADGS-ALCTGSW--DTNLKIWAFG  261 (267)
Q Consensus       241 p~~~-~l~sgs~--dg~i~~w~~~  261 (267)
                      |... +||+++.  |-.|.|||+.
T Consensus       273 P~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  273 PARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             cCccchhhhhhccccceEEEEeec
Confidence            9765 5777665  8889999964

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.8e-23  Score=165.65  Aligned_cols=245  Identities=18%  Similarity=0.337  Sum_probs=184.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++.|+|....|+++|.|+++++|.++...+     +....+.--+.+|.++.|.|++...+++++....+..||+.+.+.
T Consensus       218 sv~FHp~~plllvaG~d~~lrifqvDGk~N-----~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  218 SVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-----PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             EEEecCCCceEEEecCCCcEEEEEecCccC-----hhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            578999999999999999999999976443     233444445688999999999887899999999999999987653


Q ss_pred             EEEeCCccccCC-ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           82 TSVFGGEFQSGH-TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        82 ~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ...-.   ..++ +..+....+++ .+++++..|..|.|.+.-..+ ...+..++ -++.|..+.|+.+++.+++++.+|
T Consensus       293 ~k~~~---~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT-~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~G  366 (514)
T KOG2055|consen  293 TKLKP---PYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKT-KELITSFK-IEGVVSDFTFSSDSKELLASGGTG  366 (514)
T ss_pred             ccccC---CCCcccchhheeEecC-CCCeEEEcccCceEEeehhhh-hhhhheee-eccEEeeEEEecCCcEEEEEcCCc
Confidence            33211   1223 23455666775 456889999999999987653 34555554 357799999999999999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc------cceeeec-----------
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL------AKVVLNL-----------  223 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~------~~~~~~~-----------  223 (267)
                      .|.+||++...++..+......    .=+++|.|+++.++|+|+..|.|.|||...      ++++..+           
T Consensus       367 eV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~  442 (514)
T KOG2055|consen  367 EVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ  442 (514)
T ss_pred             eEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence            9999999988776665443221    247888899999999999999999999532      1111000           


Q ss_pred             ------------------------------ccccC--CccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          224 ------------------------------GSLQN--SHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       224 ------------------------------~~~~~--~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                                                    ..++.  .--+.|+|++|+|++.+||.|-.+|.+.+|.+.
T Consensus       443 Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  443 FNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence                                          00100  122468999999999999999999999999864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.3e-24  Score=169.97  Aligned_cols=228  Identities=19%  Similarity=0.299  Sum_probs=173.2

Q ss_pred             CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccc
Q 024451           17 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD   96 (267)
Q Consensus        17 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~   96 (267)
                      .-..+.+|.+..+..-.    ...   --.++|.|++-+|.+ .+|+.|+..+.|++|.+.+|....++     .+|-..
T Consensus        59 ~rp~l~vw~i~k~~~~~----q~~---v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ~  125 (476)
T KOG0646|consen   59 KRPLLHVWEILKKDQVV----QYI---VLPGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILLNVL-----SAHYQS  125 (476)
T ss_pred             cCccccccccCchhhhh----hhc---ccccceeeeecCCCc-eEEEeecccCcEEEEEeccccHHHHH-----Hhhccc
Confidence            34466777765432110    011   124678999988865 57777779999999999999876655     467788


Q ss_pred             eEEEEEeCCCCeEEEEecCCCeEEEEeCCC--------cccceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEe
Q 024451           97 VLSVSISGSNSRMFVSGSCDSTARLWDTRV--------ASRAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFD  166 (267)
Q Consensus        97 i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~--------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd  166 (267)
                      |+++.|+. ++.+|+||+.||.|.+|++-.        ..++...+..|.-+|+.+...+.  ...++++|.|.++|+||
T Consensus       126 ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd  204 (476)
T KOG0646|consen  126 ITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD  204 (476)
T ss_pred             eeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence            99999985 677899999999999997521        23467788899999999887654  46899999999999999


Q ss_pred             CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee-----------ee-cccccCCccc--
Q 024451          167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV-----------LN-LGSLQNSHEG--  232 (267)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~-----------~~-~~~~~~~~~~--  232 (267)
                      +..+..+..+...      ..+.+++.+|.++.+.+|+++|.|.+.++......           .+ ......+|..  
T Consensus       205 lS~g~LLlti~fp------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~  278 (476)
T KOG0646|consen  205 LSLGVLLLTITFP------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES  278 (476)
T ss_pred             eccceeeEEEecC------CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence            9998776554322      25899999999999999999999999886432200           00 0011235666  


Q ss_pred             eEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          233 RITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      +|+|++++-||..|++|+.||.+.||++..+|
T Consensus       279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             ceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence            99999999999999999999999999987665

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=2.4e-24  Score=166.70  Aligned_cols=244  Identities=21%  Similarity=0.306  Sum_probs=180.0

Q ss_pred             CCCeEEEccCCCeEEEeecCCCC---------CCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPT---------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~---------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      +..+.++=+..|.|.||++....         .+........++.+|++.=+.+.|+|-....|+||..-+.|++|...+
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~  243 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST  243 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence            45667777889999999986531         112233456678899999999999997666788888889999999887


Q ss_pred             CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc-cceEEeeccccceeEEEEecCCCEEEEee
Q 024451           79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  157 (267)
                      +.-.  +...-..+|+..|-.+.|+|....+|++|+.||+|+|||+|... +.....++|++.|+-+.|+..-.+||+|+
T Consensus       244 g~W~--vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~  321 (440)
T KOG0302|consen  244 GSWK--VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGG  321 (440)
T ss_pred             Ccee--ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecC
Confidence            5321  22222346999999999999999999999999999999998652 33445589999999999999878999999


Q ss_pred             CCCcEEEEeCCCCe---eeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccce--------eeec--
Q 024451          158 DDGTCRLFDIRTGH---QLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKV--------VLNL--  223 (267)
Q Consensus       158 ~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~--------~~~~--  223 (267)
                      .||+++|||++.-+   .+..+ +.    +..+|+++.|+|.. ..|++++.|.+|.+||+...+-        ...+  
T Consensus       322 DdGt~~iwDLR~~~~~~pVA~f-k~----Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~d  396 (440)
T KOG0302|consen  322 DDGTLSIWDLRQFKSGQPVATF-KY----HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQD  396 (440)
T ss_pred             CCceEEEEEhhhccCCCcceeE-Ee----ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhc
Confidence            99999999998643   22333 22    23579999999875 5778888999999999743221        0000  


Q ss_pred             --ccccCCc--cceEEEEEECCC-CCeEEEeECCCcEEEE
Q 024451          224 --GSLQNSH--EGRITCLGLSAD-GSALCTGSWDTNLKIW  258 (267)
Q Consensus       224 --~~~~~~~--~~~v~~~~~~p~-~~~l~sgs~dg~i~~w  258 (267)
                        ..+...|  ...+..+.|++. ..+|++.+.||--.+.
T Consensus       397 lPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk  436 (440)
T KOG0302|consen  397 LPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK  436 (440)
T ss_pred             CCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence              0011224  346788999975 4477888888754433

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=2.7e-24  Score=177.76  Aligned_cols=225  Identities=22%  Similarity=0.425  Sum_probs=178.2

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEE-EEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeC
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC-CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG   86 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~   86 (267)
                      ++..++++|.||++++|+-....     .-....+.+|.+.|.+ +.+.+.+...+++|+.|.++.+|...+..+..++ 
T Consensus        24 ~~~~i~s~sRd~t~~vw~~~~~~-----~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-   97 (745)
T KOG0301|consen   24 DGVCIISGSRDGTVKVWAKKGKQ-----YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL-   97 (745)
T ss_pred             CCeEEeecCCCCceeeeeccCcc-----cccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhh-
Confidence            45579999999999999854321     1122456788888877 8887655556999999999999999887766555 


Q ss_pred             CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451           87 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  166 (267)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  166 (267)
                          .+|+..|.++.....  ..+++|++|.++++|-..   .....+++|+..|..+.+-|.+ .++|||.|++|++|.
T Consensus        98 ----kgH~snVC~ls~~~~--~~~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk  167 (745)
T KOG0301|consen   98 ----KGHKSNVCSLSIGED--GTLISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWK  167 (745)
T ss_pred             ----hccccceeeeecCCc--CceEecccccceEEecch---hhhcccCCcchheeeeeecCCC-cEEeccCcceeeecc
Confidence                589999999987643  237999999999999653   3556689999999999999987 899999999999997


Q ss_pred             CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeE
Q 024451          167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL  246 (267)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  246 (267)
                      -  ++.+..+..     +...|..+++-+++ .++++++||.|++|++ .++.+..+    .+|..-|.+++..+++..+
T Consensus       168 ~--~~~l~tf~g-----HtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~----~ghtn~vYsis~~~~~~~I  234 (745)
T KOG0301|consen  168 G--GTLLKTFSG-----HTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM----HGHTNFVYSISMALSDGLI  234 (745)
T ss_pred             C--Cchhhhhcc-----chhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee----eccceEEEEEEecCCCCeE
Confidence            5  344444432     34579999987664 4666779999999998 56666555    4788999999988889999


Q ss_pred             EEeECCCcEEEEecC
Q 024451          247 CTGSWDTNLKIWAFG  261 (267)
Q Consensus       247 ~sgs~dg~i~~w~~~  261 (267)
                      +|++.|++++||+.+
T Consensus       235 vs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  235 VSTGEDRTLRIWKKD  249 (745)
T ss_pred             EEecCCceEEEeecC
Confidence            999999999999854

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=8.9e-25  Score=174.95  Aligned_cols=234  Identities=20%  Similarity=0.378  Sum_probs=186.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +|.+.|||+.|++||+-.++.|||+..++..     +...+....-..++++.+|+. ...+++..||.|.|||+.++..
T Consensus       470 SckL~pdgrtLivGGeastlsiWDLAapTpr-----ikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~  543 (705)
T KOG0639|consen  470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPR-----IKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTL  543 (705)
T ss_pred             eeEecCCCceEEeccccceeeeeeccCCCcc-----hhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEccccee
Confidence            5889999999999999999999999876522     112222333456778899975 5788999999999999998877


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      +..|     ++|.+-..|+.++... ..+=||+-|.+||-||++...+.. +. .....|.++..+|++..++.|-+.+.
T Consensus       544 Vrqf-----qGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlq-qh-dF~SQIfSLg~cP~~dWlavGMens~  615 (705)
T KOG0639|consen  544 VRQF-----QGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQ-QH-DFSSQIFSLGYCPTGDWLAVGMENSN  615 (705)
T ss_pred             eecc-----cCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhh-hh-hhhhhheecccCCCccceeeecccCc
Confidence            7666     5799999999998654 456799999999999998544322 11 13467999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      +.+-.....+..+..      .+..+|.++.|++.|+++++.+.|.-+..|...-+..++..     .-.+.|.++.+|.
T Consensus       616 vevlh~skp~kyqlh------lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs-----kE~SsVlsCDIS~  684 (705)
T KOG0639|consen  616 VEVLHTSKPEKYQLH------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISF  684 (705)
T ss_pred             EEEEecCCccceeec------ccccEEEEEEecccCceeeecCchhhhhhccCccccceeec-----cccCcceeeeecc
Confidence            999887654332221      12357999999999999999999999999997766665543     3456899999999


Q ss_pred             CCCeEEEeECCCcEEEEec
Q 024451          242 DGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~  260 (267)
                      |.+|+++||.|+...+|.+
T Consensus       685 ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  685 DDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             CceEEEecCCCcceEEEEE
Confidence            9999999999999999864

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=1.7e-23  Score=161.34  Aligned_cols=206  Identities=20%  Similarity=0.342  Sum_probs=170.7

Q ss_pred             cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451           39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  118 (267)
Q Consensus        39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~  118 (267)
                      ..++..|+.+|++|+.+| +.++++||+.|..-.+|++.++.....+     .+|++.|.++.|+. ++.+++||+.+|.
T Consensus        57 ~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~el-----tgHKDSVt~~~Fsh-dgtlLATGdmsG~  129 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGEL-----TGHKDSVTCCSFSH-DGTLLATGDMSGK  129 (399)
T ss_pred             eeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEe-----cCCCCceEEEEEcc-CceEEEecCCCcc
Confidence            346889999999999999 5679999999999999999998755443     58999999999996 5678999999999


Q ss_pred             EEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC
Q 024451          119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR  198 (267)
Q Consensus       119 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  198 (267)
                      |+||+.... .....+......+.-+.|||.+..|+.|+.||.+.+|.+.++...+.+..     +..++++-+|.|+|+
T Consensus       130 v~v~~~stg-~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G-----h~~~ct~G~f~pdGK  203 (399)
T KOG0296|consen  130 VLVFKVSTG-GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG-----HNSPCTCGEFIPDGK  203 (399)
T ss_pred             EEEEEcccC-ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC-----CCCCcccccccCCCc
Confidence            999998643 34444544567788899999999999999999999999987655454433     334688899999999


Q ss_pred             EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          199 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       199 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      .+++|+.||.|++||+.+..++..+...   -..+..+++++.++..+..|+.|+.+.+-.-
T Consensus       204 r~~tgy~dgti~~Wn~ktg~p~~~~~~~---e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~  262 (399)
T KOG0296|consen  204 RILTGYDDGTIIVWNPKTGQPLHKITQA---EGLELPCISLNLAGSTLTKGNSEGVACGVNN  262 (399)
T ss_pred             eEEEEecCceEEEEecCCCceeEEeccc---ccCcCCccccccccceeEeccCCccEEEEcc
Confidence            9999999999999999998877666432   2456788999999999999999998887653

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1e-23  Score=159.00  Aligned_cols=227  Identities=22%  Similarity=0.353  Sum_probs=170.2

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC-CeeEEEeeCCCeEEEEeCCCC
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      ++++|+.||..+++|+.|+++++||+....        ...+..|.++|.+|.|.+.. .+.|++||+|++||.||.++.
T Consensus        76 L~v~WsddgskVf~g~~Dk~~k~wDL~S~Q--------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~  147 (347)
T KOG0647|consen   76 LDVCWSDDGSKVFSGGCDKQAKLWDLASGQ--------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS  147 (347)
T ss_pred             EEEEEccCCceEEeeccCCceEEEEccCCC--------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence            578999999999999999999999998632        34567899999999998743 247899999999999999987


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCEEEEeeC
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSD  158 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~  158 (267)
                      ..+..+.      --+++.+.++-   ..+++.+..+..|.+++++......+... .-+-.+.|++..++.+..+.|+.
T Consensus       148 ~pv~t~~------LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi  218 (347)
T KOG0647|consen  148 NPVATLQ------LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI  218 (347)
T ss_pred             Ceeeeee------ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee
Confidence            6655542      12345555443   24778888899999999864322111111 11234789999999888899999


Q ss_pred             CCcEEEEeCCCCeeeEEE-EeecCC----C-CCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccc
Q 024451          159 DGTCRLFDIRTGHQLQVY-YQQHGE----N-EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG  232 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~-~~~~~~----~-~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  232 (267)
                      .|.+-|..+..+.....+ ++-|..    . ....|.+++|+|.-..|++.++||.+.+||-.....+...    ..|..
T Consensus       219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s----~~~~q  294 (347)
T KOG0647|consen  219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS----ETHPQ  294 (347)
T ss_pred             cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc----CcCCC
Confidence            999999999876333222 222321    1 1345889999999999999999999999997655544433    46889


Q ss_pred             eEEEEEECCCCCeEEE
Q 024451          233 RITCLGLSADGSALCT  248 (267)
Q Consensus       233 ~v~~~~~~p~~~~l~s  248 (267)
                      +|+|.+|+.+|.++|=
T Consensus       295 pItcc~fn~~G~ifaY  310 (347)
T KOG0647|consen  295 PITCCSFNRNGSIFAY  310 (347)
T ss_pred             ccceeEecCCCCEEEE
Confidence            9999999999998873

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.6e-23  Score=158.29  Aligned_cols=228  Identities=24%  Similarity=0.379  Sum_probs=169.6

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      ++|+|.+ ...+++|+.||.|+++|+....        ...+..|..+|.|+.+.+.. ..+++||+|++|++||.....
T Consensus        58 L~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--------~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~  127 (323)
T KOG1036|consen   58 LDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--------EDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKV  127 (323)
T ss_pred             eeeeccC-CceEEEeccCceEEEEEecCCc--------ceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccc
Confidence            5788987 4569999999999999997632        23355699999999999854 579999999999999998643


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE-eeccccceeEEEEecCCCEEEEeeCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDD  159 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d  159 (267)
                      ....+      .....|.++...   +..|+.|+.|..+.+||++........ -..-+-.+.|+++.|++.-+++++-|
T Consensus       128 ~~~~~------d~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie  198 (323)
T KOG1036|consen  128 VVGTF------DQGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE  198 (323)
T ss_pred             ccccc------ccCceEEEEecc---CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeec
Confidence            33322      233478887764   346788999999999999854433311 11224568999999988889999999


Q ss_pred             CcEEEEeCCCCee---eEEEEeecCCCC-----CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCcc
Q 024451          160 GTCRLFDIRTGHQ---LQVYYQQHGENE-----IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE  231 (267)
Q Consensus       160 ~~i~iwd~~~~~~---~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~  231 (267)
                      |.|-+=.++....   ..-.+..|....     .-+|.+++|+|--..+++|++||.|.+||+...+.+.++..    .+
T Consensus       199 GRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~----~~  274 (323)
T KOG1036|consen  199 GRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK----YE  274 (323)
T ss_pred             ceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC----CC
Confidence            9988755554311   111122232221     23689999999999999999999999999988887766532    34


Q ss_pred             ceEEEEEECCCCCeEEEeEC
Q 024451          232 GRITCLGLSADGSALCTGSW  251 (267)
Q Consensus       232 ~~v~~~~~~p~~~~l~sgs~  251 (267)
                      ..|.+++|+-+|..||.++.
T Consensus       275 ~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  275 TSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CceEEEEeccCCCeEEEEec
Confidence            57999999999999999875

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=4.1e-24  Score=160.84  Aligned_cols=213  Identities=22%  Similarity=0.371  Sum_probs=167.1

Q ss_pred             cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe----------eEEEeCCccccCCccceEEEEEeCCCCeEE
Q 024451           41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL----------RTSVFGGEFQSGHTADVLSVSISGSNSRMF  110 (267)
Q Consensus        41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  110 (267)
                      ....|.+.|.++++.+.+++++++|+.||.|.+||++...          ..++...+...+|.-.|.++-|-|-+..+|
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            3457999999999999999999999999999999997532          122233344568899999999999888899


Q ss_pred             EEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCC---CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCc
Q 024451          111 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  187 (267)
Q Consensus       111 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  187 (267)
                      .+++.|.++++||..+.. ....++ .++.|.+-+++|-.   -++|+|..|-+|++.|+.++.....+     .++...
T Consensus       118 tssSFDhtlKVWDtnTlQ-~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L-----sGHr~~  190 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQ-EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL-----SGHRDG  190 (397)
T ss_pred             ecccccceEEEeecccce-eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee-----ccccCc
Confidence            999999999999987533 233333 45778888888843   36788889999999999998765443     344567


Q ss_pred             EEEEEEccCCCE-EEEEEeCCeEEEEeCCccc-eee----------ecccccCCccceEEEEEECCCCCeEEEeECCCcE
Q 024451          188 VTSIAFSISGRL-LFAGYSNGDCYVWDTLLAK-VVL----------NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL  255 (267)
Q Consensus       188 v~~~~~s~~~~~-l~~g~~dg~i~i~d~~~~~-~~~----------~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i  255 (267)
                      |.++.|+|...+ |++|+.||.+++||++..- ...          ........|.+.+..++|+.++.++++++.|..+
T Consensus       191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~  270 (397)
T KOG4283|consen  191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI  270 (397)
T ss_pred             eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence            999999999886 5778999999999986531 110          0001124689999999999999999999999999


Q ss_pred             EEEec
Q 024451          256 KIWAF  260 (267)
Q Consensus       256 ~~w~~  260 (267)
                      ++|..
T Consensus       271 r~wn~  275 (397)
T KOG4283|consen  271 RVWNM  275 (397)
T ss_pred             EEeec
Confidence            99975

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.5e-23  Score=159.10  Aligned_cols=248  Identities=21%  Similarity=0.287  Sum_probs=178.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ||.|++-|.+||.|+.||.|.+||..+..       ..+++.+|..+|.|+.|++++ +.|+|+|.|..|++||+..+..
T Consensus        28 ~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~   99 (405)
T KOG1273|consen   28 CCQFSRWGDYLAVGCANGRVVIYDFDTFR-------IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSP   99 (405)
T ss_pred             eEEeccCcceeeeeccCCcEEEEEccccc-------hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCc
Confidence            78999999999999999999999997632       677899999999999999976 6899999999999999998875


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc---ccceeEEEEecCCCEEEEeeC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH---EGDVNTVKFFPDGNRFGTGSD  158 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~  158 (267)
                      ...+.      -..+|....|+|...+.++..-.+..-.+-++.......-.....   +....+..|++.|+++++|..
T Consensus       100 l~rir------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts  173 (405)
T KOG1273|consen  100 LKRIR------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS  173 (405)
T ss_pred             eeEEE------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC
Confidence            55442      345788888888777777666555555555543211111111100   111234468899999999999


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccC-------Ccc
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN-------SHE  231 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~  231 (267)
                      .|.+.++|..+.++...+....    ...|..+.++..|++++.-++|+.|+.|+.+.--....-.....       ...
T Consensus       174 KGkllv~~a~t~e~vas~rits----~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk  249 (405)
T KOG1273|consen  174 KGKLLVYDAETLECVASFRITS----VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNK  249 (405)
T ss_pred             cceEEEEecchheeeeeeeech----heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhh
Confidence            9999999999887765544322    24588999999999999999999999999652110000000000       112


Q ss_pred             ceEEEEEECCCCCeEEEeEC-CCcEEEE--ecCceEecC
Q 024451          232 GRITCLGLSADGSALCTGSW-DTNLKIW--AFGGYRRVL  267 (267)
Q Consensus       232 ~~v~~~~~~p~~~~l~sgs~-dg~i~~w--~~~~~~~~~  267 (267)
                      -...+++|+-+|.|+..|+. -..+.||  .++.|.++|
T Consensus       250 ~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL  288 (405)
T KOG1273|consen  250 LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL  288 (405)
T ss_pred             hhhhheeecCCccEEEeccccceeEEEEecCCcceeeee
Confidence            34678999999999887664 4458999  456666654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.1e-23  Score=173.01  Aligned_cols=235  Identities=21%  Similarity=0.363  Sum_probs=180.2

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS   83 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~   83 (267)
                      .|+ ..+.|+.|. ...|.+|+.....       +.....-+...|+++.|++++ .+|+.|..+|.|.|||..+.....
T Consensus       184 dWs-s~n~laVal-g~~vylW~~~s~~-------v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~  253 (484)
T KOG0305|consen  184 DWS-SANVLAVAL-GQSVYLWSASSGS-------VTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTR  253 (484)
T ss_pred             hcc-cCCeEEEEe-cceEEEEecCCCc-------eEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccc
Confidence            355 344566554 3469999975421       222222337889999999976 589999999999999998876665


Q ss_pred             EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEE
Q 024451           84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR  163 (267)
Q Consensus        84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  163 (267)
                      .+.    ..|...|-+++|.   ...+.+|+.|+.|..+|++........+.+|...|..+.|+++++++|+|+.|+.+.
T Consensus       254 ~~~----~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~  326 (484)
T KOG0305|consen  254 TLR----GSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVF  326 (484)
T ss_pred             ccc----CCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceE
Confidence            543    1288999999996   457889999999999999876655555889999999999999999999999999999


Q ss_pred             EEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEE--EeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          164 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAG--YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       164 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      |||......+..+.+     +...|.+++|+|-. ..||+|  +.|+.|++||..+++.+...     .....|.+|.|+
T Consensus       327 Iwd~~~~~p~~~~~~-----H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-----dtgsQVcsL~Ws  396 (484)
T KOG0305|consen  327 IWDGLSPEPKFTFTE-----HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-----DTGSQVCSLIWS  396 (484)
T ss_pred             eccCCCccccEEEec-----cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-----ccCCceeeEEEc
Confidence            999966555444332     34579999999964 566775  47999999999888776554     345679999999


Q ss_pred             CCCCeEEE--eECCCcEEEEecCceEe
Q 024451          241 ADGSALCT--GSWDTNLKIWAFGGYRR  265 (267)
Q Consensus       241 p~~~~l~s--gs~dg~i~~w~~~~~~~  265 (267)
                      |..+.|++  |-.++.|.||++-.+.+
T Consensus       397 k~~kEi~sthG~s~n~i~lw~~ps~~~  423 (484)
T KOG0305|consen  397 KKYKELLSTHGYSENQITLWKYPSMKL  423 (484)
T ss_pred             CCCCEEEEecCCCCCcEEEEeccccce
Confidence            98876665  44477899999855443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.2e-23  Score=165.83  Aligned_cols=242  Identities=25%  Similarity=0.354  Sum_probs=178.1

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCC--------------CcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEE
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGN--------------LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL   73 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~i   73 (267)
                      .|+++|.|.+|..|.|||+.-.+.-...              .+......+|++.|-+++|+..-...|||||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            4689999999999999998753211000              01111245799999999998877789999999999999


Q ss_pred             EeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCE
Q 024451           74 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNR  152 (267)
Q Consensus        74 wd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  152 (267)
                      ||+.++.+..++.     .|.+.|.++.|++.....+++|+.|++|++.|.|.....-...+ -.+.|..+.|.|. ...
T Consensus       271 WD~~~g~p~~s~~-----~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~  344 (463)
T KOG0270|consen  271 WDVDTGKPKSSIT-----HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENS  344 (463)
T ss_pred             EEcCCCCcceehh-----hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCcee
Confidence            9999998777653     58899999999999999999999999999999985333222222 2467899999885 467


Q ss_pred             EEEeeCCCcEEEEeCCCCe-eeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecccccCCc
Q 024451          153 FGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  230 (267)
Q Consensus       153 l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~  230 (267)
                      ++++..||+++-+|+|... .+... +.|    ..+|+++++++.. .++++++.++.+++|+......-....+  .--
T Consensus       345 f~~~tddG~v~~~D~R~~~~~vwt~-~AH----d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~--~~~  417 (463)
T KOG0270|consen  345 FFVSTDDGTVYYFDIRNPGKPVWTL-KAH----DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH--SFK  417 (463)
T ss_pred             EEEecCCceEEeeecCCCCCceeEE-Eec----cCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc--ccc
Confidence            8888999999999999864 33332 222    3469999988764 4678899999999999754322110000  001


Q ss_pred             cceEEEEEECCCCC-eEEEeECCCcEEEEecCc
Q 024451          231 EGRITCLGLSADGS-ALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       231 ~~~v~~~~~~p~~~-~l~sgs~dg~i~~w~~~~  262 (267)
                      -+...|.++.|+-. +||.|+..+.++||++..
T Consensus       418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             ccceeecccCCCcceEEEecCccceEEEeeccc
Confidence            23477888888754 567788888999999743

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.4e-25  Score=186.23  Aligned_cols=228  Identities=24%  Similarity=0.450  Sum_probs=183.2

Q ss_pred             CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeC
Q 024451            7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG   86 (267)
Q Consensus         7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~   86 (267)
                      |.+..++..-.+-.+++|+..             .+-.|...|.|+..-. ..+.+++|+.|..+.+|.+.....+-.  
T Consensus         2 ~~~~~~m~~~~~t~Lr~~~~~-------------~~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S--   65 (825)
T KOG0267|consen    2 PGMEFLMKTKRATKLRVWDTR-------------EFVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITS--   65 (825)
T ss_pred             Ccccccceeeeeeccccccch-------------hhhhhhhhhceeeeec-cceeeccCCCceeeccccccCCchhhe--
Confidence            334444554445556667643             3446888888888744 446899999999999998865443322  


Q ss_pred             CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451           87 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  166 (267)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  166 (267)
                         ..+|+..|.++.++.. ..++++|+.+|+|++||+.. .+.++.+.+|...+.++.|+|.+.++++|+.|..+++||
T Consensus        66 ---~~~hespIeSl~f~~~-E~LlaagsasgtiK~wDlee-Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD  140 (825)
T KOG0267|consen   66 ---LTGHESPIESLTFDTS-ERLLAAGSASGTIKVWDLEE-AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWD  140 (825)
T ss_pred             ---eeccCCcceeeecCcc-hhhhcccccCCceeeeehhh-hhhhhhhhccccCcceeeeccceEEeccccccccceehh
Confidence               2579999999999864 56889999999999999974 456778889999999999999999999999999999999


Q ss_pred             CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeE
Q 024451          167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL  246 (267)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  246 (267)
                      ++...+...+..     +...+..+.|+|+|++++.|+.|..++|||...++....+    ..|++.+..+.|+|..-+|
T Consensus       141 ~Rk~Gc~~~~~s-----~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef----~~~e~~v~sle~hp~e~Ll  211 (825)
T KOG0267|consen  141 IRKKGCSHTYKS-----HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF----KSHEGKVQSLEFHPLEVLL  211 (825)
T ss_pred             hhccCceeeecC-----CcceeEEEeecCCCceeeccCCcceeeeeccccccccccc----ccccccccccccCchhhhh
Confidence            986555544322     3345788899999999999999999999999888877665    5699999999999999999


Q ss_pred             EEeECCCcEEEEecCceE
Q 024451          247 CTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       247 ~sgs~dg~i~~w~~~~~~  264 (267)
                      ++||.|+++++|++..|.
T Consensus       212 a~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  212 APGSSDRTVRFWDLETFE  229 (825)
T ss_pred             ccCCCCceeeeeccceeE
Confidence            999999999999986554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=4.4e-24  Score=162.68  Aligned_cols=246  Identities=24%  Similarity=0.362  Sum_probs=182.4

Q ss_pred             ceeeCC---C-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451            2 TCAFSP---T-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT   77 (267)
Q Consensus         2 ~~~~~~---~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~   77 (267)
                      +|+|+-   + ..+||.||.-|.|+|.|+...       .+...+.+|.+.|..+.+.|...+++++||.|.+||+||++
T Consensus        94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~~-------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG-------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             EEEEEecCCCCCeeEEeecceeEEEEEecchh-------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            566652   2 468999999999999998753       25667889999999999999988899999999999999999


Q ss_pred             CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc--------------cc-------------
Q 024451           78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--------------RA-------------  130 (267)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--------------~~-------------  130 (267)
                      +...+.++++.  .+|.+.|.+++|+... ..++++|.|-++++|++....              +.             
T Consensus       167 ~~~Cv~VfGG~--egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~  243 (385)
T KOG1034|consen  167 TDVCVAVFGGV--EGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD  243 (385)
T ss_pred             CCeEEEEeccc--ccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence            99999998765  5899999999999754 578999999999999986211              00             


Q ss_pred             eEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeC-CCCeeeEEE---------EeecC-CCCCCcEEEEEEccCCCE
Q 024451          131 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI-RTGHQLQVY---------YQQHG-ENEIPHVTSIAFSISGRL  199 (267)
Q Consensus       131 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~---------~~~~~-~~~~~~v~~~~~s~~~~~  199 (267)
                      ...-.-|...|.|+.|.  |+++++=+-++.|..|-. +-++.+...         ..+.. .+-..+-...+|++-++.
T Consensus       244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~  321 (385)
T KOG1034|consen  244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM  321 (385)
T ss_pred             ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence            00123466667777775  578888888899999987 222211111         11000 000112334567788999


Q ss_pred             EEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          200 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       200 l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      |+.|...|.+++||+...+...............|...+|+.||.+|+....|++|-=|+
T Consensus       322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            999999999999999877654322212223356799999999999999999999887775

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=7.4e-25  Score=167.01  Aligned_cols=209  Identities=24%  Similarity=0.368  Sum_probs=163.9

Q ss_pred             CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc---cccCCccceEEEEEeCCCCeEEEEecCCCeEE
Q 024451           44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE---FQSGHTADVLSVSISGSNSRMFVSGSCDSTAR  120 (267)
Q Consensus        44 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~  120 (267)
                      +.++.+-|..|+|++ ++|++|+-||-|.+||..+++...-+..+   ...-+...+.+++|+. +..++++|+.||.|+
T Consensus       211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIK  288 (508)
T ss_pred             ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEE
Confidence            667788999999975 79999999999999999888543322211   1134778899999985 567899999999999


Q ss_pred             EEeCCCcccceEEee-ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451          121 LWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  199 (267)
Q Consensus       121 iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  199 (267)
                      +|.++++. .++.+. +|...|+|+.|+.|+..+.+++.|.++|+--+++++++..+..     +...|....|+++|..
T Consensus       289 vWri~tG~-ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG-----HsSyvn~a~ft~dG~~  362 (508)
T KOG0275|consen  289 VWRIETGQ-CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG-----HSSYVNEATFTDDGHH  362 (508)
T ss_pred             EEEEecch-HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC-----ccccccceEEcCCCCe
Confidence            99998654 455554 8999999999999999999999999999999999998776543     3457899999999999


Q ss_pred             EEEEEeCCeEEEEeCCccceeeeccc------------cc-------------------------------CCccceEEE
Q 024451          200 LFAGYSNGDCYVWDTLLAKVVLNLGS------------LQ-------------------------------NSHEGRITC  236 (267)
Q Consensus       200 l~~g~~dg~i~i~d~~~~~~~~~~~~------------~~-------------------------------~~~~~~v~~  236 (267)
                      ++++++||.|++|+..+.+.+..+..            ++                               +.-.+...+
T Consensus       363 iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~  442 (508)
T KOG0275|consen  363 IISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFIN  442 (508)
T ss_pred             EEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEE
Confidence            99999999999999765442211100            00                               001234456


Q ss_pred             EEECCCCCeEEEeECCCcEEEEec
Q 024451          237 LGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       237 ~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      .+.+|.|+++.+.+.|+.+.-|.+
T Consensus       443 ~~lSpkGewiYcigED~vlYCF~~  466 (508)
T KOG0275|consen  443 AILSPKGEWIYCIGEDGVLYCFSV  466 (508)
T ss_pred             EEecCCCcEEEEEccCcEEEEEEe
Confidence            778999999999999998888754

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=7e-24  Score=169.60  Aligned_cols=221  Identities=19%  Similarity=0.284  Sum_probs=176.8

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      |++......++++||..+.|+|||+...       -+.+.+++|++-|+++.++-. +.+|++++..|.|.|..+.++.+
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-------l~hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~~  155 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRAK-------LIHRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQK  155 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHHH-------HHhhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCcc
Confidence            3444456689999999999999998742       267789999999999999875 46999999999999999998876


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDG  160 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~  160 (267)
                      .-.|..    +....+.-+.+++....++.+++.+|.|.+||+............|..++..++|+|. ...|++.+.|+
T Consensus       156 tt~f~~----~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dk  231 (673)
T KOG4378|consen  156 TTTFTI----DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDK  231 (673)
T ss_pred             ccceec----CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccc
Confidence            555431    2233456788998877888899999999999997544444455689999999999995 56789999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      +|.+||++.......+...      .+.+.++|+++|.+|++|...|.|+.||++..+.+....   ..|...|++++|-
T Consensus       232 ki~~yD~~s~~s~~~l~y~------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~---sah~~sVt~vafq  302 (673)
T KOG4378|consen  232 KINIYDIRSQASTDRLTYS------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR---SAHDASVTRVAFQ  302 (673)
T ss_pred             eEEEeecccccccceeeec------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe---eecccceeEEEee
Confidence            9999999876555444332      257899999999999999999999999998766654443   3588889999998


Q ss_pred             CCC
Q 024451          241 ADG  243 (267)
Q Consensus       241 p~~  243 (267)
                      |..
T Consensus       303 ~s~  305 (673)
T KOG4378|consen  303 PSP  305 (673)
T ss_pred             ecc
Confidence            754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=5.6e-24  Score=164.72  Aligned_cols=214  Identities=22%  Similarity=0.359  Sum_probs=159.4

Q ss_pred             ccCCeeeEEEEEEecCC-CeeEEEeeCCCeEEEEeCCCCeeEE-----------EeCCccccCCccceEEEEEeCCCCeE
Q 024451           42 LSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTS-----------VFGGEFQSGHTADVLSVSISGSNSRM  109 (267)
Q Consensus        42 ~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~  109 (267)
                      .-+|.+.+.-++..+.+ ..+.++-+..|.|+|||+.......           .-+.....+|...-..++|+|.....
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            34677777777766653 3456677888999999996421100           00001124677778899999866666


Q ss_pred             EEEecCCCeEEEEeCCCccc--ceEEeeccccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEEE-EeecCCCCC
Q 024451          110 FVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVY-YQQHGENEI  185 (267)
Q Consensus       110 ~~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~  185 (267)
                      +++|.+-+.|++|....+.-  ....+.+|+..|..+.|+|. ...|++||-|++|+|||+|.+.....+ .+.+    .
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh----~  302 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAH----N  302 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeecc----C
Confidence            88999999999998765321  23456689999999999995 568999999999999999998443332 2222    2


Q ss_pred             CcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC-CCeEEEeECCCcEEEEec
Q 024451          186 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-GSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       186 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~sgs~dg~i~~w~~  260 (267)
                      ..|..+.|+..-.+|++|+.||.++|||+++.+.-..+..+ +.|..+|+++.|+|. ...|++++.|..|.|||+
T Consensus       303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f-k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF-KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE-EeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence            46999999999889999999999999999876544333333 569999999999986 456788889999999997

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=1.2e-21  Score=157.67  Aligned_cols=242  Identities=16%  Similarity=0.180  Sum_probs=163.1

Q ss_pred             ceeeCCCCCeE-EEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l-~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      .++|+|+|+.+ ++++.++.+++||.....       ....+..+.. +..+.|+|++..++++++.|+.|++||+.+..
T Consensus        35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-------~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~  106 (300)
T TIGR03866        35 GITLSKDGKLLYVCASDSDTIQVIDLATGE-------VIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK  106 (300)
T ss_pred             ceEECCCCCEEEEEECCCCeEEEEECCCCc-------EEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence            47899999876 677889999999986421       2223333333 45678899876555566778999999998866


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEE-eeC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT-GSD  158 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~  158 (267)
                      ....+.      +...+..+.+++ ++++++++..++ .+.+||.+... ...... .......+.|+|+++.++. +..
T Consensus       107 ~~~~~~------~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~  177 (300)
T TIGR03866       107 VLAEIP------VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYE-IVDNVL-VDQRPRFAEFTADGKELWVSSEI  177 (300)
T ss_pred             EEeEee------CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCe-EEEEEE-cCCCccEEEECCCCCEEEEEcCC
Confidence            554442      122346678876 455666666654 57778976432 222222 2234578999999998754 456


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCC--CCCCcEEEEEEccCCCEEEEE-EeCCeEEEEeCCccceeeecccccCCccceEE
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  235 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  235 (267)
                      ++.|++||+++++....+......  ........++|+|++++++++ ..++.+.+||..+.+.....     .+...+.
T Consensus       178 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-----~~~~~~~  252 (300)
T TIGR03866       178 GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL-----LVGQRVW  252 (300)
T ss_pred             CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----EeCCCcc
Confidence            999999999988765443211100  011123568899999986554 45678999998876655332     1334688


Q ss_pred             EEEECCCCCeEEEe-ECCCcEEEEecCceEe
Q 024451          236 CLGLSADGSALCTG-SWDTNLKIWAFGGYRR  265 (267)
Q Consensus       236 ~~~~~p~~~~l~sg-s~dg~i~~w~~~~~~~  265 (267)
                      +++|+|+|++|+++ +.+|.|++|++.+...
T Consensus       253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       253 QLAFTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             eEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            99999999999876 4699999999877553

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.92  E-value=2.2e-22  Score=161.31  Aligned_cols=237  Identities=20%  Similarity=0.325  Sum_probs=177.4

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +|.+|.++|+ .+||..+|.+.||+.....       ..+....|.+.|+++.-..++  .|+||+.|..|..||-.-..
T Consensus       250 l~v~F~engd-viTgDS~G~i~Iw~~~~~~-------~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k  319 (626)
T KOG2106|consen  250 LCVTFLENGD-VITGDSGGNILIWSKGTNR-------ISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRK  319 (626)
T ss_pred             EEEEEcCCCC-EEeecCCceEEEEeCCCce-------EEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccccc
Confidence            4678999988 8899999999999975421       333344899999999888764  47889999999999842111


Q ss_pred             e------------EEEeC----------------Cc-------cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC
Q 024451           81 R------------TSVFG----------------GE-------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  125 (267)
Q Consensus        81 ~------------~~~~~----------------~~-------~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~  125 (267)
                      .            ..+++                +.       ..++|.+....++.+|+ ..+++|++.|+.+++|+- 
T Consensus       320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~~-  397 (626)
T KOG2106|consen  320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWND-  397 (626)
T ss_pred             cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCC-hhheeeccCcceEEEccC-
Confidence            0            00000                00       12468888888888865 457899999999999982 


Q ss_pred             CcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe
Q 024451          126 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  205 (267)
Q Consensus       126 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~  205 (267)
                        .++.-.. .-..++.|+.|+|.| .+|.|...|...+.|.++...+..    +..  ..+++.++|+|+|.+||.|+.
T Consensus       398 --~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~----~~d--~~~ls~v~ysp~G~~lAvgs~  467 (626)
T KOG2106|consen  398 --HKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI----HTD--NEQLSVVRYSPDGAFLAVGSH  467 (626)
T ss_pred             --CceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE----Eec--CCceEEEEEcCCCCEEEEecC
Confidence              2222222 235789999999999 999999999999999988444332    222  346999999999999999999


Q ss_pred             CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       206 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      |+.|+||-+...........  ..+..+|+.+.||+|+++|.+-|-|-.|..|+.+
T Consensus       468 d~~iyiy~Vs~~g~~y~r~~--k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  468 DNHIYIYRVSANGRKYSRVG--KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             CCeEEEEEECCCCcEEEEee--eecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence            99999998765443322211  3345899999999999999999999999999643

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4.5e-24  Score=185.24  Aligned_cols=250  Identities=18%  Similarity=0.281  Sum_probs=193.9

Q ss_pred             ceeeCCCCCe----EEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451            2 TCAFSPTGQS----VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT   77 (267)
Q Consensus         2 ~~~~~~~g~~----l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~   77 (267)
                      .++|.+-|..    |+.|..||.|.+||...- ......++..+...|++.|..+.|++...++|++|+.||.|.|||+.
T Consensus        69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~-~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln  147 (1049)
T KOG0307|consen   69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI-IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN  147 (1049)
T ss_pred             eeeecccCCCccceeeccccCCceEEecchhh-ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence            5778887766    999999999999997652 12344567778889999999999999888899999999999999998


Q ss_pred             CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc--cceeEEEEecCC-CEEE
Q 024451           78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE--GDVNTVKFFPDG-NRFG  154 (267)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~~~~-~~l~  154 (267)
                      .........   ...-.+.|.+++|+....++|++++.+|.+.|||++.. +.+-.+..+.  ..+..++|||+. ..++
T Consensus       148 n~~tP~~~~---~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  148 KPETPFTPG---SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             CcCCCCCCC---CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-CcccccccCCCccceeeeeeCCCCceeee
Confidence            754333322   12345789999999888889999999999999999854 4444444343  347889999975 4566


Q ss_pred             EeeCCC---cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecccccCCc
Q 024451          155 TGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  230 (267)
Q Consensus       155 ~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~  230 (267)
                      ++++|.   .|.+||+|........++    .+...|.++.|++.+ .++++++.|+.+..|+..+++.+..+.    ..
T Consensus       224 ~As~dd~~PviqlWDlR~assP~k~~~----~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p----~~  295 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRFASSPLKILE----GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP----AQ  295 (1049)
T ss_pred             eecCCCCCceeEeecccccCCchhhhc----ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC----CC
Confidence            676654   599999987654433332    233469999999877 788999999999999999988876653    34


Q ss_pred             cceEEEEEECCCCC-eEEEeECCCcEEEEecCceE
Q 024451          231 EGRITCLGLSADGS-ALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       231 ~~~v~~~~~~p~~~-~l~sgs~dg~i~~w~~~~~~  264 (267)
                      ...+..+.|.|... .++.++-||.|.||.+.+..
T Consensus       296 ~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  296 GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            56789999998655 78889999999999987654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.1e-23  Score=154.61  Aligned_cols=214  Identities=17%  Similarity=0.256  Sum_probs=160.5

Q ss_pred             cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEe-CCCCeEEEEecCCC
Q 024451           39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSCDS  117 (267)
Q Consensus        39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~s~~~d~  117 (267)
                      ..+...|++.|+.+...-.+ ..|++++.|++|||+.++...+...+  ..+.+|++++..+.|. |..+.+|++++.||
T Consensus         4 q~idt~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s~ll--~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg   80 (299)
T KOG1332|consen    4 QTIDTQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQSKLL--AELTGHSGPVWKVAWAHPKFGTILASCSYDG   80 (299)
T ss_pred             eehhhhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCceee--eEecCCCCCeeEEeecccccCcEeeEeecCc
Confidence            34556899999887766555 46999999999999999765431111  1236899999999986 45678999999999


Q ss_pred             eEEEEeCCCcc-cceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEeCCCCe--eeEEEEeecCCCCCCcEEEEE
Q 024451          118 TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIA  192 (267)
Q Consensus       118 ~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~  192 (267)
                      .|.||.-..+. ........|...|++++|.|.  |-.|++++.||.|.|.+.+...  ....+.    ..+...+++++
T Consensus        81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~----~aH~~GvnsVs  156 (299)
T KOG1332|consen   81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV----FAHEIGVNSVS  156 (299)
T ss_pred             eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh----hccccccceee
Confidence            99999765332 123345678999999999884  6789999999999999987641  111122    22344689999


Q ss_pred             EccC---C-----------CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC----CeEEEeECCCc
Q 024451          193 FSIS---G-----------RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG----SALCTGSWDTN  254 (267)
Q Consensus       193 ~s~~---~-----------~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~sgs~dg~  254 (267)
                      |.|.   |           ..|++|+.|..|+||+.....  ..+......|.+.|..++|.|.-    .+||+||.||+
T Consensus       157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~  234 (299)
T KOG1332|consen  157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT  234 (299)
T ss_pred             ecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence            9886   4           469999999999999976542  11222236799999999999963    47999999999


Q ss_pred             EEEEecC
Q 024451          255 LKIWAFG  261 (267)
Q Consensus       255 i~~w~~~  261 (267)
                      +.||..+
T Consensus       235 viIwt~~  241 (299)
T KOG1332|consen  235 VIIWTKD  241 (299)
T ss_pred             EEEEEec
Confidence            9999754

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.91  E-value=4.1e-23  Score=169.45  Aligned_cols=250  Identities=19%  Similarity=0.264  Sum_probs=170.8

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      |++.|-|....|++++-|.+++.||+....-     .-.+.+.||.+.|.++.|.|.+...+++|+.||.|.|||+....
T Consensus       104 fDl~wapge~~lVsasGDsT~r~Wdvk~s~l-----~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~  178 (720)
T KOG0321|consen  104 FDLKWAPGESLLVSASGDSTIRPWDVKTSRL-----VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG  178 (720)
T ss_pred             EeeccCCCceeEEEccCCceeeeeeecccee-----ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence            4677889668899999999999999976331     11224789999999999999998899999999999999986321


Q ss_pred             e-------EEEeCCc---------------cccCCccceEE---EEEeCCCCeEEEEecC-CCeEEEEeCCCcccc----
Q 024451           81 R-------TSVFGGE---------------FQSGHTADVLS---VSISGSNSRMFVSGSC-DSTARLWDTRVASRA----  130 (267)
Q Consensus        81 ~-------~~~~~~~---------------~~~~~~~~i~~---~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~----  130 (267)
                      .       ..+....               .-..+...|.+   +.+.. +...+++++. |+.|+|||++.....    
T Consensus       179 ~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~e  257 (720)
T KOG0321|consen  179 VDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQE  257 (720)
T ss_pred             hhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccC
Confidence            0       0000000               00134445544   44443 4456788776 999999999853221    


Q ss_pred             ---eEEeecc---ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451          131 ---VRTFHGH---EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  204 (267)
Q Consensus       131 ---~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~  204 (267)
                         ...+.-|   .-.+.++.....|.++.+.+.|+.|.+|++.+...-......+..+....+ .-..+|++.++++|+
T Consensus       258 p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgS  336 (720)
T KOG0321|consen  258 PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGS  336 (720)
T ss_pred             CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccC
Confidence               1122223   224667777777888888888999999999865432211111111111222 234689999999999


Q ss_pred             eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC-CeEEEeECCCcEEEEec
Q 024451          205 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG-SALCTGSWDTNLKIWAF  260 (267)
Q Consensus       205 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~sgs~dg~i~~w~~  260 (267)
                      .|...++|.+...+.....   ...|...|++++|.|.. .-+|+++.|-++++|++
T Consensus       337 sd~~ayiw~vs~~e~~~~~---l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  337 SDEQAYIWVVSSPEAPPAL---LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             CCcceeeeeecCccCChhh---hhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence            9999999997765543222   25788999999998742 23566699999999986

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=1.4e-22  Score=167.83  Aligned_cols=248  Identities=20%  Similarity=0.254  Sum_probs=188.1

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .+-|+|+++.+++-|.-|..++|....    ...........||.+.|..+.|.|.+ .+|++.|.|.+-|++-.-..+.
T Consensus       321 g~lw~~n~~~ii~~g~~Gg~hlWkt~d----~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~  395 (764)
T KOG1063|consen  321 GGLWSPNSNVIIAHGRTGGFHLWKTKD----KTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQ  395 (764)
T ss_pred             eEEEcCCCCEEEEecccCcEEEEeccC----ccceeeccccccccccceeeeecCCC-CEEEEeccccceeeeccccccc
Confidence            467999999999999999999998322    22233455678999999999999976 4999999999999885541111


Q ss_pred             E-EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc---------------------------------
Q 024451           82 T-SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA---------------------------------  127 (267)
Q Consensus        82 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~---------------------------------  127 (267)
                      . ..+.  -.+-|.-++.|+++.+. ...|++|...+.+|+|+....                                 
T Consensus       396 ~wHEia--RPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnK  472 (764)
T KOG1063|consen  396 EWHEIA--RPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNK  472 (764)
T ss_pred             ceeeec--ccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCC
Confidence            1 1111  12347778899998854 567899999999999975210                                 


Q ss_pred             ----------cc--------------------------------ceEEeeccccceeEEEEecCCCEEEEeeCCC-----
Q 024451          128 ----------SR--------------------------------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-----  160 (267)
Q Consensus       128 ----------~~--------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----  160 (267)
                                ..                                .+..+-||...|++++.+|+++++|++++..     
T Consensus       473 a~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehA  552 (764)
T KOG1063|consen  473 AFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHA  552 (764)
T ss_pred             CCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccce
Confidence                      00                                0123458999999999999999999998654     


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce-eeecccccCCccceEEEEEE
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~  239 (267)
                      -|++|+..+-.....+.     .+...|+.++|||++++|++.+.|+.+.+|..+.... ...+.. .+.|..-|+...|
T Consensus       553 vI~lw~t~~W~~~~~L~-----~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~-~k~HtRIIWdcsW  626 (764)
T KOG1063|consen  553 VIRLWNTANWLQVQELE-----GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFAC-LKAHTRIIWDCSW  626 (764)
T ss_pred             EEEEEeccchhhhheec-----ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcc-ccccceEEEEccc
Confidence            49999988766554332     2344699999999999999999999999998643221 222222 3679999999999


Q ss_pred             CCCCCeEEEeECCCcEEEEecCce
Q 024451          240 SADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      +|++.++|++|.|+.|++|.....
T Consensus       627 ~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  627 SPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             CcccceeEEecCCceEEEEeccCc
Confidence            999999999999999999986554

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.5e-22  Score=158.61  Aligned_cols=209  Identities=22%  Similarity=0.299  Sum_probs=164.2

Q ss_pred             cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451           39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  118 (267)
Q Consensus        39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~  118 (267)
                      ..++..|+++|+.+.|++++ .+||||+.|.+..||++.........  ....+|..+|..+.|+| +++++++++.|-.
T Consensus       217 ~qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~--~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~  292 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLK--KTLVGHSQPVSYIMWSP-DDRYLLACGFDEV  292 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeee--eeeecccCceEEEEECC-CCCeEEecCchHh
Confidence            45688999999999999965 69999999999999988654432221  12247999999999997 5678899999999


Q ss_pred             EEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC
Q 024451          119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR  198 (267)
Q Consensus       119 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  198 (267)
                      +++||+.++.....--.+|...+.+++|.|||..+++|+.|+++..||++. +.+.....    -+.+.|.+++.++||.
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~g----vr~~~v~dlait~Dgk  367 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEG----VRDPKVHDLAITYDGK  367 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccc----cccceeEEEEEcCCCc
Confidence            999999765432222234557889999999999999999999999999974 33322211    1235799999999999


Q ss_pred             EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          199 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       199 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      ++++.+.|..+++|+.+.......     ..-..+|++..+|.++++.++-=.+..+.+||+.
T Consensus       368 ~vl~v~~d~~i~l~~~e~~~dr~l-----ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~  425 (519)
T KOG0293|consen  368 YVLLVTVDKKIRLYNREARVDRGL-----ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE  425 (519)
T ss_pred             EEEEEecccceeeechhhhhhhcc-----ccccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence            999999999999999765432211     1234589999999999999998899999999974

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=1.4e-22  Score=160.49  Aligned_cols=251  Identities=22%  Similarity=0.291  Sum_probs=179.0

Q ss_pred             ceeeCCCC--CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            2 TCAFSPTG--QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         2 ~~~~~~~g--~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      +++|+|..  +++++|..-|+|-+||+......   .+-...+.+|..+|.++.|+|.+...+++.|.||+|++-|++..
T Consensus       191 ~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~  267 (498)
T KOG4328|consen  191 SLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN  267 (498)
T ss_pred             EEEecccCcceEEEEccCCCcEEEEecCCCCCc---cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch
Confidence            67899866  58899999999999999632111   12234567899999999999998889999999999999998754


Q ss_pred             eeEEE-----------------------eCC-----------------ccccCCccceEEEEEeCCCCeEEEEecCCCeE
Q 024451           80 LRTSV-----------------------FGG-----------------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTA  119 (267)
Q Consensus        80 ~~~~~-----------------------~~~-----------------~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i  119 (267)
                      ....+                       +..                 ....-|+..|.+++++|-...+++|++.|+++
T Consensus       268 i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~  347 (498)
T KOG4328|consen  268 ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTA  347 (498)
T ss_pred             hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcce
Confidence            21110                       000                 00124777999999999988999999999999


Q ss_pred             EEEeCCCccc---ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCC---CCeeeEEEEeecCCCCCCc--EEEE
Q 024451          120 RLWDTRVASR---AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR---TGHQLQVYYQQHGENEIPH--VTSI  191 (267)
Q Consensus       120 ~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~--v~~~  191 (267)
                      +|||++....   +.-....|...|.++-|+|.+..+++.+.|..|+|||..   ..-+..... .|..-...+  ....
T Consensus       348 kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA  426 (498)
T KOG4328|consen  348 KIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKA  426 (498)
T ss_pred             eeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-eccCcccccccchhh
Confidence            9999985332   234455799999999999988779999999999999984   111111111 111111112  2345


Q ss_pred             EEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE-EEECCCCCeEEEe-ECCCcEEEEe
Q 024451          192 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC-LGLSADGSALCTG-SWDTNLKIWA  259 (267)
Q Consensus       192 ~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~sg-s~dg~i~~w~  259 (267)
                      .|.|+..++++|-.-..|-+||...++.+..+.   ......|.+ .+|+|-+..+++| +..|.|.||.
T Consensus       427 ~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~---~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  427 AWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH---DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             eeCCCccEEEEeccCcceeEEcCCCCEEeeecc---CccccccccceeecccccceeccCCccceEEEEe
Confidence            699999999999988999999988777665442   122223444 4889988855554 4467777774

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=2.1e-22  Score=167.54  Aligned_cols=242  Identities=17%  Similarity=0.230  Sum_probs=185.7

Q ss_pred             eEEEccCCCeEEEeecCCCCCCCC------------------C--------C----cccccccCCeeeEEEEEEecCCCe
Q 024451           11 SVACGGLDSVCSIFNLNSPTDKDG------------------N--------L----PVSRMLSGHKGYVSCCQYVPDEDT   60 (267)
Q Consensus        11 ~l~~~~~d~~v~~w~~~~~~~~~~------------------~--------~----~~~~~~~~h~~~v~~~~~~~~~~~   60 (267)
                      .++|++.|++||+|+++...+..-                  .        .    +......+-+..+.+++.+|++ +
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-q  472 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-Q  472 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-c
Confidence            388999999999999876221100                  0        0    0111223445678999999965 7


Q ss_pred             eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC--CCeEEEEecCCCeEEEEeCCCcccceEEeeccc
Q 024451           61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE  138 (267)
Q Consensus        61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~  138 (267)
                      +|++|..-|++++|++........+     .+|+..|.++.++-+  ..+++++++.|..|.|+|+...-.++..+.+|.
T Consensus       473 hLAsGDr~GnlrVy~Lq~l~~~~~~-----eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS  547 (1080)
T KOG1408|consen  473 HLASGDRGGNLRVYDLQELEYTCFM-----EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS  547 (1080)
T ss_pred             eecccCccCceEEEEehhhhhhhhe-----ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccc
Confidence            9999999999999999765433332     469999999999854  346889999999999999986666778889999


Q ss_pred             cceeEEEEecCC--CEEEEeeCCCcEEEEeCCC-CeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451          139 GDVNTVKFFPDG--NRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  215 (267)
Q Consensus       139 ~~i~~~~~~~~~--~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~  215 (267)
                      ..|+++.|-.+|  ..+++++.|+.|.+ +... ...-..+...+.......+..++..|+-.++++++.|+.|+|||.+
T Consensus       548 ssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~  626 (1080)
T KOG1408|consen  548 SSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIE  626 (1080)
T ss_pred             cceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecc
Confidence            999999998776  67899999988764 4322 1112223333333344568889999999999999999999999999


Q ss_pred             ccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          216 LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      .++....+... ..|++....+...|.|.|||+...|+++.++||
T Consensus       627 sgKq~k~FKgs-~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df  670 (1080)
T KOG1408|consen  627 SGKQVKSFKGS-RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF  670 (1080)
T ss_pred             ccceeeeeccc-ccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence            99888777554 357788888999999999999999999999997

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=3.4e-21  Score=154.54  Aligned_cols=235  Identities=20%  Similarity=0.332  Sum_probs=174.3

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccC-CeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      .+.|+|.+..|+...-.+.+..|++....-    .+...++.. .+..|.|+.|.++++  +++|..+|.|.||+..+..
T Consensus       205 ~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l----~k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~  278 (626)
T KOG2106|consen  205 LATFHPTDPNLIITCGKGHLYFWTLRGGSL----VKRQGIFEKREKKFVLCVTFLENGD--VITGDSGGNILIWSKGTNR  278 (626)
T ss_pred             EEEeccCCCcEEEEeCCceEEEEEccCCce----EEEeeccccccceEEEEEEEcCCCC--EEeecCCceEEEEeCCCce
Confidence            467999886666666677899998765321    112223332 247899999998764  8999999999999986543


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-------------------------------
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-------------------------------  129 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-------------------------------  129 (267)
                      -...    .. .|.+.|.+++... ++ .+++|+.|..|..||-.....                               
T Consensus       279 ~~k~----~~-aH~ggv~~L~~lr-~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i  351 (626)
T KOG2106|consen  279 ISKQ----VH-AHDGGVFSLCMLR-DG-TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI  351 (626)
T ss_pred             EEeE----ee-ecCCceEEEEEec-Cc-cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence            2222    12 6999999998874 33 567899999999998321100                               


Q ss_pred             --------ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451          130 --------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF  201 (267)
Q Consensus       130 --------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  201 (267)
                              .....++|......++.+|+.+++++++.|+.+++|+  ..+...  ....    ..+..++.|+|.| .++
T Consensus       352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w--t~~~----~d~~~~~~fhpsg-~va  422 (626)
T KOG2106|consen  352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW--TKII----EDPAECADFHPSG-VVA  422 (626)
T ss_pred             EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE--EEEe----cCceeEeeccCcc-eEE
Confidence                    0112357888888999999999999999999999999  333322  1111    1357899999999 999


Q ss_pred             EEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          202 AGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       202 ~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      .|+..|...+.|.++...+.    ++.. ++++++++|+|+|.+||.||+|+.|.||.+..-
T Consensus       423 ~Gt~~G~w~V~d~e~~~lv~----~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  423 VGTATGRWFVLDTETQDLVT----IHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             EeeccceEEEEecccceeEE----EEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            99999999999988754442    2233 789999999999999999999999999987543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=6.4e-22  Score=150.14  Aligned_cols=194  Identities=22%  Similarity=0.366  Sum_probs=141.1

Q ss_pred             eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC-CeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451            5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTS   83 (267)
Q Consensus         5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~   83 (267)
                      ..-+|.++++||.|.+|+|||+....       ....+..|.+.|+++.|.+.- ..+|++|+.||.|.+|+...=....
T Consensus        49 vAVs~~~~aSGssDetI~IYDm~k~~-------qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~  121 (362)
T KOG0294|consen   49 LAVSGPYVASGSSDETIHIYDMRKRK-------QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK  121 (362)
T ss_pred             EEecceeEeccCCCCcEEEEeccchh-------hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee
Confidence            44578999999999999999987632       345677899999999998642 2379999999999999987644443


Q ss_pred             EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc----------------------------eEEee
Q 024451           84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA----------------------------VRTFH  135 (267)
Q Consensus        84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~----------------------------~~~~~  135 (267)
                      .+     .+|...|+.++++|+ +++.++.+.|+.+++|++-.++..                            +..++
T Consensus       122 sl-----K~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q  195 (362)
T KOG0294|consen  122 SL-----KAHKGQVTDLSIHPS-GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQ  195 (362)
T ss_pred             ee-----cccccccceeEecCC-CceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEe
Confidence            33     578889999999975 678899999999999997432110                            00000


Q ss_pred             ----------ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEE--ccCCCEEEEE
Q 024451          136 ----------GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF--SISGRLLFAG  203 (267)
Q Consensus       136 ----------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~g  203 (267)
                                .....+.++.|. ++.++++|+.|+.|++||.++......+..+     ...|..+.+  .|.+.+|++.
T Consensus       196 ~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH-----~~RVK~i~~~~~~~~~~lvTa  269 (362)
T KOG0294|consen  196 LDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH-----ENRVKDIASYTNPEHEYLVTA  269 (362)
T ss_pred             cccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc-----hhheeeeEEEecCCceEEEEe
Confidence                      001123444443 5667889999999999999875554443322     224666652  5678899999


Q ss_pred             EeCCeEEEEeCCcc
Q 024451          204 YSNGDCYVWDTLLA  217 (267)
Q Consensus       204 ~~dg~i~i~d~~~~  217 (267)
                      ++||.|++||+...
T Consensus       270 SSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  270 SSDGFIKVWDIDME  283 (362)
T ss_pred             ccCceEEEEEcccc
Confidence            99999999998665

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=6.2e-23  Score=166.25  Aligned_cols=248  Identities=20%  Similarity=0.334  Sum_probs=175.3

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCC-CCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC--
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSP-TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--   79 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--   79 (267)
                      ++|.|....|++++.|+++++|+++.. ...........++++|.++|-|+...+. ..++++|+.||+|+.|++...  
T Consensus       300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~I~~w~~p~n~d  378 (577)
T KOG0642|consen  300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGTIRCWNLPPNQD  378 (577)
T ss_pred             hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC-ceEEEeeccCceeeeeccCCCCC
Confidence            568888899999999999999999441 2233445567789999999999998775 468999999999999977521  


Q ss_pred             ----eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee---ccccceeEEEEecCC-C
Q 024451           80 ----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDG-N  151 (267)
Q Consensus        80 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~-~  151 (267)
                          ....++. ....||.+.+..+.+++... .+++++.||+++.|+..... + ..+.   .|.. -.++++-... .
T Consensus       379 p~ds~dp~vl~-~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~-~-~~f~~~~e~g~-Plsvd~~ss~~a  453 (577)
T KOG0642|consen  379 PDDSYDPSVLS-GTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEES-P-CTFGEPKEHGY-PLSVDRTSSRPA  453 (577)
T ss_pred             cccccCcchhc-cceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcC-c-cccCCccccCC-cceEeeccchhH
Confidence                1111222 22358999999999997654 47899999999999875322 2 2222   2221 2344443222 2


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEEeecC--CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCC
Q 024451          152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS  229 (267)
Q Consensus       152 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~  229 (267)
                      ..++...-+.--+.+...++.+..+.....  ......+..+.+.|.+.+.+++..|+.|+++|..+++.+..+    ..
T Consensus       454 ~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~----~a  529 (577)
T KOG0642|consen  454 HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM----VA  529 (577)
T ss_pred             hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe----ee
Confidence            333333333334444444444433322111  111235677888999999999999999999999888887665    46


Q ss_pred             ccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          230 HEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      |...++++++.|+|.+|++++.||.+++|.+
T Consensus       530 ~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  530 HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             ccceecceeecCCCceEEeecCCceeehhhc
Confidence            8899999999999999999999999999986

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.90  E-value=2.2e-22  Score=156.88  Aligned_cols=216  Identities=20%  Similarity=0.286  Sum_probs=162.3

Q ss_pred             cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe--CCccccCCccceEEEEEeCCCCeEEEEecCC
Q 024451           39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF--GGEFQSGHTADVLSVSISGSNSRMFVSGSCD  116 (267)
Q Consensus        39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d  116 (267)
                      ...+.||+++|-.++|.|.++..|||||+|.+|+||.+..+.....+  +.....+|...|-.+.|+|.-.+.+++++.|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            34678999999999999999999999999999999999754321111  1122358999999999999888899999999


Q ss_pred             CeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC
Q 024451          117 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS  196 (267)
Q Consensus       117 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  196 (267)
                      .+|.+|++.++...+ .+. |.+.|.++.|+.+|.++++.+.|++|||||.++++.+..-..+    +......+.|-.+
T Consensus       154 n~v~iWnv~tgeali-~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h----eG~k~~Raifl~~  227 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALI-TLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH----EGAKPARAIFLAS  227 (472)
T ss_pred             ceEEEEeccCCceee-ecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc----cCCCcceeEEecc
Confidence            999999998655433 344 9999999999999999999999999999999998876543222    1223456678888


Q ss_pred             CCEEEEEE---eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeE-CCCcEEEEecCc
Q 024451          197 GRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAFGG  262 (267)
Q Consensus       197 ~~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~~  262 (267)
                      +.++.+|.   +++++-+||.........+..+.  ....|.--=+.||.+++..++ .|+.||-|-+..
T Consensus       228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             CceeeeccccccccceeccCcccccCcceeEEec--cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence            88777775   46899999976544332222221  223344445678888776544 599999997644

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6.1e-21  Score=157.75  Aligned_cols=241  Identities=18%  Similarity=0.326  Sum_probs=183.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCC-eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      ++||+.+.+.||.+-.||.|.+|++...-      -+...+.++ .+.|-+++|.+.  ..|+|.+.+|+|.-||+.+.+
T Consensus        30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w------~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNW------FLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSITEWDLHTLK  101 (691)
T ss_pred             EEEEeccCCceeeeccCCcEEEEccCCCc------eeeEEEecCCCCceeeEEEccC--CeEEeecCCceEEEEecccCc
Confidence            68999999999999999999999986521      123344444 467899999853  469999999999999999987


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-eEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDD  159 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  159 (267)
                      +...+.     .-...|.+++.+|.+ ..++.|+.||.+.+++.....-. .+.+.--.+.+.++.|+|++..+++|+.|
T Consensus       102 ~~~~~d-----~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D  175 (691)
T KOG2048|consen  102 QKYNID-----SNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID  175 (691)
T ss_pred             eeEEec-----CCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence            766553     345689999999765 46778899998888876532211 12232235789999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEEEEeec---CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQH---GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  236 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  236 (267)
                      |-|++||..+++.+....-..   ...+..-|.++.|- ....|++|.+.|.|.+||...+..+...    ..|.+.|.+
T Consensus       176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~----~~h~adVl~  250 (691)
T KOG2048|consen  176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSH----SCHDADVLA  250 (691)
T ss_pred             ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhh----hhhhcceeE
Confidence            999999999887665221111   11122346677665 4468999999999999998887766544    568899999


Q ss_pred             EEECCCCCeEEEeECCCcEEEEecC
Q 024451          237 LGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       237 ~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      ++.++++..+.+++.|+.|.-|...
T Consensus       251 Lav~~~~d~vfsaGvd~~ii~~~~~  275 (691)
T KOG2048|consen  251 LAVADNEDRVFSAGVDPKIIQYSLT  275 (691)
T ss_pred             EEEcCCCCeEEEccCCCceEEEEec
Confidence            9999999999999999999888653

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.90  E-value=1.5e-21  Score=148.70  Aligned_cols=248  Identities=22%  Similarity=0.339  Sum_probs=171.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCC---C--Ccc---cccccCCeeeEEEEEEec------CCCeeEEEeeC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG---N--LPV---SRMLSGHKGYVSCCQYVP------DEDTHLITSSG   67 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~---~--~~~---~~~~~~h~~~v~~~~~~~------~~~~~l~s~~~   67 (267)
                      .|.|+|||..|++-+.|..+++|++.......+   .  .+.   .+...|  .-|+...|-+      .+..++++.+.
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg--~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEG--ETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccC--CEEEEEEeeeccccCCCccceeeeccc
Confidence            378999999999999999999999876432221   1  111   111122  3355555531      13468888999


Q ss_pred             CCeEEEEeCCCCeeEEEeCCccccCCcc---ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE--Ee-----ecc
Q 024451           68 DQTCVLWDITTGLRTSVFGGEFQSGHTA---DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR--TF-----HGH  137 (267)
Q Consensus        68 d~~v~iwd~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~--~~-----~~~  137 (267)
                      |..|++||.-+++....+.+.   .|.+   ...++.|++...++  -++....|++||+..+.....  ..     .+-
T Consensus       132 ~~PIh~wdaftG~lraSy~~y---dh~de~taAhsL~Fs~DGeql--faGykrcirvFdt~RpGr~c~vy~t~~~~k~gq  206 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAY---DHQDEYTAAHSLQFSPDGEQL--FAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ  206 (406)
T ss_pred             cCceeeeeccccccccchhhh---hhHHhhhhheeEEecCCCCeE--eecccceEEEeeccCCCCCCcchhhhhcccccc
Confidence            999999999999877666432   2333   34689999765543  367788999999843332211  11     123


Q ss_pred             ccceeEEEEec-CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCC
Q 024451          138 EGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTL  215 (267)
Q Consensus       138 ~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~  215 (267)
                      .+.+.+++|+| +.+.++.++-...+-|+.-.....+..+.     ++...|+.++|.++|+.|++|.. +-.|..||++
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-----gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-----GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-----ccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence            56789999999 45689999988888888877666655543     23457999999999999999984 6789999987


Q ss_pred             ccce-eeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          216 LAKV-VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       216 ~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ..+. +..+.+-....+.+|. ....|.+++|++|+.||.|++|++.+
T Consensus       282 ~~~~pv~~L~rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  282 YSRDPVYALERHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             hccchhhhhhhhccCccceEE-EecCCCCceeeccCCCccEEEEecCC
Confidence            6443 2223221111334443 56679999999999999999999754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.7e-21  Score=146.38  Aligned_cols=219  Identities=20%  Similarity=0.293  Sum_probs=154.4

Q ss_pred             ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCCeEE
Q 024451           42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTAR  120 (267)
Q Consensus        42 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~i~  120 (267)
                      ..+|.+-|+++.|.+.+ +.+++|+.|++|+|||.+...........+ ..|.+.|..+.|.++ .++.+++++.|++++
T Consensus         9 ~s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             ccCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCcee
Confidence            46899999999999976 579999999999999975442222111122 368999999998754 578899999999999


Q ss_pred             EEeCCCc--c------cceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC--------C
Q 024451          121 LWDTRVA--S------RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--------E  182 (267)
Q Consensus       121 iwd~~~~--~------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~  182 (267)
                      ||.-...  .      .....+....+.|..+.|.|.  |-.+|+++.||.+|||+.-..-.+....-.+.        .
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            9975211  0      013345566788999999995  66899999999999999654322211111110        1


Q ss_pred             CCCCcEEEEEEccC---CCEEEEEEeC-----CeEEEEeCCccc-eeeecccccCCccceEEEEEECCC----CCeEEEe
Q 024451          183 NEIPHVTSIAFSIS---GRLLFAGYSN-----GDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSAD----GSALCTG  249 (267)
Q Consensus       183 ~~~~~v~~~~~s~~---~~~l~~g~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~----~~~l~sg  249 (267)
                      .......++.|+|.   .++|++|+.+     +.++||...... .-.....+ ..|..+|+.++|.|+    ...||++
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L-~d~~dpI~di~wAPn~Gr~y~~lAvA  245 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL-PDHTDPIRDISWAPNIGRSYHLLAVA  245 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc-CCCCCcceeeeeccccCCceeeEEEe
Confidence            12234678888864   4578888765     478888643322 23333344 379999999999997    3479999


Q ss_pred             ECCCcEEEEecCceE
Q 024451          250 SWDTNLKIWAFGGYR  264 (267)
Q Consensus       250 s~dg~i~~w~~~~~~  264 (267)
                      +.|| |+||.+...+
T Consensus       246 ~kDg-v~I~~v~~~~  259 (361)
T KOG2445|consen  246 TKDG-VRIFKVKVAR  259 (361)
T ss_pred             ecCc-EEEEEEeecc
Confidence            9999 9999987543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-21  Score=149.35  Aligned_cols=211  Identities=21%  Similarity=0.267  Sum_probs=148.6

Q ss_pred             ccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee--EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451           40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  117 (267)
Q Consensus        40 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~  117 (267)
                      ..+++|.+.|+++.|+.++ .+|++++.|++|++|++..=..  -..+......+|   .+.+.|.|.-..++++.-...
T Consensus        80 ~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh---pT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH---PTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             hhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC---ceEEEECCCcceEEEEEccCC
Confidence            4689999999999999876 5899999999999999864110  001111122233   456778776666777777777


Q ss_pred             eEEEEeCCCc---ccc-----eE---EeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCC
Q 024451          118 TARLWDTRVA---SRA-----VR---TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP  186 (267)
Q Consensus       118 ~i~iwd~~~~---~~~-----~~---~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  186 (267)
                      ++++|.+...   ...     +.   ...-|...+-.+.....++++++++.|.+|.+||++ |+.+..+-..     ..
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-----q~  229 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-----QS  229 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-----cc
Confidence            8999965311   111     11   112344556666666678999999999999999998 6665543221     12


Q ss_pred             cEEEEEEccCCCEEEEEEeCCeEEEEeCCccc-----eeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK-----VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .....+.||+|+++++++-.-.+++|..--.+     .+..... .++|.+.|..++|+|+.+.+++.|.||+++||+.+
T Consensus       230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~-LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS-LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe-eccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            34566789999999998888889999852211     1111112 26899999999999999999999999999999863

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=5.2e-22  Score=156.71  Aligned_cols=197  Identities=19%  Similarity=0.256  Sum_probs=152.9

Q ss_pred             CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451            9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE   88 (267)
Q Consensus         9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   88 (267)
                      -+.|++||.|.+|++||+....       +..++.-|.+.|.++.|+|....+|++|+.|++|++.|.+......   ..
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~-------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~---~~  325 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGK-------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG---KE  325 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCC-------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC---ce
Confidence            3689999999999999998643       5667778999999999999999999999999999999997421110   01


Q ss_pred             cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCCCcEEEEeC
Q 024451           89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDI  167 (267)
Q Consensus        89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~  167 (267)
                        ..-.+.|-.+.|.+.....++++..||.|+-+|+|...+++..+++|.++|.++.+++. ...+++++.|+.+++|++
T Consensus       326 --wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~  403 (463)
T KOG0270|consen  326 --WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF  403 (463)
T ss_pred             --EEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence              12345678889998888889999999999999999888899999999999999999875 457899999999999998


Q ss_pred             CCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCcccee
Q 024451          168 RTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~  220 (267)
                      ...+.... .. + ....+...|.++.|+-. +++.|+..+.+++||..+...+
T Consensus       404 ~~~~~~~v-~~-~-~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  404 DVDSPKSV-KE-H-SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cCCCCccc-cc-c-cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            75433211 11 1 11122345556666654 5677888889999998765544

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=3.9e-23  Score=159.40  Aligned_cols=160  Identities=23%  Similarity=0.425  Sum_probs=134.5

Q ss_pred             CeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeC
Q 024451           45 HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  124 (267)
Q Consensus        45 h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~  124 (267)
                      ..+.|.++.|+|-+...|++|+.|++|.+||+.+...+.-..      -.-..+.++|+| +...|.+++.|..+..+|+
T Consensus       186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi------~~mRTN~IswnP-eafnF~~a~ED~nlY~~Dm  258 (433)
T KOG0268|consen  186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI------LTMRTNTICWNP-EAFNFVAANEDHNLYTYDM  258 (433)
T ss_pred             CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee------eeccccceecCc-cccceeeccccccceehhh
Confidence            346789999999988889999999999999998775543321      123457889998 7778899999999999999


Q ss_pred             CCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451          125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  204 (267)
Q Consensus       125 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~  204 (267)
                      +....++..+.+|...|.+++|+|.|+-|++||-|++||||..+.+.....+..    .....|.++.||.|.+++++|+
T Consensus       259 R~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht----kRMq~V~~Vk~S~Dskyi~SGS  334 (433)
T KOG0268|consen  259 RNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT----KRMQHVFCVKYSMDSKYIISGS  334 (433)
T ss_pred             hhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH----hhhheeeEEEEeccccEEEecC
Confidence            987788888999999999999999999999999999999999987654443322    2345699999999999999999


Q ss_pred             eCCeEEEEeCC
Q 024451          205 SNGDCYVWDTL  215 (267)
Q Consensus       205 ~dg~i~i~d~~  215 (267)
                      .|+.|++|...
T Consensus       335 dd~nvRlWka~  345 (433)
T KOG0268|consen  335 DDGNVRLWKAK  345 (433)
T ss_pred             CCcceeeeecc
Confidence            99999999864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.8e-21  Score=152.71  Aligned_cols=224  Identities=23%  Similarity=0.355  Sum_probs=168.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC---
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---   78 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~---   78 (267)
                      +++-+|.|.+|+.|+.-|.+.+|.+...       .+...+.+|-..|+|+.|+.++ .+++|||.||.|.+|.+..   
T Consensus        86 al~s~n~G~~l~ag~i~g~lYlWelssG-------~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   86 ALASSNLGYFLLAGTISGNLYLWELSSG-------ILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVS  157 (476)
T ss_pred             eeecCCCceEEEeecccCcEEEEEeccc-------cHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecc
Confidence            5667899999999989999999998753       3566778999999999999865 6899999999999997742   


Q ss_pred             ------CeeEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC
Q 024451           79 ------GLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN  151 (267)
Q Consensus        79 ------~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  151 (267)
                            ..+...+     ..|.-.|..+.+... ....++|++.|.++|+||+.... .+..+. -...+.+++.+|.+.
T Consensus       158 a~~~~~~~p~~~f-----~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~-fp~si~av~lDpae~  230 (476)
T KOG0646|consen  158 ADNDHSVKPLHIF-----SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTIT-FPSSIKAVALDPAER  230 (476)
T ss_pred             cccCCCccceeee-----ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-eeEEEe-cCCcceeEEEccccc
Confidence                  1222222     478889998887643 34567899999999999997543 333332 346789999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCe--eeEE-----------EEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc
Q 024451          152 RFGTGSDDGTCRLFDIRTGH--QLQV-----------YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  218 (267)
Q Consensus       152 ~l~~~~~d~~i~iwd~~~~~--~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~  218 (267)
                      .+.+|+++|.|.+.++....  ....           +....+......|++++.+.||..|++|+.||.+.+||.....
T Consensus       231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence            99999999999998875422  1100           0000011122479999999999999999999999999998776


Q ss_pred             eeeecccccCCccceEEEEEECCCCC
Q 024451          219 VVLNLGSLQNSHEGRITCLGLSADGS  244 (267)
Q Consensus       219 ~~~~~~~~~~~~~~~v~~~~~~p~~~  244 (267)
                      .+....    .-.++|+.+.+.|-.+
T Consensus       311 ~iRtl~----~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  311 CIRTLQ----TSKGPVTNLQINPLER  332 (476)
T ss_pred             HHHHHh----hhccccceeEeecccc
Confidence            665442    1457888888866433

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=6.9e-20  Score=147.40  Aligned_cols=232  Identities=13%  Similarity=0.146  Sum_probs=157.4

Q ss_pred             CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451            9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE   88 (267)
Q Consensus         9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   88 (267)
                      ++++++++.|+.+++||+....       ....+..|.. +.++.|+|++...+++++.++.|++||..++.....+.  
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~-------~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--   70 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLE-------VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--   70 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCc-------eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--
Confidence            4678999999999999986421       3344444433 56789999876545677889999999998876554432  


Q ss_pred             cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC-cEEEEeC
Q 024451           89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-TCRLFDI  167 (267)
Q Consensus        89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~  167 (267)
                         .+ ..+..+.+++....++++++.++.+++||++. ...+..+. +...+.++.|+|+++.++++..++ .+.+||.
T Consensus        71 ---~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~  144 (300)
T TIGR03866        71 ---SG-PDPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDT  144 (300)
T ss_pred             ---CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeC
Confidence               12 22456778876555666667789999999874 33444443 223468899999999999888765 5677898


Q ss_pred             CCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecccc-cCCccc--eEEEEEECCCC
Q 024451          168 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSL-QNSHEG--RITCLGLSADG  243 (267)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~-~~~~~~--~v~~~~~~p~~  243 (267)
                      ++++........      ..+..++|+++++++++++ .++.+++||+.+.+.+..+... ...+..  ....++|+|++
T Consensus       145 ~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  218 (300)
T TIGR03866       145 KTYEIVDNVLVD------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG  218 (300)
T ss_pred             CCCeEEEEEEcC------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence            876654332211      1246789999999886554 6899999999877654433110 001111  23468899999


Q ss_pred             CeEEE-eECCCcEEEEecCc
Q 024451          244 SALCT-GSWDTNLKIWAFGG  262 (267)
Q Consensus       244 ~~l~s-gs~dg~i~~w~~~~  262 (267)
                      ++++. .+.++.+.+|+...
T Consensus       219 ~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       219 KTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             CEEEEEcCCCCeEEEEECCC
Confidence            98544 44567899998754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=1.6e-21  Score=152.49  Aligned_cols=254  Identities=24%  Similarity=0.330  Sum_probs=175.8

Q ss_pred             ceeeCCCCC-eEEEccCCCeEEEeecCCCCCCCC--CCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC-
Q 024451            2 TCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDG--NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-   77 (267)
Q Consensus         2 ~~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~-   77 (267)
                      .+.|.+.+. .|+|||.|..+++|.+.......+  .+.....+..|...|++|+|+|++ ..|+||+.+|.|.+|... 
T Consensus        18 s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~   96 (434)
T KOG1009|consen   18 SVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGD   96 (434)
T ss_pred             EEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecC
Confidence            345666554 999999999999999876544443  445566789999999999999976 589999999999999765 


Q ss_pred             -------CCe---eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEe
Q 024451           78 -------TGL---RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF  147 (267)
Q Consensus        78 -------~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~  147 (267)
                             +..   +..-.......+|.+.+..++|++ +++.+++++.|..+++||+..+ .....+.+|..-+..++|.
T Consensus        97 ~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqgvawD  174 (434)
T KOG1009|consen   97 VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQGVAWD  174 (434)
T ss_pred             cCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc-eeEeeccccccccceeecc
Confidence                   200   000000112346899999999996 5678899999999999999854 4677888999999999999


Q ss_pred             cCCCEEEEeeCCCcEEEEeCCCCeeeEEEE----e--e--cC----------CCCCCcEEEEEEccCCCEEEEEE-----
Q 024451          148 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYY----Q--Q--HG----------ENEIPHVTSIAFSISGRLLFAGY-----  204 (267)
Q Consensus       148 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~--~--~~----------~~~~~~v~~~~~s~~~~~l~~g~-----  204 (267)
                      |-++++++-+.|...+.+.....+......    .  .  +.          .........++|+|+|..+++..     
T Consensus       175 pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~  254 (434)
T KOG1009|consen  175 PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKV  254 (434)
T ss_pred             hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeee
Confidence            999999999999877777765433222111    0  0  00          00011233456666666655532     


Q ss_pred             ----------------------------------------------------------------eCCeEEEEeCCcccee
Q 024451          205 ----------------------------------------------------------------SNGDCYVWDTLLAKVV  220 (267)
Q Consensus       205 ----------------------------------------------------------------~dg~i~i~d~~~~~~~  220 (267)
                                                                                      ....|++||.++.+++
T Consensus       255 g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~  334 (434)
T KOG1009|consen  255 GGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPL  334 (434)
T ss_pred             CCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccce
Confidence                                                                            1122333333322222


Q ss_pred             eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          221 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .-   ....|..+|+.++|++||.+|+..|.||.+.+-.|.
T Consensus       335 ~~---v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe  372 (434)
T KOG1009|consen  335 AV---VDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFE  372 (434)
T ss_pred             EE---EeeeeeeeecceeecCCCcEEEEeccCCceEEEEEc
Confidence            11   123488899999999999999999999998876653

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.88  E-value=1.1e-20  Score=159.60  Aligned_cols=247  Identities=21%  Similarity=0.327  Sum_probs=183.3

Q ss_pred             ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccc-cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      +|+|..|| .++++|+..|.+.+||++...       +.- ....|.+.|....|.|. ...+++++.|+++++|=.+++
T Consensus       249 slSFrtDG~p~las~~~~G~m~~wDLe~kk-------l~~v~~nah~~sv~~~~fl~~-epVl~ta~~DnSlk~~vfD~~  320 (910)
T KOG1539|consen  249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKK-------LINVTRNAHYGSVTGATFLPG-EPVLVTAGADNSLKVWVFDSG  320 (910)
T ss_pred             EEEeccCCCeeEEeccCCceEEEEEcCCCe-------eeeeeeccccCCcccceecCC-CceEeeccCCCceeEEEeeCC
Confidence            57899899 567788888999999997632       222 33478888999999884 568999999999999955543


Q ss_pred             eeE-EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc------------------------------
Q 024451           80 LRT-SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS------------------------------  128 (267)
Q Consensus        80 ~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~------------------------------  128 (267)
                      .-. ..+  +.-.||..+..++.+-..+++.+++++.|++.+.+++....                              
T Consensus       321 dg~pR~L--R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i  398 (910)
T KOG1539|consen  321 DGVPRLL--RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI  398 (910)
T ss_pred             CCcchhe--eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence            211 111  22358999999999988888889999999988888642100                              


Q ss_pred             ---------------------------------cce-EEeeccc------cceeEEEEecCCCEEEEeeCCCcEEEEeCC
Q 024451          129 ---------------------------------RAV-RTFHGHE------GDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  168 (267)
Q Consensus       129 ---------------------------------~~~-~~~~~~~------~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  168 (267)
                                                       +.. +....+.      ..+.+++.+++|++.+.|...|.|-+|++.
T Consensus       399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ  478 (910)
T KOG1539|consen  399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ  478 (910)
T ss_pred             eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence                                             000 0111122      457788999999999999999999999999


Q ss_pred             CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeee--------------------------
Q 024451          169 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN--------------------------  222 (267)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~--------------------------  222 (267)
                      +|-....+.+  ...+..+|..++.+..++.+++++.+|.+.+||.........                          
T Consensus       479 SGi~r~sf~~--~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf  556 (910)
T KOG1539|consen  479 SGIHRKSFGD--SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDF  556 (910)
T ss_pred             cCeeeccccc--CccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCce
Confidence            8865544421  123456799999999999999999999999999754331110                          


Q ss_pred             -----------cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          223 -----------LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       223 -----------~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                                 +.+...+|...|+.++|||||++|++++.|++|++||+
T Consensus       557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence                       01112358999999999999999999999999999997

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4.7e-21  Score=146.88  Aligned_cols=237  Identities=19%  Similarity=0.323  Sum_probs=163.0

Q ss_pred             CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451           10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGLRTSVFGGE   88 (267)
Q Consensus        10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   88 (267)
                      +.++++...|+|++||....       ...+.+++|...+.-++|... ....+.+|+.||+||+||+++..+...+...
T Consensus        41 ~~vav~lSngsv~lyd~~tg-------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG-------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccch-------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence            45888899999999997652       256677888888888888764 3346889999999999999887655444321


Q ss_pred             cccCCc-cceEEEEEeCCCCeEEEEec----CCCeEEEEeCCCcccceEEe-eccccceeEEEEec-CCCEEEEeeCCCc
Q 024451           89 FQSGHT-ADVLSVSISGSNSRMFVSGS----CDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFP-DGNRFGTGSDDGT  161 (267)
Q Consensus        89 ~~~~~~-~~i~~~~~~~~~~~~~~s~~----~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~d~~  161 (267)
                         ++. ....+++..- ..+++++|.    .+-.|.+||+|...++++.+ ..|.+.|+++.|+| +.+.|++|+.||-
T Consensus       114 ---~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL  189 (376)
T KOG1188|consen  114 ---QQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL  189 (376)
T ss_pred             ---CCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce
Confidence               233 3344554432 455666653    46689999999766645554 57999999999999 4689999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCcccee--------------------
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVV--------------------  220 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~--------------------  220 (267)
                      |.+||++...+...+.  +..+....|..+.|..++ ..|.+-+..+...+|++..+...                    
T Consensus       190 vnlfD~~~d~EeDaL~--~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~d  267 (376)
T KOG1188|consen  190 VNLFDTKKDNEEDALL--HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCD  267 (376)
T ss_pred             EEeeecCCCcchhhHH--HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhh
Confidence            9999997543221111  112333447777777665 34556666777777765322100                    


Q ss_pred             --------------------------------------eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          221 --------------------------------------LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       221 --------------------------------------~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                                                            .....++..|..-|.++.|.-.+.++.||+.||.+.+|.
T Consensus       268 Y~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  268 YVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             heeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence                                                  011122334566677788877788999999999999998

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.1e-19  Score=133.72  Aligned_cols=245  Identities=16%  Similarity=0.233  Sum_probs=171.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCC----CCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPT----DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT   77 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~----~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~   77 (267)
                      +-+++|.+++|+.|..+|+|.+..+..-.    +..++.+ .-..++|.++|+.++|..   .+|++|+ ||.|+=|..+
T Consensus        15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~-iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~   89 (325)
T KOG0649|consen   15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLK-IVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWN   89 (325)
T ss_pred             HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcc-eeeccccCCCeeeeeeeh---hheeecc-CceEEEeeeh
Confidence            34689999999999999999999986532    2233333 234589999999999973   4677665 5999988765


Q ss_pred             CCeeE--------EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC
Q 024451           78 TGLRT--------SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD  149 (267)
Q Consensus        78 ~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  149 (267)
                      .....        ...+.+....--..|+++.+.|..+.++ .++.|+.++-||++. .+..+.+++|.+-++++.-...
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~-G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLED-GRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecC-CEEEEEEcCCcceeeeeeeccc
Confidence            32210        0111111011234688888887776654 556899999999985 4567889999999999998666


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCC-----CCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc
Q 024451          150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-----EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG  224 (267)
Q Consensus       150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~  224 (267)
                      ...+.+|++||++|+||++++++...+-....++     ...+|.++  ..+..++++|. .-.+.+|.++..+....+.
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGg-Gp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGG-GPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecC-CCceeEEeccCCCceEEEe
Confidence            7789999999999999999998876553221111     11234444  45677999885 4578999998776654432


Q ss_pred             cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          225 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       225 ~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                           ...++.-+.|-  ...+++++..+.+.-|.++|-
T Consensus       245 -----ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  245 -----IPARVHLVDFV--DDCVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             -----cccceeEeeee--cceEEEeccccceeeeeeccE
Confidence                 33456667665  356777888888999988764

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.87  E-value=3.8e-20  Score=156.34  Aligned_cols=227  Identities=17%  Similarity=0.307  Sum_probs=175.6

Q ss_pred             cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCcc
Q 024451           16 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA   95 (267)
Q Consensus        16 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~   95 (267)
                      -.+..++.|+....+.....++. ..++.-...+++|..++.+ ++.+.|+..|+|-+||++++.....|..  .+.|..
T Consensus       419 ~~~~~~~tW~~~n~~~G~~~L~~-~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~sf~~--~~ah~~  494 (910)
T KOG1539|consen  419 KGKRSAYTWNFRNKTSGRHVLDP-KRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKSFGD--SPAHKG  494 (910)
T ss_pred             cCcceEEEEeccCcccccEEecC-ccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeeccccc--CccccC
Confidence            34667889998764422211111 1122234678889988875 6888999999999999999987776642  247999


Q ss_pred             ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEE
Q 024451           96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV  175 (267)
Q Consensus        96 ~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  175 (267)
                      .|..++.+.. ++.+++++.+|.+++||.+. ......+. -...+..+.++.....++.+..|-.|+++|..+.+....
T Consensus       495 ~V~gla~D~~-n~~~vsa~~~Gilkfw~f~~-k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~  571 (910)
T KOG1539|consen  495 EVTGLAVDGT-NRLLVSAGADGILKFWDFKK-KVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE  571 (910)
T ss_pred             ceeEEEecCC-CceEEEccCcceEEEEecCC-cceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence            9999998854 56789999999999999874 22344443 245678889998888999999999999999988766555


Q ss_pred             EEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC-Cc
Q 024451          176 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TN  254 (267)
Q Consensus       176 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-g~  254 (267)
                      +..     +...|++++|||+|++|++++.|+.|++||+.+...+..+     .-..+..++.|+|+|.+||+...| .-
T Consensus       572 f~g-----h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-----~vd~~~~sls~SPngD~LAT~Hvd~~g  641 (910)
T KOG1539|consen  572 FWG-----HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-----LVDSPCTSLSFSPNGDFLATVHVDQNG  641 (910)
T ss_pred             hhc-----cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-----ecCCcceeeEECCCCCEEEEEEecCce
Confidence            433     3346999999999999999999999999999998877544     235678999999999999999998 55


Q ss_pred             EEEEe
Q 024451          255 LKIWA  259 (267)
Q Consensus       255 i~~w~  259 (267)
                      |.+|.
T Consensus       642 IylWs  646 (910)
T KOG1539|consen  642 IYLWS  646 (910)
T ss_pred             EEEEE
Confidence            99995

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=8.8e-20  Score=155.62  Aligned_cols=227  Identities=14%  Similarity=0.233  Sum_probs=170.5

Q ss_pred             eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEE
Q 024451            5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV   84 (267)
Q Consensus         5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~   84 (267)
                      ....+.++++++.+++|.+|......+       ...+..-+-++.+++|+.++ .+++.||.|-.|++-++........
T Consensus        62 ia~~s~~f~~~s~~~tv~~y~fps~~~-------~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~  133 (933)
T KOG1274|consen   62 IACYSNHFLTGSEQNTVLRYKFPSGEE-------DTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKV  133 (933)
T ss_pred             EeecccceEEeeccceEEEeeCCCCCc-------cceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchhee
Confidence            345667899999999999998876432       22344556788999998865 5899999999999999987655544


Q ss_pred             eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-------cc-ccceeEEEEecCCCEEEEe
Q 024451           85 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------GH-EGDVNTVKFFPDGNRFGTG  156 (267)
Q Consensus        85 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-------~~-~~~i~~~~~~~~~~~l~~~  156 (267)
                      +     .+|+.+|.++.++| .+.++++.+.||.|++||+.... ....+.       .. ...+..++|+|++..++..
T Consensus       134 l-----rgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~  206 (933)
T KOG1274|consen  134 L-----RGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP  206 (933)
T ss_pred             e-----cccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence            4     47999999999996 56789999999999999986432 221111       11 3456789999999899999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451          157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  236 (267)
Q Consensus       157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  236 (267)
                      +.|+.|++|+..+......+...+   ....+..+.|+|+|.|||+++.||.|.|||.++-+.        ......|.+
T Consensus       207 ~~d~~Vkvy~r~~we~~f~Lr~~~---~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--------~~~~~~Vc~  275 (933)
T KOG1274|consen  207 PVDNTVKVYSRKGWELQFKLRDKL---SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER--------HEFKRAVCC  275 (933)
T ss_pred             ccCCeEEEEccCCceeheeecccc---cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh--------ccccceeEE
Confidence            999999999998876554443322   223488999999999999999999999999876211        123468999


Q ss_pred             EEECCCCCeEEEeECCCcEEE
Q 024451          237 LGLSADGSALCTGSWDTNLKI  257 (267)
Q Consensus       237 ~~~~p~~~~l~sgs~dg~i~~  257 (267)
                      ++|.|+.+-+-.-...|..-+
T Consensus       276 ~aw~p~~n~it~~~~~g~~~~  296 (933)
T KOG1274|consen  276 EAWKPNANAITLITALGTLGV  296 (933)
T ss_pred             EecCCCCCeeEEEeecccccc
Confidence            999999886654444444333

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=6.7e-21  Score=152.70  Aligned_cols=241  Identities=19%  Similarity=0.261  Sum_probs=174.9

Q ss_pred             eeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++|+... -..++.+.|..+++|.-..   +.+.+|+.+...+.+  -+|++..... .++++|+..+.|+|||++....
T Consensus        40 ~~w~~~n~lvvas~~gdk~~~~~~K~g---~~~~Vp~~~k~~gd~--~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl~  113 (673)
T KOG4378|consen   40 FNWQRRNFLVVASMAGDKVMRIKEKDG---KTPEVPRVRKLTGDN--AFCVACASQS-LYEISGGQSGCVKIWDLRAKLI  113 (673)
T ss_pred             eeccccceEEEeecCCceeEEEecccC---CCCccceeeccccch--HHHHhhhhcc-eeeeccCcCceeeehhhHHHHH
Confidence            4565544 3445566789999996443   244566666666653  3455444433 6899999999999999974322


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCC-EEEEeeCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGN-RFGTGSDD  159 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~d  159 (267)
                           .++..+|+..|+++.++. .+.++++++..|.|.|..+....+ ...+. +.+..|.-+.|+|..+ +|.+++.+
T Consensus       114 -----hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsvRll~ys~skr~lL~~asd~  186 (673)
T KOG4378|consen  114 -----HRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSVRLLRYSPSKRFLLSIASDK  186 (673)
T ss_pred             -----hhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCcc-ccceecCCCCeEEEeecccccceeeEeeccC
Confidence                 234468999999999985 567899999999999999875432 33343 2245567899999765 46678999


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      |.|.+||+........+...    +..+...+||+|.+. +|++-+.|..|++||....+....+     ....+..+++
T Consensus       187 G~VtlwDv~g~sp~~~~~~~----HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-----~y~~Plstva  257 (673)
T KOG4378|consen  187 GAVTLWDVQGMSPIFHASEA----HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-----TYSHPLSTVA  257 (673)
T ss_pred             CeEEEEeccCCCcccchhhh----ccCCcCcceecCCccceEEEecccceEEEeeccccccccee-----eecCCcceee
Confidence            99999999765554443322    345678999999776 5566789999999998765544322     2345789999


Q ss_pred             ECCCCCeEEEeECCCcEEEEecCceEe
Q 024451          239 LSADGSALCTGSWDTNLKIWAFGGYRR  265 (267)
Q Consensus       239 ~~p~~~~l~sgs~dg~i~~w~~~~~~~  265 (267)
                      |+|+|.+|+.|+..|.|..||+.+..-
T Consensus       258 f~~~G~~L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  258 FSECGTYLCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             ecCCceEEEeecCCceEEEEecccCCC
Confidence            999999999999999999999977653

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.87  E-value=5.1e-20  Score=138.49  Aligned_cols=234  Identities=19%  Similarity=0.278  Sum_probs=162.3

Q ss_pred             eEEEeecCCCCCCCC--CCccccccc-CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-EEEeCCccccCCcc
Q 024451           20 VCSIFNLNSPTDKDG--NLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTA   95 (267)
Q Consensus        20 ~v~~w~~~~~~~~~~--~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~   95 (267)
                      ...||.+..+..+..  .+.+...+. .|-+.|.|+.|.|+.+ .+++- .|+.|.+|+++.... ...+.......+..
T Consensus        94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~-klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~  171 (370)
T KOG1007|consen   94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD-KLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRH  171 (370)
T ss_pred             eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC-eeEEe-ccCceEEEEcccCcchheeecccccccccc
Confidence            366999877544321  122333443 5567899999999765 45544 489999999987654 23332222234666


Q ss_pred             ceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEEEeeCCCcEEEEeCCCCeee
Q 024451           96 DVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQL  173 (267)
Q Consensus        96 ~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~  173 (267)
                      ..++-+|+|- +..++ ....|++++.||+++..+....-.+|...|..+.|.|+.. ++++|+.||.|+|||++..+..
T Consensus       172 ~ftsg~WspHHdgnqv-~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p  250 (370)
T KOG1007|consen  172 SFTSGAWSPHHDGNQV-ATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP  250 (370)
T ss_pred             eecccccCCCCccceE-EEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence            7788889874 34444 4566889999999976665566678999999999999865 5789999999999999876543


Q ss_pred             EEEEeecCCCCCCcEEEEEEccC-CCEEEEEEeCCeEEEEeCCccc------------------------eeee-ccccc
Q 024451          174 QVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAK------------------------VVLN-LGSLQ  227 (267)
Q Consensus       174 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~------------------------~~~~-~~~~~  227 (267)
                      ..    ....+.-++.++.|+|. .+.+++|++|..|.+|-...--                        ++.. .....
T Consensus       251 v~----el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty  326 (370)
T KOG1007|consen  251 VQ----ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY  326 (370)
T ss_pred             cc----ccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence            21    22334558999999986 5678899999999999642110                        0000 00011


Q ss_pred             CCccceEEEEEECC-CCCeEEEeECCCcEEEEec
Q 024451          228 NSHEGRITCLGLSA-DGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       228 ~~~~~~v~~~~~~p-~~~~l~sgs~dg~i~~w~~  260 (267)
                      ..|++.|.+++||. |.=++|+-|.||++.|=..
T Consensus       327 dehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  327 DEHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             cccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence            35899999999985 4446789999999988653

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=6.1e-21  Score=151.28  Aligned_cols=213  Identities=17%  Similarity=0.187  Sum_probs=158.3

Q ss_pred             ccCCeeeEEEEEEecCCC-eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEE
Q 024451           42 LSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR  120 (267)
Q Consensus        42 ~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~  120 (267)
                      .+-|.+.|++++|+|... ..+++|..-|.|-+||+.++++...- ......|...|.++.|+|.+..++++.+.||+|+
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~-v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR  260 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG-VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR  260 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc-eEEeccCCccccceEecCCChhheeeeccCceee
Confidence            445788999999999877 67788888999999999643221100 0111468999999999999999999999999999


Q ss_pred             EEeCCCccc-ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-
Q 024451          121 LWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-  198 (267)
Q Consensus       121 iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-  198 (267)
                      .-|++.... .+..+......+..+.|+.+...++.+..=|...+||+++.+......    ..+...|.+++++|... 
T Consensus       261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~----~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL----RLHKKKITSVALNPVCPW  336 (498)
T ss_pred             eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh----hhhhcccceeecCCCCch
Confidence            999874321 122222234556788888877777778877899999999876422111    22233799999999876 


Q ss_pred             EEEEEEeCCeEEEEeCCccceeee-cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          199 LLFAGYSNGDCYVWDTLLAKVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       199 ~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      +|++++.|+..+|||++....-.. +.+ ...|...|.++.|||.+.-|++.+.|.+|+||+.
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~ls-t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLS-TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCccee-cccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            678899999999999875432221 111 2468999999999999888999999999999985

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=1.7e-19  Score=149.76  Aligned_cols=254  Identities=19%  Similarity=0.246  Sum_probs=178.3

Q ss_pred             ceeeCCCCC---eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451            2 TCAFSPTGQ---SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         2 ~~~~~~~g~---~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      |.+|-|+.+   .+++|+.|+.|.+|.+....     ......+.+|...+.|+.-.+.   .......|+++.+||.+.
T Consensus        59 C~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~-----~~~i~~~~g~~~~~~cv~a~~~---~~~~~~ad~~v~vw~~~~  130 (764)
T KOG1063|consen   59 CVHWLPTSEIVAEMVSGDSDGRVILWKLRDEY-----LIKIYTIQGHCKECVCVVARSS---VMTCKAADGTVSVWDKQQ  130 (764)
T ss_pred             EEEEcccccccceEEEccCCCcEEEEEEeehh-----eEEEEeecCcceeEEEEEeeee---EEEeeccCceEEEeecCC
Confidence            445666666   79999999999999987321     2345567788888888765442   222337899999999944


Q ss_pred             CeeEE--E-----------------------------------eCC--------ccccCCccceEEEEEeCCC--CeEEE
Q 024451           79 GLRTS--V-----------------------------------FGG--------EFQSGHTADVLSVSISGSN--SRMFV  111 (267)
Q Consensus        79 ~~~~~--~-----------------------------------~~~--------~~~~~~~~~i~~~~~~~~~--~~~~~  111 (267)
                      .+...  .                                   +..        ....||.+.|.+++|....  .-+++
T Consensus       131 ~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~la  210 (764)
T KOG1063|consen  131 DEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLA  210 (764)
T ss_pred             CceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEE
Confidence            33000  0                                   000        0124799999999887543  46788


Q ss_pred             EecCCCeEEEEeCCCcc----------------c----ce----------EEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451          112 SGSCDSTARLWDTRVAS----------------R----AV----------RTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus       112 s~~~d~~i~iwd~~~~~----------------~----~~----------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      +++.|..||||.+....                .    ..          ..+.||.+.|+++.|+|.+..|.+++.|++
T Consensus       211 S~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDks  290 (764)
T KOG1063|consen  211 SSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKS  290 (764)
T ss_pred             ecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcc
Confidence            99999999999653211                0    00          123489999999999999989999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCC--CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          162 CRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      +.+|...+..-+-.-.-..+.  +........-|+|+++.+++-+..|..++|-.+... .........+|.+.|..++|
T Consensus       291 miiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~-~w~~~~~iSGH~~~V~dv~W  369 (764)
T KOG1063|consen  291 MIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT-FWTQEPVISGHVDGVKDVDW  369 (764)
T ss_pred             eEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc-ceeeccccccccccceeeee
Confidence            999998765322111111111  122345778899999999999999999999832221 11222234689999999999


Q ss_pred             CCCCCeEEEeECCCcEEEEecCceE
Q 024451          240 SADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      +|.|+||++.|.|.+-|+|+-.|.+
T Consensus       370 ~psGeflLsvs~DQTTRlFa~wg~q  394 (764)
T KOG1063|consen  370 DPSGEFLLSVSLDQTTRLFARWGRQ  394 (764)
T ss_pred             cCCCCEEEEeccccceeeecccccc
Confidence            9999999999999999999866543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=2.4e-19  Score=140.06  Aligned_cols=207  Identities=18%  Similarity=0.269  Sum_probs=153.7

Q ss_pred             CceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            1 MTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         1 ~~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      ++++|+| +...||+||.|.+|.||+...+.-..........+.||...|..++|+|.-.+.|+|++.|++|.|||+.++
T Consensus        85 LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg  164 (472)
T KOG0303|consen   85 LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG  164 (472)
T ss_pred             cccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC
Confidence            4578887 447899999999999999876432222223455788999999999999987788999999999999999999


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccc-eeEEEEecCCCEEEEee-
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFPDGNRFGTGS-  157 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~-  157 (267)
                      +....+      .|.+.|.++.|+. ++.++++.+.|+.|||||.+.+. .+..-.+|.+. -..+.|-.+++.+.+|. 
T Consensus       165 eali~l------~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~-~v~e~~~heG~k~~Raifl~~g~i~tTGfs  236 (472)
T KOG0303|consen  165 EALITL------DHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGT-VVSEGVAHEGAKPARAIFLASGKIFTTGFS  236 (472)
T ss_pred             ceeeec------CCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCc-EeeecccccCCCcceeEEeccCceeeeccc
Confidence            866554      3999999999995 56788999999999999998644 45445677653 45677888888666664 


Q ss_pred             --CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE-EEEEeCCeEEEEeCCccc
Q 024451          158 --DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLLAK  218 (267)
Q Consensus       158 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i~i~d~~~~~  218 (267)
                        .++.+-+||...-+....+.. -..+  ..|.-=-|+++...+ ++|-.|+.|+-|......
T Consensus       237 r~seRq~aLwdp~nl~eP~~~~e-lDtS--nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  237 RMSERQIALWDPNNLEEPIALQE-LDTS--NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cccccceeccCcccccCcceeEE-eccC--CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence              578999999876554322221 1111  123333467887766 556689999999875543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.9e-19  Score=155.79  Aligned_cols=247  Identities=17%  Similarity=0.273  Sum_probs=169.3

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCC-----CcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGN-----LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      |..++++++.||.||||+--....++.+     .++...+.+..+.---+.|..+. .+|+++|.-..|+|||...+...
T Consensus      1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred             chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeE
Confidence            4578999999999999974322111110     11111122222111235676655 46777777889999999987666


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc--ceEEeeccccc--eeEEEEecCCC-EEEEee
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGD--VNTVKFFPDGN-RFGTGS  157 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~-~l~~~~  157 (267)
                      .-++.    +.+..++++..+..++.++++|-.||.|++||.+....  .+...+.|+..  |..+.+.+.|- .+++|+
T Consensus      1201 ~diP~----~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs 1276 (1387)
T KOG1517|consen 1201 ADIPY----GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS 1276 (1387)
T ss_pred             eeccc----CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec
Confidence            55442    34455677777666678999999999999999986543  56667788877  99999988664 599999


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeecCCCCCC-cEEEEEEccCCCEEEEEEeCCeEEEEeCCccce--eeecccccCCccceE
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQHGENEIP-HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLGSLQNSHEGRI  234 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v  234 (267)
                      .||.|++||++.. ....+.......+.+ ..+++..+++...+|+|+. +.|.||++.....  +.....+...-.+.+
T Consensus      1277 ~~G~I~~~DlR~~-~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1277 QDGDIQLLDLRMS-SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred             cCCeEEEEecccC-cccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCc
Confidence            9999999999974 222222211111112 4789999999999999988 9999999753321  111111212234567


Q ss_pred             EEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          235 TCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       235 ~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .|++|+|..-+||.|+.|.+|.||.-.
T Consensus      1355 scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             ceeeecchhHhhhhccCCceEEEeecC
Confidence            999999999999999999999999743

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.85  E-value=5e-19  Score=149.41  Aligned_cols=252  Identities=20%  Similarity=0.213  Sum_probs=172.1

Q ss_pred             CceeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCC-eeEEEeeCCCeEEEEeCCC
Q 024451            1 MTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITT   78 (267)
Q Consensus         1 ~~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~v~iwd~~~   78 (267)
                      ++++|+|. ..+++.|..+|+|.+||+.....+. ..+.......|..++..+.|.++.. .-+++++.||.|..|+++.
T Consensus       246 ~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~  324 (555)
T KOG1587|consen  246 TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDM  324 (555)
T ss_pred             eEEEeccCCcceEEeeccCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccc
Confidence            47889974 4788889999999999997643211 2234445567999999999975432 3489999999999998763


Q ss_pred             Cee-EEEeCCcc------ccCCccceEEEEEeCCCCeEEEEecCCCeEEEEe---CCCcc----cceEEeeccccceeEE
Q 024451           79 GLR-TSVFGGEF------QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD---TRVAS----RAVRTFHGHEGDVNTV  144 (267)
Q Consensus        79 ~~~-~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd---~~~~~----~~~~~~~~~~~~i~~~  144 (267)
                      -.. ........      .......+.+++|.+.+...|+.|+.+|.|.-=+   .+...    +....+..|.++|+++
T Consensus       325 l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v  404 (555)
T KOG1587|consen  325 LSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAV  404 (555)
T ss_pred             cccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEee
Confidence            211 11110010      0122345678889888888899999999987632   22111    1233556788999999


Q ss_pred             EEecCCC-EEEEeeCCCcEEEEeCC-CCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceee
Q 024451          145 KFFPDGN-RFGTGSDDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVL  221 (267)
Q Consensus       145 ~~~~~~~-~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~  221 (267)
                      .++|-.. .|.+++ |.+++||... ....+. .+.    .....+.+++|||... .++++..+|.|.+||+.......
T Consensus       405 ~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~-~~~----~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P  478 (555)
T KOG1587|consen  405 SRNPFYPKNFLSVG-DWTVRIWSEDVIASPLL-SLD----SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP  478 (555)
T ss_pred             ecCCCccceeeeec-cceeEeccccCCCCcch-hhh----hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence            9999654 455555 9999999977 333221 111    1223589999999876 56667789999999986543211


Q ss_pred             ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                       ... +..+......+.|+++|+.|++|...|++.+|++.
T Consensus       479 -v~s-~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  479 -VLS-QKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             -ccc-ccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence             111 12235667888899999999999999999999974

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.84  E-value=2.7e-19  Score=148.36  Aligned_cols=232  Identities=16%  Similarity=0.279  Sum_probs=164.1

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .++|.|||..|+.+-.+ .+.+||.....       ...++++|++-|+||+|+.+++ .++||+.|+.|.+|+..-.- 
T Consensus        17 d~afkPDGsqL~lAAg~-rlliyD~ndG~-------llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG-   86 (1081)
T KOG1538|consen   17 DIAFKPDGTQLILAAGS-RLLVYDTSDGT-------LLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEG-   86 (1081)
T ss_pred             eeEECCCCceEEEecCC-EEEEEeCCCcc-------cccccccccceEEEEEEccCCc-eeccCCCceeEEEecccccc-
Confidence            57899999888887655 69999986532       6778999999999999999764 79999999999999864321 


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                        ++    ...|.+.|.++.|+|-+ +.+++++-. ..-+|...+  +.+...+ ....|.+++|..||.+++.|-.||+
T Consensus        87 --~L----kYSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~q--K~V~K~k-ss~R~~~CsWtnDGqylalG~~nGT  155 (1081)
T KOG1538|consen   87 --IL----KYSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQ--KSVSKHK-SSSRIICCSWTNDGQYLALGMFNGT  155 (1081)
T ss_pred             --ee----eeccCCeeeEeecCchH-HHhhhcchh-hccccChhh--hhHHhhh-hheeEEEeeecCCCcEEEEeccCce
Confidence              22    23699999999999754 556776654 456897653  2222221 2356889999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCC--------------------------------------------CCcEEEEEEccCC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENE--------------------------------------------IPHVTSIAFSISG  197 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~--------------------------------------------~~~v~~~~~s~~~  197 (267)
                      |.+-+-. +++...+....+.++                                            .....++.+-++|
T Consensus       156 IsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NG  234 (1081)
T KOG1538|consen  156 ISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNG  234 (1081)
T ss_pred             EEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCC
Confidence            9987532 222211111111110                                            0012344555678


Q ss_pred             CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          198 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       198 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      .+++.|+.|+.+++|.... -.+-..    ......|++++..|++++.+.|+.||+|.-|.+
T Consensus       235 Ey~LiGGsdk~L~~fTR~G-vrLGTv----g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  235 EYILLGGSDKQLSLFTRDG-VRLGTV----GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             cEEEEccCCCceEEEeecC-eEEeec----cccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            8888888899898887432 222122    224568999999999999999999999988864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=4.7e-19  Score=140.87  Aligned_cols=202  Identities=17%  Similarity=0.226  Sum_probs=154.0

Q ss_pred             eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC
Q 024451           46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  125 (267)
Q Consensus        46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~  125 (267)
                      .+.|++++|+|. ...+++|+.|++++||.+.-.....+....   -...+|.+.+|.+.+...+++++....+..||+.
T Consensus       213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~---l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIH---LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             cCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeee---eccCccceeeecCCCceEEEecccceEEEEeecc
Confidence            467999999996 468999999999999988643222111111   1345788888988766688999999999999987


Q ss_pred             Cccc-ceEEeeccc-cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE
Q 024451          126 VASR-AVRTFHGHE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG  203 (267)
Q Consensus       126 ~~~~-~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g  203 (267)
                      .... .+....++. ..+.....+|++++++..|..|.|.+....+++.+..+..      .+.+..++|+.++..|++.
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki------eG~v~~~~fsSdsk~l~~~  362 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI------EGVVSDFTFSSDSKELLAS  362 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee------ccEEeeEEEecCCcEEEEE
Confidence            4321 223333443 3567888999999999999999999999888766544432      2358999999999999999


Q ss_pred             EeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          204 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       204 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      +.+|+|++||+.+...+..+.   ....-.-++++.+++|.|||+||..|.|.||+.
T Consensus       363 ~~~GeV~v~nl~~~~~~~rf~---D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~  416 (514)
T KOG2055|consen  363 GGTGEVYVWNLRQNSCLHRFV---DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG  416 (514)
T ss_pred             cCCceEEEEecCCcceEEEEe---ecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence            999999999999887665442   112223467888999999999999999999984

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.83  E-value=3e-19  Score=132.72  Aligned_cols=243  Identities=14%  Similarity=0.240  Sum_probs=171.6

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccccc-CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ..|..+++ |.+|..-|.|.+|++....       ....++ .|...|+.++..|++  .+.+-+.|..+.+|++.-...
T Consensus        20 ~~fqa~~r-L~sg~~~G~V~~w~lqt~r-------~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~   89 (323)
T KOG0322|consen   20 VLFQANER-LMSGLSVGIVKMWVLQTER-------DLPLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAF   89 (323)
T ss_pred             hhhccchh-hhcccccceEEEEEeecCc-------cchhhhhhccceeeceeecCCc--chhhcCCCceEEEEEccCcce
Confidence            34555555 9999999999999997632       223344 467889999988863  588999999999999865211


Q ss_pred             EEE---------------------------eCCc---------------------cccCCccceEEEEEeC--CCCeEEE
Q 024451           82 TSV---------------------------FGGE---------------------FQSGHTADVLSVSISG--SNSRMFV  111 (267)
Q Consensus        82 ~~~---------------------------~~~~---------------------~~~~~~~~i~~~~~~~--~~~~~~~  111 (267)
                      ..+                           +..+                     ...+..+.+.+..+..  ...-+++
T Consensus        90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll  169 (323)
T KOG0322|consen   90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL  169 (323)
T ss_pred             EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence            110                           0000                     0012233344433221  1223567


Q ss_pred             EecCCCeEEEEeCCCcc---------cceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCC
Q 024451          112 SGSCDSTARLWDTRVAS---------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  182 (267)
Q Consensus       112 s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  182 (267)
                      +|..+|.+-+||+..+.         +.......|..+|.++.|.+..+.=++|+.+..+..|.+........+.. ...
T Consensus       170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~-e~~  248 (323)
T KOG0322|consen  170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK-EIT  248 (323)
T ss_pred             EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc-eEE
Confidence            78899999999987542         22334457889999999988766778888899999999864311111111 112


Q ss_pred             CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       183 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      .+.+.+..+.+-||++.+|+++-||.+++|..++...+.-+    +.|.+.|.+++|+|+.+.+|.+|.|++|.+|++
T Consensus       249 lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL----kyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  249 LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL----KYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh----hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            23356888999999999999999999999999887765433    579999999999999999999999999999985

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.7e-18  Score=135.48  Aligned_cols=253  Identities=17%  Similarity=0.224  Sum_probs=175.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++.|+.++++|++||.|..+++|+++...-..-..|....-..|.+.|+|+.|... .+.+++|+.+++|.+-|+++.+.
T Consensus        61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~VI~HDiEt~qs  139 (609)
T KOG4227|consen   61 ALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGTVIKHDIETKQS  139 (609)
T ss_pred             eeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCCcceeEeeeccccee
Confidence            46799999999999999999999986532111112233334567899999999874 46899999999999999999877


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee--ccccceeEEEEecC-CCEEEEeeC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPD-GNRFGTGSD  158 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~l~~~~~  158 (267)
                      +.++.-   ....+.|..+..+|. +..|++.+.++.|.+||.+....++..+.  ......+++.|+|. ..++++.+.
T Consensus       140 i~V~~~---~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~  215 (609)
T KOG4227|consen  140 IYVANE---NNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSE  215 (609)
T ss_pred             eeeecc---cCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccc
Confidence            666531   123447888888876 67889999999999999985443333322  22345788999995 467788888


Q ss_pred             CCcEEEEeCCCCeeeE------------------------------------------------EEEeecCCC---CCCc
Q 024451          159 DGTCRLFDIRTGHQLQ------------------------------------------------VYYQQHGEN---EIPH  187 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~------------------------------------------------~~~~~~~~~---~~~~  187 (267)
                      .+-+.+||.+..+...                                                ++...+..+   ....
T Consensus       216 ~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T  295 (609)
T KOG4227|consen  216 TGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKT  295 (609)
T ss_pred             cCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeee
Confidence            8999999987532100                                                000000000   1112


Q ss_pred             EEEEEEccCCCEEEEEEeCCeEEEEeCCccc-------------------eeeecccccCCccceEEEEEECCCCCeEEE
Q 024451          188 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAK-------------------VVLNLGSLQNSHEGRITCLGLSADGSALCT  248 (267)
Q Consensus       188 v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s  248 (267)
                      +.+++|.-+. -+++|+.+=.|++|.+....                   .+..-....++|.+.+..+.|+|...+|++
T Consensus       296 ~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~S  374 (609)
T KOG4227|consen  296 IKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVS  374 (609)
T ss_pred             eeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEec
Confidence            3455555443 38889888899999753211                   011111123578888999999999999999


Q ss_pred             eECCCcEEEEec
Q 024451          249 GSWDTNLKIWAF  260 (267)
Q Consensus       249 gs~dg~i~~w~~  260 (267)
                      .+-.+.++||.-
T Consensus       375 SGVE~~~KlWS~  386 (609)
T KOG4227|consen  375 SGVENSFKLWSD  386 (609)
T ss_pred             cchhhheecccc
Confidence            999999999963

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.83  E-value=6.3e-19  Score=132.77  Aligned_cols=244  Identities=18%  Similarity=0.324  Sum_probs=171.7

Q ss_pred             CeEEEccC----CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCC----eeEEEeeCCCeEEEEeCCCCee
Q 024451           10 QSVACGGL----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED----THLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus        10 ~~l~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      -+|+.|+.    .+.|.+-.+....   ++... ...-.|..+++.+.|.|+..    .+||+.  +..+|+|.+.....
T Consensus        60 ~rla~gS~~Ee~~Nkvqiv~ld~~s---~e~~~-~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~  133 (364)
T KOG0290|consen   60 FRLAVGSFIEEYNNKVQIVQLDEDS---GELVE-DANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEES  133 (364)
T ss_pred             eeEEEeeeccccCCeeEEEEEccCC---Cceec-cCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCC
Confidence            34555552    4556666554321   11111 12247889999999999753    345443  44799999874321


Q ss_pred             EE----EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc--ccceEEeeccccceeEEEEecCC-CEEE
Q 024451           82 TS----VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVNTVKFFPDG-NRFG  154 (267)
Q Consensus        82 ~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~-~~l~  154 (267)
                      ..    .+.......+..++++..|+..+.+++.+.+-|-+..|||++.+  .....++-+|.++|+.++|...+ +.||
T Consensus       134 ~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FA  213 (364)
T KOG0290|consen  134 RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFA  213 (364)
T ss_pred             ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEE
Confidence            11    22222334567789999999888899999999999999999864  22466788999999999998853 6899


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEE-eCCeEEEEeCCccceeeecccccCCccc
Q 024451          155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEG  232 (267)
Q Consensus       155 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~  232 (267)
                      +.|.||.+|+||++.......+++..  ....+...++|+++.. ++|+=. ....|.|.|++....+.  ..+ ..|.+
T Consensus       214 SvgaDGSvRmFDLR~leHSTIIYE~p--~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv--a~L-~~H~a  288 (364)
T KOG0290|consen  214 SVGADGSVRMFDLRSLEHSTIIYEDP--SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV--ARL-RNHQA  288 (364)
T ss_pred             EecCCCcEEEEEecccccceEEecCC--CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce--ehh-hcCcc
Confidence            99999999999999866554444322  2234678899987665 455533 34689999987665432  222 57999


Q ss_pred             eEEEEEECCC-CCeEEEeECCCcEEEEecCceE
Q 024451          233 RITCLGLSAD-GSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       233 ~v~~~~~~p~-~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      .|+.++|.|. ...|++|+.|..+.+||+..-.
T Consensus       289 ~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  289 SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             cccceEecCCCCceeeecCCcceEEEEeccccc
Confidence            9999999996 5689999999999999986543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2.3e-18  Score=131.11  Aligned_cols=199  Identities=18%  Similarity=0.285  Sum_probs=147.1

Q ss_pred             EEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc
Q 024451           49 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS  128 (267)
Q Consensus        49 v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~  128 (267)
                      -.||+|++-+ .+||.|+.||.|.|||+.|-..-     ....+|..+|.+++|++ +++.++|++.|..|++||+..+.
T Consensus        26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~ia-----r~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIA-----RMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGS   98 (405)
T ss_pred             cceEEeccCc-ceeeeeccCCcEEEEEccccchh-----hhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCC
Confidence            6799999976 58999999999999999875432     33457999999999996 67889999999999999998665


Q ss_pred             cceEEeeccccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCC-CCcEEEEEEccCCCEEEEEEeC
Q 024451          129 RAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE-IPHVTSIAFSISGRLLFAGYSN  206 (267)
Q Consensus       129 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~g~~d  206 (267)
                       +...+. ...+|..+.|+|. .+.+++.-.+..-.+-++..++..  ......... .....+..|++.|+++++|.+.
T Consensus        99 -~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~--~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK  174 (405)
T KOG1273|consen   99 -PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS--VLPKDDDGDLNSSASHGVFDRRGKYIITGTSK  174 (405)
T ss_pred             -ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee--eccCCCccccccccccccccCCCCEEEEecCc
Confidence             455454 4688999999994 344444444444555555543221  111111111 0112344689999999999999


Q ss_pred             CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          207 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       207 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      |.+.+||..+.+.+..+..   .-...|..+.++-.|++|+.-+.|+.||.|++.
T Consensus       175 Gkllv~~a~t~e~vas~ri---ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  175 GKLLVYDAETLECVASFRI---TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             ceEEEEecchheeeeeeee---chheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            9999999998887765421   123578899999999999999999999999864

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.82  E-value=1.2e-18  Score=133.07  Aligned_cols=232  Identities=19%  Similarity=0.293  Sum_probs=166.3

Q ss_pred             CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeE---EEEEEecCCCeeEEEeeCCCeEEEEeC-CCCee
Q 024451            6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV---SCCQYVPDEDTHLITSSGDQTCVLWDI-TTGLR   81 (267)
Q Consensus         6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v---~~~~~~~~~~~~l~s~~~d~~v~iwd~-~~~~~   81 (267)
                      .|+..+.++.+.|.-|++||.-..     +.........|...+   ++++|+|+++ +|+ ++..+.|+++|. +.+..
T Consensus       120 qP~t~l~a~ssr~~PIh~wdaftG-----~lraSy~~ydh~de~taAhsL~Fs~DGe-qlf-aGykrcirvFdt~RpGr~  192 (406)
T KOG2919|consen  120 QPSTNLFAVSSRDQPIHLWDAFTG-----KLRASYRAYDHQDEYTAAHSLQFSPDGE-QLF-AGYKRCIRVFDTSRPGRD  192 (406)
T ss_pred             CCccceeeeccccCceeeeecccc-----ccccchhhhhhHHhhhhheeEEecCCCC-eEe-ecccceEEEeeccCCCCC
Confidence            488899999999999999997542     222222333454443   5799999876 444 678889999999 44433


Q ss_pred             EEEeCCc--cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee-C
Q 024451           82 TSVFGGE--FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-D  158 (267)
Q Consensus        82 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~  158 (267)
                      ...+...  ...+..+-+.+++++|.+...++.++....+-|+.-. ...++..+.+|.+.|+.+.|+++|+.|.+|. .
T Consensus       193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-~~~pl~llggh~gGvThL~~~edGn~lfsGaRk  271 (406)
T KOG2919|consen  193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK  271 (406)
T ss_pred             CcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC-CCCceeeecccCCCeeeEEeccCcCeecccccC
Confidence            2222110  0123456678899999888889999988888777643 3457777889999999999999999999998 4


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEE--EccCCCEEEEEEeCCeEEEEeCCcc-ceeeecccccCCccceEE
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA--FSISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRIT  235 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~  235 (267)
                      |-+|..||++....+.--.+.+...   .-..+-  ..|++++|++|+.+|.|++||++.. ..+..    ...|...++
T Consensus       272 ~dkIl~WDiR~~~~pv~~L~rhv~~---TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv----~~~~sd~vN  344 (406)
T KOG2919|consen  272 DDKILCWDIRYSRDPVYALERHVGD---TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV----TGNYSDTVN  344 (406)
T ss_pred             CCeEEEEeehhccchhhhhhhhccC---ccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc----ccccccccc
Confidence            7799999998765443222222221   123444  4689999999999999999998763 22222    246788999


Q ss_pred             EEEECCCCCeEEEeECC
Q 024451          236 CLGLSADGSALCTGSWD  252 (267)
Q Consensus       236 ~~~~~p~~~~l~sgs~d  252 (267)
                      .++++|--.++|++|..
T Consensus       345 gvslnP~mpilatssGq  361 (406)
T KOG2919|consen  345 GVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ceecCcccceeeeccCc
Confidence            99999998889988754

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.1e-17  Score=138.62  Aligned_cols=240  Identities=18%  Similarity=0.223  Sum_probs=175.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .++|+ +|..|.+.+.+|+|.-||+..-       +....+....+.|++++.+|.++ .++.|+.||.+...+...++-
T Consensus        74 ~L~W~-e~~RLFS~g~sg~i~EwDl~~l-------k~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I  144 (691)
T KOG2048|consen   74 SLAWA-EGGRLFSSGLSGSITEWDLHTL-------KQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKI  144 (691)
T ss_pred             eEEEc-cCCeEEeecCCceEEEEecccC-------ceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceE
Confidence            36788 4666999999999999998752       23344556678999999999764 688899999777777766543


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce---EEee----ccccceeEEEEecCCCEEE
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV---RTFH----GHEGDVNTVKFFPDGNRFG  154 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~---~~~~----~~~~~i~~~~~~~~~~~l~  154 (267)
                      ....   .....++++.+++|++. +..+++|+.||.|++||........   .++.    .....|+++.|-.+ ..++
T Consensus       145 ~~~r---~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~  219 (691)
T KOG2048|consen  145 TYKR---SLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIA  219 (691)
T ss_pred             EEEe---ecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEE
Confidence            2211   12234689999999975 4557899999999999997654322   0111    12334778888755 5799


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceE
Q 024451          155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI  234 (267)
Q Consensus       155 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  234 (267)
                      +|..-|+|.+||...+..++.+     ..+...|.+++.++++..+++++.|+.+..|...+.+...........|...|
T Consensus       220 sgDS~G~V~FWd~~~gTLiqS~-----~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdv  294 (691)
T KOG2048|consen  220 SGDSAGTVTFWDSIFGTLIQSH-----SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDV  294 (691)
T ss_pred             EecCCceEEEEcccCcchhhhh-----hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccc
Confidence            9999999999999988765433     23345699999999999999999999999998766544221222234677789


Q ss_pred             EEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          235 TCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       235 ~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .+++..++  .|++|+.|+++.+-....
T Consensus       295 rs~av~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  295 RSMAVIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             eeeeeecc--eEEecceeeEEEEccccc
Confidence            99998876  899999999988866543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.81  E-value=7.8e-19  Score=144.91  Aligned_cols=246  Identities=23%  Similarity=0.346  Sum_probs=165.2

Q ss_pred             eCCCCCeEEE--ccCCCeEEEeecCCCCC-CCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            5 FSPTGQSVAC--GGLDSVCSIFNLNSPTD-KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         5 ~~~~g~~l~~--~~~d~~v~~w~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      |+.+....+.  +|.-|.|.||++..+.. +++.++   .+ -....|+.+.|.|-+...|+.++.||.|++|.+..+-.
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p---~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl  662 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMP---GL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL  662 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCccccc---cc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence            3334444443  56789999999977532 222222   12 13456899999998888999999999999999875421


Q ss_pred             --EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451           82 --TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  159 (267)
Q Consensus        82 --~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  159 (267)
                        ..+-+......|.+.|.++.|+|-....+++++.|.+|++||++.. +....+.+|.+.|..++|+|+|+.+|+.+.|
T Consensus       663 ~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD  741 (1012)
T KOG1445|consen  663 PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCKD  741 (1012)
T ss_pred             CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCCCcceeeeecC
Confidence              1111112235799999999999877788999999999999999754 4566788999999999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe----CCeEEEEeCCccce-eeecccccCCccceE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS----NGDCYVWDTLLAKV-VLNLGSLQNSHEGRI  234 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v  234 (267)
                      |++++|..+++.+..  +...+.- ...-..+.|.-+|+++++.+-    .++|.+||.+.... ......+...- ..+
T Consensus       742 g~~rVy~Prs~e~pv--~Eg~gpv-gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-s~L  817 (1012)
T KOG1445|consen  742 GTLRVYEPRSREQPV--YEGKGPV-GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-SPL  817 (1012)
T ss_pred             ceEEEeCCCCCCCcc--ccCCCCc-cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC-ccc
Confidence            999999998765431  1111111 112356778889998877543    46888998765321 11111110000 000


Q ss_pred             EEEEECCCCC-eEEEeECCCcEEEEec
Q 024451          235 TCLGLSADGS-ALCTGSWDTNLKIWAF  260 (267)
Q Consensus       235 ~~~~~~p~~~-~l~sgs~dg~i~~w~~  260 (267)
                       ---+.+|.+ ++++|-.|..|.+|.+
T Consensus       818 -vP~YD~Ds~~lfltGKGD~~v~~yEv  843 (1012)
T KOG1445|consen  818 -VPHYDYDSNVLFLTGKGDRFVNMYEV  843 (1012)
T ss_pred             -cccccCCCceEEEecCCCceEEEEEe
Confidence             011234443 5667777888888864

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.81  E-value=1.6e-16  Score=132.80  Aligned_cols=240  Identities=33%  Similarity=0.574  Sum_probs=174.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe-eeEEEEEE-ecCCCeeEEEeeC-CCeEEEEeCCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQY-VPDEDTHLITSSG-DQTCVLWDITT   78 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~~~l~s~~~-d~~v~iwd~~~   78 (267)
                      ++.|.+.+..++.++.|+.+.+|+.....      .....+.++. ..+..+.+ .++....++..+. |+.+++||...
T Consensus        70 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  143 (466)
T COG2319          70 SIAFSPDGELLLSGSSDGTIKLWDLDNGE------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST  143 (466)
T ss_pred             EEEECCCCcEEEEecCCCcEEEEEcCCCc------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC
Confidence            45688999999999999999999986532      1222333322 35555555 6655434555444 99999999987


Q ss_pred             -CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC-CCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEEE
Q 024451           79 -GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGT  155 (267)
Q Consensus        79 -~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~  155 (267)
                       ......+     ..|...+..+.+++... .+++++. |+.+++|+... ......+.+|...+.+++|+|++. .+++
T Consensus       144 ~~~~~~~~-----~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  216 (466)
T COG2319         144 PGKLIRTL-----EGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIAS  216 (466)
T ss_pred             CCeEEEEE-----ecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCC-CceEEeeccCCCceEEEEEcCCcceEEEE
Confidence             3333333     36888888999997544 6677775 99999999874 446677777999999999999987 5666


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce-eeecccccCCccceE
Q 024451          156 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRI  234 (267)
Q Consensus       156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v  234 (267)
                      ++.|+.+++||...+.........    +.... ...|++++.++++++.++.+++||...... ....    ..|...+
T Consensus       217 ~~~d~~i~~wd~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~v  287 (466)
T COG2319         217 GSSDGTIRLWDLSTGKLLRSTLSG----HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL----SGHSSSV  287 (466)
T ss_pred             ecCCCcEEEEECCCCcEEeeecCC----CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE----ecCCccE
Confidence            699999999998865544421111    11222 227999998999999999999999875554 2222    4578899


Q ss_pred             EEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          235 TCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       235 ~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      .++.|+|++..+++++.|+.+++|++...
T Consensus       288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  316 (466)
T COG2319         288 LSVAFSPDGKLLASGSSDGTVRLWDLETG  316 (466)
T ss_pred             EEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence            99999999999998999999999986543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=1.1e-17  Score=137.11  Aligned_cols=206  Identities=17%  Similarity=0.273  Sum_probs=153.4

Q ss_pred             cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451           39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  118 (267)
Q Consensus        39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~  118 (267)
                      ...++||++.|.|++..|.+ .+|++|+.||+||||.+.++.++....      -.+.|.+++|+|....-++..+.+..
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~------~d~~I~~vaw~P~~~~~vLAvA~~~~  465 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQ------FDSEIRSVAWNPLSDLCVLAVAVGEC  465 (733)
T ss_pred             eeeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEe------ecceeEEEEecCCCCceeEEEEecCc
Confidence            44678999999999999965 699999999999999999998877653      34578899998866555555554444


Q ss_pred             EEEEeCCCc------------------------------------ccceEEeeccccceeEEEEecCCCEEEEeeCC---
Q 024451          119 ARLWDTRVA------------------------------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---  159 (267)
Q Consensus       119 i~iwd~~~~------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---  159 (267)
                      +-|-+...+                                    ...++..-.|...|..+.||..|.||++...+   
T Consensus       466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~  545 (733)
T KOG0650|consen  466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN  545 (733)
T ss_pred             eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence            444432211                                    00112233477889999999999999987654   


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      ..|-|.++...+...-+.     ...+.+.++.|+|...+|++++ ...|++||+...+.+..+    ......|.++++
T Consensus       546 ~~VliHQLSK~~sQ~PF~-----kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL----~tg~kwiS~msi  615 (733)
T KOG0650|consen  546 KSVLIHQLSKRKSQSPFR-----KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKL----LTGSKWISSMSI  615 (733)
T ss_pred             ceEEEEecccccccCchh-----hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHH----hcCCeeeeeeee
Confidence            568888887544322221     1234689999999999999885 567999998876665544    234567999999


Q ss_pred             CCCCCeEEEeECCCcEEEEecC
Q 024451          240 SADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      +|.|.-|+.|+.|+.+..||+.
T Consensus       616 hp~GDnli~gs~d~k~~WfDld  637 (733)
T KOG0650|consen  616 HPNGDNLILGSYDKKMCWFDLD  637 (733)
T ss_pred             cCCCCeEEEecCCCeeEEEEcc
Confidence            9999999999999999999874

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=8.4e-19  Score=152.88  Aligned_cols=203  Identities=16%  Similarity=0.252  Sum_probs=157.9

Q ss_pred             ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      .+.|++.. +.|++|+.||.|.|||+..+..+     ....-..-...|.+++|+..-...|++++.+|.+.|||++..+
T Consensus       121 gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP-----~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~  195 (1049)
T KOG0307|consen  121 GLDFNPFQGNLLASGADDGEILIWDLNKPETP-----FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK  195 (1049)
T ss_pred             eeeccccCCceeeccCCCCcEEEeccCCcCCC-----CCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC
Confidence            46788765 59999999999999999864422     1111223457899999998777789999999999999998764


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC---eEEEEeCCCcccceEEeeccccceeEEEEecCC-CEEEEe
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTG  156 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~  156 (267)
                      .+..+..  . +....+..+.|+|.+...+++++.|.   .|.+||+|....+.+.+.+|...|.++.|++.. .+++++
T Consensus       196 pii~ls~--~-~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs  272 (1049)
T KOG0307|consen  196 PIIKLSD--T-PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS  272 (1049)
T ss_pred             ccccccc--C-CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc
Confidence            4333321  1 11244778999998877777776554   599999998888889999999999999999965 889999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCcc
Q 024451          157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLA  217 (267)
Q Consensus       157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~  217 (267)
                      +.|+.|.+|+..+++.+..+..     ...++..+.|.|... .+++.+-||.|-||.++..
T Consensus       273 gkD~~ii~wN~~tgEvl~~~p~-----~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  273 GKDNRIICWNPNTGEVLGELPA-----QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             cCCCCeeEecCCCceEeeecCC-----CCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence            9999999999999877654422     234789999999877 7778889999999987643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.3e-17  Score=144.65  Aligned_cols=250  Identities=18%  Similarity=0.267  Sum_probs=161.1

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccC---CeeeEEEEEEec-CCCeeEEEeeCCCeEEEEeCC-
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG---HKGYVSCCQYVP-DEDTHLITSSGDQTCVLWDIT-   77 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~-~~~~~l~s~~~d~~v~iwd~~-   77 (267)
                      +.|+|-...++++.....+++||.+...       ....+..   -...|+.+.+.. ++..++++|+.||.||||+-- 
T Consensus      1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~-------~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGR-------LLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred             eeecCCCceeEEcCCcceEEEEecccCc-------eeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence            4688888899999988899999987643       1112211   224567766653 445689999999999999653 


Q ss_pred             CC--eeEEEeCCcc----ccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CC
Q 024451           78 TG--LRTSVFGGEF----QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DG  150 (267)
Q Consensus        78 ~~--~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~  150 (267)
                      ..  ....+-....    ..+..+.-.-++|....+.+++ +|.-..|+|||............+-...++++.-+. .|
T Consensus      1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~-tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLV-TGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred             cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEe-cCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence            21  1111100000    0112222234556655555554 444779999998754332222223344456665443 47


Q ss_pred             CEEEEeeCCCcEEEEeCCCCee--eEEEEeecCCCCCCcEEEEEEccCCCE-EEEEEeCCeEEEEeCCccceeeeccccc
Q 024451          151 NRFGTGSDDGTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRL-LFAGYSNGDCYVWDTLLAKVVLNLGSLQ  227 (267)
Q Consensus       151 ~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~g~~dg~i~i~d~~~~~~~~~~~~~~  227 (267)
                      +.+++|..||.+++||.+....  ....+.+|.  ...+|..+.+-++|-- |++|+.+|.|++||++... ..++..+.
T Consensus      1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~--~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~iv 1298 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHN--DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLTIV 1298 (1387)
T ss_pred             ceEEEeecCCceEEeecccCCccccceeecccC--CcccceeEEeecCCCcceeeeccCCeEEEEecccCc-ccccceee
Confidence            9999999999999999886543  233333332  2234889999887765 9999999999999987642 11221111


Q ss_pred             C--CccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          228 N--SHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       228 ~--~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      .  ...+.++++..+++...+|+|+. +.|+||+..|-+
T Consensus      1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred             eccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh
Confidence            1  11336999999999999999998 999999987643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.80  E-value=8.9e-18  Score=126.55  Aligned_cols=207  Identities=18%  Similarity=0.292  Sum_probs=150.1

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      |+.|.|++..|++.. |..|.+|+++.......+++... -.+|....++-+|+|..+..-+....|++++.||.++..+
T Consensus       128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~-s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~  205 (370)
T KOG1007|consen  128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE-SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKK  205 (370)
T ss_pred             eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccc-cccccceecccccCCCCccceEEEeCCCcEEEEEccchhh
Confidence            567999999999876 88899999986432222222221 2346777888999994333445566799999999998765


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDG  160 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~  160 (267)
                      ...+.    .+|...+..+.|+|.-..++++++.||.|+|||.+..+.++..+.+|.-.|.++.|+|. ..++.+++.|.
T Consensus       206 ~~sI~----dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs  281 (370)
T KOG1007|consen  206 NNSIE----DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDS  281 (370)
T ss_pred             hcchh----hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCc
Confidence            44332    56888899999999888899999999999999999888889999999999999999995 46788999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecC------------------------CCCCCcEEEEEEccCCCEEEE-EEeCCeEEEEeC
Q 024451          161 TCRLFDIRTGHQLQVYYQQHG------------------------ENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDT  214 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~------------------------~~~~~~v~~~~~s~~~~~l~~-g~~dg~i~i~d~  214 (267)
                      .|.+|...+......+.....                        ..+...|.+++||....++++ -+.||.+.|=.+
T Consensus       282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             eeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence            999998543221100000000                        012235788899887777655 467887766553

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.80  E-value=5.4e-18  Score=129.71  Aligned_cols=217  Identities=18%  Similarity=0.296  Sum_probs=157.4

Q ss_pred             cccCCeeeEEEEEEec----CCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC---CCeEEEEe
Q 024451           41 MLSGHKGYVSCCQYVP----DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS---NSRMFVSG  113 (267)
Q Consensus        41 ~~~~h~~~v~~~~~~~----~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~s~  113 (267)
                      ...+|+.+|+.++|++    ++.+.+++++ .+.+.||+.....-...++......|.+....++|.-.   .+.+++.+
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            3467999999999984    2234455544 45788887765433333332222346677777777521   35678889


Q ss_pred             cCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEE
Q 024451          114 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA  192 (267)
Q Consensus       114 ~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  192 (267)
                      |.-|.|+|.|+.. .+....+.+|...|+.+.++|+ .++++++++|.+||+|++++..++..+-.  .+++...|.++.
T Consensus       112 G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG--~egHrdeVLSvD  188 (385)
T KOG1034|consen  112 GYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG--VEGHRDEVLSVD  188 (385)
T ss_pred             cceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc--cccccCcEEEEE
Confidence            9999999999864 4567788999999999999996 47899999999999999999888776643  345677899999


Q ss_pred             EccCCCEEEEEEeCCeEEEEeCCccceeeec---------------c----c-----ccCCccceEEEEEECCCCCeEEE
Q 024451          193 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNL---------------G----S-----LQNSHEGRITCLGLSADGSALCT  248 (267)
Q Consensus       193 ~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---------------~----~-----~~~~~~~~v~~~~~~p~~~~l~s  248 (267)
                      |++++.+|++++.|..|.+|++...+....+               .    .     -..-|...|-|+.|-  |++++|
T Consensus       189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilS  266 (385)
T KOG1034|consen  189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILS  266 (385)
T ss_pred             EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheee
Confidence            9999999999999999999998632211000               0    0     111255555555554  689999


Q ss_pred             eECCCcEEEEecCce
Q 024451          249 GSWDTNLKIWAFGGY  263 (267)
Q Consensus       249 gs~dg~i~~w~~~~~  263 (267)
                      =|.++.|..|.++.+
T Consensus       267 kscenaI~~w~pgkl  281 (385)
T KOG1034|consen  267 KSCENAIVCWKPGKL  281 (385)
T ss_pred             cccCceEEEEecchh
Confidence            999999999987643

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.79  E-value=7.1e-16  Score=128.81  Aligned_cols=237  Identities=36%  Similarity=0.620  Sum_probs=174.8

Q ss_pred             CCCCC-eEEEccC-CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC-CCeEEEEeCCCCeeE
Q 024451            6 SPTGQ-SVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRT   82 (267)
Q Consensus         6 ~~~g~-~l~~~~~-d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~   82 (267)
                      .+++. .++..+. |+.+.+|+....      ......+..|...|..+.|.|++. .+++++. |+.+++|+..++...
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  191 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLSTP------GKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPL  191 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecCC------CeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceE
Confidence            67777 5555455 999999998641      124566788999999999999765 6777775 999999999875555


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE-EeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ..+     .+|...+..+.+.+.....+++++.|+.+++||... ..... .+.+|.... -..|+|++..+++++.|+.
T Consensus       192 ~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~  264 (466)
T COG2319         192 STL-----AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT  264 (466)
T ss_pred             Eee-----ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc
Confidence            544     348889999999954332555669999999998763 33444 577777765 4489999989999999999


Q ss_pred             EEEEeCCCCee-eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          162 CRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       162 i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      +++||.+.... .... .    .+...+.++.|+|++..+++++.|+.+.+||...........  ...|...+..+.+.
T Consensus       265 ~~~~~~~~~~~~~~~~-~----~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  337 (466)
T COG2319         265 IRLWDLRSSSSLLRTL-S----GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--LKGHEGPVSSLSFS  337 (466)
T ss_pred             EEEeeecCCCcEEEEE-e----cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee--ecccCCceEEEEEC
Confidence            99999987654 2222 1    224568899999988888888888889999887665544432  23566678999994


Q ss_pred             CCCCeEEEe-ECCCcEEEEecCce
Q 024451          241 ADGSALCTG-SWDTNLKIWAFGGY  263 (267)
Q Consensus       241 p~~~~l~sg-s~dg~i~~w~~~~~  263 (267)
                      +++..++.+ ..|+.+.+|+....
T Consensus       338 ~~~~~~~~~~~~d~~~~~~~~~~~  361 (466)
T COG2319         338 PDGSLLVSGGSDDGTIRLWDLRTG  361 (466)
T ss_pred             CCCCEEEEeecCCCcEEeeecCCC
Confidence            343455555 68899999986543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=8.6e-18  Score=137.73  Aligned_cols=239  Identities=14%  Similarity=0.209  Sum_probs=167.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++...|.|.+|++|+.||+|+||.+.+..       +.++.. -.+.|.|++|+|....-++++..+..+.|-|..-+.+
T Consensus       405 ~iSvdp~G~wlasGsdDGtvriWEi~TgR-------cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~  476 (733)
T KOG0650|consen  405 SISVDPSGEWLASGSDDGTVRIWEIATGR-------CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR  476 (733)
T ss_pred             EEEecCCcceeeecCCCCcEEEEEeecce-------EEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence            45677999999999999999999987532       333322 2357999999997654444444444455554432211


Q ss_pred             EEE---------e-----C----Cc--------------cccCCccceEEEEEeCCCCeEEEEecC---CCeEEEEeCCC
Q 024451           82 TSV---------F-----G----GE--------------FQSGHTADVLSVSISGSNSRMFVSGSC---DSTARLWDTRV  126 (267)
Q Consensus        82 ~~~---------~-----~----~~--------------~~~~~~~~i~~~~~~~~~~~~~~s~~~---d~~i~iwd~~~  126 (267)
                      +..         .     .    ..              ..-.|...|..+.|+.. +.+|++...   ...|.|.++..
T Consensus       477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV~~~~~~~~VliHQLSK  555 (733)
T KOG0650|consen  477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATVMPDSGNKSVLIHQLSK  555 (733)
T ss_pred             hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEeccCCCcceEEEEeccc
Confidence            100         0     0    00              01136778889999964 556776544   34688888863


Q ss_pred             cccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC
Q 024451          127 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  206 (267)
Q Consensus       127 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d  206 (267)
                      . +....+.-..+.+.++.|+|...+|+++++ ..|+|||+........+     ......+..++.+|.|..|+.|+.|
T Consensus       556 ~-~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL-----~tg~kwiS~msihp~GDnli~gs~d  628 (733)
T KOG0650|consen  556 R-KSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKL-----LTGSKWISSMSIHPNGDNLILGSYD  628 (733)
T ss_pred             c-cccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHH-----hcCCeeeeeeeecCCCCeEEEecCC
Confidence            2 233445445677999999999888888775 59999999764433222     1223468999999999999999999


Q ss_pred             CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          207 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       207 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      +.+..||+.....+.+..   ..|...+.+++|++.-.++++||.||++.||.
T Consensus       629 ~k~~WfDldlsskPyk~l---r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  629 KKMCWFDLDLSSKPYKTL---RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             CeeEEEEcccCcchhHHh---hhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            999999987654333322   46899999999999999999999999999985

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.78  E-value=6.2e-17  Score=122.15  Aligned_cols=240  Identities=16%  Similarity=0.231  Sum_probs=164.2

Q ss_pred             eeeCCCC-----CeEEEccCCCeEEEeecCCCCCCCCCCcccc-----cccCCeeeEEEEEEecCCCeeEEEeeCCCeEE
Q 024451            3 CAFSPTG-----QSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-----MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV   72 (267)
Q Consensus         3 ~~~~~~g-----~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~   72 (267)
                      +-|.|+.     ++|||.|  ..+|+|.+...+.+   ..+..     ....+..++++..|+.-+.+++.++|-|-+..
T Consensus       102 ~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~---~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCT  176 (364)
T KOG0290|consen  102 LMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESR---VELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCT  176 (364)
T ss_pred             eEecCCccccCcchhhccc--CeEEEEeccCcCCc---eehhhhhccCcccccCCcccccccccCCcceeEeecccCeEE
Confidence            4466655     3566544  36999998753211   11111     23356678999999877778999999999999


Q ss_pred             EEeCCCCee--EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc--ccceeEEEEec
Q 024451           73 LWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFP  148 (267)
Q Consensus        73 iwd~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~~  148 (267)
                      |||++++..  +.+   + .-+|...|..++|...+.++|++.|.||.+|+||++......-.+...  ..+...++|++
T Consensus       177 iWdie~~~~~~vkT---Q-LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk  252 (364)
T KOG0290|consen  177 IWDIETGVSGTVKT---Q-LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK  252 (364)
T ss_pred             EEEEeeccccceee---E-EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence            999998722  111   1 126999999999998778899999999999999998544333333322  24567788877


Q ss_pred             -CCCEEEEeeCC-CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccce-eeecc
Q 024451          149 -DGNRFGTGSDD-GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKV-VLNLG  224 (267)
Q Consensus       149 -~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~-~~~~~  224 (267)
                       +-+++|+-..| ..|.|.|++.......    ...++...|..++|.|.. ..|.+++.|.+..+||+.+.-. .....
T Consensus       253 qDpnymATf~~dS~~V~iLDiR~P~tpva----~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP  328 (364)
T KOG0290|consen  253 QDPNYMATFAMDSNKVVILDIRVPCTPVA----RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP  328 (364)
T ss_pred             CCchHHhhhhcCCceEEEEEecCCCccee----hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence             45778876654 5799999987654332    123455689999999975 5788888999999999865322 11111


Q ss_pred             cccCCccceEEEEEECC-CCCeEEEeECCCcEE
Q 024451          225 SLQNSHEGRITCLGLSA-DGSALCTGSWDTNLK  256 (267)
Q Consensus       225 ~~~~~~~~~v~~~~~~p-~~~~l~sgs~dg~i~  256 (267)
                      .+...-+++|+.+.|+| .+..++.+.. +.+.
T Consensus       329 ilay~a~~EVNqi~Ws~~~~Dwiai~~~-kkle  360 (364)
T KOG0290|consen  329 ILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLE  360 (364)
T ss_pred             hhhhhccceeeeeeecccCCCEEEEEec-Ceee
Confidence            11123567899999996 4667887754 4433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=4.9e-16  Score=127.01  Aligned_cols=245  Identities=11%  Similarity=0.145  Sum_probs=150.1

Q ss_pred             eeeCCCCCeEEEc-cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee-CCCeEEEEeCCCCe
Q 024451            3 CAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGL   80 (267)
Q Consensus         3 ~~~~~~g~~l~~~-~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~   80 (267)
                      ++++|++++|..+ ..++.|.+|++...    +......... ..+....+.|+|++. ++++++ .++.|.+|++++..
T Consensus        40 l~~spd~~~lyv~~~~~~~i~~~~~~~~----g~l~~~~~~~-~~~~p~~i~~~~~g~-~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         40 MVISPDKRHLYVGVRPEFRVLSYRIADD----GALTFAAESP-LPGSPTHISTDHQGR-FLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             EEECCCCCEEEEEECCCCcEEEEEECCC----CceEEeeeec-CCCCceEEEECCCCC-EEEEEEcCCCeEEEEEECCCC
Confidence            5789999988665 45888999998631    1111111111 112345688999875 455544 58999999996421


Q ss_pred             ----eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce----EEee-ccccceeEEEEecCCC
Q 024451           81 ----RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV----RTFH-GHEGDVNTVKFFPDGN  151 (267)
Q Consensus        81 ----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~----~~~~-~~~~~i~~~~~~~~~~  151 (267)
                          ....+      .+......+.++|....++++...++.|.+||+.......    .... ........+.|+|+++
T Consensus       114 ~~~~~~~~~------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~  187 (330)
T PRK11028        114 IPVAPIQII------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQ  187 (330)
T ss_pred             CCCCceeec------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCC
Confidence                11111      1222355677887655566677778999999986422111    0011 1123457899999999


Q ss_pred             EEEEeeC-CCcEEEEeCCCC-eeeEEEEe--ecCC--CCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCccceeee-c
Q 024451          152 RFGTGSD-DGTCRLFDIRTG-HQLQVYYQ--QHGE--NEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLN-L  223 (267)
Q Consensus       152 ~l~~~~~-d~~i~iwd~~~~-~~~~~~~~--~~~~--~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~~~~-~  223 (267)
                      +++++.. +++|.+||++.. ..+.....  ....  ........+.++|++++++++.. ++.|.+|++........ .
T Consensus       188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~  267 (330)
T PRK11028        188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE  267 (330)
T ss_pred             EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence            9987775 899999999742 11111111  0100  11123346889999999998864 68999999754321111 1


Q ss_pred             ccccCCccceEEEEEECCCCCeEEEeEC-CCcEEEEecC
Q 024451          224 GSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKIWAFG  261 (267)
Q Consensus       224 ~~~~~~~~~~v~~~~~~p~~~~l~sgs~-dg~i~~w~~~  261 (267)
                      ..... . .....+.++|+|++|+++.. +++|.+|+++
T Consensus       268 ~~~~~-~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        268 GHQPT-E-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEec-c-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            11111 1 13346899999999998775 8999999874

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.1e-17  Score=131.75  Aligned_cols=201  Identities=20%  Similarity=0.275  Sum_probs=145.0

Q ss_pred             EEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc
Q 024451           50 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR  129 (267)
Q Consensus        50 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~  129 (267)
                      .+++|++++ ..+++++.||++|+|+.++......+     ..|...|.++.|++ +++.+++-+.| ..+||+++... 
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e-----~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~-  218 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEE-----IAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGA-  218 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhh-----HhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCc-
Confidence            568888865 58999999999999997654433222     46888999999996 56788999999 99999998653 


Q ss_pred             ceEEee--ccccceeEEEEecCC-----CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE
Q 024451          130 AVRTFH--GHEGDVNTVKFFPDG-----NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  202 (267)
Q Consensus       130 ~~~~~~--~~~~~i~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  202 (267)
                      .+....  ........+.|..++     ..++....-+.|+.||+...+.-..............|++++.+.+|++++.
T Consensus       219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence            222222  222335677887766     2334445667788877654322111111111112235899999999999999


Q ss_pred             EEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          203 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       203 g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      |+.||.|.|++...-+.+.-   .+..|...|+.+.|+|+.+++++-|.|.++.+..+..
T Consensus       299 GT~dGsVai~~~~~lq~~~~---vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQY---VKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eccCCcEEEEEeceeeeeEe---ehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            99999999999876655443   3467999999999999999999999999999987654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=1.4e-17  Score=135.07  Aligned_cols=208  Identities=19%  Similarity=0.296  Sum_probs=151.8

Q ss_pred             CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451            9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE   88 (267)
Q Consensus         9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   88 (267)
                      ...++..+.||.+.+-+-..        .+.+...+|.+.+.|-+|+|++. -|+++++||.|+||.- +|....++.  
T Consensus        75 ~d~~~i~s~DGkf~il~k~~--------rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSr-sGMLRStl~--  142 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSA--------RVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSR-SGMLRSTVV--  142 (737)
T ss_pred             cceEEEEcCCceEEEecccc--------hhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEec-cchHHHHHh--
Confidence            35677778899988886432        36678889999999999999875 5889999999999974 444333321  


Q ss_pred             cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCC
Q 024451           89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  168 (267)
Q Consensus        89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  168 (267)
                         .....|.|++|.|.+...+.+.+  +.+.|-.+....+ +-..++|.+.|.++.|++..+.+++|++|-..++||-.
T Consensus       143 ---Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~  216 (737)
T KOG1524|consen  143 ---QNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ  216 (737)
T ss_pred             ---hcCceeEEEEECCCCCceEEecC--CeEEEeecccccc-eeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence               24567999999987777665544  3555555554343 44567899999999999999999999999999999975


Q ss_pred             CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEE
Q 024451          169 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT  248 (267)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s  248 (267)
                      . ..+   +..  ..+..+|++++|.|+ ..++.|+.+ .++               +...-.+.|..++|||||..+++
T Consensus       217 G-~~L---f~S--~~~ey~ITSva~npd-~~~~v~S~n-t~R---------------~~~p~~GSifnlsWS~DGTQ~a~  273 (737)
T KOG1524|consen  217 G-ANL---FTS--AAEEYAITSVAFNPE-KDYLLWSYN-TAR---------------FSSPRVGSIFNLSWSADGTQATC  273 (737)
T ss_pred             C-ccc---ccC--Chhccceeeeeeccc-cceeeeeee-eee---------------ecCCCccceEEEEEcCCCceeec
Confidence            3 322   111  123357999999999 555555422 222               11334568999999999999999


Q ss_pred             eECCCcEEE
Q 024451          249 GSWDTNLKI  257 (267)
Q Consensus       249 gs~dg~i~~  257 (267)
                      |...|.+.+
T Consensus       274 gt~~G~v~~  282 (737)
T KOG1524|consen  274 GTSTGQLIV  282 (737)
T ss_pred             cccCceEEE
Confidence            998887654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.4e-17  Score=133.21  Aligned_cols=222  Identities=23%  Similarity=0.357  Sum_probs=155.2

Q ss_pred             ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeC-CCCeEEEEecCC
Q 024451           38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG-SNSRMFVSGSCD  116 (267)
Q Consensus        38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~s~~~d  116 (267)
                      ....+.||++.|.|+.|+.++ .+|++||.|-.+.|||.-..+.+..+.    .+|...|+++.|.| .+++++++|..|
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~----TgHtaNIFsvKFvP~tnnriv~sgAgD  116 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSIS----TGHTANIFSVKFVPYTNNRIVLSGAGD  116 (758)
T ss_pred             hhhhhccccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeee----cccccceeEEeeeccCCCeEEEeccCc
Confidence            455788999999999999876 589999999999999998666655543    58999999999987 467889999999


Q ss_pred             CeEEEEeCCCc---------ccceEEeeccccceeEEEEecCC-CEEEEeeCCCcEEEEeCCCCeeeEE---EEee--cC
Q 024451          117 STARLWDTRVA---------SRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQV---YYQQ--HG  181 (267)
Q Consensus       117 ~~i~iwd~~~~---------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~--~~  181 (267)
                      ..|+++|+...         ....+....|...|..++..|++ ..|.++++||+|+-+|++....-..   ....  .-
T Consensus       117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny  196 (758)
T KOG1310|consen  117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY  196 (758)
T ss_pred             ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence            99999998631         22344556788888889998987 7899999999999999986321100   0000  00


Q ss_pred             CCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceee------e---------cccccCCcc-----------ceE
Q 024451          182 ENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVL------N---------LGSLQNSHE-----------GRI  234 (267)
Q Consensus       182 ~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~------~---------~~~~~~~~~-----------~~v  234 (267)
                      ........++..+|... +|++|++|-..++||.+......      .         ...+...|.           ..+
T Consensus       197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~  276 (758)
T KOG1310|consen  197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCC  276 (758)
T ss_pred             chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeee
Confidence            00112356788888754 78889999999999942211000      0         000001111           135


Q ss_pred             EEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          235 TCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       235 ~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      +-+.|+|+|..|+..=..-.|.+++++.-+
T Consensus       277 t~vtfnpNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  277 TYVTFNPNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             EEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence            678999999877654334578888876443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=2.4e-17  Score=129.84  Aligned_cols=199  Identities=22%  Similarity=0.276  Sum_probs=139.1

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +.+|+++|..|++++.||++|+|+.+..       ........|...|.++.|+|++ .+|++-+.| ..++|+.+++..
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~-------~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~  219 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSM-------LTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAA  219 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcc-------hhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCch
Confidence            5789999999999999999999997542       2344567899999999999976 589999999 999999998843


Q ss_pred             EEEeCCccccCCccceEEEEEeCCC---C-eEEEEecCCCeEEEEeCCCccc----ceEEeeccccceeEEEEecCCCEE
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSN---S-RMFVSGSCDSTARLWDTRVASR----AVRTFHGHEGDVNTVKFFPDGNRF  153 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~---~-~~~~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l  153 (267)
                      ......   .........+.|...+   . ++++....-+.|+.|++.....    ..++.......|.+++.+++|+++
T Consensus       220 ~a~~t~---~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~  296 (398)
T KOG0771|consen  220 LARKTP---FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFL  296 (398)
T ss_pred             hhhcCC---cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEE
Confidence            322210   1122223334443221   1 2222333444566655432221    122222233579999999999999


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451          154 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  216 (267)
Q Consensus       154 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~  216 (267)
                      +.|+.||.|.|++..+-+......+.|    ...|+.+.|+|+.+++++-+.+....+..+..
T Consensus       297 AlGT~dGsVai~~~~~lq~~~~vk~aH----~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  297 ALGTMDGSVAIYDAKSLQRLQYVKEAH----LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEeccCCcEEEEEeceeeeeEeehhhh----eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999999999998777665554433    34799999999999999988888888776543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.76  E-value=1.1e-17  Score=138.23  Aligned_cols=207  Identities=17%  Similarity=0.256  Sum_probs=147.6

Q ss_pred             CceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            1 MTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         1 ~~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      ++++|.| |...|+.++.||.|++|.+......+..+.....+.+|...|++++|+|--...|++++.|.+|++||+.+.
T Consensus       631 tDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~  710 (1012)
T KOG1445|consen  631 TDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA  710 (1012)
T ss_pred             eecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh
Confidence            4578887 558899999999999999987654555556677889999999999999966668999999999999999987


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc-cceeEEEEecCCCEEEEeeC
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-GDVNTVKFFPDGNRFGTGSD  158 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~  158 (267)
                      .....+     .+|.+.|..++|++ +++.+++.+.||+|++|+.+....++..-.+.. ..--.+.|--+|.++++.+.
T Consensus       711 ~~~~~l-----~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf  784 (1012)
T KOG1445|consen  711 KLYSRL-----VGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGF  784 (1012)
T ss_pred             hhhhee-----ccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecc
Confidence            654444     47999999999996 578899999999999999876555554333222 22345778789999888776


Q ss_pred             CC----cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCC
Q 024451          159 DG----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTL  215 (267)
Q Consensus       159 d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~  215 (267)
                      |+    .|.+||-.+..............  ..+.--.+++|.+ .+++|-.|..|++|.+.
T Consensus       785 dk~SeRQv~~Y~Aq~l~~~pl~t~~lDva--ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  785 DKSSERQVQMYDAQTLDLRPLYTQVLDVA--PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             cccchhhhhhhhhhhccCCcceeeeeccc--CccccccccCCCceEEEecCCCceEEEEEec
Confidence            54    58888865432111111100000  0000112344544 56778889999999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=1.4e-15  Score=128.38  Aligned_cols=214  Identities=14%  Similarity=0.126  Sum_probs=139.0

Q ss_pred             CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC---CeEEEEeCCCCeeEEEeCCccccCCc
Q 024451           18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTGLRTSVFGGEFQSGHT   94 (267)
Q Consensus        18 d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~   94 (267)
                      +..|.+||.....        .+.+..|...+.+..|+|++. .|+..+.+   ..|++||+.++.......   ..++ 
T Consensus       183 ~~~i~i~d~dg~~--------~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~---~~g~-  249 (429)
T PRK01742        183 PYEVRVADYDGFN--------QFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVAS---FRGH-  249 (429)
T ss_pred             eEEEEEECCCCCC--------ceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEec---CCCc-
Confidence            5789999876422        234567788899999999875 56655543   479999998875433321   1123 


Q ss_pred             cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee-CCCcEEEEeCCCCeee
Q 024451           95 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQL  173 (267)
Q Consensus        95 ~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~  173 (267)
                        ...+.|+|.+..++.+.+.+|.+.||.+.........+..+...+....|+|+|+.++..+ .++..+||++......
T Consensus       250 --~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~  327 (429)
T PRK01742        250 --NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG  327 (429)
T ss_pred             --cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence              2357788755444444557887666643222233455556666788999999999877655 5788899987542221


Q ss_pred             EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451          174 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  253 (267)
Q Consensus       174 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg  253 (267)
                      ..... . .   .  ....|+|+|+.|+..+.++ +.+||+..++......    .+  ....+.|+|||++|+.++.++
T Consensus       328 ~~~l~-~-~---~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~----~~--~~~~~~~sPdG~~i~~~s~~g  393 (429)
T PRK01742        328 ASLVG-G-R---G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS----TF--LDESPSISPNGIMIIYSSTQG  393 (429)
T ss_pred             eEEec-C-C---C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC----CC--CCCCceECCCCCEEEEEEcCC
Confidence            11111 1 1   1  3467999999998887655 5669987665432111    11  224678999999999999999


Q ss_pred             cEEEEec
Q 024451          254 NLKIWAF  260 (267)
Q Consensus       254 ~i~~w~~  260 (267)
                      .+.+|.+
T Consensus       394 ~~~~l~~  400 (429)
T PRK01742        394 LGKVLQL  400 (429)
T ss_pred             CceEEEE
Confidence            8888764

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=3e-16  Score=120.79  Aligned_cols=193  Identities=22%  Similarity=0.281  Sum_probs=138.9

Q ss_pred             eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccc-eEEeecc
Q 024451           60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRA-VRTFHGH  137 (267)
Q Consensus        60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~-~~~~~~~  137 (267)
                      ..++++-..|+|++||..++.....+.     ++...++.+.|... ..+.+.+++.||.||+||+|...+. .....++
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk-----~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~  115 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFK-----GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ  115 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheec-----CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC
Confidence            457888889999999999987666664     45666667777643 4567889999999999999865443 2334444


Q ss_pred             c-cceeEEEEecCCCEEEEee----CCCcEEEEeCCCCee-eEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEE
Q 024451          138 E-GDVNTVKFFPDGNRFGTGS----DDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCY  210 (267)
Q Consensus       138 ~-~~i~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~  210 (267)
                      . .+..+++....++.+++|.    .|-.+-+||.|..++ +..+..    .+...|++++|+|+. +.|++|+.||-+.
T Consensus       116 ~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e----SH~DDVT~lrFHP~~pnlLlSGSvDGLvn  191 (376)
T KOG1188|consen  116 SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE----SHNDDVTQLRFHPSDPNLLLSGSVDGLVN  191 (376)
T ss_pred             CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh----hccCcceeEEecCCCCCeEEeecccceEE
Confidence            4 3556777665677777775    366799999998876 333332    334579999999865 5889999999999


Q ss_pred             EEeCCccceeeecccccCCccceEEEEEECCCC-CeEEEeECCCcEEEEecCc
Q 024451          211 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG-SALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       211 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~sgs~dg~i~~w~~~~  262 (267)
                      +||+........+.. .-.|...|.++.|..++ +-+.+-++..+..+|.+..
T Consensus       192 lfD~~~d~EeDaL~~-viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~  243 (376)
T KOG1188|consen  192 LFDTKKDNEEDALLH-VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED  243 (376)
T ss_pred             eeecCCCcchhhHHH-hhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence            999865422111111 12467789999998665 4577888999999998753

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=9e-15  Score=119.59  Aligned_cols=237  Identities=14%  Similarity=0.170  Sum_probs=145.6

Q ss_pred             eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEE-eeCCCeEEEEeCCC-CeeEEEeCCc
Q 024451           11 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT-SSGDQTCVLWDITT-GLRTSVFGGE   88 (267)
Q Consensus        11 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-~~~d~~v~iwd~~~-~~~~~~~~~~   88 (267)
                      .+++...|+.|++|++...    +.......+. +.+....+.++|++. +|+. +..++.|.+|++.. +... ... .
T Consensus         4 ~y~~~~~~~~I~~~~~~~~----g~l~~~~~~~-~~~~~~~l~~spd~~-~lyv~~~~~~~i~~~~~~~~g~l~-~~~-~   75 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHE----GALTLLQVVD-VPGQVQPMVISPDKR-HLYVGVRPEFRVLSYRIADDGALT-FAA-E   75 (330)
T ss_pred             EEEEcCCCCCEEEEEECCC----CceeeeeEEe-cCCCCccEEECCCCC-EEEEEECCCCcEEEEEECCCCceE-Eee-e
Confidence            3566678999999999531    2222333332 234456788999765 4544 45578899999863 3211 111 1


Q ss_pred             cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc---ceEEeeccccceeEEEEecCCCEEEE-eeCCCcEEE
Q 024451           89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDGNRFGT-GSDDGTCRL  164 (267)
Q Consensus        89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i  164 (267)
                      .  ........+.+++.+..++++...++.|.+|++.....   ....+. +....+.+.++|+++++++ ...++.|.+
T Consensus        76 ~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v  152 (330)
T PRK11028         76 S--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRL  152 (330)
T ss_pred             e--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence            1  11223457888876555555555688999999863221   122222 2344678899999988854 456799999


Q ss_pred             EeCCCCeeeEEE---EeecCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCc--c--ceeeecccccC--CccceE
Q 024451          165 FDIRTGHQLQVY---YQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLL--A--KVVLNLGSLQN--SHEGRI  234 (267)
Q Consensus       165 wd~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~--~--~~~~~~~~~~~--~~~~~v  234 (267)
                      ||+++...+...   ......  ......+.|+|+++++++... ++.|.+||+..  +  +........+.  .+....
T Consensus       153 ~d~~~~g~l~~~~~~~~~~~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  230 (330)
T PRK11028        153 FTLSDDGHLVAQEPAEVTTVE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA  230 (330)
T ss_pred             EEECCCCcccccCCCceecCC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence            999763322110   000001  123568899999999988876 89999999863  1  22222211111  122223


Q ss_pred             EEEEECCCCCeEEEeEC-CCcEEEEec
Q 024451          235 TCLGLSADGSALCTGSW-DTNLKIWAF  260 (267)
Q Consensus       235 ~~~~~~p~~~~l~sgs~-dg~i~~w~~  260 (267)
                      ..+.++|++++|+++.. ++.|.+|++
T Consensus       231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        231 ADIHITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             eeEEECCCCCEEEEecCCCCeEEEEEE
Confidence            46889999999988754 789999987

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=5.4e-15  Score=126.27  Aligned_cols=242  Identities=17%  Similarity=0.281  Sum_probs=180.2

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCC--eeEEEeeCCCeEEEEeCCCCee
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED--THLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .|++|++.++... +..|+||......       +...+.+|+.++..+.+.|...  .++++++.||.|++||...+..
T Consensus        23 vfSnD~k~l~~~~-~~~V~VyS~~Tg~-------~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L   94 (792)
T KOG1963|consen   23 VFSNDAKFLFLCT-GNFVKVYSTATGE-------CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL   94 (792)
T ss_pred             ccccCCcEEEEee-CCEEEEEecchHh-------hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence            4889998887755 4589999986532       5668899999999999988766  5778999999999999876543


Q ss_pred             EEEeCCc-------------------------------------------------------------------------
Q 024451           82 TSVFGGE-------------------------------------------------------------------------   88 (267)
Q Consensus        82 ~~~~~~~-------------------------------------------------------------------------   88 (267)
                      ..++...                                                                         
T Consensus        95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~  174 (792)
T KOG1963|consen   95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF  174 (792)
T ss_pred             EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence            3322100                                                                         


Q ss_pred             -------------------------cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC---cccceEEeeccccc
Q 024451           89 -------------------------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV---ASRAVRTFHGHEGD  140 (267)
Q Consensus        89 -------------------------~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~  140 (267)
                                               ....|...+.+.+++| ++++++++..||.|.+|.--.   .....+.+.-|-..
T Consensus       175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~  253 (792)
T KOG1963|consen  175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE  253 (792)
T ss_pred             EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence                                     0012555567777875 578899999999999995321   12345567778899


Q ss_pred             eeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee
Q 024451          141 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       141 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  220 (267)
                      |.+++|+++|.++.+||..+-+-+|.+.+++.  .+..    .-..+|..+.+|||+...+...+|..|++..+...+..
T Consensus       254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qfLP----RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k  327 (792)
T KOG1963|consen  254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--QFLP----RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK  327 (792)
T ss_pred             cceeEEecCCceEeecccceEEEEEeecCCCc--cccc----ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh
Confidence            99999999999999999999999999998762  2222    22347999999999999999999999999976443322


Q ss_pred             eecccccC-------CccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          221 LNLGSLQN-------SHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       221 ~~~~~~~~-------~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ..+.++..       .-.+-.+.++++|--+.++-.++.|.|.+|++
T Consensus       328 ~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl  374 (792)
T KOG1963|consen  328 STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL  374 (792)
T ss_pred             hhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence            22222211       12445677899997778888899999999986

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.72  E-value=1.7e-17  Score=140.69  Aligned_cols=228  Identities=24%  Similarity=0.401  Sum_probs=166.8

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +|.+|...|.++++|+.|..++||..+..       .+....+||.+.|+.++.+.. ...++++|.|..|++|.+.++.
T Consensus       194 yca~fDrtg~~Iitgsdd~lvKiwS~et~-------~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIrvWrl~~~~  265 (1113)
T KOG0644|consen  194 YCAIFDRTGRYIITGSDDRLVKIWSMETA-------RCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIRVWRLPDGA  265 (1113)
T ss_pred             eeeeeccccceEeecCccceeeeeeccch-------hhhccCCCCccccchhccchh-hhhhhhcccCceEEEEecCCCc
Confidence            57789999999999999999999996543       256778999999999998764 4578999999999999999987


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc--ceEEeec-cccceeEEEEecCCCEEEEee
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHG-HEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~~~  157 (267)
                      .+.++     .+|++.|++++|+|-     .+.+.||++++||.+-...  +-+.+.. ....+.++.|...+.-+++++
T Consensus       266 pvsvL-----rghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  266 PVSVL-----RGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             hHHHH-----hccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            76654     589999999999873     3778999999999872111  1111111 124466777777888899999


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  237 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  237 (267)
                      .|+.-..|.+.......        +....++..  +....+.++.-.+..+.+|++..+...+..    ..|...+..+
T Consensus       336 ~d~ea~n~e~~~l~~~~--------~~lif~t~s--sd~~~~~~~ar~~~~~~vwnl~~g~l~H~l----~ghsd~~yvL  401 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAWRS--------NLLIFVTRS--SDLSSIVVTARNDHRLCVWNLYTGQLLHNL----MGHSDEVYVL  401 (1113)
T ss_pred             CCcccccchhhHhhhhc--------cceEEEecc--ccccccceeeeeeeEeeeeecccchhhhhh----cccccceeee
Confidence            99999988765321100        000001111  111234555556778889998877655544    5688899999


Q ss_pred             EECCC-CCeEEEeECCCcEEEEec
Q 024451          238 GLSAD-GSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       238 ~~~p~-~~~l~sgs~dg~i~~w~~  260 (267)
                      .++|- .+...+++.||...|||+
T Consensus       402 d~Hpfn~ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  402 DVHPFNPRIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             eecCCCcHhhhhccCCCceEeeec
Confidence            99984 556678999999999997

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.72  E-value=5.2e-16  Score=125.97  Aligned_cols=198  Identities=22%  Similarity=0.329  Sum_probs=131.2

Q ss_pred             CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccc----cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      |.|--|+-+-..|.+.+.|....       +..+.+    .-.+..|+|+.|.|-++..++.+-.+|.+.+||.+-... 
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~-------~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~-  254 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINF-------EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG-  254 (636)
T ss_pred             CCCcceEEeeccCceEEecchhh-------HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc-
Confidence            45555666777778887775431       111111    112478999999998877888888999999998732100 


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  162 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  162 (267)
                                .+....  ......+ .|       .|..|--.....++....--++.|+..+|+|||++||+.++||.+
T Consensus       255 ----------~t~p~~--~~~k~~~-~f-------~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfL  314 (636)
T KOG2394|consen  255 ----------ATAPSY--QALKDGD-QF-------AILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFL  314 (636)
T ss_pred             ----------CCCCcc--cccCCCC-ee-------EEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceE
Confidence                      000000  0111111 12       122222122222333333335689999999999999999999999


Q ss_pred             EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      ||||..+.+.+-....     ..+...+++|||||++|++|++|--|.+|.+...+.+..-    .+|.+.|..++|.|
T Consensus       315 RvF~fdt~eLlg~mkS-----YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG----qGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  315 RIFDFDTQELLGVMKS-----YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG----QGHKSWVSVVAFDP  384 (636)
T ss_pred             EEeeccHHHHHHHHHh-----hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec----cccccceeeEeecc
Confidence            9999987554332221     2245899999999999999999999999999888877543    47999999999983

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.72  E-value=1.2e-16  Score=125.53  Aligned_cols=197  Identities=22%  Similarity=0.322  Sum_probs=145.1

Q ss_pred             eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-----EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEE
Q 024451           47 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-----TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL  121 (267)
Q Consensus        47 ~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~i  121 (267)
                      .+|+++.|.+.....++||+.|..|+||.++....     ...+ ......|...++.+.|++ .+.++++|+.+|.+.+
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y-~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEY-LSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL   91 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEE-eecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence            46888999887666899999999999998864321     1111 123457999999999996 5678999999999999


Q ss_pred             EeCCC------cc---------cceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCC
Q 024451          122 WDTRV------AS---------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP  186 (267)
Q Consensus       122 wd~~~------~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  186 (267)
                      |....      ..         ...+.+.+|...|..++|+|+++++++++-|..+++||+..++....+..     +..
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d-----h~~  166 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD-----HEH  166 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc-----ccc
Confidence            97540      01         12355678999999999999999999999999999999999886654322     234


Q ss_pred             cEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc-----cccC----------Ccc----ceEEEEEECCCCCeEE
Q 024451          187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG-----SLQN----------SHE----GRITCLGLSADGSALC  247 (267)
Q Consensus       187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-----~~~~----------~~~----~~v~~~~~~p~~~~l~  247 (267)
                      .+..++|+|-++++++=+.|...+.++....+.+....     ....          -|.    .-...++|+|+|.+|+
T Consensus       167 yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv  246 (434)
T KOG1009|consen  167 YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV  246 (434)
T ss_pred             ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence            68899999999999999999877877754433222111     0000          122    2245689999999999


Q ss_pred             EeE
Q 024451          248 TGS  250 (267)
Q Consensus       248 sgs  250 (267)
                      +.+
T Consensus       247 tPa  249 (434)
T KOG1009|consen  247 TPA  249 (434)
T ss_pred             ccc
Confidence            865

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=7.5e-14  Score=108.77  Aligned_cols=229  Identities=14%  Similarity=0.130  Sum_probs=156.8

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC--CeEEEEeCCCCee
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLR   81 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--~~v~iwd~~~~~~   81 (267)
                      .|+-+...|..|+.|| -++|+..+...      ..... ...-.|--..|+.+   ++|..+.+  +.+++.+......
T Consensus        12 ~~Nqd~~~lsvGs~~G-yk~~~~~~~~k------~~~~~-~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~~   80 (391)
T KOG2110|consen   12 GFNQDSTLLSVGSKDG-YKIFSCSPFEK------CFSKD-TEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKTT   80 (391)
T ss_pred             eeccceeEEEccCCCc-eeEEecCchHH------hhccc-CCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCce
Confidence            4777888888888887 78888764221      11111 11233444556543   44444444  4599999876655


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee---ccccceeEEEEecCCCEEEEee-
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFGTGS-  157 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~-  157 (267)
                      ++.+.      ....|.+|..+-  ++ ++..-.+ .|.|||++... .+..+.   .+...+..+.+++.+.++|--+ 
T Consensus        81 ICe~~------fpt~IL~VrmNr--~R-LvV~Lee-~IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s  149 (391)
T KOG2110|consen   81 ICEIF------FPTSILAVRMNR--KR-LVVCLEE-SIYIYDIKDMK-LLHTIETTPPNPKGLCALSPNNANCYLAYPGS  149 (391)
T ss_pred             EEEEe------cCCceEEEEEcc--ce-EEEEEcc-cEEEEecccce-eehhhhccCCCccceEeeccCCCCceEEecCC
Confidence            54432      235688888752  34 4444443 49999998543 333332   3444566666666677887533 


Q ss_pred             -CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC-eEEEEeCCccceeeecccccCCccceEE
Q 024451          158 -DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQNSHEGRIT  235 (267)
Q Consensus       158 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~  235 (267)
                       ..|.|.+||..+.+....+..     +.+.+.+++|+++|.+||+++..| .|++|....+..+.++.+-  .-...|.
T Consensus       150 ~t~GdV~l~d~~nl~~v~~I~a-----H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG--~~~~~Iy  222 (391)
T KOG2110|consen  150 TTSGDVVLFDTINLQPVNTINA-----HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG--TYPVSIY  222 (391)
T ss_pred             CCCceEEEEEcccceeeeEEEe-----cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC--ceeeEEE
Confidence             468999999988776555432     335799999999999999999988 6799999888887776542  2345799


Q ss_pred             EEEECCCCCeEEEeECCCcEEEEecC
Q 024451          236 CLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       236 ~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      +++|+|++.+|++.|.-++|.+|++.
T Consensus       223 SL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  223 SLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             EEEECCCCCeEEEecCCCeEEEEEec
Confidence            99999999999999999999999874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=2.1e-15  Score=127.27  Aligned_cols=212  Identities=16%  Similarity=0.215  Sum_probs=136.8

Q ss_pred             ceeeCCCCCeEEEccCC---CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEE--eC
Q 024451            2 TCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW--DI   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iw--d~   76 (267)
                      ..+|+|||+.|+.++.+   ..|.+||+....     ......+.+|.   ...+|+|++..++++.+.++.+.||  |+
T Consensus       208 ~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~-----~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~  279 (429)
T PRK01742        208 SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA-----RKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGA  279 (429)
T ss_pred             cceEcCCCCEEEEEEecCCCcEEEEEeCCCCc-----eEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence            46799999999988754   469999986421     11223344444   3579999876544455678876665  66


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEe
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG  156 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  156 (267)
                      .++......      .+...+....|+|....++.+...++..+||++.........+ .+..  ....|+|+|++++..
T Consensus       280 ~~~~~~~lt------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~  350 (429)
T PRK01742        280 NGGTPSQLT------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMI  350 (429)
T ss_pred             CCCCeEeec------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEE
Confidence            555433221      2344566788987655555566678888899765433323333 3433  467899999999888


Q ss_pred             eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC--ccceeeecccccCCccceE
Q 024451          157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL--LAKVVLNLGSLQNSHEGRI  234 (267)
Q Consensus       157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~v  234 (267)
                      +.++ +.+||+.+++.... ....      ......|+|+|+.|+.++.+|...+|.+.  .++....+    ..|.+.+
T Consensus       351 ~~~~-i~~~Dl~~g~~~~l-t~~~------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l----~~~~g~~  418 (429)
T PRK01742        351 NGDN-VVKQDLTSGSTEVL-SSTF------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL----PGSDGQV  418 (429)
T ss_pred             cCCC-EEEEECCCCCeEEe-cCCC------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc----cCCCCCC
Confidence            7765 55599988764322 1111      12456799999999999988877777642  23333333    3567778


Q ss_pred             EEEEECCC
Q 024451          235 TCLGLSAD  242 (267)
Q Consensus       235 ~~~~~~p~  242 (267)
                      ...+|+|-
T Consensus       419 ~~p~wsp~  426 (429)
T PRK01742        419 KFPAWSPY  426 (429)
T ss_pred             CCcccCCC
Confidence            88999984

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.69  E-value=9.3e-15  Score=109.60  Aligned_cols=114  Identities=31%  Similarity=0.518  Sum_probs=87.4

Q ss_pred             cccceeEEEEecCCCEEEEe--eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe---CCeEEE
Q 024451          137 HEGDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---NGDCYV  211 (267)
Q Consensus       137 ~~~~i~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~i  211 (267)
                      ..++|.+++|+|+++.|++.  ..++.|.+||++ .+.+..+.       ...+..+.|+|+|+++++++.   .|.|.+
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~  129 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-------TQPRNTISWSPDGRFLVLAGFGNLNGDLEF  129 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-------CCCceEEEECCCCCEEEEEEccCCCcEEEE
Confidence            34579999999999987654  357899999997 33333221       124678999999999998763   478999


Q ss_pred             EeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC------CCcEEEEecCceE
Q 024451          212 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKIWAFGGYR  264 (267)
Q Consensus       212 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~------dg~i~~w~~~~~~  264 (267)
                      ||....+.+...     .|. .++.++|+|+|++|++++.      |..++||++.|..
T Consensus       130 wd~~~~~~i~~~-----~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~  182 (194)
T PF08662_consen  130 WDVRKKKKISTF-----EHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL  182 (194)
T ss_pred             EECCCCEEeecc-----ccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence            999876665443     233 4689999999999998775      7889999998864

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=1.8e-13  Score=106.73  Aligned_cols=159  Identities=18%  Similarity=0.278  Sum_probs=117.6

Q ss_pred             eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEE--ecCCCeEEEEe
Q 024451           46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS--GSCDSTARLWD  123 (267)
Q Consensus        46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s--~~~d~~i~iwd  123 (267)
                      ..+|-+|+.+.+   .|+.+=++ .|.|||+.+.+.+.++.  ....+...+..+.+++. +.+++.  ....|.|.+||
T Consensus        87 pt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~--t~~~n~~gl~AlS~n~~-n~ylAyp~s~t~GdV~l~d  159 (391)
T KOG2110|consen   87 PTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIE--TTPPNPKGLCALSPNNA-NCYLAYPGSTTSGDVVLFD  159 (391)
T ss_pred             CCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhh--ccCCCccceEeeccCCC-CceEEecCCCCCceEEEEE
Confidence            356888888763   35544444 49999999877666553  12234444555555543 234443  23468899999


Q ss_pred             CCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc-EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE
Q 024451          124 TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  202 (267)
Q Consensus       124 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  202 (267)
                      +.. -++...+.+|.+.+-+++|+++|.++|++++.|+ |||+.+.+++.+..+....   ....|.+++|+|++++|++
T Consensus       160 ~~n-l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~---~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  160 TIN-LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT---YPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             ccc-ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc---eeeEEEEEEECCCCCeEEE
Confidence            864 4567788899999999999999999999999887 8999999998776654322   2346899999999999999


Q ss_pred             EEeCCeEEEEeCC
Q 024451          203 GYSNGDCYVWDTL  215 (267)
Q Consensus       203 g~~dg~i~i~d~~  215 (267)
                      .++.+.|++|.+.
T Consensus       236 sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  236 SSNTETVHIFKLE  248 (391)
T ss_pred             ecCCCeEEEEEec
Confidence            9999999999764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=1.6e-15  Score=123.68  Aligned_cols=208  Identities=25%  Similarity=0.323  Sum_probs=139.7

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCC---CCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD---GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT   77 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~   77 (267)
                      +|.+..+++.++.+||-||+|+.|++..+..+.   ....+..++.||++.|+.+++++... .|++++.||++++|+..
T Consensus       348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~  426 (577)
T KOG0642|consen  348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPT  426 (577)
T ss_pred             EEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccC
Confidence            477889999999999999999999987432221   22245567899999999999998764 59999999999999987


Q ss_pred             CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-------ccccceeEEEEecCC
Q 024451           78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------GHEGDVNTVKFFPDG  150 (267)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~i~~~~~~~~~  150 (267)
                      .... .+|....   ..+...++++-.....+.++...-+.-.+.+..... ....+.       .....+.-+.++|.+
T Consensus       427 ~~~~-~~f~~~~---e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s-~~~~~~s~~~~~~~~~~~in~vVs~~~~  501 (577)
T KOG0642|consen  427 EESP-CTFGEPK---EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS-DLLIFESSASPGPRRYPQINKVVSHPTA  501 (577)
T ss_pred             CcCc-cccCCcc---ccCCcceEeeccchhHhhhhhcccccccchhhhhhh-heeeccccCCCcccccCccceEEecCCC
Confidence            6544 3343221   112233444432221222222222222233322211 111111       011346778899999


Q ss_pred             CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce
Q 024451          151 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  219 (267)
Q Consensus       151 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~  219 (267)
                      ...+++..|+.|+++|..+++.+.....     +...++++++.|+|.+|++|+.||.+++|.+.....
T Consensus       502 ~~~~~~hed~~Ir~~dn~~~~~l~s~~a-----~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  502 DITFTAHEDRSIRFFDNKTGKILHSMVA-----HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             CeeEecccCCceecccccccccchheee-----ccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence            9999999999999999998876543221     234589999999999999999999999998754433

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.67  E-value=1.1e-14  Score=123.27  Aligned_cols=233  Identities=23%  Similarity=0.305  Sum_probs=157.4

Q ss_pred             CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee--EEEeCCccccCCcc
Q 024451           18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTA   95 (267)
Q Consensus        18 d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~   95 (267)
                      ++.+.+|++..+..+.      ..+ .-...|+|+.|+|....+++.|..+|.|.+||+..+..  ...+. .....|..
T Consensus       221 ~~~~~vW~~~~p~~Pe------~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls-~~~~sh~~  292 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPE------LVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS-ALEVSHSE  292 (555)
T ss_pred             CceEEEEecCCCCCce------EEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc-cccccCCc
Confidence            3478999998764221      111 23578999999998888999999999999999987654  22221 12246888


Q ss_pred             ceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcccceEE-----ee------ccccceeEEEEec-CCCEEEEeeCCCcE
Q 024451           96 DVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRT-----FH------GHEGDVNTVKFFP-DGNRFGTGSDDGTC  162 (267)
Q Consensus        96 ~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~-----~~------~~~~~i~~~~~~~-~~~~l~~~~~d~~i  162 (267)
                      .+..+.|.... +.-|++++.||.|..|+++.-..+...     ..      .....+++++|.+ +-+.|+.|+++|.|
T Consensus       293 ~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v  372 (555)
T KOG1587|consen  293 PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV  372 (555)
T ss_pred             CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence            99999887421 234789999999999988643321111     11      1123478899988 45679999999998


Q ss_pred             EEEeCCCCeeeE-EEEee--cCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC-ccceeeecccccCCccceEEEEE
Q 024451          163 RLFDIRTGHQLQ-VYYQQ--HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       163 ~iwd~~~~~~~~-~~~~~--~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      .--+....+... ..++.  ....+.++|.++.++|=+..++..+.|-.++||... ...++..+    ..+...|++++
T Consensus       373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~----~~~~~~v~~va  448 (555)
T KOG1587|consen  373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL----DSSPDYVTDVA  448 (555)
T ss_pred             EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh----hhccceeeeeE
Confidence            873322211111 11111  223455689999999877766665569999999976 33333322    34556799999


Q ss_pred             ECCCC-CeEEEeECCCcEEEEecCc
Q 024451          239 LSADG-SALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       239 ~~p~~-~~l~sgs~dg~i~~w~~~~  262 (267)
                      |||.- ..++++..||.+-+||+..
T Consensus       449 WSptrpavF~~~d~~G~l~iWDLl~  473 (555)
T KOG1587|consen  449 WSPTRPAVFATVDGDGNLDIWDLLQ  473 (555)
T ss_pred             EcCcCceEEEEEcCCCceehhhhhc
Confidence            99975 4678888899999999854

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2.1e-15  Score=122.91  Aligned_cols=213  Identities=19%  Similarity=0.286  Sum_probs=148.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      |++|+.+|.+|++|+.|-.+.|||.-..      .++..+-.||...|+|+.|.|. +++.+++|..|..|+++|+....
T Consensus        55 ~LeWn~dG~lL~SGSDD~r~ivWd~~~~------KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~  128 (758)
T KOG1310|consen   55 CLEWNADGELLASGSDDTRLIVWDPFEY------KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSK  128 (758)
T ss_pred             ceeecCCCCEEeecCCcceEEeecchhc------ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccc
Confidence            6789999999999999999999997531      1244455799999999999984 45688999999999999997421


Q ss_pred             eEEE-----eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce---------EEeeccccceeEEEE
Q 024451           81 RTSV-----FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV---------RTFHGHEGDVNTVKF  146 (267)
Q Consensus        81 ~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~---------~~~~~~~~~i~~~~~  146 (267)
                      ...+     .....-..|...+..++.-|...+.+-+++.||+++=+|++.....-         ..+...--...|+..
T Consensus       129 ~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lti  208 (758)
T KOG1310|consen  129 EGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTI  208 (758)
T ss_pred             ccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeee
Confidence            1100     00111246788888888877666889999999999999998532110         111111224568899


Q ss_pred             ecC-CCEEEEeeCCCcEEEEeCCCC--------e----------eeEEEEeecCCCCC-------CcEEEEEEccCCCEE
Q 024451          147 FPD-GNRFGTGSDDGTCRLFDIRTG--------H----------QLQVYYQQHGENEI-------PHVTSIAFSISGRLL  200 (267)
Q Consensus       147 ~~~-~~~l~~~~~d~~i~iwd~~~~--------~----------~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l  200 (267)
                      +|. ..+|++|+.|-..++||.+..        .          +..-+...+..+..       ..++-+.|+|+|.-|
T Consensus       209 sp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtEl  288 (758)
T KOG1310|consen  209 SPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTEL  288 (758)
T ss_pred             cCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEE
Confidence            985 568999999999999995421        0          01111111111111       135678899999999


Q ss_pred             EEEEeCCeEEEEeCCcccee
Q 024451          201 FAGYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       201 ~~g~~dg~i~i~d~~~~~~~  220 (267)
                      +.......|+++|+...+.+
T Consensus       289 Lvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  289 LVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             EEeeCCeEEEEEeecCCCCc
Confidence            99988889999998765543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=3.9e-14  Score=111.04  Aligned_cols=232  Identities=13%  Similarity=0.207  Sum_probs=154.9

Q ss_pred             CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-----eEEE
Q 024451           10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-----RTSV   84 (267)
Q Consensus        10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~   84 (267)
                      ..|...+.|..+.......+.- .....-..+....+.+|..+...  + ..|++|-.+|.+.+|....+.     ....
T Consensus        70 evl~~r~~~~~~~~~~~~E~~~-~s~~~~~~~~~l~~~~I~gl~~~--d-g~Litc~~sG~l~~~~~k~~d~hss~l~~l  145 (412)
T KOG3881|consen   70 EVLNARSADDDLPKFVIEEFEI-SSSLDDAKTVSLGTKSIKGLKLA--D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKL  145 (412)
T ss_pred             eEeeccccCcccccccccCCcc-ccccccccccccccccccchhhc--C-CEEEEEecCCcEEEEeccCCccccccceee
Confidence            4444444555555555443211 01111111233444555554432  2 368999999999999987432     2111


Q ss_pred             eCCccccCCccceEEEEEeCCCCeEEEEecCC--CeEEEEeCCCcccceEEeeccc---------c--ceeEEEEecC--
Q 024451           85 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--STARLWDTRVASRAVRTFHGHE---------G--DVNTVKFFPD--  149 (267)
Q Consensus        85 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d--~~i~iwd~~~~~~~~~~~~~~~---------~--~i~~~~~~~~--  149 (267)
                      .       ....+..+.-++....++++||..  ..+++||+... +.+  +.+.+         -  .++.+.|-+.  
T Consensus       146 a-------~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qi--w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~  215 (412)
T KOG3881|consen  146 A-------TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQI--WSAKNVPNDRLGLRVPVWITDIRFLEGSP  215 (412)
T ss_pred             e-------cCCceeeeccCCCCCceEecCchhcccceeeeecccc-eee--eeccCCCCccccceeeeeeccceecCCCC
Confidence            1       112233444444455677889988  88999998754 222  22221         1  2467889876  


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCC
Q 024451          150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS  229 (267)
Q Consensus       150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~  229 (267)
                      ...||+++.-+.+|+||++.+......+. ..   ..+++++...|.++++++|...|.+..||.+..+.+...   ...
T Consensus       216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~---E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~---~kg  288 (412)
T KOG3881|consen  216 NYKFATITRYHQVRLYDTRHQRRPVAQFD-FL---ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG---LKG  288 (412)
T ss_pred             CceEEEEecceeEEEecCcccCcceeEec-cc---cCcceeeeecCCCcEEEEecccchhheecccCceeeccc---cCC
Confidence            78999999999999999997655432222 11   235899999999999999999999999999887765431   245


Q ss_pred             ccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          230 HEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ..+.|.++-.+|++++||+|+-|+.+||+|+-.
T Consensus       289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             ccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            678899999999999999999999999999765

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2e-15  Score=121.31  Aligned_cols=253  Identities=20%  Similarity=0.374  Sum_probs=178.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCC------------------------------CCC-----------Ccccc
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDK------------------------------DGN-----------LPVSR   40 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~------------------------------~~~-----------~~~~~   40 (267)
                      ++.|+..|..|++++.|..+-+||.......                              +++           ..-..
T Consensus       147 tV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~  226 (559)
T KOG1334|consen  147 TVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTK  226 (559)
T ss_pred             eeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecce
Confidence            3678999999999999999999997642100                              000           00123


Q ss_pred             cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCcc---ceEEEEEeCCCCeEEEEecCCC
Q 024451           41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA---DVLSVSISGSNSRMFVSGSCDS  117 (267)
Q Consensus        41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~s~~~d~  117 (267)
                      .+..|.++|+.++..|.....+.+++.|+.+.=.|+.+......+...  ..+..   ...+++..|.+..++++++.|.
T Consensus       227 rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr--~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq  304 (559)
T KOG1334|consen  227 RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR--EADEKERVGLYTIAVDPRNTNEFAVGGSDQ  304 (559)
T ss_pred             ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee--ccCCccceeeeeEecCCCCccccccCChhh
Confidence            456789999999998877777899999999999999876543333211  12333   5678888998888999999999


Q ss_pred             eEEEEeCCCccc-----ceEEeecc------ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCee------------eE
Q 024451          118 TARLWDTRVASR-----AVRTFHGH------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ------------LQ  174 (267)
Q Consensus       118 ~i~iwd~~~~~~-----~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------~~  174 (267)
                      .+++||.+...+     ++.++..|      ...|++++|+.++.-+.+...|-.|.++.-..+..            ..
T Consensus       305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k  384 (559)
T KOG1334|consen  305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK  384 (559)
T ss_pred             hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence            999999763211     12222221      23489999998777777778888899885432211            11


Q ss_pred             EEEeecCCCCCCcEEEEE-EccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451          175 VYYQQHGENEIPHVTSIA-FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  253 (267)
Q Consensus       175 ~~~~~~~~~~~~~v~~~~-~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg  253 (267)
                      ..++.|..+  ..|..+- |-|...++++|+.=|.|.||+-.+.+.+.-+.    +....|+||.=+|.-..||+.+-|.
T Consensus       385 ~vYKGHrN~--~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me----gDr~VVNCLEpHP~~PvLAsSGid~  458 (559)
T KOG1334|consen  385 RVYKGHRNS--RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME----GDRHVVNCLEPHPHLPVLASSGIDH  458 (559)
T ss_pred             hhhcccccc--cccceeeeccCccceEEecCccceEEEEecchhHHHHHhh----cccceEeccCCCCCCchhhccCCcc
Confidence            112223222  2355665 57889999999988999999988877665443    2233899999999999999999999


Q ss_pred             cEEEEecCc
Q 024451          254 NLKIWAFGG  262 (267)
Q Consensus       254 ~i~~w~~~~  262 (267)
                      .||||...+
T Consensus       459 DVKIWTP~~  467 (559)
T KOG1334|consen  459 DVKIWTPLT  467 (559)
T ss_pred             ceeeecCCc
Confidence            999997633

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.66  E-value=6.4e-15  Score=119.87  Aligned_cols=174  Identities=21%  Similarity=0.361  Sum_probs=126.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +--|+|||.-|+|+|+||.|++|....        -+..++.....+|+|++|.|+....+++.+.--.|+  .+....+
T Consensus       109 ~gRW~~dGtgLlt~GEDG~iKiWSrsG--------MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IK--pL~~n~k  178 (737)
T KOG1524|consen  109 SGRWSPDGAGLLTAGEDGVIKIWSRSG--------MLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIK--PLAANSK  178 (737)
T ss_pred             hcccCCCCceeeeecCCceEEEEeccc--------hHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEe--ecccccc
Confidence            345899999999999999999998643        123345566778999999998877676655433333  3332222


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...    + .+|.+-|.+++|++. ..++++|+.|...++||..  ...+..-..|..+|++++|.|+ +.++.++- ++
T Consensus       179 ~i~----W-kAHDGiiL~~~W~~~-s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt  248 (737)
T KOG1524|consen  179 IIR----W-RAHDGLVLSLSWSTQ-SNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NT  248 (737)
T ss_pred             eeE----E-eccCcEEEEeecCcc-ccceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeeeee-ee
Confidence            211    2 369999999999975 4688999999999999964  3344445578999999999999 66665553 24


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEE
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV  211 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i  211 (267)
                      .|+   +             ....+.|..++||+||..+++|+..|.+.+
T Consensus       249 ~R~---~-------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  249 ARF---S-------------SPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eee---c-------------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence            441   1             123346899999999999999999997654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.66  E-value=7e-15  Score=109.76  Aligned_cols=165  Identities=23%  Similarity=0.335  Sum_probs=121.8

Q ss_pred             CCeeeEEEEEEecC-CC-eeEEEeeCCCeEEEEeCCCCeeEEEeCCcc-----ccCCccceEEEEEeCCCCeEEEEecCC
Q 024451           44 GHKGYVSCCQYVPD-ED-THLITSSGDQTCVLWDITTGLRTSVFGGEF-----QSGHTADVLSVSISGSNSRMFVSGSCD  116 (267)
Q Consensus        44 ~h~~~v~~~~~~~~-~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~s~~~d  116 (267)
                      +..+.+.|..+--. +. .+++.|-++|.+.+||+.++.....++..+     ...|+.++.++.+.+.-++ =++|+.+
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-Gisgga~  226 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-GISGGAD  226 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-CcCCCcc
Confidence            34566777664322 22 345667789999999999885544443221     2358889999999864433 3678888


Q ss_pred             CeEEEEeCCCccc--ceE-EeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEE
Q 024451          117 STARLWDTRVASR--AVR-TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  193 (267)
Q Consensus       117 ~~i~iwd~~~~~~--~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  193 (267)
                      ..+.+|++.....  .++ .+.-.+..+..+...||++.+|+++.|+.||||..++.+.+..+..+.     ..|.+++|
T Consensus       227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs-----agvn~vAf  301 (323)
T KOG0322|consen  227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS-----AGVNAVAF  301 (323)
T ss_pred             ccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh-----cceeEEEe
Confidence            8899998764321  111 122234568899999999999999999999999999988877665432     46999999


Q ss_pred             ccCCCEEEEEEeCCeEEEEeC
Q 024451          194 SISGRLLFAGYSNGDCYVWDT  214 (267)
Q Consensus       194 s~~~~~l~~g~~dg~i~i~d~  214 (267)
                      +|+.+.+|+++.|+.|.+|++
T Consensus       302 spd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  302 SPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCCCchhhhccCCceEEeeec
Confidence            999999999999999999986

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=4.7e-14  Score=124.59  Aligned_cols=255  Identities=16%  Similarity=0.162  Sum_probs=157.3

Q ss_pred             eeeC-CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC--C
Q 024451            3 CAFS-PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT--G   79 (267)
Q Consensus         3 ~~~~-~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~   79 (267)
                      ++.+ +.+.+++|||.||+|++|+...-....+......++....+.+.++...+.++ .+|.++.||.|++.+++.  .
T Consensus      1054 ~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~ 1132 (1431)
T KOG1240|consen 1054 LAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-QFAVSTKDGSVRVLRIDHYNV 1132 (1431)
T ss_pred             eeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-eEEEEcCCCeEEEEEcccccc
Confidence            3444 56699999999999999998763322233334445544567778888777654 678889999999998875  2


Q ss_pred             eeEEEeCCccccCC-ccceEEEE-EeCCCC-eEEEEecCCCeEEEEeCCCcccceE-EeeccccceeEEEEecCCCEEEE
Q 024451           80 LRTSVFGGEFQSGH-TADVLSVS-ISGSNS-RMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRFGT  155 (267)
Q Consensus        80 ~~~~~~~~~~~~~~-~~~i~~~~-~~~~~~-~~~~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~  155 (267)
                      ...........+.+ .+.+.++. +..... ..++.+..-+.|..||++......+ +.....+.|++++.+|.++.++.
T Consensus      1133 ~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1133 SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred             ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEE
Confidence            22222111211222 22232222 221122 3677888888999999985432211 22223467999999999999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC---CCEEEE-EE-eCCeEEEEeCCccceee--ecc----
Q 024451          156 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---GRLLFA-GY-SNGDCYVWDTLLAKVVL--NLG----  224 (267)
Q Consensus       156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~-g~-~dg~i~i~d~~~~~~~~--~~~----  224 (267)
                      |...|.+-+||++-+..+..+.    .....++..++.+|-   ....++ |+ ..+.|.+|++..+..-.  ...    
T Consensus      1213 Gts~G~l~lWDLRF~~~i~sw~----~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p 1288 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLRFRVPILSWE----HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAP 1288 (1431)
T ss_pred             ecCCceEEEEEeecCceeeccc----CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCc
Confidence            9999999999998765443321    122245666666543   344444 44 57899999987652111  000    


Q ss_pred             ---cc-c-----CCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          225 ---SL-Q-----NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       225 ---~~-~-----~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                         .. +     +.+.-+....++..-+.++.+|+.|..||.||...
T Consensus      1289 ~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1289 ILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             chhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence               00 0     02222233344444466888999999999999743

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.65  E-value=3.5e-14  Score=108.71  Aligned_cols=213  Identities=18%  Similarity=0.232  Sum_probs=154.8

Q ss_pred             eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC
Q 024451           46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  125 (267)
Q Consensus        46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~  125 (267)
                      ..+|+|-+|+++. ..++.+.....|.||.......-.  .......|...++.++|.+... .+++++.|..-++|...
T Consensus        10 ~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~--~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen   10 LEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWE--PAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             cCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCce--eceehhhhCcceeEEeecCCCC-ceeEccCCCCccccccC
Confidence            3579999999976 468888888899999876543110  1122356889999999997654 57899999999999874


Q ss_pred             Ccc--cceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE
Q 024451          126 VAS--RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG  203 (267)
Q Consensus       126 ~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g  203 (267)
                      ...  ++.-.+..++..+.++.|+|.++.||+|+.-+.|.||-++..+.=-+. ++........|.++.|+|++-.+++|
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs-KhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS-KHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh-hhhCCccccceeeeeccCCcceeccc
Confidence            332  233345568889999999999999999999999999988754321110 11112233468999999999999999


Q ss_pred             EeCCeEEEEeCCccce-------------eeecccccC-CccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          204 YSNGDCYVWDTLLAKV-------------VLNLGSLQN-SHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       204 ~~dg~i~i~d~~~~~~-------------~~~~~~~~~-~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      +.|+..++|.......             .+.....+. ...+.+..+.|+|+|+-|+=.++|..+.+=|..+-
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            9999999997532111             000000011 34578999999999999999999999998876543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=4.9e-13  Score=102.41  Aligned_cols=236  Identities=12%  Similarity=0.206  Sum_probs=149.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEE-EeeCC------CeEEEE
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI-TSSGD------QTCVLW   74 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~d------~~v~iw   74 (267)
                      +++|+-|-..++.|..+| .+||++++-.+.     ..+....-.-.+.-+.| ..  ++++ .|+.+      +.|.||
T Consensus        10 svs~NQD~ScFava~~~G-friyn~~P~ke~-----~~r~~~~~G~~~veMLf-R~--N~laLVGGg~~pky~pNkviIW   80 (346)
T KOG2111|consen   10 SVSFNQDHSCFAVATDTG-FRIYNCDPFKES-----ASRQFIDGGFKIVEMLF-RS--NYLALVGGGSRPKYPPNKVIIW   80 (346)
T ss_pred             EEEEccCCceEEEEecCc-eEEEecCchhhh-----hhhccccCchhhhhHhh-hh--ceEEEecCCCCCCCCCceEEEE
Confidence            467888888888887776 899998752111     00101000011111112 11  2333 33332      579999


Q ss_pred             eCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc--ccceeEEEEecCCCE
Q 024451           75 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFPDGNR  152 (267)
Q Consensus        75 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~  152 (267)
                      |-..+..+..+      .-..+|.++.+..  ++++ . -..+.|.||......+.++.+..-  .....++.-..+..+
T Consensus        81 DD~k~~~i~el------~f~~~I~~V~l~r--~riV-v-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   81 DDLKERCIIEL------SFNSEIKAVKLRR--DRIV-V-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ecccCcEEEEE------EeccceeeEEEcC--CeEE-E-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            95544444333      2356788888864  3333 2 345689999886544555554322  223333332323445


Q ss_pred             EEEee-CCCcEEEEeCCCCeee-EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC-eEEEEeCCccceeeecccccCC
Q 024451          153 FGTGS-DDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQNS  229 (267)
Q Consensus       153 l~~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~  229 (267)
                      ||.-| .-|.|+|-|+...+.- ..+...    +...|.+++.+.+|..+|+++..| -|+|||.+.++.+.++.+  ..
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~A----H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR--G~  224 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINA----HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR--GV  224 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEc----ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec--CC
Confidence            55433 5689999998765441 122222    234699999999999999999998 579999999988877643  33


Q ss_pred             ccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          230 HEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ....|.+++|||+..+||+.|.-|++.||.+..
T Consensus       225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            456799999999999999999999999998743

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=2.3e-14  Score=112.66  Aligned_cols=212  Identities=15%  Similarity=0.205  Sum_probs=149.7

Q ss_pred             cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC------eeEEEeCCccccCCccceEEEEEeCCCCeEEEE
Q 024451           39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS  112 (267)
Q Consensus        39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s  112 (267)
                      .+.+.+|.+.|.++.|+.. +++|++|+.|..+++|+++..      +++...    ...|...|+++.|.. ..+.+.+
T Consensus        49 qKD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~----~~~H~SNIF~L~F~~-~N~~~~S  122 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM----EHPHRSNIFSLEFDL-ENRFLYS  122 (609)
T ss_pred             hhhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceec----cCccccceEEEEEcc-CCeeEec
Confidence            3457899999999999986 689999999999999999643      222222    135778999999986 4567789


Q ss_pred             ecCCCeEEEEeCCCcccceEEeeccc---cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCe-eeEEEEeecCCCCCCcE
Q 024451          113 GSCDSTARLWDTRVASRAVRTFHGHE---GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHV  188 (267)
Q Consensus       113 ~~~d~~i~iwd~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v  188 (267)
                      |+.+++|...|++. ...+..+ .|+   +.|+.+..+|..+.|++.+.++.|.+||.+..+ ....+..   .+.....
T Consensus       123 G~~~~~VI~HDiEt-~qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~---AN~~~~F  197 (609)
T KOG4227|consen  123 GERWGTVIKHDIET-KQSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP---ANSGKNF  197 (609)
T ss_pred             CCCcceeEeeeccc-ceeeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee---cCCCccc
Confidence            99999999999974 3334433 343   489999999999999999999999999998755 2222221   1222346


Q ss_pred             EEEEEccCCC-EEEEEEeCCeEEEEeCCcccee-eec---ccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          189 TSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVV-LNL---GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       189 ~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~-~~~---~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ..+-|+|... +|++.+..+.+.+||.+..... ...   ..++. ......++.|+|+|+.|++--...--.+|++..
T Consensus       198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~-~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S  275 (609)
T KOG4227|consen  198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQ-ENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS  275 (609)
T ss_pred             eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcc-cchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence            7888998765 5677778899999997644321 111   11111 122346788999999888755555556666644

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.63  E-value=2.1e-13  Score=104.50  Aligned_cols=241  Identities=15%  Similarity=0.209  Sum_probs=166.1

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC-e
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-L   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~   80 (267)
                      |-||++|++.++.+-....|.||.....+    ......++..|...|+.+.|+|.. +.|++++.|..-.+|....+ .
T Consensus        15 chAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   15 CHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             eeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCCCCe
Confidence            45799999999999999999999876432    234567889999999999999965 57999999999999988433 2


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc---eEEeeccccceeEEEEecCCCEEEEee
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~  157 (267)
                      -..++.   ...++....++.|+|.+ +.|++|+.-..|.||-.+....-   ...-+.++..|.+++|+|++-++++|+
T Consensus        90 Wkptlv---LlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   90 WKPTLV---LLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             ecccee---EEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence            222211   12467788999999754 56889999999999876643321   112235678899999999999999999


Q ss_pred             CCCcEEEEeCCCCeeeEE---------------EEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc-eee
Q 024451          158 DDGTCRLFDIRTGHQLQV---------------YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK-VVL  221 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~---------------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-~~~  221 (267)
                      .|++.|+|..-- +.+..               +..+. ....+.+..+.|+|+|..|+=.+.|+.+.+-|..... .+.
T Consensus       166 ~D~k~rVfSayI-K~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~  243 (361)
T KOG1523|consen  166 TDGKCRVFSAYI-KGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQ  243 (361)
T ss_pred             cCcceeEEEEee-eccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhcc
Confidence            999999987421 00000               00000 0233579999999999999999999999999875543 122


Q ss_pred             ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEE
Q 024451          222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW  258 (267)
Q Consensus       222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w  258 (267)
                      ...   ..+ -+..++.|-.+ +.++.+++|..-.++
T Consensus       244 ~~~---~~~-lP~ls~~~ise-~~vv~ag~~c~P~lf  275 (361)
T KOG1523|consen  244 SVA---TAQ-LPLLSVSWISE-NSVVAAGYDCGPVLF  275 (361)
T ss_pred             chh---hcc-CCceeeEeecC-CceeecCCCCCceEE
Confidence            111   112 34555555432 334445555443333

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=2.9e-13  Score=115.90  Aligned_cols=249  Identities=18%  Similarity=0.280  Sum_probs=154.3

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      |.+++|.++++++|..||.|.+|.--... ..  .--...+.=|..+|.+++|++++ .+|+||+..+.+.+|.++++.+
T Consensus       210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-~~--~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k  285 (792)
T KOG1963|consen  210 CVALSPNERYLAAGDSDGRILVWRDFGSS-DD--SETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK  285 (792)
T ss_pred             eEEeccccceEEEeccCCcEEEEeccccc-cc--cccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc
Confidence            46799999999999999999999743211 11  11223455688999999999976 5899999999999999999873


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc--cceEEee--------ccccceeEEEEecCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFH--------GHEGDVNTVKFFPDGN  151 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~--------~~~~~i~~~~~~~~~~  151 (267)
                      . .+     +.-...|..+.++|.+ ...+....|..|.+-......  ..+.-+.        ...+-...+.++|.-+
T Consensus       286 q-fL-----PRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  286 Q-FL-----PRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             c-cc-----cccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence            2 22     3345678889898654 455666778888877542111  0011010        0122244566666555


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEE------------------------------------------------------
Q 024451          152 RFGTGSDDGTCRLFDIRTGHQLQVYY------------------------------------------------------  177 (267)
Q Consensus       152 ~l~~~~~d~~i~iwd~~~~~~~~~~~------------------------------------------------------  177 (267)
                      .++-.+..+.|.+||+-+.+.+..+.                                                      
T Consensus       359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence            56666666677777665432221110                                                      


Q ss_pred             ---------eecCCCCCCcEEEEEE-ccCCC-EEEEEEeCCeEEEEeCCccceeee------cccccCCccceEEEEEEC
Q 024451          178 ---------QQHGENEIPHVTSIAF-SISGR-LLFAGYSNGDCYVWDTLLAKVVLN------LGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       178 ---------~~~~~~~~~~v~~~~~-s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~------~~~~~~~~~~~v~~~~~~  240 (267)
                               ......+.....+.++ ++... .+++++.||.+++|-....+...+      ...+...|..++.+++|+
T Consensus       439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs  518 (792)
T KOG1963|consen  439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS  518 (792)
T ss_pred             CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence                     0000001111222333 33333 677888999999997633221111      001112478899999999


Q ss_pred             CCCCeEEEeECCCcEEEEecCc
Q 024451          241 ADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       241 p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      -||..|+ .|.|++|.+|++..
T Consensus       519 ~dGslla-~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  519 QDGSLLA-VSFDDTITIWDYDT  539 (792)
T ss_pred             CCCcEEE-EecCCEEEEecCCC
Confidence            9997776 56799999999876

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=7.5e-14  Score=108.65  Aligned_cols=194  Identities=15%  Similarity=0.217  Sum_probs=137.1

Q ss_pred             eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc
Q 024451           48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  127 (267)
Q Consensus        48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~  127 (267)
                      .+.-++|++.- .-++.+..|-.|++||-...... .+    ....+..+.+++|-|.....++.|+. +.|.+|.....
T Consensus       100 dlr~~aWhqH~-~~fava~nddvVriy~ksst~pt-~L----ks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~t  172 (445)
T KOG2139|consen  100 DLRGVAWHQHI-IAFAVATNDDVVRIYDKSSTCPT-KL----KSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRT  172 (445)
T ss_pred             ceeeEeechhh-hhhhhhccCcEEEEeccCCCCCc-ee----cchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcc
Confidence            45668888843 45778999999999998763322 22    12345679999999988777766665 46889975422


Q ss_pred             cc-------------ceEEeeccccceeEEEEecCCCEEEEee-CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEE
Q 024451          128 SR-------------AVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  193 (267)
Q Consensus       128 ~~-------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  193 (267)
                      ..             .+.+..+| ..|+++.|.+||..+++++ .|..|.|||.+++.......     ...+.++-+.|
T Consensus       173 ln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-----~glgg~slLkw  246 (445)
T KOG2139|consen  173 LNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-----KGLGGFSLLKW  246 (445)
T ss_pred             cccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-----cCCCceeeEEE
Confidence            11             11223355 5799999999999999887 57899999999987665431     12346889999


Q ss_pred             ccCCCEEEEEEeCCeEEEEeCCc-cceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          194 SISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       194 s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ||++.+|+++.-|+..++|+... ......     ....+.|...+|+|.|++|+-.. -|.-++|.+
T Consensus       247 SPdgd~lfaAt~davfrlw~e~q~wt~erw-----~lgsgrvqtacWspcGsfLLf~~-sgsp~lysl  308 (445)
T KOG2139|consen  247 SPDGDVLFAATCDAVFRLWQENQSWTKERW-----ILGSGRVQTACWSPCGSFLLFAC-SGSPRLYSL  308 (445)
T ss_pred             cCCCCEEEEecccceeeeehhcccceecce-----eccCCceeeeeecCCCCEEEEEE-cCCceEEEE
Confidence            99999999999999999996433 222211     12445899999999999876443 255566653

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=1.3e-13  Score=108.08  Aligned_cols=219  Identities=16%  Similarity=0.140  Sum_probs=156.2

Q ss_pred             eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC--CeEEEEeCCCCeeEEEeCCc
Q 024451           11 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGE   88 (267)
Q Consensus        11 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~   88 (267)
                      .|+++-.+|.+.+|....+.-...  ++ ..++-+ ..+..+.-.+.....+++|+..  +.++|||+++..++......
T Consensus       117 ~Litc~~sG~l~~~~~k~~d~hss--~l-~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv  192 (412)
T KOG3881|consen  117 TLITCVSSGNLQVRHDKSGDLHSS--KL-IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV  192 (412)
T ss_pred             EEEEEecCCcEEEEeccCCccccc--cc-eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence            466677889999999875432111  11 122222 4456666667666677779999  88999999987544332110


Q ss_pred             cc--cCCcc--ceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEE
Q 024451           89 FQ--SGHTA--DVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR  163 (267)
Q Consensus        89 ~~--~~~~~--~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  163 (267)
                      -.  .+-.-  .+..+.|.+. ..+.|+++..-+.+|+||.+.+++++..+.--+.+++++...|.++.+++|-.-+.+.
T Consensus       193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~  272 (412)
T KOG3881|consen  193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLA  272 (412)
T ss_pred             CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhh
Confidence            00  01111  2345566643 2467899999999999999988888888887788999999999999999999999999


Q ss_pred             EEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC
Q 024451          164 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  242 (267)
Q Consensus       164 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  242 (267)
                      .||++.++.....++.    -.+.++++..+|+.+++++++-|+.|+|+|.++.+++.+.     .-...++++-+.++
T Consensus       273 ~FD~r~~kl~g~~~kg----~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-----YvKs~lt~il~~~~  342 (412)
T KOG3881|consen  273 KFDLRGGKLLGCGLKG----ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-----YVKSRLTFILLRDD  342 (412)
T ss_pred             eecccCceeeccccCC----ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-----hhhccccEEEecCC
Confidence            9999988776553332    2346889999999999999999999999999987766543     22345566666544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.60  E-value=3.2e-14  Score=118.77  Aligned_cols=195  Identities=16%  Similarity=0.339  Sum_probs=147.4

Q ss_pred             eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc
Q 024451           48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  127 (267)
Q Consensus        48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~  127 (267)
                      .|+.++|-|++.++++++  +..+.+||.+.+.....+     .+|.+.|.+++++. +++.|++|+.|+.|.+|..+-.
T Consensus        14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqtL-----KgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klE   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQPL-----KGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLE   85 (1081)
T ss_pred             chheeEECCCCceEEEec--CCEEEEEeCCCccccccc-----ccccceEEEEEEcc-CCceeccCCCceeEEEeccccc
Confidence            788999999987766544  457899999988766655     58999999999995 5778999999999999986532


Q ss_pred             ccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC
Q 024451          128 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  207 (267)
Q Consensus       128 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg  207 (267)
                      .  +-.+ .|++.|.|+.|.|....+++|+-. ..-+|........ .    +.  ....+.+.+|..||++++.|-.+|
T Consensus        86 G--~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K----~k--ss~R~~~CsWtnDGqylalG~~nG  154 (1081)
T KOG1538|consen   86 G--ILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-K----HK--SSSRIICCSWTNDGQYLALGMFNG  154 (1081)
T ss_pred             c--eeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-h----hh--hheeEEEeeecCCCcEEEEeccCc
Confidence            2  1222 589999999999998899988753 4567876542211 1    11  123578889999999999999999


Q ss_pred             eEEEEeCCccceeeecccccCCccceEEEEEECCCC-----CeEEEeECCCcEEEEecCce
Q 024451          208 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG-----SALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       208 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~l~sgs~dg~i~~w~~~~~  263 (267)
                      .|.+-+....+.. .+. .+.+.+++|++++|+|+.     ..++...+..++.++.+.|-
T Consensus       155 TIsiRNk~gEek~-~I~-Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~  213 (1081)
T KOG1538|consen  155 TISIRNKNGEEKV-KIE-RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK  213 (1081)
T ss_pred             eEEeecCCCCcce-EEe-CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence            9998874332222 121 234567899999999973     47899999999999988764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.60  E-value=1.3e-13  Score=121.87  Aligned_cols=218  Identities=18%  Similarity=0.212  Sum_probs=144.6

Q ss_pred             cccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE-EEeCCcccc-CCccceEEEEEeCCCCeEEEEec
Q 024451           37 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT-SVFGGEFQS-GHTADVLSVSISGSNSRMFVSGS  114 (267)
Q Consensus        37 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~s~~  114 (267)
                      .+..++..|...|..++.++....+++|||.||+||+||...-... ..+..+.+. ....++..+...+ ++..++.++
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t 1117 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVST 1117 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEc
Confidence            4566788999999988888766679999999999999998642111 111111111 1234555666654 345678889


Q ss_pred             CCCeEEEEeCCCcc--c----ceEEeeccc-cc-eeEEEEec-CCC-EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCC
Q 024451          115 CDSTARLWDTRVAS--R----AVRTFHGHE-GD-VNTVKFFP-DGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE  184 (267)
Q Consensus       115 ~d~~i~iwd~~~~~--~----~~~~~~~~~-~~-i~~~~~~~-~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  184 (267)
                      .||.|++..+....  +    ..+....+. +. +..-+|.. .+. .++.+..-+.|..||+++.........   ...
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~---~~~ 1194 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN---QLR 1194 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc---Ccc
Confidence            99999999876411  1    112222222 22 33344433 234 677778889999999987654432221   222


Q ss_pred             CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCC---eEEE-eE-CCCcEEEEe
Q 024451          185 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS---ALCT-GS-WDTNLKIWA  259 (267)
Q Consensus       185 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~l~s-gs-~dg~i~~w~  259 (267)
                      -+.|++++.+|.+++++.|++.|.+.+||++-+..+...   ..++..++..++.+|-..   ..++ ++ ..+.|.+|.
T Consensus      1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw---~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW---EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc---cCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence            346999999999999999999999999999877666544   345567888888877543   4444 44 478899998


Q ss_pred             cC
Q 024451          260 FG  261 (267)
Q Consensus       260 ~~  261 (267)
                      +.
T Consensus      1272 ~~ 1273 (1431)
T KOG1240|consen 1272 ME 1273 (1431)
T ss_pred             cc
Confidence            73

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.60  E-value=1.2e-14  Score=116.35  Aligned_cols=236  Identities=17%  Similarity=0.204  Sum_probs=156.8

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCC--------------------------------CCCcccccccCCeeeE
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD--------------------------------GNLPVSRMLSGHKGYV   49 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~--------------------------------~~~~~~~~~~~h~~~v   49 (267)
                      .+.++.+|++|+-||.-|.|..+|.....-..                                ........++.| ..|
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~-~~v  212 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH-IRV  212 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc-Cch
Confidence            45688899999999999999999876421000                                000001111222 345


Q ss_pred             EEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc
Q 024451           50 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR  129 (267)
Q Consensus        50 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~  129 (267)
                      ..+.|.|.. -+|++++..|-++--|+.+|..+..+.     -..+.+..++-+|- +..+-+|..+|+|.+|.... ..
T Consensus       213 ~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~-----t~~G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~s-ke  284 (545)
T KOG1272|consen  213 ARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIR-----TGAGRTDVMKQNPY-NAVIHLGHSNGTVSLWSPNS-KE  284 (545)
T ss_pred             hhhcccchh-heeeecccCCceEEEeechhhhhHHHH-----ccCCccchhhcCCc-cceEEEcCCCceEEecCCCC-cc
Confidence            557788854 478888999999999998887554442     12334445555554 44677899999999999865 44


Q ss_pred             ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeE
Q 024451          130 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC  209 (267)
Q Consensus       130 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i  209 (267)
                      ++..+..|.++|.++++.++|.|++|.|.|+.++|||++.-.++..+...      .+...+++|..| .||+ +..-.+
T Consensus       285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp------~~a~~ls~Sqkg-lLA~-~~G~~v  356 (545)
T KOG1272|consen  285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP------HPASNLSLSQKG-LLAL-SYGDHV  356 (545)
T ss_pred             hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC------CCcccccccccc-ceee-ecCCee
Confidence            66667789999999999999999999999999999999987665544332      235677777554 3444 455678


Q ss_pred             EEEeCCcc-ceeeecccccCCccceEEEEEECCCCCeEEEeECCCc
Q 024451          210 YVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN  254 (267)
Q Consensus       210 ~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~  254 (267)
                      .||.-... ........+.-...++|..+.|.|-...|-.|-..|-
T Consensus       357 ~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~  402 (545)
T KOG1272|consen  357 QIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI  402 (545)
T ss_pred             eeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence            99952211 1111111111223458999999998777766655443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=4e-13  Score=113.27  Aligned_cols=212  Identities=14%  Similarity=0.103  Sum_probs=130.8

Q ss_pred             ceeeCCCCCeEEEcc---CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC--eEEEEeC
Q 024451            2 TCAFSPTGQSVACGG---LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDI   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~---~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~   76 (267)
                      ..+|+|||+.|+..+   .+..+.+|++....     ......+.+|   +....|+|++..++++.+.++  .|.+||+
T Consensus       203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-----~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~  274 (429)
T PRK03629        203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGA-----VRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDL  274 (429)
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-----eEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            467999999998754   34578888875421     1122223344   345789998865555555555  5888999


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEE--eCCCcccceEEeeccccceeEEEEecCCCEEE
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW--DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  154 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  154 (267)
                      +++.......      +...+....|+|.+..++.+...++..++|  |+..  .....+..+........|+|+|++++
T Consensus       275 ~tg~~~~lt~------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~--g~~~~lt~~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        275 ASGQIRQVTD------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING--GAPQRITWEGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             CCCCEEEccC------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC--CCeEEeecCCCCccCEEECCCCCEEE
Confidence            8875443321      223456778887655454444445555555  5432  22333433344456789999999988


Q ss_pred             EeeCC---CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCe---EEEEeCCccceeeecccccC
Q 024451          155 TGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD---CYVWDTLLAKVVLNLGSLQN  228 (267)
Q Consensus       155 ~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~---i~i~d~~~~~~~~~~~~~~~  228 (267)
                      ..+.+   ..|.+||+.+++... +...      .......|+|+|+.|+..+.++.   ++++++.. +....+    .
T Consensus       347 ~~~~~~g~~~I~~~dl~~g~~~~-Lt~~------~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-~~~~~l----~  414 (429)
T PRK03629        347 MVSSNGGQQHIAKQDLATGGVQV-LTDT------FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARL----P  414 (429)
T ss_pred             EEEccCCCceEEEEECCCCCeEE-eCCC------CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CCeEEC----c
Confidence            76543   358889998775432 2211      11235679999999999887753   67777632 222222    2


Q ss_pred             CccceEEEEEECC
Q 024451          229 SHEGRITCLGLSA  241 (267)
Q Consensus       229 ~~~~~v~~~~~~p  241 (267)
                      .|.+.+...+|+|
T Consensus       415 ~~~~~~~~p~Wsp  427 (429)
T PRK03629        415 ATDGQVKFPAWSP  427 (429)
T ss_pred             cCCCCcCCcccCC
Confidence            4667788888887

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=4e-12  Score=97.53  Aligned_cols=180  Identities=16%  Similarity=0.196  Sum_probs=122.9

Q ss_pred             CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC-CeeEEEeCCccccCCccc
Q 024451           18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFGGEFQSGHTAD   96 (267)
Q Consensus        18 d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~   96 (267)
                      -+.|-|||=..    ..   +. ....-+.+|.+|.+.++   .|+.. .++.|.+|.... .++...+.....   ...
T Consensus        74 pNkviIWDD~k----~~---~i-~el~f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~et~~N---PkG  138 (346)
T KOG2111|consen   74 PNKVIIWDDLK----ER---CI-IELSFNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVIETRSN---PKG  138 (346)
T ss_pred             CceEEEEeccc----Cc---EE-EEEEeccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeeeecccC---CCc
Confidence            46789998211    11   11 11234678999988774   34333 577899999873 344444432211   111


Q ss_pred             eEEEEEeCCCCeEEEE-ecCCCeEEEEeCCCccc-ceEEeeccccceeEEEEecCCCEEEEeeCCCc-EEEEeCCCCeee
Q 024451           97 VLSVSISGSNSRMFVS-GSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQL  173 (267)
Q Consensus        97 i~~~~~~~~~~~~~~s-~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~  173 (267)
                      ..+++-. .+..+++- |-.-|.|+|-|+..... .-..+.+|...|.|++...+|..+||+|..|+ |||||..++..+
T Consensus       139 lC~~~~~-~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l  217 (346)
T KOG2111|consen  139 LCSLCPT-SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL  217 (346)
T ss_pred             eEeecCC-CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe
Confidence            2233222 22333333 33558999999864332 23667899999999999999999999999887 899999999888


Q ss_pred             EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451          174 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  216 (267)
Q Consensus       174 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~  216 (267)
                      ..+...   .....+.+++|||+..+|++++..|+|+||.++.
T Consensus       218 ~E~RRG---~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  218 QELRRG---VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             eeeecC---CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            776442   2345799999999999999999999999998754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=2.1e-12  Score=109.01  Aligned_cols=193  Identities=20%  Similarity=0.225  Sum_probs=122.7

Q ss_pred             ccCCeeeEEEEEEecCCCeeEEEeeC-C--CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451           42 LSGHKGYVSCCQYVPDEDTHLITSSG-D--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  118 (267)
Q Consensus        42 ~~~h~~~v~~~~~~~~~~~~l~s~~~-d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~  118 (267)
                      +..+...+.+.+|+|++. .|+..+. +  ..|.+||+.++.......      .........|+|...+++++.+.++.
T Consensus       191 l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~~------~~g~~~~~~~SPDG~~la~~~~~~g~  263 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVAN------FKGSNSAPAWSPDGRTLAVALSRDGN  263 (427)
T ss_pred             eccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEeec------CCCCccceEECCCCCEEEEEEccCCC
Confidence            445677888999999875 4554443 2  459999999876544321      12234567888766666567778887


Q ss_pred             EEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-CCcEEEEeCC--CCeeeEEEEeecCCCCCCcEEEEEEcc
Q 024451          119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIR--TGHQLQVYYQQHGENEIPHVTSIAFSI  195 (267)
Q Consensus       119 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~  195 (267)
                      ..+|.+.........+..+........|+|+|+.++..+. ++...+|.+.  +++.......  .    .......|+|
T Consensus       264 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~--g----~~~~~~~~Sp  337 (427)
T PRK02889        264 SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT--G----SYNTSPRISP  337 (427)
T ss_pred             ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC--C----CCcCceEECC
Confidence            7777543323334455445555667899999998876654 4666777653  3332222111  1    1234568999


Q ss_pred             CCCEEEEEEeCC---eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451          196 SGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  253 (267)
Q Consensus       196 ~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg  253 (267)
                      +|++|+..+.++   .|++||+..++... +.   ..  .......|+|||++|+..+.++
T Consensus       338 DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt---~~--~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        338 DGKLLAYISRVGGAFKLYVQDLATGQVTA-LT---DT--TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CCCEEEEEEccCCcEEEEEEECCCCCeEE-cc---CC--CCccCceECCCCCEEEEEEecC
Confidence            999998776554   69999987665332 11   11  1235679999999988776544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=4.1e-12  Score=107.63  Aligned_cols=215  Identities=15%  Similarity=0.105  Sum_probs=136.0

Q ss_pred             CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee---CCCeEEEEeCCCCeeEEEeCCccccCCcc
Q 024451           19 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLRTSVFGGEFQSGHTA   95 (267)
Q Consensus        19 ~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~   95 (267)
                      ..|.++|....        ..+.+..|...+.+.+|+|++. .|+..+   .+..|.+||+.++......      .+..
T Consensus       182 ~~l~~~d~dg~--------~~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l~------~~~g  246 (435)
T PRK05137        182 KRLAIMDQDGA--------NVRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELVG------NFPG  246 (435)
T ss_pred             eEEEEECCCCC--------CcEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEee------cCCC
Confidence            36777776432        1233556778899999999875 455544   2468999999887654332      2334


Q ss_pred             ceEEEEEeCCCCeEEEEecCCCe--EEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-CC--cEEEEeCCCC
Q 024451           96 DVLSVSISGSNSRMFVSGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTG  170 (267)
Q Consensus        96 ~i~~~~~~~~~~~~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~  170 (267)
                      .+....|+|.+.+++++.+.++.  |.+||+..  .....+..+........|+|+|+.++..+. ++  .|.++|+..+
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS--GTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCC--CceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence            45677888766666666666665  66667753  234555555555678999999998887663 33  5778887765


Q ss_pred             eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC---CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEE
Q 024451          171 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC  247 (267)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  247 (267)
                      +.... ...     ........|+|+|+.|+....+   ..|.+||....... .+   .  ....+....|+|||+.|+
T Consensus       325 ~~~~l-t~~-----~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~l---t--~~~~~~~p~~spDG~~i~  392 (435)
T PRK05137        325 NPRRI-SFG-----GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-IL---T--SGFLVEGPTWAPNGRVIM  392 (435)
T ss_pred             CeEEe-ecC-----CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-ec---c--CCCCCCCCeECCCCCEEE
Confidence            43322 211     1234567899999999876543   36788886543321 11   1  112356789999999987


Q ss_pred             EeECC-C-----cEEEEecCc
Q 024451          248 TGSWD-T-----NLKIWAFGG  262 (267)
Q Consensus       248 sgs~d-g-----~i~~w~~~~  262 (267)
                      ..+.+ +     .+.++++.+
T Consensus       393 ~~~~~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        393 FFRQTPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             EEEccCCCCCcceEEEEECCC
Confidence            65543 2     355556544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.2e-12  Score=110.74  Aligned_cols=212  Identities=16%  Similarity=0.182  Sum_probs=128.4

Q ss_pred             ceeeCCCCCeEEEccCC---CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC--eEEEEeC
Q 024451            2 TCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDI   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~   76 (267)
                      ..+|+|||+.|+..+.+   ..|.+||+....        ...+..+.+...+.+|+|++..++++.+.++  .|.+||+
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--------~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~  279 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--------RELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL  279 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCC--------EEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence            46799999999987743   468899985421        1112233344457899998876666666665  5999999


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe--EEEEeCCCcccceEEeeccccceeEEEEecCCCEEE
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  154 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  154 (267)
                      .++......      .+........|++.+..++.+...++.  |.++++...  ....+..+.......+|+|+|++++
T Consensus       280 ~~g~~~~lt------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g--~~~~lt~~g~~~~~~~~SpDG~~Ia  351 (433)
T PRK04922        280 GSRQLTRLT------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG--SAERLTFQGNYNARASVSPDGKKIA  351 (433)
T ss_pred             CCCCeEECc------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC--CeEEeecCCCCccCEEECCCCCEEE
Confidence            887543321      222233467788755444444445555  555565432  2222322333445789999999988


Q ss_pred             EeeCCC---cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC---CeEEEEeCCccceeeecccccC
Q 024451          155 TGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQN  228 (267)
Q Consensus       155 ~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~  228 (267)
                      ..+.++   .|.+||+.+++.. .+..  .    .......|+|+|+.++..+.+   +.|++++.... ....+    .
T Consensus       352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt~--~----~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l----~  419 (433)
T PRK04922        352 MVHGSGGQYRIAVMDLSTGSVR-TLTP--G----SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRL----V  419 (433)
T ss_pred             EEECCCCceeEEEEECCCCCeE-ECCC--C----CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEc----c
Confidence            765433   6999999876543 2211  1    123456899999988777653   46888887432 22222    2


Q ss_pred             CccceEEEEEECC
Q 024451          229 SHEGRITCLGLSA  241 (267)
Q Consensus       229 ~~~~~v~~~~~~p  241 (267)
                      .+.+.+...+|+|
T Consensus       420 ~~~g~~~~p~wsp  432 (433)
T PRK04922        420 SADGEVREPAWSP  432 (433)
T ss_pred             cCCCCCCCCccCC
Confidence            2345566677776

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=5.2e-12  Score=106.57  Aligned_cols=216  Identities=15%  Similarity=0.161  Sum_probs=133.9

Q ss_pred             eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEe--eCCCeEEEEeCCCCeeEEEeCCccccCCccce
Q 024451           20 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS--SGDQTCVLWDITTGLRTSVFGGEFQSGHTADV   97 (267)
Q Consensus        20 ~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i   97 (267)
                      .|.++|.+...        .+.+..+...+.+.+|+|++..++++.  +.+..|.+||+.++........   .++   .
T Consensus       180 ~l~~~d~dg~~--------~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~---~~~---~  245 (429)
T PRK03629        180 ELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF---PRH---N  245 (429)
T ss_pred             eEEEEcCCCCC--------CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC---CCC---c
Confidence            67788765422        122334567788999999876443332  2345799999988754433211   122   3


Q ss_pred             EEEEEeCCCCeEEEEecCCC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC-CcEEEE--eCCCCee
Q 024451           98 LSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-GTCRLF--DIRTGHQ  172 (267)
Q Consensus        98 ~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~iw--d~~~~~~  172 (267)
                      ..+.|+|.+.+++.+.+.++  .|.+||+...  ....+..+...+....|+|+|+.++..+.+ +...+|  |+.+++.
T Consensus       246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg--~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASG--QIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             CCeEECCCCCEEEEEEcCCCCcEEEEEECCCC--CEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            35778876655555555555  5888898642  234444444567889999999988877654 445555  6655543


Q ss_pred             eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC---CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEe
Q 024451          173 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  249 (267)
Q Consensus       173 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg  249 (267)
                      ... .. .    ........|+|+|++++....+   ..|++||+..++... +.   ..+  ......|+|||++|+..
T Consensus       324 ~~l-t~-~----~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt---~~~--~~~~p~~SpDG~~i~~~  391 (429)
T PRK03629        324 QRI-TW-E----GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LT---DTF--LDETPSIAPNGTMVIYS  391 (429)
T ss_pred             EEe-ec-C----CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eC---CCC--CCCCceECCCCCEEEEE
Confidence            222 11 1    1124567899999998776543   368889987665322 11   111  22457899999999998


Q ss_pred             ECCCc---EEEEecCce
Q 024451          250 SWDTN---LKIWAFGGY  263 (267)
Q Consensus       250 s~dg~---i~~w~~~~~  263 (267)
                      +.++.   +.+++++|.
T Consensus       392 s~~~~~~~l~~~~~~G~  408 (429)
T PRK03629        392 SSQGMGSVLNLVSTDGR  408 (429)
T ss_pred             EcCCCceEEEEEECCCC
Confidence            88775   566666553

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=2.1e-12  Score=100.68  Aligned_cols=234  Identities=20%  Similarity=0.280  Sum_probs=146.3

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-   80 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-   80 (267)
                      ++|++--..++++..|-+|++|+-....      +  ..+ ..-...|+|++|-|-....|+.|+..| |.||...... 
T Consensus       104 ~aWhqH~~~fava~nddvVriy~ksst~------p--t~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln  174 (445)
T KOG2139|consen  104 VAWHQHIIAFAVATNDDVVRIYDKSSTC------P--TKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN  174 (445)
T ss_pred             EeechhhhhhhhhccCcEEEEeccCCCC------C--ceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence            4566655568889999999999854311      1  111 123456999999997777777777665 7789765321 


Q ss_pred             ---eEEEeC---Cc--cccCCccceEEEEEeCCCCeEEEEec-CCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC
Q 024451           81 ---RTSVFG---GE--FQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN  151 (267)
Q Consensus        81 ---~~~~~~---~~--~~~~~~~~i~~~~~~~~~~~~~~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  151 (267)
                         .+....   .+  ...+| ..|.++.|.++.. .+++++ .|..|.|||+.++.+ +....--.+.+.-+.|+|++.
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~-~pL~~~glgg~slLkwSPdgd  251 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQK-IPLIPKGLGGFSLLKWSPDGD  251 (445)
T ss_pred             cccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCc-ccccccCCCceeeEEEcCCCC
Confidence               101000   01  11344 6789999997654 556666 456899999875443 211112246788999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc------------e
Q 024451          152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK------------V  219 (267)
Q Consensus       152 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~------------~  219 (267)
                      +|.++.-|+..++|+.......+.     -....+.|...+|+|+|++|+-.+.. .-++|.+.-..            .
T Consensus       252 ~lfaAt~davfrlw~e~q~wt~er-----w~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~  325 (445)
T KOG2139|consen  252 VLFAATCDAVFRLWQENQSWTKER-----WILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKR  325 (445)
T ss_pred             EEEEecccceeeeehhcccceecc-----eeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCccccee
Confidence            999999999999996543221111     12223478999999999987665433 33455432110            0


Q ss_pred             eeecccc--------cCCccceEEEEEECCCCCeEEEeECCCc
Q 024451          220 VLNLGSL--------QNSHEGRITCLGLSADGSALCTGSWDTN  254 (267)
Q Consensus       220 ~~~~~~~--------~~~~~~~v~~~~~~p~~~~l~sgs~dg~  254 (267)
                      +.....+        +....++..+++|.|.|++||+--+.+.
T Consensus       326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence            1000000        1112467899999999999998655443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.56  E-value=7.3e-14  Score=107.56  Aligned_cols=221  Identities=19%  Similarity=0.266  Sum_probs=139.9

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      |+|+|+|+++++.+.- .+.|=|...       ..+...+. --+.|.-+.|..+..-.|..+..|+.|.+|++...+--
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~t-------lq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSET-------LQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY   84 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccch-------hhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence            7899999999998766 455555432       11211111 12445556777765545556788899999999876544


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc-
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-  161 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-  161 (267)
                      ..+.     -....+.+++|+|++.+++.+...|-.|.+|.+.+..  ...++-....+..++|+|+|++.+.+++-.. 
T Consensus        85 ckId-----eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCk  157 (447)
T KOG4497|consen   85 CKID-----EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCK  157 (447)
T ss_pred             EEec-----cCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--eEEecccccCceeEEECCCCceeeeeecccHH
Confidence            4332     2345678899998877888888999999999987533  2222222334678999999999988875322 


Q ss_pred             --EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          162 --CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       162 --i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                        +.|...+.-..+..+     .......+.+.|+|||+.|+         +||.-....+...     ...-.+..++|
T Consensus       158 dyv~i~~c~~W~ll~~f-----~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aY-----e~~lG~k~v~w  218 (447)
T KOG4497|consen  158 DYVQISSCKAWILLKEF-----KLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAY-----ERGLGLKFVEW  218 (447)
T ss_pred             HHHHHHhhHHHHHHHhc-----CCCcccccCceECCCCcEEE---------Eecchhhheeeee-----eeccceeEEEe
Confidence              222111111111111     11122457889999988776         4553222222111     11235788999


Q ss_pred             CCCCCeEEEeECCCcEEEE
Q 024451          240 SADGSALCTGSWDTNLKIW  258 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w  258 (267)
                      +|-+++|+.|+.|+.+|+-
T Consensus       219 sP~~qflavGsyD~~lrvl  237 (447)
T KOG4497|consen  219 SPCNQFLAVGSYDQMLRVL  237 (447)
T ss_pred             ccccceEEeeccchhhhhh
Confidence            9999999999999998874

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.56  E-value=4e-11  Score=98.72  Aligned_cols=251  Identities=16%  Similarity=0.133  Sum_probs=144.8

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      .+|+|||+++..++.||.|.++|+....       ..+.++.... ...+++++++.-.+++...++.+.++|.++.+.+
T Consensus        42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~-------~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v  113 (369)
T PF02239_consen   42 LKFSPDGRYLYVANRDGTVSVIDLATGK-------VVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV  113 (369)
T ss_dssp             EE-TT-SSEEEEEETTSEEEEEETTSSS-------EEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred             EEecCCCCEEEEEcCCCeEEEEECCccc-------EEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence            4689999999999999999999987532       4444433333 4668899987544445567899999999998777


Q ss_pred             EEeCCccccC--CccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEe-eCC
Q 024451           83 SVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDD  159 (267)
Q Consensus        83 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d  159 (267)
                      ..++......  ...++..+..++....++++--..+.|-+-|.............-....+...|+|++++++.+ ..+
T Consensus       114 ~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s  193 (369)
T PF02239_consen  114 KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS  193 (369)
T ss_dssp             EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred             eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccc
Confidence            7664322111  3445667766665444444445557787777654322222222233456789999999987664 456


Q ss_pred             CcEEEEeCCCCeeeEEEEee------------cCCC--------------------------------------CCCcEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQ------------HGEN--------------------------------------EIPHVT  189 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~------------~~~~--------------------------------------~~~~v~  189 (267)
                      ..|-++|.++++........            |...                                      ...+ .
T Consensus       194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-l  272 (369)
T PF02239_consen  194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-L  272 (369)
T ss_dssp             TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--
T ss_pred             ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-c
Confidence            78999998877554332110            0000                                      0001 2


Q ss_pred             EEEEccCCCEEEEE----EeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC--cEEEEecCce
Q 024451          190 SIAFSISGRLLFAG----YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT--NLKIWAFGGY  263 (267)
Q Consensus       190 ~~~~s~~~~~l~~g----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg--~i~~w~~~~~  263 (267)
                      -+..+|+++++.+.    ...+.|.++|.++.+....+..   .-...+..+.|+++|+++....+++  .|.+||-..+
T Consensus       273 Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~---~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  273 FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP---GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL  349 (369)
T ss_dssp             -EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH---HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred             eeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec---cCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence            24558999999887    3458999999988766654421   1123488899999999776555544  6999987665


Q ss_pred             Ee
Q 024451          264 RR  265 (267)
Q Consensus       264 ~~  265 (267)
                      ..
T Consensus       350 ~~  351 (369)
T PF02239_consen  350 KE  351 (369)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

...

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.55  E-value=1.5e-12  Score=97.74  Aligned_cols=154  Identities=22%  Similarity=0.407  Sum_probs=102.9

Q ss_pred             ceeeCCCCCeEEEccC----------CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEE-EeeCCCe
Q 024451            2 TCAFSPTGQSVACGGL----------DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI-TSSGDQT   70 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~----------d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~d~~   70 (267)
                      .+.|+|+|+.|+.-..          -+...+|.+.....     +.........++|.+++|+|++..+++ .|..++.
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-----~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~   84 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-----PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK   84 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-----ccceeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence            4679999987766433          23456666644321     122222234467999999998876543 3556789


Q ss_pred             EEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC---CCeEEEEeCCCcccceEEeeccccceeEEEEe
Q 024451           71 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---DSTARLWDTRVASRAVRTFHGHEGDVNTVKFF  147 (267)
Q Consensus        71 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~  147 (267)
                      |.+||++ ...+..+       +...++.+.|+|. +++++.++.   .|.+.+||++. .+.+.... | ..+..++|+
T Consensus        85 v~lyd~~-~~~i~~~-------~~~~~n~i~wsP~-G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~~-~-~~~t~~~Ws  152 (194)
T PF08662_consen   85 VTLYDVK-GKKIFSF-------GTQPRNTISWSPD-GRFLVLAGFGNLNGDLEFWDVRK-KKKISTFE-H-SDATDVEWS  152 (194)
T ss_pred             cEEEcCc-ccEeEee-------cCCCceEEEECCC-CCEEEEEEccCCCcEEEEEECCC-CEEeeccc-c-CcEEEEEEc
Confidence            9999997 3444433       2345678999975 566676653   46799999973 33344332 3 347899999


Q ss_pred             cCCCEEEEeeC------CCcEEEEeCCCCeee
Q 024451          148 PDGNRFGTGSD------DGTCRLFDIRTGHQL  173 (267)
Q Consensus       148 ~~~~~l~~~~~------d~~i~iwd~~~~~~~  173 (267)
                      |+|++|+++..      |..++||+.. |+.+
T Consensus       153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l  183 (194)
T PF08662_consen  153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLL  183 (194)
T ss_pred             CCCCEEEEEEeccceeccccEEEEEec-CeEe
Confidence            99999998864      7889999985 5543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.55  E-value=8.3e-13  Score=102.30  Aligned_cols=253  Identities=21%  Similarity=0.362  Sum_probs=160.3

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe------------eeEEEEEEecCC-CeeEEEeeCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK------------GYVSCCQYVPDE-DTHLITSSGD   68 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~-~~~l~s~~~d   68 (267)
                      ++.|...|.+|+||..+|.|.++..+....  ++......++.|.            -.|..++|.+++ ...++..+.|
T Consensus        30 ~vef~~~Ge~LatGdkgGRVv~f~r~~~~~--~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd  107 (433)
T KOG1354|consen   30 AVEFDHYGERLATGDKGGRVVLFEREKLYK--GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND  107 (433)
T ss_pred             eEEeecccceEeecCCCCeEEEeecccccc--cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence            467899999999999999999997654221  1222222333332            246667887654 3456677889


Q ss_pred             CeEEEEeCCCCeeEE--------------------EeC-----------CccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451           69 QTCVLWDITTGLRTS--------------------VFG-----------GEFQSGHTADVLSVSISGSNSRMFVSGSCDS  117 (267)
Q Consensus        69 ~~v~iwd~~~~~~~~--------------------~~~-----------~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~  117 (267)
                      ++|++|.+.......                    .+.           ..+.++|.--|+++.++. +...+++ ..|-
T Consensus       108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS-ADdL  185 (433)
T KOG1354|consen  108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS-ADDL  185 (433)
T ss_pred             cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee-ccce
Confidence            999999875321110                    000           012357888899999984 4445554 5577


Q ss_pred             eEEEEeCCCcccceE--Eeeccc-----cceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeE---EEEee-cCCC--
Q 024451          118 TARLWDTRVASRAVR--TFHGHE-----GDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQ---VYYQQ-HGEN--  183 (267)
Q Consensus       118 ~i~iwd~~~~~~~~~--~~~~~~-----~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~-~~~~--  183 (267)
                      .|.+|.+........  .++.++     .-|++..|+|. .+.|+-.+..|+|++-|++....-.   .++.+ ....  
T Consensus       186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r  265 (433)
T KOG1354|consen  186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR  265 (433)
T ss_pred             eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence            899998865433322  223332     24789999994 6888888899999999998432111   11111 1110  


Q ss_pred             -----CCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc-cceeeecccccC---------Cccc---eEEEEEECCCCCe
Q 024451          184 -----EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQN---------SHEG---RITCLGLSADGSA  245 (267)
Q Consensus       184 -----~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~---------~~~~---~v~~~~~~p~~~~  245 (267)
                           -...|+.+.|+++|+++++-.. -.|++||+.. .+++... ..+.         .-.+   .-..++|+-++.+
T Consensus       266 sffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~-~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~  343 (433)
T KOG1354|consen  266 SFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY-PVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY  343 (433)
T ss_pred             hhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE-eehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence                 1124788999999999997643 5799999833 2222111 0000         0111   2356889999999


Q ss_pred             EEEeECCCcEEEEec
Q 024451          246 LCTGSWDTNLKIWAF  260 (267)
Q Consensus       246 l~sgs~dg~i~~w~~  260 (267)
                      +++||.....++|+.
T Consensus       344 v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  344 VMTGSYNNVFRVFNL  358 (433)
T ss_pred             EecccccceEEEecC
Confidence            999999999999984

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=5.2e-12  Score=106.94  Aligned_cols=215  Identities=17%  Similarity=0.134  Sum_probs=135.5

Q ss_pred             CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC---CCeEEEEeCCCCeeEEEeCCccccCCcc
Q 024451           19 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---DQTCVLWDITTGLRTSVFGGEFQSGHTA   95 (267)
Q Consensus        19 ~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~   95 (267)
                      ..|.+||.....        .+.+..|...+.+.+|+|++. .|+..+.   +..|.+||+.++.......      ...
T Consensus       184 ~~l~i~D~~g~~--------~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~~------~~g  248 (433)
T PRK04922        184 YALQVADSDGYN--------PQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVAS------FRG  248 (433)
T ss_pred             EEEEEECCCCCC--------ceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEecc------CCC
Confidence            468888875321        223445677888999999875 5665553   3469999998876543321      122


Q ss_pred             ceEEEEEeCCCCeEEEEecCCC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-CCc--EEEEeCCCC
Q 024451           96 DVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGT--CRLFDIRTG  170 (267)
Q Consensus        96 ~i~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--i~iwd~~~~  170 (267)
                      ......|+|.+.+++++.+.++  .|.+||+...  ....+..+........|+|+|+.++..+. ++.  |.++|+.++
T Consensus       249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g--~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g  326 (433)
T PRK04922        249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR--QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG  326 (433)
T ss_pred             CccCceECCCCCEEEEEEeCCCCceEEEEECCCC--CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            2346778876666656666555  5889998643  34455555555567899999998887763 444  555666665


Q ss_pred             eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC---eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEE
Q 024451          171 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC  247 (267)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  247 (267)
                      +...... . .    ......+|+|+|++|+..+.++   .|++||+..++.. .+.     +........|+|||++++
T Consensus       327 ~~~~lt~-~-g----~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-----~~~~~~~p~~spdG~~i~  394 (433)
T PRK04922        327 SAERLTF-Q-G----NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-----PGSLDESPSFAPNGSMVL  394 (433)
T ss_pred             CeEEeec-C-C----CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-----CCCCCCCceECCCCCEEE
Confidence            4322211 1 1    1234678999999998765433   6899998765543 221     122334578999999988


Q ss_pred             EeECC-C--cEEEEecCc
Q 024451          248 TGSWD-T--NLKIWAFGG  262 (267)
Q Consensus       248 sgs~d-g--~i~~w~~~~  262 (267)
                      ..+.+ +  .+.+++..|
T Consensus       395 ~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        395 YATREGGRGVLAAVSTDG  412 (433)
T ss_pred             EEEecCCceEEEEEECCC
Confidence            76653 2  466666654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.54  E-value=2e-14  Score=115.03  Aligned_cols=195  Identities=16%  Similarity=0.275  Sum_probs=152.1

Q ss_pred             EEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc
Q 024451           50 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR  129 (267)
Q Consensus        50 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~  129 (267)
                      +.+.+..+ +++++.|+..|.|-..|..+......+.      -...|..+.|... .+ +++......+.|||-. +. 
T Consensus       133 Y~~~ytrn-GrhlllgGrKGHlAa~Dw~t~~L~~Ei~------v~Etv~Dv~~LHn-eq-~~AVAQK~y~yvYD~~-Gt-  201 (545)
T KOG1272|consen  133 YHLDYTRN-GRHLLLGGRKGHLAAFDWVTKKLHFEIN------VMETVRDVTFLHN-EQ-FFAVAQKKYVYVYDNN-GT-  201 (545)
T ss_pred             eeeeecCC-ccEEEecCCccceeeeecccceeeeeee------hhhhhhhhhhhcc-hH-HHHhhhhceEEEecCC-Cc-
Confidence            45677665 4789999999999999999887665543      2456777777753 33 4456677789999964 33 


Q ss_pred             ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeE
Q 024451          130 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC  209 (267)
Q Consensus       130 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i  209 (267)
                      .+.-++.| ..|..+.|-|.-=+|++++..|.++--|+.+|+.+..+...     .+.+..++-.|-+-.+-.|..+|.|
T Consensus       202 ElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-----~G~~~vm~qNP~NaVih~GhsnGtV  275 (545)
T KOG1272|consen  202 ELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-----AGRTDVMKQNPYNAVIHLGHSNGTV  275 (545)
T ss_pred             EEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-----CCccchhhcCCccceEEEcCCCceE
Confidence            33444433 56899999999888999999999999999999876544322     2346667778888899999999999


Q ss_pred             EEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceEe
Q 024451          210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR  265 (267)
Q Consensus       210 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~  265 (267)
                      .+|.....+.+..+    -.|.++|.++++.|+|+|+|+.+.|..++|||+.++.-
T Consensus       276 SlWSP~skePLvKi----LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q  327 (545)
T KOG1272|consen  276 SLWSPNSKEPLVKI----LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ  327 (545)
T ss_pred             EecCCCCcchHHHH----HhcCCCcceEEECCCCcEEeecccccceeEeeeccccc
Confidence            99998877776655    36999999999999999999999999999999877653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=3e-12  Score=108.12  Aligned_cols=214  Identities=15%  Similarity=0.203  Sum_probs=126.6

Q ss_pred             ceeeCCCCCeEEEccCC---CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC--
Q 024451            2 TCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~--   76 (267)
                      +.+|+|||+.|+..+.+   ..|.+||+....       . ..+....+.+.+..|+|++..++++.+.++...||.+  
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-------~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  271 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-------R-RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA  271 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCC-------E-EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence            46799999999887643   458899986421       1 1122233445678999988765567788888777754  


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEe
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG  156 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  156 (267)
                      .++.... +     ..+........|++.+..++.+...++...+|.+.........+..+........|+|+|++++..
T Consensus       272 ~~~~~~~-l-----t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~  345 (427)
T PRK02889        272 DGSGLRR-L-----TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYI  345 (427)
T ss_pred             CCCCcEE-C-----CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEE
Confidence            4333221 1     112233445678876555544544556677775532222222222222334567899999999877


Q ss_pred             eCCC---cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC---eEEEEeCCccceeeecccccCCc
Q 024451          157 SDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSH  230 (267)
Q Consensus       157 ~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~  230 (267)
                      +.++   .|.+||+.+++... +.. .     .......|+|+++.|+..+.++   .+++.+.. ++....+    ..+
T Consensus       346 s~~~g~~~I~v~d~~~g~~~~-lt~-~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l----~~~  413 (427)
T PRK02889        346 SRVGGAFKLYVQDLATGQVTA-LTD-T-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRL----SVQ  413 (427)
T ss_pred             EccCCcEEEEEEECCCCCeEE-ccC-C-----CCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEe----ecC
Confidence            6554   69999998775432 211 1     1234668999999988877543   45555652 2222211    234


Q ss_pred             cceEEEEEECC
Q 024451          231 EGRITCLGLSA  241 (267)
Q Consensus       231 ~~~v~~~~~~p  241 (267)
                      .+.+...+|+|
T Consensus       414 ~g~~~~p~wsp  424 (427)
T PRK02889        414 GGDVREPSWGP  424 (427)
T ss_pred             CCCCCCCccCC
Confidence            45566677776

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=9.1e-13  Score=106.26  Aligned_cols=218  Identities=22%  Similarity=0.365  Sum_probs=153.0

Q ss_pred             ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCC
Q 024451           38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCD  116 (267)
Q Consensus        38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d  116 (267)
                      +...+.+|.+.|..|.|+..++ .|+++|.|..|.+||..++.....+    ..+|...+..-.|.|. +.+-+++++.|
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f----~SGH~~NvfQaKFiP~s~d~ti~~~s~d  208 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSF----ESGHCNNVFQAKFIPFSGDRTIVTSSRD  208 (559)
T ss_pred             hhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccccc----ccccccchhhhhccCCCCCcCceecccc
Confidence            4567889999999999998764 7999999999999999887665544    3688888888778764 45678899999


Q ss_pred             CeEEEEeCCCcccc--eEEeeccccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEEEEe---------------
Q 024451          117 STARLWDTRVASRA--VRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQ---------------  178 (267)
Q Consensus       117 ~~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------------  178 (267)
                      |.+++=.+....+.  ...+..|.+.|+-++.-|. .+.|.+++.|+.+.-+|++.......+..               
T Consensus       209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA  288 (559)
T ss_pred             CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence            99998776543332  2334568888888888775 45678888888888888775422111100               


Q ss_pred             ----------------------------------------ecCC-CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451          179 ----------------------------------------QHGE-NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  217 (267)
Q Consensus       179 ----------------------------------------~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  217 (267)
                                                              .+.. ...-.|++++|+.++.-++++++|-.|++|....+
T Consensus       289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~  368 (559)
T KOG1334|consen  289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG  368 (559)
T ss_pred             cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence                                                    0000 01124788999988888888899999999953222


Q ss_pred             ce--e-------eecccccCCcc--ceEEEEEE-CCCCCeEEEeECCCcEEEEec
Q 024451          218 KV--V-------LNLGSLQNSHE--GRITCLGL-SADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       218 ~~--~-------~~~~~~~~~~~--~~v~~~~~-~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ..  +       .......++|.  ..|..+-| -|..+|+++||.-|.|.||+-
T Consensus       369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K  423 (559)
T KOG1334|consen  369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK  423 (559)
T ss_pred             cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence            11  0       00111123453  35777776 488999999999999999984

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=1e-12  Score=97.33  Aligned_cols=157  Identities=13%  Similarity=0.215  Sum_probs=114.3

Q ss_pred             eEEEEEeCCCCeEEEEecCCCeEEEEeCCC---------cccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeC
Q 024451           97 VLSVSISGSNSRMFVSGSCDSTARLWDTRV---------ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  167 (267)
Q Consensus        97 i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  167 (267)
                      |.+-+++| ..++++.|..+|.|-++.++.         +..++...++|.++|+.++|+.  .++++|+ ||.|+=|..
T Consensus        13 vf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   13 VFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence            33344565 467899999999999998752         1234455689999999999983  4677766 599998876


Q ss_pred             CCCeee---EEE-----EeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          168 RTGHQL---QVY-----YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       168 ~~~~~~---~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      +...+.   +.+     ..+....+.+.|.++...|..+.++.+..|+.++-||++.++....+    ++|.+.|.++.-
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~----rGHtDYvH~vv~  164 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY----RGHTDYVHSVVG  164 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE----cCCcceeeeeee
Confidence            542210   000     11112335567899999988777766669999999999998876655    689999999988


Q ss_pred             CCCCCeEEEeECCCcEEEEecC
Q 024451          240 SADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      -.....+.+|+.||++|+||.-
T Consensus       165 R~~~~qilsG~EDGtvRvWd~k  186 (325)
T KOG0649|consen  165 RNANGQILSGAEDGTVRVWDTK  186 (325)
T ss_pred             cccCcceeecCCCccEEEEecc
Confidence            4445567889999999999863

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.50  E-value=7.3e-13  Score=108.01  Aligned_cols=178  Identities=18%  Similarity=0.266  Sum_probs=115.1

Q ss_pred             EEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccce
Q 024451           62 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV  141 (267)
Q Consensus        62 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i  141 (267)
                      ++.|=.-|.|.+.|.....-...+.... .-.+..++++.|.+.+..+|+.+-.+|.+.++|.....         ...-
T Consensus       188 llIGf~tGqvq~idp~~~~~sklfne~r-~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~---------~~t~  257 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFEVSKLFNEER-LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC---------GATA  257 (636)
T ss_pred             eEEeeccCceEEecchhhHHHHhhhhcc-cccccceEEEEEEeCCCceEEEEEecCceEEeeccccc---------cCCC
Confidence            4556666777777765422111121111 12346799999999888899999999999999863110         0111


Q ss_pred             eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee
Q 024451          142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL  221 (267)
Q Consensus       142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~  221 (267)
                      .+....+++..|+....-..      .+...+..+...     ...|...+|+|||++||+.+.||.++|||..+.+.+-
T Consensus       258 p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~-----~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg  326 (636)
T KOG2394|consen  258 PSYQALKDGDQFAILTSKSK------KTRNPVARWHIG-----EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG  326 (636)
T ss_pred             CcccccCCCCeeEEeeeecc------ccCCccceeEec-----cccccceeEcCCCceEEEEecCceEEEeeccHHHHHH
Confidence            12223345555543221100      010112121111     1257899999999999999999999999987776554


Q ss_pred             ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      .+    +...+.+.|++|||||+|+++|++|..|.||.|...+
T Consensus       327 ~m----kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR  365 (636)
T KOG2394|consen  327 VM----KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR  365 (636)
T ss_pred             HH----HhhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence            33    3455679999999999999999999999999976544

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.50  E-value=3.1e-14  Score=121.35  Aligned_cols=164  Identities=27%  Similarity=0.467  Sum_probs=126.6

Q ss_pred             ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451           38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  117 (267)
Q Consensus        38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~  117 (267)
                      ..+.+.||.+.|+|+.|...+ .++++|+.|..++||..+++.+....     .||+..|..++++. +.-++++++.|.
T Consensus       182 ~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~-----rGhs~ditdlavs~-~n~~iaaaS~D~  254 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASC-----RGHSGDITDLAVSS-NNTMIAAASNDK  254 (1113)
T ss_pred             HHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccC-----CCCccccchhccch-hhhhhhhcccCc
Confidence            456678999999999998865 68999999999999999887665443     58999999998874 455788999999


Q ss_pred             eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC
Q 024451          118 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  197 (267)
Q Consensus       118 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  197 (267)
                      .|++|-+.. ..++..+.+|++.|++++|+|-.    +.+.||++++||-+-. ............+..-+.++-|-.++
T Consensus       255 vIrvWrl~~-~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~~~  328 (1113)
T KOG0644|consen  255 VIRVWRLPD-GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFENNG  328 (1113)
T ss_pred             eEEEEecCC-CchHHHHhccccceeeeccCccc----cCCCCCceEecccccc-ccccCCCCCCcccccceeeeeccccc
Confidence            999999874 45788899999999999999954    6789999999998711 11100011111222345667777788


Q ss_pred             CEEEEEEeCCeEEEEeC
Q 024451          198 RLLFAGYSNGDCYVWDT  214 (267)
Q Consensus       198 ~~l~~g~~dg~i~i~d~  214 (267)
                      .-+++|+.|+.-..|..
T Consensus       329 ~~f~Tgs~d~ea~n~e~  345 (1113)
T KOG0644|consen  329 DRFLTGSRDGEARNHEF  345 (1113)
T ss_pred             cccccccCCcccccchh
Confidence            88999999988877764

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.49  E-value=2.9e-12  Score=111.73  Aligned_cols=186  Identities=18%  Similarity=0.257  Sum_probs=138.3

Q ss_pred             eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceE----EEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee
Q 024451           60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL----SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH  135 (267)
Q Consensus        60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~  135 (267)
                      ..++.+..++.+-+||...+......      .+.....    .+.....+.-++++|+.-+.|.+|+.....++. .+.
T Consensus       100 k~i~l~~~~ns~~i~d~~~~~~~~~i------~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~  172 (967)
T KOG0974|consen  100 KKIALVTSRNSLLIRDSKNSSVLSKI------QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLK  172 (967)
T ss_pred             ceEEEEEcCceEEEEecccCceehhc------CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-eec
Confidence            46788888999999998755322211      1222221    122233445567888889999999987544444 577


Q ss_pred             ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451          136 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  215 (267)
Q Consensus       136 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~  215 (267)
                      +|.+.|..+.++.+|.++++.|+|+++|+|++++.+...    ...-++...+..++|.|+  .+++++.|-..++|+..
T Consensus       173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~----~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG----CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC----cccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence            999999999999999999999999999999999877654    123345567999999998  99999999999999643


Q ss_pred             ccceeeecccccCCc-cceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          216 LAKVVLNLGSLQNSH-EGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       216 ~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      - +.+..+    ..| .+.|..++..++....++++.|+.+++|++.++
T Consensus       247 ~-~~l~~y----~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  247 G-TQLEVY----DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             c-ceehhh----hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            2 222211    234 356899999999999999999999999997665

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.1e-11  Score=105.01  Aligned_cols=211  Identities=15%  Similarity=0.150  Sum_probs=129.6

Q ss_pred             ceeeCCCCCeEEEccC---CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe--EEEEeC
Q 024451            2 TCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT--CVLWDI   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~--v~iwd~   76 (267)
                      ..+|+|||+.|+..+.   +..|.+||+....        .+.+..+.+.+.+.+|+|++..++++.+.++.  |.+||+
T Consensus       206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  277 (435)
T PRK05137        206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--------RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL  277 (435)
T ss_pred             eeEECCCCCEEEEEEecCCCCEEEEEECCCCc--------EEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence            4679999999988764   4689999986421        12234455667788999988766667777765  667788


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  154 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  154 (267)
                      .++......      .+........|+|....++.+...++  .|.++|+.. . ..+.+..+...+....|+|+|+.++
T Consensus       278 ~~~~~~~Lt------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-~-~~~~lt~~~~~~~~~~~SpdG~~ia  349 (435)
T PRK05137        278 RSGTTTRLT------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-S-NPRRISFGGGRYSTPVWSPRGDLIA  349 (435)
T ss_pred             CCCceEEcc------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-C-CeEEeecCCCcccCeEECCCCCEEE
Confidence            776543322      12333455778875544444443444  577777653 2 2333433345566789999999998


Q ss_pred             EeeCC---CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC------CeEEEEeCCccceeeeccc
Q 024451          155 TGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN------GDCYVWDTLLAKVVLNLGS  225 (267)
Q Consensus       155 ~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~  225 (267)
                      ....+   ..|.+||+..+.. ..+..  .    ..+....|+|+|+.|+....+      ..|+++|+..... ..+. 
T Consensus       350 ~~~~~~~~~~i~~~d~~~~~~-~~lt~--~----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-  420 (435)
T PRK05137        350 FTKQGGGQFSIGVMKPDGSGE-RILTS--G----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-  420 (435)
T ss_pred             EEEcCCCceEEEEEECCCCce-EeccC--C----CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-
Confidence            76543   3688888765432 22211  1    124667899999988765542      2578888754332 1211 


Q ss_pred             ccCCccceEEEEEECC
Q 024451          226 LQNSHEGRITCLGLSA  241 (267)
Q Consensus       226 ~~~~~~~~v~~~~~~p  241 (267)
                          ..+.+...+|+|
T Consensus       421 ----~~~~~~~p~Wsp  432 (435)
T PRK05137        421 ----TPGDASDPAWSP  432 (435)
T ss_pred             ----CCCCccCcccCC
Confidence                122355567766

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.48  E-value=6.5e-11  Score=100.03  Aligned_cols=201  Identities=18%  Similarity=0.144  Sum_probs=126.1

Q ss_pred             cccCCeeeEEEEEEecCCCeeEEEeeCC---CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451           41 MLSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  117 (267)
Q Consensus        41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~  117 (267)
                      .+..+...+.+..|+|++. +|+..+.+   ..|++||+.++......      .+.....+..|++.+..++++.+.++
T Consensus       184 ~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~------~~~~~~~~~~~spDg~~l~~~~~~~~  256 (417)
T TIGR02800       184 TITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVA------SFPGMNGAPAFSPDGSKLAVSLSKDG  256 (417)
T ss_pred             EeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEee------cCCCCccceEECCCCCEEEEEECCCC
Confidence            3445666788899999875 55554433   47999999887543322      12334456778876555655655554


Q ss_pred             --eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-CC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEE
Q 024451          118 --TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA  192 (267)
Q Consensus       118 --~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  192 (267)
                        .|.+|++...  ....+..+........|+|+++.++..+. ++  .|.++|+.+++.... .. .    ........
T Consensus       257 ~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l-~~-~----~~~~~~~~  328 (417)
T TIGR02800       257 NPDIYVMDLDGK--QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL-TF-R----GGYNASPS  328 (417)
T ss_pred             CccEEEEECCCC--CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ec-C----CCCccCeE
Confidence              5888887632  33444444444557789999998876654 33  577778776543222 11 1    12356778


Q ss_pred             EccCCCEEEEEEeCC---eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC---cEEEEecCc
Q 024451          193 FSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT---NLKIWAFGG  262 (267)
Q Consensus       193 ~s~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg---~i~~w~~~~  262 (267)
                      |+|++++++.+..++   .|++||+...... .+.    .. .......|+|+|++|+..+.++   .+.+.+..+
T Consensus       329 ~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~----~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       329 WSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLT----DT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             ECCCCCEEEEEEccCCceEEEEEeCCCCCeE-Ecc----CC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence            999999999887765   7889997664322 111    11 1234568999999988777754   344545444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.45  E-value=8.8e-10  Score=90.58  Aligned_cols=253  Identities=16%  Similarity=0.182  Sum_probs=148.4

Q ss_pred             eeeCCCCCeEEEccC----CCeEEEeecCCCCCCCCCCccccccc-CCeeeEEEEEEecCCCeeEEEe-eCCCeEEEEeC
Q 024451            3 CAFSPTGQSVACGGL----DSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDI   76 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~-~~d~~v~iwd~   76 (267)
                      ++++|++++|.++.+    ++.|..|++....   +.+....... .-..++ .+.+.|++. +|+++ -.+++|.++++
T Consensus        42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~---g~L~~~~~~~~~g~~p~-~i~~~~~g~-~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT---GTLTLLNSVPSGGSSPC-HIAVDPDGR-FLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             EEE-TTSSEEEEEETTSSTTTEEEEEEEETTT---TEEEEEEEEEESSSCEE-EEEECTTSS-EEEEEETTTTEEEEEEE
T ss_pred             EEEEeCCCEEEEEEccccCCCCEEEEEECCCc---ceeEEeeeeccCCCCcE-EEEEecCCC-EEEEEEccCCeEEEEEc
Confidence            578999999888876    5799999886531   2222222222 222333 477888765 55555 46899999999


Q ss_pred             CCC-eeEEE---eCC--c---cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce---EEee-ccccceeE
Q 024451           77 TTG-LRTSV---FGG--E---FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV---RTFH-GHEGDVNT  143 (267)
Q Consensus        77 ~~~-~~~~~---~~~--~---~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~---~~~~-~~~~~i~~  143 (267)
                      ... .....   +..  .   ..........++.++|....++++.-....|.+|++......+   ..+. .....-..
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            863 22111   100  0   0011234567888987666566555555589999886443212   1222 23345678


Q ss_pred             EEEecCCCEEEEee-CCCcEEEEeCC--CCeeeEEEEeec---CCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCc
Q 024451          144 VKFFPDGNRFGTGS-DDGTCRLFDIR--TGHQLQVYYQQH---GENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLL  216 (267)
Q Consensus       144 ~~~~~~~~~l~~~~-~d~~i~iwd~~--~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~  216 (267)
                      +.|+|+++++.... .+++|.++++.  ++..........   ..........+.++|+|++|.++.. ...|.+|++..
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~  276 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP  276 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence            99999999886655 57889999988  332211111111   1111125789999999999988764 57899999732


Q ss_pred             c-ceeeecccccCCccceEEEEEECCCCCeEEEeE-CCCcEEEEecC
Q 024451          217 A-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAFG  261 (267)
Q Consensus       217 ~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~  261 (267)
                      . ..+........ ....-..++++|+|++|+++. .++.|.+|+++
T Consensus       277 ~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  277 ATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             TTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            1 12222222211 222357899999999998776 46789999763

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.44  E-value=1.1e-12  Score=119.82  Aligned_cols=193  Identities=18%  Similarity=0.284  Sum_probs=145.4

Q ss_pred             CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEe
Q 024451           44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD  123 (267)
Q Consensus        44 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd  123 (267)
                      -|-..|.++.-+|.. .+.+||+.||.+++|....+..+..+..   .+ ..++....++.. +..+..+..||.+.+|+
T Consensus      2206 ~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt---~g-~s~vtr~~f~~q-Gnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRT---AG-NSRVTRSRFNHQ-GNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             cccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeec---cC-cchhhhhhhccc-CCceeeeccCCceeecc
Confidence            344556777777864 5788999999999999988877766542   12 266777777754 44567888999999999


Q ss_pred             CCCcccceEEeeccccceeEEEEecCCCEEEEee---CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE
Q 024451          124 TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL  200 (267)
Q Consensus       124 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  200 (267)
                      ..  .++....+.|+...+.+.|-.  ..+++++   .++.+.+||..-......+.    ..+...++++++.|..+.+
T Consensus      2280 ~~--pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~----~~H~~gaT~l~~~P~~qll 2351 (2439)
T KOG1064|consen 2280 AS--PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH----TCHDGGATVLAYAPKHQLL 2351 (2439)
T ss_pred             cC--CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee----eecCCCceEEEEcCcceEE
Confidence            75  456777888999999999875  5666664   57899999975443333322    2344568999999999999


Q ss_pred             EEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          201 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       201 ~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      ++|+.+|.|++||++..+....+.         .    +. ...++++|+..|.++||++.++.
T Consensus      2352 isggr~G~v~l~D~rqrql~h~~~---------~----~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQLRHTFQ---------A----LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             EecCCcCcEEEeehHHHHHHHHhh---------h----hh-hhheeeccCcccceEEEEccccc
Confidence            999999999999998776554321         1    33 56789999999999999988764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=3.3e-11  Score=99.34  Aligned_cols=236  Identities=19%  Similarity=0.262  Sum_probs=145.4

Q ss_pred             ceeeCCCCCeE-EEccCCCeEEEeecCCCCCCCCCCcccccccCCee-eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            2 TCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG-YVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         2 ~~~~~~~g~~l-~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      .+..+|||+++ +||-.--.|++||+..         +...+..|.. .+..+-+..++-..++--..|.+|.+-..- |
T Consensus        56 ~ik~s~DGqY~lAtG~YKP~ikvydlan---------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G  125 (703)
T KOG2321|consen   56 RIKVSPDGQYLLATGTYKPQIKVYDLAN---------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-G  125 (703)
T ss_pred             eeEecCCCcEEEEecccCCceEEEEccc---------ceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-C
Confidence            35679999875 5566788999999864         2222333332 222222222222223333455555433211 1


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  159 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  159 (267)
                      ....+   .    -...-..++++.++-.+++ ++....|.=+++.++ ..+..+....+.++++..++...++++|+.|
T Consensus       126 ~hy~~---R----IP~~GRDm~y~~~scDly~-~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~  196 (703)
T KOG2321|consen  126 RHYRT---R----IPKFGRDMKYHKPSCDLYL-VGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLACGTED  196 (703)
T ss_pred             eeeee---e----cCcCCccccccCCCccEEE-eecCcceEEEEcccc-ccccccccccccceeeeecCccceEEecccC
Confidence            00000   0    0011234445544444444 444446777777754 3566666666889999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEEEEe-ec-----CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccce
Q 024451          160 GTCRLFDIRTGHQLQVYYQ-QH-----GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR  233 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~-~~-----~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  233 (267)
                      |.|..||.++.+....+.. .+     .....+.|+++.|+.+|-.+++|+++|.++|||++..+++..-.   ....-+
T Consensus       197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd---h~~e~p  273 (703)
T KOG2321|consen  197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD---HGYELP  273 (703)
T ss_pred             ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc---cCCccc
Confidence            9999999987654433211 11     12233458999999999999999999999999998877654321   123458


Q ss_pred             EEEEEECCC--CCeEEEeECCCcEEEEec
Q 024451          234 ITCLGLSAD--GSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       234 v~~~~~~p~--~~~l~sgs~dg~i~~w~~  260 (267)
                      |..+.|.+.  ++.++|.. ...++||+-
T Consensus       274 i~~l~~~~~~~q~~v~S~D-k~~~kiWd~  301 (703)
T KOG2321|consen  274 IKKLDWQDTDQQNKVVSMD-KRILKIWDE  301 (703)
T ss_pred             eeeecccccCCCceEEecc-hHHhhhccc
Confidence            999999876  45666653 456899973

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.42  E-value=6.4e-11  Score=97.78  Aligned_cols=190  Identities=15%  Similarity=0.231  Sum_probs=138.1

Q ss_pred             CCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEe-------------------CCCCeEEEEecCCCe
Q 024451           58 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS-------------------GSNSRMFVSGSCDST  118 (267)
Q Consensus        58 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------------~~~~~~~~s~~~d~~  118 (267)
                      ...++|....||.+|+||..+......|...  ..-++...+..|.                   ..+..+++-|...|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~--~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPI--ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccc--hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            3468999999999999999877654444211  1112222222221                   012345677888899


Q ss_pred             EEEEeCCCcccceEEe--eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC
Q 024451          119 ARLWDTRVASRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS  196 (267)
Q Consensus       119 i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  196 (267)
                      |.++++.... ....+  ..|-+.|+++.++.+-..|.+++.|..+..|+....+....+..     ....+.+++.+|+
T Consensus        82 v~~ys~~~g~-it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-----~~~~~~sl~is~D  155 (541)
T KOG4547|consen   82 VLLYSVAGGE-ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE-----QKPLVSSLCISPD  155 (541)
T ss_pred             EEEEEecCCe-EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc-----CCCccceEEEcCC
Confidence            9999986433 33333  46888999999998889999999999999999987665444322     2235899999999


Q ss_pred             CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC-----CCeEE-EeECCCcEEEEecC
Q 024451          197 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-----GSALC-TGSWDTNLKIWAFG  261 (267)
Q Consensus       197 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~l~-sgs~dg~i~~w~~~  261 (267)
                      +..+++++  ++|.+||.++.+.+..+    .+|.++|.++.|.-+     |++++ +...+..+.+|-..
T Consensus       156 ~~~l~~as--~~ik~~~~~~kevv~~f----tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  156 GKILLTAS--RQIKVLDIETKEVVITF----TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             CCEEEecc--ceEEEEEccCceEEEEe----cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            99999886  88999999999888776    689999999999876     66655 45557778888653

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.39  E-value=8.6e-11  Score=99.28  Aligned_cols=190  Identities=18%  Similarity=0.222  Sum_probs=118.6

Q ss_pred             ceeeCCCCCeEEEccCC---CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC--eEEEEeC
Q 024451            2 TCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDI   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~   76 (267)
                      ..+|+|+|+.|+.+..+   ..|.+||+....        ...+..+.+.+.++.|+|++..++++.+.++  .|.+||+
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--------~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~  265 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--------REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL  265 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--------EEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence            45799999999987654   479999986421        1122334455667899998766656666554  5888898


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  154 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  154 (267)
                      .++......      .+........|++.+..++.+...++  .|.++++...  ....+..+........|+|++++++
T Consensus       266 ~~~~~~~l~------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~--~~~~l~~~~~~~~~~~~spdg~~i~  337 (417)
T TIGR02800       266 DGKQLTRLT------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG--EVRRLTFRGGYNASPSWSPDGDLIA  337 (417)
T ss_pred             CCCCEEECC------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC--CEEEeecCCCCccCeEECCCCCEEE
Confidence            876543322      12222334567765444444444444  4667776532  2333443455667889999999999


Q ss_pred             EeeCCC---cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC---eEEEEeC
Q 024451          155 TGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDT  214 (267)
Q Consensus       155 ~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg---~i~i~d~  214 (267)
                      ....++   .|.+||+.++.. ..+.. ..     ......|+|+++.|+..+.++   .+++.+.
T Consensus       338 ~~~~~~~~~~i~~~d~~~~~~-~~l~~-~~-----~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       338 FVHREGGGFNIAVMDLDGGGE-RVLTD-TG-----LDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             EEEccCCceEEEEEeCCCCCe-EEccC-CC-----CCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            888776   788999877543 22211 11     123457999999988877654   4555553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.39  E-value=3.7e-10  Score=87.47  Aligned_cols=240  Identities=16%  Similarity=0.202  Sum_probs=151.6

Q ss_pred             eeeCCCCCeEEE-ccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSPTGQSVAC-GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~~g~~l~~-~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +.|..|.-++++ +..|+.|.+|++..++       -...+......+.++.|+|++...|.+...|-.|.+|.+.++..
T Consensus        54 ieW~ads~~ilC~~yk~~~vqvwsl~Qpe-------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~  126 (447)
T KOG4497|consen   54 IEWKADSCHILCVAYKDPKVQVWSLVQPE-------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG  126 (447)
T ss_pred             eeeeccceeeeeeeeccceEEEEEeecce-------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence            346666655555 4568899999997653       34455556677889999999877788888999999999988653


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEe-----------------------------------cC-CCeEEEEeCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-----------------------------------SC-DSTARLWDTR  125 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~-----------------------------------~~-d~~i~iwd~~  125 (267)
                      ... +     .-+..+.-++++++ +++.+..                                   +- +..+.+||.-
T Consensus       127 ~~~-~-----~pK~~~kg~~f~~d-g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~  199 (447)
T KOG4497|consen  127 YLL-P-----HPKTNVKGYAFHPD-GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV  199 (447)
T ss_pred             EEe-c-----ccccCceeEEECCC-CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch
Confidence            322 1     01111233444432 2222111                                   11 2345667643


Q ss_pred             CcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEE-----------------------------
Q 024451          126 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY-----------------------------  176 (267)
Q Consensus       126 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----------------------------  176 (267)
                      - ...+..+. -.-.+..++|+|.+++++.|+.|+.+|+-+--+-+....+                             
T Consensus       200 L-eykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL  277 (447)
T KOG4497|consen  200 L-EYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL  277 (447)
T ss_pred             h-hheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc
Confidence            2 12222221 2246889999999999999999999988552221110000                             


Q ss_pred             ----------------------------Ee----ecCCCCCCcEEEEEEccCCCEEEEEEeC--CeEEEEeCCccceeee
Q 024451          177 ----------------------------YQ----QHGENEIPHVTSIAFSISGRLLFAGYSN--GDCYVWDTLLAKVVLN  222 (267)
Q Consensus       177 ----------------------------~~----~~~~~~~~~v~~~~~s~~~~~l~~g~~d--g~i~i~d~~~~~~~~~  222 (267)
                                                  ..    ....+....+.-++|++|..++++-..+  ..+.+||++..+...-
T Consensus       278 sf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~av  357 (447)
T KOG4497|consen  278 SFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAV  357 (447)
T ss_pred             ccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhh
Confidence                                        00    0000112235678999999999987654  6899999987664432


Q ss_pred             cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          223 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       223 ~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      +     ....+|....|+|...-|+.+...-++.+|...|-
T Consensus       358 L-----iQk~piraf~WdP~~prL~vctg~srLY~W~psg~  393 (447)
T KOG4497|consen  358 L-----IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP  393 (447)
T ss_pred             h-----hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence            2     12347999999999888887777778999987763

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=4.2e-11  Score=104.67  Aligned_cols=192  Identities=21%  Similarity=0.276  Sum_probs=140.1

Q ss_pred             eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEE---EEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC---CQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~---~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +.-+...++.+..++.+.+||.....      ....+..+-....++   +.+++ ++-++++|+.-+.|.+|+......
T Consensus        95 l~~e~k~i~l~~~~ns~~i~d~~~~~------~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   95 LFEENKKIALVTSRNSLLIRDSKNSS------VLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             hhhhcceEEEEEcCceEEEEecccCc------eehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCC
Confidence            44566778888999999999976421      011111122222222   22334 346889999999999999862221


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                       ..    ...+|++.|+++.++. +++++++.+.|.++|+|++..........-+|...+..+.|+|+  .++++++|-+
T Consensus       168 -p~----~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct  239 (967)
T KOG0974|consen  168 -PI----RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT  239 (967)
T ss_pred             -cc----eecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE
Confidence             11    2368999999999985 57889999999999999998655444355689999999999988  9999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  216 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~  216 (267)
                      .++|+.. +.++..+.++.    ...+..+..+++...++++..||.+++||+..
T Consensus       240 crvW~~~-~~~l~~y~~h~----g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  240 CRVWGVN-GTQLEVYDEHS----GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEEecc-cceehhhhhhh----hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            9999764 34444443322    23589999999999999999999999999643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=3.9e-10  Score=95.75  Aligned_cols=212  Identities=15%  Similarity=0.119  Sum_probs=119.8

Q ss_pred             ceeeCCCCCeEEEccCC-C--eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe--EEEEeC
Q 024451            2 TCAFSPTGQSVACGGLD-S--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT--CVLWDI   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d-~--~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~--v~iwd~   76 (267)
                      ...|+|||+.|+..+.+ +  .|.+||+....     ......+.++   .....|+|++..++++.+.++.  |.+||+
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-----~~~lt~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-----REKVTSFPGI---NGAPRFSPDGKKLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCC-----eEEecCCCCC---cCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence            45799999998876543 2  57777765421     1112222232   3467899988766666777775  777788


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe--EEEEeCCCcccceEEeeccccceeEEEEecCCCEEE
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  154 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  154 (267)
                      +++......      .+........|++.+..++.+...++.  |.++|+....  ...+..+........|+|+|++++
T Consensus       294 ~tg~~~~lt------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~~g~~~~~~~~SpDG~~l~  365 (448)
T PRK04792        294 ATKALTRIT------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSRLTFEGEQNLGGSITPDGRSMI  365 (448)
T ss_pred             CCCCeEECc------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEEecCCCCCcCeeECCCCCEEE
Confidence            776543322      122334566788765555555555554  5555654322  222221222234578999999987


Q ss_pred             EeeC-CC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-C--eEEEEeCCccceeeecccccC
Q 024451          155 TGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-G--DCYVWDTLLAKVVLNLGSLQN  228 (267)
Q Consensus       155 ~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-g--~i~i~d~~~~~~~~~~~~~~~  228 (267)
                      ..+. ++  .|.++|+.+++.. .+... ..     .....|+|+|+.|+....+ |  .+++++.. ++....+    .
T Consensus       366 ~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~-----d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l----~  433 (448)
T PRK04792        366 MVNRTNGKFNIARQDLETGAMQ-VLTST-RL-----DESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARL----P  433 (448)
T ss_pred             EEEecCCceEEEEEECCCCCeE-EccCC-CC-----CCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEC----c
Confidence            7654 34  3555777766532 22111 11     1233699999988776543 3  47777753 3332222    2


Q ss_pred             CccceEEEEEECC
Q 024451          229 SHEGRITCLGLSA  241 (267)
Q Consensus       229 ~~~~~v~~~~~~p  241 (267)
                      .+.+.+...+|+|
T Consensus       434 ~~~g~~~~p~Wsp  446 (448)
T PRK04792        434 AGQGEVKSPAWSP  446 (448)
T ss_pred             CCCCCcCCCccCC
Confidence            2344566777776

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.9e-09  Score=91.55  Aligned_cols=201  Identities=15%  Similarity=0.155  Sum_probs=118.3

Q ss_pred             ccCCeeeEEEEEEecCCCeeEEEeeCCC--eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe-
Q 024451           42 LSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST-  118 (267)
Q Consensus        42 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~-  118 (267)
                      +..+...+.+..|+|++..++++...++  .|.+||+.++.......      .........|+|.+..++++.+.++. 
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~------~~g~~~~~~wSPDG~~La~~~~~~g~~  286 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS------FPGINGAPRFSPDGKKLALVLSKDGQP  286 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC------CCCCcCCeeECCCCCEEEEEEeCCCCe
Confidence            3445667888999998764444443343  58888998775433221      11122356788766656556666665 


Q ss_pred             -EEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-CC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEc
Q 024451          119 -ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  194 (267)
Q Consensus       119 -i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s  194 (267)
                       |.++|+...  ....+..+........|+|+++.++..+. ++  .|.++|+.+++.......  .    ......+|+
T Consensus       287 ~Iy~~dl~tg--~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~--g----~~~~~~~~S  358 (448)
T PRK04792        287 EIYVVDIATK--ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE--G----EQNLGGSIT  358 (448)
T ss_pred             EEEEEECCCC--CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC--C----CCCcCeeEC
Confidence             666777532  34444445555678899999998876553 34  466667766654332211  1    112346899


Q ss_pred             cCCCEEEEEEe-CC--eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC-CCc--EEEEecCc
Q 024451          195 ISGRLLFAGYS-NG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTN--LKIWAFGG  262 (267)
Q Consensus       195 ~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-dg~--i~~w~~~~  262 (267)
                      |+|++++.... ++  .|.++|+..++... +.   ...  ......|+|||+.|+..+. ++.  +.+++..|
T Consensus       359 pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt---~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G  426 (448)
T PRK04792        359 PDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT---STR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG  426 (448)
T ss_pred             CCCCEEEEEEecCCceEEEEEECCCCCeEE-cc---CCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            99998877654 34  45667776554321 11   111  1123479999998876554 444  44555554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=1.6e-09  Score=91.95  Aligned_cols=201  Identities=16%  Similarity=0.139  Sum_probs=121.9

Q ss_pred             ccCCeeeEEEEEEecCCCeeEEEeeCC--CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--
Q 024451           42 LSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--  117 (267)
Q Consensus        42 ~~~h~~~v~~~~~~~~~~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--  117 (267)
                      +..+...+....|+|++..++++...+  ..|.+||+.++.......      .........|+|.+.+++.+...++  
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~------~~g~~~~~~~SpDG~~la~~~~~~g~~  267 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN------FEGLNGAPAWSPDGSKLAFVLSKDGNP  267 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC------CCCCcCCeEECCCCCEEEEEEccCCCc
Confidence            345667788999999875433433333  368899998876543321      1122335778876555555655555  


Q ss_pred             eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-CC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEc
Q 024451          118 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  194 (267)
Q Consensus       118 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s  194 (267)
                      .|.++|+...  ....+..+........|+|+++.++..+. ++  .|.++|+.+++.......  .    .......|+
T Consensus       268 ~Iy~~d~~~~--~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~----~~~~~~~~S  339 (430)
T PRK00178        268 EIYVMDLASR--QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV--G----NYNARPRLS  339 (430)
T ss_pred             eEEEEECCCC--CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--C----CCccceEEC
Confidence            5778887642  33445445555677899999998776553 33  466777776654332211  1    123456799


Q ss_pred             cCCCEEEEEEeC-C--eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC-Cc--EEEEecCc
Q 024451          195 ISGRLLFAGYSN-G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TN--LKIWAFGG  262 (267)
Q Consensus       195 ~~~~~l~~g~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-g~--i~~w~~~~  262 (267)
                      |+++.++....+ +  .|+++|+.+++... +.   ...  ......|+|||+.++..+.+ +.  +.+.++.|
T Consensus       340 pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt---~~~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        340 ADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT---DTS--LDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             CCCCEEEEEEccCCceEEEEEECCCCCEEE-cc---CCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            999998876643 3  58888987654322 11   111  11245899999998876653 33  44555544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=9.1e-10  Score=93.40  Aligned_cols=212  Identities=13%  Similarity=0.111  Sum_probs=122.2

Q ss_pred             ceeeCCCCCeEEEccCC---CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC--eEEEEeC
Q 024451            2 TCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDI   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~   76 (267)
                      ...|+|||+.|+..+.+   ..|.+|++....     .   ..+....+.+....|+|++..++++.+.++  .|.+||+
T Consensus       203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-----~---~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~  274 (430)
T PRK00178        203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-----R---EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL  274 (430)
T ss_pred             eeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-----E---EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence            34799999999876644   357788875421     1   111222233456789998766555666555  5888899


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  154 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  154 (267)
                      .++......      .+........|++.+..++.+...++  .|.++++....  ...+...........|+|+++.++
T Consensus       275 ~~~~~~~lt------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~--~~~lt~~~~~~~~~~~Spdg~~i~  346 (430)
T PRK00178        275 ASRQLSRVT------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR--AERVTFVGNYNARPRLSADGKTLV  346 (430)
T ss_pred             CCCCeEEcc------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEeecCCCCccceEECCCCCEEE
Confidence            877543322      12223445678876555555555544  46666764322  222221122234578999999988


Q ss_pred             EeeCC-C--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC---CeEEEEeCCccceeeecccccC
Q 024451          155 TGSDD-G--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQN  228 (267)
Q Consensus       155 ~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~  228 (267)
                      ....+ +  .|.++|+.+++... +...  .    ......|+|+|+.++..+.+   ..|++++..... ...+    .
T Consensus       347 ~~~~~~~~~~l~~~dl~tg~~~~-lt~~--~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~-~~~l----~  414 (430)
T PRK00178        347 MVHRQDGNFHVAAQDLQRGSVRI-LTDT--S----LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV-RLPL----P  414 (430)
T ss_pred             EEEccCCceEEEEEECCCCCEEE-ccCC--C----CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEEC----c
Confidence            76643 3  57889988765432 2211  1    11234799999988776654   356667764322 1111    1


Q ss_pred             CccceEEEEEECC
Q 024451          229 SHEGRITCLGLSA  241 (267)
Q Consensus       229 ~~~~~v~~~~~~p  241 (267)
                      .+.+.+...+|+|
T Consensus       415 ~~~g~~~~p~ws~  427 (430)
T PRK00178        415 TAQGEVREPSWSP  427 (430)
T ss_pred             CCCCCcCCCccCC
Confidence            2344556667776

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.31  E-value=4.8e-10  Score=85.48  Aligned_cols=237  Identities=16%  Similarity=0.135  Sum_probs=147.7

Q ss_pred             CCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCee---eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451            8 TGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG---YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS   83 (267)
Q Consensus         8 ~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~   83 (267)
                      +|. .|+-+..+|.|.+|........ .   ..+-+...+-   .--++.|.+.+. .++++-.+|.+.+-+.....   
T Consensus        83 ~g~~~l~~a~a~G~i~~~r~~~~~ss-~---~L~~ls~~ki~~~~~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~---  154 (339)
T KOG0280|consen   83 DGDFNLLDAHARGQIQLYRNDEDESS-V---HLRGLSSKKISVVEALSLDISTSGT-KIFVSDSRGSISGVYETEMV---  154 (339)
T ss_pred             CccceeeeccccceEEEEeeccceee-e---eecccchhhhhheeeeEEEeeccCc-eEEEEcCCCcEEEEecceee---
Confidence            444 5677778888888876542111 0   1111111111   234677887665 47788888888744433221   


Q ss_pred             EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE-eeccccceeEEEEec-CCCEEEEeeCCCc
Q 024451           84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFP-DGNRFGTGSDDGT  161 (267)
Q Consensus        84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~d~~  161 (267)
                      ....+.-.+|+-.+....|+..+..++.+|+.|+.+..||+|.+...+.+ .+-|...|.++.-+| .+.++++|+-|..
T Consensus       155 le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~  234 (339)
T KOG0280|consen  155 LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC  234 (339)
T ss_pred             eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc
Confidence            22223335788899999998777788899999999999999854433322 456788888888776 5779999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC--EEEEEEeCCeEEEEeCCcccee-eecccccCCccceEEEEE
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~  238 (267)
                      |++||+++-.+.  ++.   ....+.|..++++|.-.  .++++-.+| .+|-+....... .......+.|.+-.....
T Consensus       235 i~~~DtRnm~kP--l~~---~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D  308 (339)
T KOG0280|consen  235 IRVLDTRNMGKP--LFK---AKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGD  308 (339)
T ss_pred             eeeeehhcccCc--ccc---CccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccc
Confidence            999999853321  111   22235799999988543  333333333 455554332111 111223356777777777


Q ss_pred             ECCCCCeEEEeE-CCCcEE-EE
Q 024451          239 LSADGSALCTGS-WDTNLK-IW  258 (267)
Q Consensus       239 ~~p~~~~l~sgs-~dg~i~-~w  258 (267)
                      |.....+||+|| .|+.++ +|
T Consensus       309 Wd~~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  309 WDSKDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             cccccceeeeeeccccceeeee
Confidence            755556788865 477766 78

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.31  E-value=1e-10  Score=89.11  Aligned_cols=161  Identities=19%  Similarity=0.198  Sum_probs=118.2

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++.|++.|..++++-.+|.+.+-+....     .+.-....++|.-+.+.+.|+..+.+++++|+.|+.+..||++.+.
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~  199 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK  199 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEeccee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence            35678899999999999999995554321     2223347889999999999987777789999999999999998443


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEEEeeCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDD  159 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d  159 (267)
                       ..++.  ...-|..-|.++.-+++....++||+.|-.|++||.|...+++..-. -.+.|..+..+|.-. .+..++.-
T Consensus       200 -~~i~~--n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh  275 (339)
T KOG0280|consen  200 -TFIWH--NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMH  275 (339)
T ss_pred             -ceeee--cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHh
Confidence             22221  12357888999988888788999999999999999986666654432 247899999998532 23334444


Q ss_pred             CcEEEEeCCCC
Q 024451          160 GTCRLFDIRTG  170 (267)
Q Consensus       160 ~~i~iwd~~~~  170 (267)
                      +-.+|-+...+
T Consensus       276 ~G~ki~~~~~~  286 (339)
T KOG0280|consen  276 NGAKILDSSDK  286 (339)
T ss_pred             cCceEEEeccc
Confidence            55666666543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.30  E-value=2e-08  Score=82.85  Aligned_cols=190  Identities=16%  Similarity=0.167  Sum_probs=117.3

Q ss_pred             eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccc
Q 024451           11 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ   90 (267)
Q Consensus        11 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~   90 (267)
                      .+++-..++.|.+.|.....       ....+......-..+.|+|++ ++++.++.|+.|.++|+.+.+....+..   
T Consensus         8 ~~V~~~~~~~v~viD~~t~~-------~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~~---   76 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNK-------VVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIKV---   76 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-S-------EEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE----
T ss_pred             EEEEecCCCEEEEEECCCCe-------EEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEec---
Confidence            44677788999999976522       344444332222335678865 5788888999999999999876665531   


Q ss_pred             cCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec-------cccceeEEEEecCCCEEEEeeCC-CcE
Q 024451           91 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDD-GTC  162 (267)
Q Consensus        91 ~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d-~~i  162 (267)
                         ......+++++.+..++++...++.+.++|.++. ++++.+..       ....+..+..+|....++..-.| +.|
T Consensus        77 ---G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I  152 (369)
T PF02239_consen   77 ---GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEI  152 (369)
T ss_dssp             ---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEE
T ss_pred             ---CCCcceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeE
Confidence               2235678888655445555567899999998753 34444432       23456778888888867666655 788


Q ss_pred             EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE-EeCCeEEEEeCCccce
Q 024451          163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLLAKV  219 (267)
Q Consensus       163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i~d~~~~~~  219 (267)
                      .+-|....+.+..-....    ........|+|++++++++ ..+..|-++|.++.+.
T Consensus       153 ~vVdy~d~~~~~~~~i~~----g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~  206 (369)
T PF02239_consen  153 WVVDYSDPKNLKVTTIKV----GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL  206 (369)
T ss_dssp             EEEETTTSSCEEEEEEE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred             EEEEeccccccceeeecc----cccccccccCcccceeeecccccceeEEEeeccceE
Confidence            888877654433221111    1246788999999988765 4567888888766543

...

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=1.5e-11  Score=112.77  Aligned_cols=187  Identities=17%  Similarity=0.327  Sum_probs=134.8

Q ss_pred             CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451            6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF   85 (267)
Q Consensus         6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~   85 (267)
                      +|...+.+||+.||.+++|....+.    ++-+-++ .|. ..|+.+.|+.++. .+..+..||.+-+|....   ...+
T Consensus      2217 Hp~~~~Yltgs~dgsv~~~~w~~~~----~v~~~rt-~g~-s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~~p---k~~~ 2286 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQ----QVVCFRT-AGN-SRVTRSRFNHQGN-KFGIVDGDGDLSLWQASP---KPYT 2286 (2439)
T ss_pred             CCCCceEEecCCCceEEEEeccCCC----eEEEeec-cCc-chhhhhhhcccCC-ceeeeccCCceeecccCC---ccee
Confidence            5777889999999999999876432    1112222 233 7788899988764 567788999999998862   1222


Q ss_pred             CCccccCCccceEEEEEeCCCCeEEEEec---CCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451           86 GGEFQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  162 (267)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  162 (267)
                      ..   +.|......+.|-.   ..+++++   .++.+.+||.............|.+.++++++-|....|++||++|.|
T Consensus      2287 s~---qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2287 SW---QCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred             cc---ccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcE
Confidence            21   35777777777764   2455543   467899999765443333347899999999999999999999999999


Q ss_pred             EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451          163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  223 (267)
Q Consensus       163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  223 (267)
                      ++||++..+....+..              ++ ...++++|+..|.++||++.....+..+
T Consensus      2361 ~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             EEeehHHHHHHHHhhh--------------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence            9999987654433211              34 5678999999999999998766544433

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.28  E-value=2.5e-08  Score=92.54  Aligned_cols=258  Identities=12%  Similarity=0.144  Sum_probs=153.7

Q ss_pred             eeeCC-CCCeEEEccCCCeEEEeecCCCCCC----CCCCcc-ccc-ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEe
Q 024451            3 CAFSP-TGQSVACGGLDSVCSIFNLNSPTDK----DGNLPV-SRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD   75 (267)
Q Consensus         3 ~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~----~~~~~~-~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd   75 (267)
                      +++++ +|+++++-...+.|.+||.......    .+.... ... -.++-..-..+++.+++..++++-...+.|+.+|
T Consensus       573 vavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id  652 (1057)
T PLN02919        573 LAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREID  652 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEe
Confidence            45665 4677888788889999987542100    000000 000 0011123456788876543344444567899999


Q ss_pred             CCCCeeEEEeCCcccc-----CC-------ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc------
Q 024451           76 ITTGLRTSVFGGEFQS-----GH-------TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------  137 (267)
Q Consensus        76 ~~~~~~~~~~~~~~~~-----~~-------~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~------  137 (267)
                      ..++.. .++.+....     +.       -.....+++++.++.++++...++.|++||.....  +..+.+.      
T Consensus       653 ~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~--v~~~~G~G~~~~~  729 (1057)
T PLN02919        653 FVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV--TRVFSGDGYERNL  729 (1057)
T ss_pred             cCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe--EEEEecCCccccC
Confidence            877643 222211000     00       11235688887677888888889999999975422  2222111      


Q ss_pred             ---------ccceeEEEEecCCC-EEEEeeCCCcEEEEeCCCCeeeEEEEe---------ecCCC-------CCCcEEEE
Q 024451          138 ---------EGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQ---------QHGEN-------EIPHVTSI  191 (267)
Q Consensus       138 ---------~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~~~~~-------~~~~v~~~  191 (267)
                               -.....++++|+++ .+++-+.++.|++||++++........         ..+..       .......+
T Consensus       730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv  809 (1057)
T PLN02919        730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV  809 (1057)
T ss_pred             CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence                     11235689999988 455666789999999987653211100         00000       01124688


Q ss_pred             EEccCCCEEEEEEeCCeEEEEeCCccceeeeccc----c-----cCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          192 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS----L-----QNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       192 ~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----~-----~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +++++|..+++-+.++.|++||..++........    .     ....-.....++++|+|+++++-+.++.|++|++..
T Consensus       810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            9999999888888999999999876543321110    0     011112456899999999999888999999999865


Q ss_pred             e
Q 024451          263 Y  263 (267)
Q Consensus       263 ~  263 (267)
                      .
T Consensus       890 ~  890 (1057)
T PLN02919        890 G  890 (1057)
T ss_pred             C
Confidence            3

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.27  E-value=3e-10  Score=88.37  Aligned_cols=217  Identities=18%  Similarity=0.223  Sum_probs=137.3

Q ss_pred             eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-EEEeCCcccc-----------CCccceEEEEEeCC-CCeEEEE
Q 024451           46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQS-----------GHTADVLSVSISGS-NSRMFVS  112 (267)
Q Consensus        46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~-----------~~~~~i~~~~~~~~-~~~~~~s  112 (267)
                      ..-|.++.|...+ .+|++|..+|.|.++.-+.... ...+...++.           --...|+.+.|..+ +...++.
T Consensus        25 adiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   25 ADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            3557889998876 5899999999999996543221 1111111110           12345677777753 4456778


Q ss_pred             ecCCCeEEEEeCCCccc----------------------------------ceEEe-eccccceeEEEEecCCCEEEEee
Q 024451          113 GSCDSTARLWDTRVASR----------------------------------AVRTF-HGHEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus       113 ~~~d~~i~iwd~~~~~~----------------------------------~~~~~-~~~~~~i~~~~~~~~~~~l~~~~  157 (267)
                      .+.|.+|++|.+.....                                  +.+.+ .+|..-|+++.+..|+..+++ .
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS-A  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS-A  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee-c
Confidence            89999999997642110                                  01111 367777899999999888876 4


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeecCCC---CCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecc------ccc
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQHGEN---EIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLG------SLQ  227 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~------~~~  227 (267)
                      .|-.|.+|+++-..+-..+......+   -..-|++..|+|.. +.++=.++.|.|++-|++.......-.      ..+
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            57899999986543322222111111   11247888899864 566667789999999987543221110      000


Q ss_pred             C------CccceEEEEEECCCCCeEEEeECCCcEEEEecCceEe
Q 024451          228 N------SHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR  265 (267)
Q Consensus       228 ~------~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~  265 (267)
                      .      .--..|..+.|+++|+|+++-+. -+|++||++...+
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~  305 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK  305 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC
Confidence            0      11235888999999999997654 6899999865443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=7.4e-09  Score=87.39  Aligned_cols=216  Identities=14%  Similarity=0.130  Sum_probs=120.2

Q ss_pred             eeeCCCCCeE---EEccCCCe--EEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC----eEEE
Q 024451            3 CAFSPTGQSV---ACGGLDSV--CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVL   73 (267)
Q Consensus         3 ~~~~~~g~~l---~~~~~d~~--v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~----~v~i   73 (267)
                      =.|+|||+.+   .+...++.  |.+.++....        .+.+....+.....+|+|++..++++...++    .+.+
T Consensus       190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--------~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--------GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             ceEccCCCceEEEEEEccCCCceEEEEECCCCC--------ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            3699999752   24444444  4444554321        1112222333456789998876555554333    3455


Q ss_pred             EeCCCC---eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEe--CCCcccceEEeeccccceeEEEEec
Q 024451           74 WDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD--TRVASRAVRTFHGHEGDVNTVKFFP  148 (267)
Q Consensus        74 wd~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd--~~~~~~~~~~~~~~~~~i~~~~~~~  148 (267)
                      |++..+   .......     ..........|+|.+..++.+...+|...+|.  +.........+..+...+....|+|
T Consensus       262 ~~~~~g~~g~~~~lt~-----~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP  336 (428)
T PRK01029        262 FSLETGAIGKPRRLLN-----EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP  336 (428)
T ss_pred             eecccCCCCcceEeec-----CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence            776642   2222221     11122345678876555555555667655664  3211222333444445667889999


Q ss_pred             CCCEEEEeeCC---CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe---CCeEEEEeCCccceeee
Q 024451          149 DGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---NGDCYVWDTLLAKVVLN  222 (267)
Q Consensus       149 ~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~i~d~~~~~~~~~  222 (267)
                      +|+.++..+.+   ..|.+||+.+++.... ...     ...+....|+|+|+.|+....   ...|+++|+..++...-
T Consensus       337 DG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~-----~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        337 DGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTS-----PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI  410 (428)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCC-----CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            99988876543   4699999988765332 111     123567889999998875433   35788889766543321


Q ss_pred             cccccCCccceEEEEEECCC
Q 024451          223 LGSLQNSHEGRITCLGLSAD  242 (267)
Q Consensus       223 ~~~~~~~~~~~v~~~~~~p~  242 (267)
                      .     ...+.+...+|+|-
T Consensus       411 t-----~~~g~~~~p~Ws~~  425 (428)
T PRK01029        411 V-----IGSGEKRFPSWGAF  425 (428)
T ss_pred             e-----cCCCcccCceecCC
Confidence            1     12344566777774

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=6.9e-09  Score=85.60  Aligned_cols=235  Identities=17%  Similarity=0.262  Sum_probs=138.9

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCC-eeEE-----EeeCCCeEEEEeC
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLI-----TSSGDQTCVLWDI   76 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~-----s~~~d~~v~iwd~   76 (267)
                      ..|++|..+ +.--..+.+.+|+.....     . ..  -+-|...|....++|... ..++     ..|.-..||||..
T Consensus       131 ~qfs~dEsl-~arlv~nev~f~~~~~f~-----~-~~--~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~  201 (566)
T KOG2315|consen  131 PQFSIDESL-AARLVSNEVQFYDLGSFK-----T-IQ--HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKY  201 (566)
T ss_pred             cccccchhh-hhhhhcceEEEEecCCcc-----c-ee--eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecc
Confidence            345555543 222334678888876421     1 11  122566778888887532 2333     2455567999987


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEec--C---------CCeEEEEeCCCcccceEEeeccccceeEEE
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--C---------DSTARLWDTRVASRAVRTFHGHEGDVNTVK  145 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~--~---------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~  145 (267)
                      ..+..-.......  --..+-..+.|+.....+|+.++  .         ..++++.++. +....-.+ ...++|+++.
T Consensus       202 ~~~~~~~~~a~ks--FFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L-~k~GPVhdv~  277 (566)
T KOG2315|consen  202 PEEGQHQPVANKS--FFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPL-LKEGPVHDVT  277 (566)
T ss_pred             ccccccchhhhcc--ccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEec-CCCCCceEEE
Confidence            6221111000000  01112234556544444443322  2         2356677665 22222222 3578999999


Q ss_pred             EecCCCEEEEe--eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE-EEe--CCeEEEEeCCcccee
Q 024451          146 FFPDGNRFGTG--SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYS--NGDCYVWDTLLAKVV  220 (267)
Q Consensus       146 ~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-g~~--dg~i~i~d~~~~~~~  220 (267)
                      |+|+++-|+++  -.=-++.|||++- +.+..+.       .++-.++-|+|.|++++. |..  .|.+-+||+...+.+
T Consensus       278 W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~-------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i  349 (566)
T KOG2315|consen  278 WSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFP-------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI  349 (566)
T ss_pred             ECCCCCEEEEEEecccceEEEEcCCC-CEeEeCC-------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence            99999887654  3556899999873 3332221       124578889999998765 443  489999999887766


Q ss_pred             eecccccCCccceEEEEEECCCCCeEEEeEC------CCcEEEEecCceE
Q 024451          221 LNLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKIWAFGGYR  264 (267)
Q Consensus       221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~------dg~i~~w~~~~~~  264 (267)
                      .++.      -..-+-.+|+|||+++++++.      |+-++||.+.|..
T Consensus       350 ~~~~------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  350 AKFK------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             cccc------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence            5442      122355899999999998776      7889999998753

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.25  E-value=1.6e-10  Score=86.62  Aligned_cols=192  Identities=19%  Similarity=0.239  Sum_probs=115.4

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccc-cccCCeeeEEEEEEecCCCeeEEEeeC-----CCeEEEEeCCCCee
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSG-----DQTCVLWDITTGLR   81 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~-----d~~v~iwd~~~~~~   81 (267)
                      .++.+++++.||.+.+.+.+...      .+.+ +-..|.+.-. ..+.... +.+.++..     =+..++|+++... 
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~------~~~~~i~~~~~~~as-~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~-  170 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDL------ALMSRIPSIHSGSAS-RKICRHG-NSILSGGCGNWNAQDNFYANTLDPIK-  170 (319)
T ss_pred             cCCceEecCCCceEEEEechHHH------hhhhhcccccccccc-cceeecc-cEEecCCcceEeeccceeeecccccc-
Confidence            45679999999999999976411      1111 1111222111 1111112 22222211     1234556654321 


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDG  160 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~  160 (267)
                        .+....  .....+.+++-+|..++++++|+.||.+-+||.+....+...+++|+.+++.+-|+| ++..|.++++||
T Consensus       171 --t~~~~~--~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG  246 (319)
T KOG4714|consen  171 --TLIPSK--KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG  246 (319)
T ss_pred             --cccccc--cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence              111111  122337888888888888999999999999999876666777889999999999999 578899999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCC---CCCc--------------EEEE-EEccCCCEEEEEEeCCeEEEEe
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGEN---EIPH--------------VTSI-AFSISGRLLFAGYSNGDCYVWD  213 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~---~~~~--------------v~~~-~~s~~~~~l~~g~~dg~i~i~d  213 (267)
                      .+..||-.+ +.+..-.+.....   ...+              ..++ .|+.-|..+++|+.-+-|++++
T Consensus       247 slw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  247 SLWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cEEEEcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence            999999764 2211110000000   0000              1111 3555678888888888888775

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.24  E-value=5.1e-11  Score=100.99  Aligned_cols=232  Identities=17%  Similarity=0.214  Sum_probs=150.1

Q ss_pred             EEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCcccc
Q 024451           12 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS   91 (267)
Q Consensus        12 l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~   91 (267)
                      +++.+ .-.--+|++..+...    .+...+.||...|+.+.|+|+....+++++.|-.+..||+.+.......-    .
T Consensus        85 iVsts-~qkaiiwnlA~ss~~----aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~----~  155 (1081)
T KOG0309|consen   85 IVSTS-NQKAIIWNLAKSSSN----AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST----S  155 (1081)
T ss_pred             EEecC-cchhhhhhhhcCCcc----ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee----e
Confidence            44433 334558888765432    35567789999999999999888899999999999999998764322110    1


Q ss_pred             CCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCC
Q 024451           92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTG  170 (267)
Q Consensus        92 ~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~  170 (267)
                      .-......|+|+-.+...+ +.+-...|++||.+.+..+...+++|...|+.++|..- -..+.+++.|++|++||-+..
T Consensus       156 ~w~s~asqVkwnyk~p~vl-asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  156 SWRSAASQVKWNYKDPNVL-ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             cccccCceeeecccCcchh-hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            1222345677776555543 44556679999999888889999999999999999763 346788999999999998653


Q ss_pred             eeeEEEEeecCCCCCCcEEEEEEccCCC--EEEEEEeCCeEEEEeCCccc----------eeeecccccCCccceEEEEE
Q 024451          171 HQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVWDTLLAK----------VVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~g~~dg~i~i~d~~~~~----------~~~~~~~~~~~~~~~v~~~~  238 (267)
                      .......    .....++..-++-|=|.  ++.---.+..+.+++.+...          .+..+    .+|.+.|...-
T Consensus       235 t~e~~~~----vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F----~GH~D~V~eFl  306 (1081)
T KOG0309|consen  235 TTESKRT----VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF----VGHDDVVLEFL  306 (1081)
T ss_pred             cccccee----ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee----cCcchHHHHHh
Confidence            3221111    11223455556666443  22222222355555543321          22222    45766665444


Q ss_pred             ECCCC----------CeEEEeECCCcEEEEecC
Q 024451          239 LSADG----------SALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       239 ~~p~~----------~~l~sgs~dg~i~~w~~~  261 (267)
                      |-..+          -.|++=|.|.++|+|.++
T Consensus       307 WR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  307 WRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             hhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence            43222          268999999999999874

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.23  E-value=1.6e-09  Score=84.37  Aligned_cols=196  Identities=16%  Similarity=0.245  Sum_probs=129.0

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      ..+.++...|+.+-..|++.-+.+...   -..+...+....|..+|+.+-|+-.. +++++.+.|..+.---.+.+...
T Consensus        74 ~~y~~e~~~L~vg~~ngtvtefs~sed---fnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~l  149 (404)
T KOG1409|consen   74 MEYVSESRRLYVGQDNGTVTEFALSED---FNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRL  149 (404)
T ss_pred             eeeeccceEEEEEEecceEEEEEhhhh---hhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcc
Confidence            457788889999999999999887652   22344567788999999999997643 58999999988764444443322


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC-cccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      .-+...  .........+    .   ....|...|.|.+-.+.. .-.++..+.+|.+.+.++.|.|....+.+|..|..
T Consensus       150 g~Y~~~--~~~t~~~~d~----~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~  220 (404)
T KOG1409|consen  150 GGYNFE--TPASALQFDA----L---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS  220 (404)
T ss_pred             cceEee--ccCCCCceee----E---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc
Confidence            211100  0000000000    0   112333344444333221 23467788899999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  215 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~  215 (267)
                      +.+||+--.+-.....+.    +...|..++..+.-+.+++...||.|-+||+.
T Consensus       221 vi~wdigg~~g~~~el~g----h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  221 VIMWDIGGRKGTAYELQG----HNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             eEEEeccCCcceeeeecc----chhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            999998654433322221    22347777777777889999999999999973

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.21  E-value=1.2e-10  Score=96.14  Aligned_cols=161  Identities=17%  Similarity=0.301  Sum_probs=111.7

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG   87 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   87 (267)
                      +.+.+++++.|++|++|.+.......+...+..++..|+.+|+.+.|..+. +++  ++.|+-|.+||.--+........
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i--~ScD~giHlWDPFigr~Laq~~d  822 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSI--ASCDGGIHLWDPFIGRLLAQMED  822 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-cee--eeccCcceeecccccchhHhhhc
Confidence            346689999999999999987554444455777899999999999998754 455  45688999999865544332211


Q ss_pred             ccccCCccceEEEEEeCC-CCeEEEEe-cCCCeEEEEeCCCcccc--eEEe--eccccceeEEEEecCCCEEEEeeCCCc
Q 024451           88 EFQSGHTADVLSVSISGS-NSRMFVSG-SCDSTARLWDTRVASRA--VRTF--HGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~-~~~~~~s~-~~d~~i~iwd~~~~~~~--~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      .   ...+....+...++ +..+++.+ +...+|+++|.+.....  .+.-  .+.+..+.+++..+.|+.++.+-..|+
T Consensus       823 a---pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGc  899 (1034)
T KOG4190|consen  823 A---PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGC  899 (1034)
T ss_pred             C---cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCc
Confidence            1   11222223333333 33444444 67889999998754321  1111  244566889999999999999999999


Q ss_pred             EEEEeCCCCeeeE
Q 024451          162 CRLFDIRTGHQLQ  174 (267)
Q Consensus       162 i~iwd~~~~~~~~  174 (267)
                      |-+.|.++++.+.
T Consensus       900 i~~LDaR~G~vIN  912 (1034)
T KOG4190|consen  900 IAILDARNGKVIN  912 (1034)
T ss_pred             EEEEecCCCceec
Confidence            9999999988654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.21  E-value=3.9e-11  Score=98.86  Aligned_cols=207  Identities=21%  Similarity=0.325  Sum_probs=132.6

Q ss_pred             cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-----eEEEeCCccccCCccceEEEEEeCCCCeEEEEe
Q 024451           39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-----RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  113 (267)
Q Consensus        39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~  113 (267)
                      ...+.||...|..+.... +++-+++++.|++|++|.+....     ..+.+   ..+.|+.+|.++-+... .+.+  +
T Consensus       728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQf---TY~aHkk~i~~igfL~~-lr~i--~  800 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQF---TYQAHKKPIHDIGFLAD-LRSI--A  800 (1034)
T ss_pred             eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeee---EhhhccCcccceeeeec-ccee--e
Confidence            345779998888876654 34568999999999999986431     11111   12469999999988754 3443  5


Q ss_pred             cCCCeEEEEeCCCcccceEEe-e----ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcE
Q 024451          114 SCDSTARLWDTRVASRAVRTF-H----GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  188 (267)
Q Consensus       114 ~~d~~i~iwd~~~~~~~~~~~-~----~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v  188 (267)
                      +.||.|.+||.-.++ +..++ .    +-.+.|.|+.--...-.++.++...+|+++|.+...-.-.+..........-+
T Consensus       801 ScD~giHlWDPFigr-~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~  879 (1034)
T KOG4190|consen  801 SCDGGIHLWDPFIGR-LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT  879 (1034)
T ss_pred             eccCcceeecccccc-hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence            778999999975433 22222 1    11223444432111123344467889999999887544333333223333457


Q ss_pred             EEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEE-E
Q 024451          189 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI-W  258 (267)
Q Consensus       189 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~-w  258 (267)
                      .+++..+.|++++++-++|.+.+.|.++++.+.....+    +-.+..++ .|..+.|+....|.++.+ |
T Consensus       880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm----ecdllqla-apsdq~L~~saldHslaVnW  945 (1034)
T KOG4190|consen  880 RAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM----ECDLLQLA-APSDQALAQSALDHSLAVNW  945 (1034)
T ss_pred             eEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc----cchhhhhc-CchhHHHHhhcccceeEeee
Confidence            88999999999999999999999999999877654321    11222222 255666666666777766 6

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.21  E-value=2.4e-08  Score=82.94  Aligned_cols=193  Identities=17%  Similarity=0.235  Sum_probs=136.8

Q ss_pred             CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEE------ec-------------CCCeeEEEee
Q 024451            6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY------VP-------------DEDTHLITSS   66 (267)
Q Consensus         6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~------~~-------------~~~~~l~s~~   66 (267)
                      .|.+.++|....||-+|+|+...+.......|.. .+.   +..++..|      +|             .+...++-|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-~~s---~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA-SLS---GTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccch-hcc---CcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            4667899999999999999987654322222221 111   12222222      12             1234677788


Q ss_pred             CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEE
Q 024451           67 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF  146 (267)
Q Consensus        67 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~  146 (267)
                      ..|.|.+|+...++-...+..   ..|.+.++++..+. ....+-+++.|+.+..|+... ...++..++-...+.++..
T Consensus        78 ~~g~v~~ys~~~g~it~~~st---~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~i  152 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLST---DKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCI  152 (541)
T ss_pred             CCccEEEEEecCCeEEEEEec---CCCCCcceeeeccc-ccCceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEE
Confidence            899999999988865555432   46888888887664 345677999999999999863 4567777777778999999


Q ss_pred             ecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC-----CCEEEEEE-eCCeEEEEeC
Q 024451          147 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-----GRLLFAGY-SNGDCYVWDT  214 (267)
Q Consensus       147 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~g~-~dg~i~i~d~  214 (267)
                      +||++.+++++  ++|++||+++.+.+..|.     ++..+|+++.|...     |.+++++. .+..+.+|-.
T Consensus       153 s~D~~~l~~as--~~ik~~~~~~kevv~~ft-----gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v  219 (541)
T KOG4547|consen  153 SPDGKILLTAS--RQIKVLDIETKEVVITFT-----GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV  219 (541)
T ss_pred             cCCCCEEEecc--ceEEEEEccCceEEEEec-----CCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence            99999999887  499999999987766553     34457999998766     66666654 4566777754

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=9.4e-10  Score=90.94  Aligned_cols=188  Identities=13%  Similarity=0.205  Sum_probs=127.8

Q ss_pred             EEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccc-
Q 024451           12 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ-   90 (267)
Q Consensus        12 l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-   90 (267)
                      |.+++....|.-.+++...       ....+.-..+.+++|..++.. .+|++|+.||.|..||..+......+..... 
T Consensus       148 ly~~gsg~evYRlNLEqGr-------fL~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v  219 (703)
T KOG2321|consen  148 LYLVGSGSEVYRLNLEQGR-------FLNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSV  219 (703)
T ss_pred             EEEeecCcceEEEEccccc-------cccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeeccccc
Confidence            3444444456666765421       233344455789999999865 5788899999999999987665554432211 


Q ss_pred             cCC-----ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC--CCEEEEeeCCCcEE
Q 024451           91 SGH-----TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCR  163 (267)
Q Consensus        91 ~~~-----~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~  163 (267)
                      ..|     ...|+++.|.. ++-.++.|..+|.+.|||++........-++..-+|..+.|.+.  ++.+++ .....++
T Consensus       220 ~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~k  297 (703)
T KOG2321|consen  220 NSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILK  297 (703)
T ss_pred             CCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhh
Confidence            112     33488999984 36678999999999999998644322222233457889999775  344554 3456899


Q ss_pred             EEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451          164 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  215 (267)
Q Consensus       164 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~  215 (267)
                      |||-.+++.....-.      ...+..+|+-|++..++++-.++.+..|=+.
T Consensus       298 iWd~~~Gk~~asiEp------t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  298 IWDECTGKPMASIEP------TSDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             hcccccCCceeeccc------cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence            999999887654321      1247889999999999999888877776543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=1.1e-09  Score=92.90  Aligned_cols=238  Identities=16%  Similarity=0.170  Sum_probs=151.8

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCC---C-----CCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEE
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD---G-----NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL   73 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~---~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~i   73 (267)
                      |.+|+....++++||.||.+++-.+...+..-   +     .+..-.++.||+..|.-+.|+... +.|-+...+|-|.+
T Consensus        19 c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~GlIiV   97 (1189)
T KOG2041|consen   19 CAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTSGLIIV   97 (1189)
T ss_pred             EEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCCceEEE
Confidence            56799999999999999999999887643211   1     122346789999999999998654 56888899999999


Q ss_pred             EeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE
Q 024451           74 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  153 (267)
Q Consensus        74 wd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  153 (267)
                      |-+-.+.-....   ..+...+.|.+++|...+ ..+...-.||.|.+=.+...+---+.++  ..-...+.|++|.+.+
T Consensus        98 WmlykgsW~EEM---iNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   98 WMLYKGSWCEEM---INNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQA  171 (1189)
T ss_pred             EeeecccHHHHH---hhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHHH
Confidence            987655321111   112345567888888644 4456666777766555432111011111  1123467899998888


Q ss_pred             EEeeCCCcEEEEeCCCCeee-------EEEEeecCCCCCCcEEEEEE--------ccCCCEEEEEEeCCeEEEEeCCccc
Q 024451          154 GTGSDDGTCRLFDIRTGHQL-------QVYYQQHGENEIPHVTSIAF--------SISGRLLFAGYSNGDCYVWDTLLAK  218 (267)
Q Consensus       154 ~~~~~d~~i~iwd~~~~~~~-------~~~~~~~~~~~~~~v~~~~~--------s~~~~~l~~g~~dg~i~i~d~~~~~  218 (267)
                      ..+-..|.+.++|-...-.+       ...... ..+....+..++|        -|+...++.++.+|.+.|-.-....
T Consensus       172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~-~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~  250 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGI-FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP  250 (1189)
T ss_pred             HhhhcCCcEEEecccccHHHhhhhceEEeeeee-ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence            88888899999997543111       111110 0111123455555        2578899999999988765432222


Q ss_pred             eeeecccccCCccceEEEEEECCCCCeEEEeECC
Q 024451          219 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  252 (267)
Q Consensus       219 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d  252 (267)
                      .+.-+     ...-.+..+.|+|+|..||.++.|
T Consensus       251 ~Pvv~-----dtgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  251 EPVVV-----DTGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             CCeEE-----ecccEeecceecCCCcEEEEccCc
Confidence            11111     122468889999999999998875

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.20  E-value=1.4e-07  Score=77.70  Aligned_cols=234  Identities=13%  Similarity=0.154  Sum_probs=133.3

Q ss_pred             CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC----CCeEEEEeCCCC-eeEEEeCCccccCC
Q 024451           19 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG----DQTCVLWDITTG-LRTSVFGGEFQSGH   93 (267)
Q Consensus        19 ~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----d~~v~iwd~~~~-~~~~~~~~~~~~~~   93 (267)
                      +.|.+|+++..+   +.+........ ......+.++|++. +|.+..+    ++.|..|++... .....+.....  .
T Consensus        13 ~gI~~~~~d~~~---g~l~~~~~~~~-~~~Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~--~   85 (345)
T PF10282_consen   13 GGIYVFRFDEET---GTLTLVQTVAE-GENPSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS--G   85 (345)
T ss_dssp             TEEEEEEEETTT---TEEEEEEEEEE-SSSECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE--S
T ss_pred             CcEEEEEEcCCC---CCceEeeeecC-CCCCceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeeecc--C
Confidence            789999985422   22222222211 12223467788764 5666555    578999988753 12222211110  1


Q ss_pred             ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE--eec-----------cccceeEEEEecCCCEEEEee-CC
Q 024451           94 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT--FHG-----------HEGDVNTVKFFPDGNRFGTGS-DD  159 (267)
Q Consensus        94 ~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~--~~~-----------~~~~i~~~~~~~~~~~l~~~~-~d  159 (267)
                      ......+++++....++++...+|.+.++++.........  ...           .....+++.++|+++++++.. ..
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~  165 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA  165 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence            2234567788766656666667999999998753322111  111           123468999999999887653 34


Q ss_pred             CcEEEEeCCCCee-eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCC--cc--ceeeecccccCCc--c
Q 024451          160 GTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTL--LA--KVVLNLGSLQNSH--E  231 (267)
Q Consensus       160 ~~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~--~~--~~~~~~~~~~~~~--~  231 (267)
                      ..|.+|+++.... +....... .........+.|+|+++++.+.. .++.|.+|+..  .+  +.......++...  .
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~~-~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~  244 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSIK-VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE  244 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEEE-CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred             CEEEEEEEeCCCceEEEeeccc-cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence            4899999976542 21111111 11223578999999999887665 46889999876  22  1222222221111  2


Q ss_pred             ceEEEEEECCCCCeEEEeEC-CCcEEEEec
Q 024451          232 GRITCLGLSADGSALCTGSW-DTNLKIWAF  260 (267)
Q Consensus       232 ~~v~~~~~~p~~~~l~sgs~-dg~i~~w~~  260 (267)
                      .....++++|||++|.++.. ++.|.+|++
T Consensus       245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  245 NAPAEIAISPDGRFLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred             CCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence            25778999999999876554 678999998

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.20  E-value=1.3e-09  Score=84.78  Aligned_cols=219  Identities=17%  Similarity=0.240  Sum_probs=150.2

Q ss_pred             cccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC-CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC
Q 024451           37 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI-TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  115 (267)
Q Consensus        37 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~  115 (267)
                      .+.+.++||.+.|+.....|.++ -+++.+.|.++|+|-- ++++.-..+.    ..-...+.++.+.+ ..+.+..+-.
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~----~~mP~~~~~~~y~~-e~~~L~vg~~   88 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIY----HYMPSPCSAMEYVS-ESRRLYVGQD   88 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhh----hhCCCCceEeeeec-cceEEEEEEe
Confidence            35667899999999988888654 5899999999999943 2332111110    11233456666664 4566777888


Q ss_pred             CCeEEEEeCCCc---ccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEe--------------
Q 024451          116 DSTARLWDTRVA---SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ--------------  178 (267)
Q Consensus       116 d~~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------  178 (267)
                      .|++.-+.+...   ....+....|...+..+.|+.....+++.+.|+.+.---.+.++.+..+.-              
T Consensus        89 ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~  168 (404)
T KOG1409|consen   89 NGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYA  168 (404)
T ss_pred             cceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEE
Confidence            888887765321   123455668889999999988888888888887765322333221111000              


Q ss_pred             ----------------------ecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451          179 ----------------------QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  236 (267)
Q Consensus       179 ----------------------~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  236 (267)
                                            .....+..++.+++|.+....+++|.+|..+.+||+-..+...-.   ...|...|..
T Consensus       169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e---l~gh~~kV~~  245 (404)
T KOG1409|consen  169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE---LQGHNDKVQA  245 (404)
T ss_pred             EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee---eccchhhhhh
Confidence                                  001224457889999999999999999999999997654433211   2468888888


Q ss_pred             EEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          237 LGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       237 ~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      +..-+.-+.|.+++.||.|-+|+++--+
T Consensus       246 l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  246 LSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             hhhhhhheeeeeccCCCeEEEEecccee
Confidence            8888888899999999999999986543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.19  E-value=1.3e-08  Score=76.86  Aligned_cols=242  Identities=15%  Similarity=0.058  Sum_probs=147.0

Q ss_pred             CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451            9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE   88 (267)
Q Consensus         9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   88 (267)
                      ..+|+.||.-|...+|.....+.      ....-..|+..|.-+.=.-+....+..++.|.++++.+++-+......   
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~------h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~---  154 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDG------HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV---  154 (344)
T ss_pred             ccEEEeccccceeeeecccCccc------ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee---
Confidence            35689999999999999875321      111112233333222111122234667888999998888654322211   


Q ss_pred             cccCCcc--ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-eEEee-ccccceeEEEEecCCCEEEEeeCCCcEEE
Q 024451           89 FQSGHTA--DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRL  164 (267)
Q Consensus        89 ~~~~~~~--~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  164 (267)
                          |..  ..+++.+++ +.++.++.+....|-.|.+...... .+... .-.+.-.+..|+.....||++.+||++.|
T Consensus       155 ----h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I  229 (344)
T KOG4532|consen  155 ----HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI  229 (344)
T ss_pred             ----eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEE
Confidence                222  266777875 5677788888888888887654332 22222 22334568889988899999999999999


Q ss_pred             EeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC--EEEEEEeCCeEEEEeCCccceeeecc---cccCCccc-eEEEEE
Q 024451          165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVWDTLLAKVVLNLG---SLQNSHEG-RITCLG  238 (267)
Q Consensus       165 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~g~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~-~v~~~~  238 (267)
                      ||++.............+.+.+.+..+.|++-|.  .|+-.-.=+.+++.|++..+....+.   .....|.. .|....
T Consensus       230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~  309 (344)
T KOG4532|consen  230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTN  309 (344)
T ss_pred             EEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccc
Confidence            9998755443333333344667899999998664  45555455789999988765433221   11123433 378888


Q ss_pred             ECCCCCeEEEeECCCcEEEEecCceEe
Q 024451          239 LSADGSALCTGSWDTNLKIWAFGGYRR  265 (267)
Q Consensus       239 ~~p~~~~l~sgs~dg~i~~w~~~~~~~  265 (267)
                      |+.++.-..+.+.+ .+.=|.+...+|
T Consensus       310 f~~~n~s~~v~~e~-~~ae~ni~srsR  335 (344)
T KOG4532|consen  310 FNNENESNDVKNEL-QGAEYNILSRSR  335 (344)
T ss_pred             ccCCCcccccccch-hhheeeccccce
Confidence            88776665554443 344454444444

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=4.4e-08  Score=82.72  Aligned_cols=202  Identities=12%  Similarity=0.091  Sum_probs=114.5

Q ss_pred             CeeeEEEEEEecCCCe--eEEEeeCCC--eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC---
Q 024451           45 HKGYVSCCQYVPDEDT--HLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS---  117 (267)
Q Consensus        45 h~~~v~~~~~~~~~~~--~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~---  117 (267)
                      ....+.+=+|+|++..  ++++...++  .|.+.++.++....+..      .........|+|.+.+++.+...+|   
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~------~~g~~~~p~wSPDG~~Laf~s~~~g~~d  256 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA------LQGNQLMPTFSPRKKLLAFISDRYGNPD  256 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec------CCCCccceEECCCCCEEEEEECCCCCcc
Confidence            3444566789998764  333444443  47777888775444321      1222335678876555555443333   


Q ss_pred             -eEEEEeCCCc--ccceEEeeccccceeEEEEecCCCEEEEee-CCCcEEEEeC--CC-CeeeEEEEeecCCCCCCcEEE
Q 024451          118 -TARLWDTRVA--SRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDI--RT-GHQLQVYYQQHGENEIPHVTS  190 (267)
Q Consensus       118 -~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~--~~-~~~~~~~~~~~~~~~~~~v~~  190 (267)
                       .+..|++...  .........+........|+|+|+.|+..+ .++...+|..  .. +.....+..     ....+..
T Consensus       257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-----~~~~~~~  331 (428)
T PRK01029        257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-----KYRNSSC  331 (428)
T ss_pred             eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-----CCCCccc
Confidence             3444665431  122222322223446789999999887665 4666666643  32 121222211     1123567


Q ss_pred             EEEccCCCEEEEEEeC---CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC-C--CcEEEEecCc
Q 024451          191 IAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-D--TNLKIWAFGG  262 (267)
Q Consensus       191 ~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-d--g~i~~w~~~~  262 (267)
                      ..|||+|+.|+....+   ..|++||+..++...-.     .....+....|+|||+.|+..+. +  ..|.++++.+
T Consensus       332 p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-----~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~  404 (428)
T PRK01029        332 PAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-----TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT  404 (428)
T ss_pred             eeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-----CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            7899999988776543   47999998776543211     12234567899999998875433 3  3466666643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.13  E-value=4.2e-09  Score=81.23  Aligned_cols=253  Identities=19%  Similarity=0.340  Sum_probs=154.3

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe------------eeEEEEEEe-cCCCeeEEEeeCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK------------GYVSCCQYV-PDEDTHLITSSGD   68 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~-~~~~~~l~s~~~d   68 (267)
                      +..|...|.+|+||...|.|.+|......  .-+.+....+++|.            -.|..+.|. +.+...++..+.|
T Consensus        31 aVefd~tg~YlatGDkgGRVvlfer~~s~--~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNd  108 (460)
T COG5170          31 AVEFDETGLYLATGDKGGRVVLFEREKSY--GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND  108 (460)
T ss_pred             EEEeccccceEeecCCCceEEEeeccccc--ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCC
Confidence            35688899999999999999999754321  11111222344443            235566665 3444567778899


Q ss_pred             CeEEEEeCCCCeeEE-------------------------------------EeCCc-cccCCccceEEEEEeCCCCeEE
Q 024451           69 QTCVLWDITTGLRTS-------------------------------------VFGGE-FQSGHTADVLSVSISGSNSRMF  110 (267)
Q Consensus        69 ~~v~iwd~~~~~~~~-------------------------------------~~~~~-~~~~~~~~i~~~~~~~~~~~~~  110 (267)
                      ++|++|.+.......                                     ..+.+ ..+.|.--++++.+.. +...+
T Consensus       109 ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~  187 (460)
T COG5170         109 KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETL  187 (460)
T ss_pred             ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chhee
Confidence            999999875321000                                     00000 1246777788888874 34444


Q ss_pred             EEecCCCeEEEEeCCCcccc--eEEeeccc-----cceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEE---EEee
Q 024451          111 VSGSCDSTARLWDTRVASRA--VRTFHGHE-----GDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQV---YYQQ  179 (267)
Q Consensus       111 ~s~~~d~~i~iwd~~~~~~~--~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~  179 (267)
                      + .+.|-.|.+|++......  +..++.|+     .-|++..|+|. .++|.-.+..|.|++-|++....-..   ++..
T Consensus       188 l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~  266 (460)
T COG5170         188 L-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL  266 (460)
T ss_pred             e-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh
Confidence            4 456778999987643322  23334443     23789999995 57777778899999999984321100   0000


Q ss_pred             --cC------CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccC---------CccceE---EEEEE
Q 024451          180 --HG------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN---------SHEGRI---TCLGL  239 (267)
Q Consensus       180 --~~------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~~v---~~~~~  239 (267)
                        .+      ..-...|+.+.|+++|+++++-.. -.+++||+...+.+.....++.         .-.+.|   ..+.|
T Consensus       267 ~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisf  345 (460)
T COG5170         267 TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISF  345 (460)
T ss_pred             ccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEe
Confidence              00      001234788999999999998643 4799999865443322110100         112222   45788


Q ss_pred             CCCCCeEEEeECCCcEEEEe
Q 024451          240 SADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w~  259 (267)
                      |-|.+.+++||.....-+|.
T Consensus       346 Sgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         346 SGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             cCCcccccccccccceeeec
Confidence            88899999999988777775

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.11  E-value=1.9e-09  Score=85.45  Aligned_cols=161  Identities=18%  Similarity=0.214  Sum_probs=107.1

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS   83 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~   83 (267)
                      .++|++++++++..+....++++....+ ..+.-....+......+..+...... ...-.++....+.+|....+....
T Consensus        69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~~~ai~~~~~~~sv-~v~dkagD~~~~di~s~~~~~~~~  146 (390)
T KOG3914|consen   69 LTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPKRPTAISFIREDTSV-LVADKAGDVYSFDILSADSGRCEP  146 (390)
T ss_pred             ccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecccCcceeeeeeccceE-EEEeecCCceeeeeecccccCcch
Confidence            3678999999999999988888765332 11111111222222333333332211 112234556677788776544333


Q ss_pred             EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE-eeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451           84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDDGTC  162 (267)
Q Consensus        84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  162 (267)
                            ..||...+..|.+++ ++++++++..|..||+-..... ..+.. ..||..-|..++.-++ ..|+++|.|+++
T Consensus       147 ------~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~-f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tl  217 (390)
T KOG3914|consen  147 ------ILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPAT-FVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTL  217 (390)
T ss_pred             ------hhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcc-cchhhhccccHhheeeeeeccC-ceeeecCCCCcE
Confidence                  357999999999996 4588999999999998765432 23333 3589999999998754 568999999999


Q ss_pred             EEEeCCCCeeeEE
Q 024451          163 RLFDIRTGHQLQV  175 (267)
Q Consensus       163 ~iwd~~~~~~~~~  175 (267)
                      ++||+++++++..
T Consensus       218 r~Wd~~sgk~L~t  230 (390)
T KOG3914|consen  218 RLWDITSGKLLDT  230 (390)
T ss_pred             EEEecccCCcccc
Confidence            9999999987643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.05  E-value=1.2e-06  Score=71.23  Aligned_cols=242  Identities=11%  Similarity=0.101  Sum_probs=131.6

Q ss_pred             eCCCCCeEEEccC----------CCeEEEeecCCCCCCCCCCcc--cccccCCeeeEEEEEEecCCCeeEEEee-C-CCe
Q 024451            5 FSPTGQSVACGGL----------DSVCSIFNLNSPTDKDGNLPV--SRMLSGHKGYVSCCQYVPDEDTHLITSS-G-DQT   70 (267)
Q Consensus         5 ~~~~g~~l~~~~~----------d~~v~~w~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~-d~~   70 (267)
                      ++|||+.|..+..          +..|.+||...... ..+.+.  ...+. ....-..++++|++. +|+... . +..
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~-~~~~~~~~~ls~dgk-~l~V~n~~p~~~  129 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFL-VGTYPWMTSLTPDNK-TLLFYQFSPSPA  129 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhh-ccCccceEEECCCCC-EEEEecCCCCCE
Confidence            7899977766665          78999999876321 111111  00000 011223567788775 455443 3 789


Q ss_pred             EEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce----EEeecccccee-EEE
Q 024451           71 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV----RTFHGHEGDVN-TVK  145 (267)
Q Consensus        71 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~~i~-~~~  145 (267)
                      |-+.|+.+++.+..+..    +....+.   ..+ +... ..-+.||...........+..    ..+.+....+. .-.
T Consensus       130 V~VvD~~~~kvv~ei~v----p~~~~vy---~t~-e~~~-~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~  200 (352)
T TIGR02658       130 VGVVDLEGKAFVRMMDV----PDCYHIF---PTA-NDTF-FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPA  200 (352)
T ss_pred             EEEEECCCCcEEEEEeC----CCCcEEE---Eec-CCcc-EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCc
Confidence            99999999876665532    1111111   111 1111 122334443332222111100    11111011110 013


Q ss_pred             Eec-CCCEEEEeeCCCcEEEEeCCCCee-----eEEEEeecC--CCCCCcEEEEEEccCCCEEEEEE----------eCC
Q 024451          146 FFP-DGNRFGTGSDDGTCRLFDIRTGHQ-----LQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGY----------SNG  207 (267)
Q Consensus       146 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~g~----------~dg  207 (267)
                      |.+ +++++....+ |+|.+.|+.....     ...+.....  .-.......++++++++.+++..          ..+
T Consensus       201 ~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~  279 (352)
T TIGR02658       201 YSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR  279 (352)
T ss_pred             eEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence            455 7877776666 9999999644321     111111000  00122344589999999887742          125


Q ss_pred             eEEEEeCCccceeeecccccCCccceEEEEEECCCCC-eEEEeE-CCCcEEEEecCceE
Q 024451          208 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGS-WDTNLKIWAFGGYR  264 (267)
Q Consensus       208 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~sgs-~dg~i~~w~~~~~~  264 (267)
                      .|.++|..+.+.+..+.     -...+..++++||++ .|.+.. .++.|.+.|...++
T Consensus       280 ~V~ViD~~t~kvi~~i~-----vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       280 FLFVVDAKTGKRLRKIE-----LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             EEEEEECCCCeEEEEEe-----CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence            89999999888776542     234788999999999 777555 57889999976554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.05  E-value=3.1e-07  Score=85.41  Aligned_cols=215  Identities=16%  Similarity=0.181  Sum_probs=129.8

Q ss_pred             eeeCCCCCeE-EEccCCCeEEEeecCCCCCCC--CCCcccccccCC-------eeeEEEEEEecCCCeeEEEeeCCCeEE
Q 024451            3 CAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKD--GNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSSGDQTCV   72 (267)
Q Consensus         3 ~~~~~~g~~l-~~~~~d~~v~~w~~~~~~~~~--~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~l~s~~~d~~v~   72 (267)
                      ++++++++.| ++-...+.|+++|.....-..  +.........+.       -..-+.++++|+++.++++.+.++.|+
T Consensus       629 Iavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~  708 (1057)
T PLN02919        629 LAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIW  708 (1057)
T ss_pred             EEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEE
Confidence            5677777654 444455778888864321000  000000000000       012246888886666777778889999


Q ss_pred             EEeCCCCeeEEEeCCcc----ccCC------ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE----------
Q 024451           73 LWDITTGLRTSVFGGEF----QSGH------TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR----------  132 (267)
Q Consensus        73 iwd~~~~~~~~~~~~~~----~~~~------~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~----------  132 (267)
                      +||..++.... +.+..    ..++      -.....+++++.+..++++...++.|++||+........          
T Consensus       709 v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~  787 (1057)
T PLN02919        709 EYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN  787 (1057)
T ss_pred             EEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence            99998764322 21110    0011      123456888876666888888889999999864321110          


Q ss_pred             --Eeecc--------ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC---------CCCCCcEEEEEE
Q 024451          133 --TFHGH--------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG---------ENEIPHVTSIAF  193 (267)
Q Consensus       133 --~~~~~--------~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~v~~~~~  193 (267)
                        .+..+        -..-..++++++|+.+++-..++.|++||..++...... ....         .........+++
T Consensus       788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G~~G~~dG~~~~a~l~~P~GIav  866 (1057)
T PLN02919        788 LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTGKAGFKDGKALKAQLSEPAGLAL  866 (1057)
T ss_pred             cccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccCCcCCCCCcccccccCCceEEEE
Confidence              00000        011357889999999999999999999999876543322 1100         011124678999


Q ss_pred             ccCCCEEEEEEeCCeEEEEeCCccce
Q 024451          194 SISGRLLFAGYSNGDCYVWDTLLAKV  219 (267)
Q Consensus       194 s~~~~~l~~g~~dg~i~i~d~~~~~~  219 (267)
                      +++|+.+++-+.++.|++||+.+.+.
T Consensus       867 d~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        867 GENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             eCCCCEEEEECCCCEEEEEECCCCcc
Confidence            99999888888899999999876543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.03  E-value=2.5e-07  Score=75.45  Aligned_cols=224  Identities=15%  Similarity=0.176  Sum_probs=138.5

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCC--CcccccccCCe--eeEEEE-EEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN--LPVSRMLSGHK--GYVSCC-QYVPDEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~--~~~~~~~~~h~--~~v~~~-~~~~~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      ..+.||+.++- ..-|.|.+||.+...-....  +|+.+.-+..+  .+..-+ .|++.++.+++..|.. ...|.+...
T Consensus       273 ~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-kaFi~~~~~  350 (668)
T COG4946         273 NANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-KAFIMRPWD  350 (668)
T ss_pred             ccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-cEEEECCCC
Confidence            35678877665 34567999987653211111  12221111111  111111 1444445566666543 444444433


Q ss_pred             CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451           79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  157 (267)
                      +..+.       .++...|.-..+..... -++.|..|| .+-|+|.+..  ..+.+...-+.|.++..+|+|++++.+-
T Consensus       351 ~~~iq-------v~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~av~vs~dGK~~vvaN  420 (668)
T COG4946         351 GYSIQ-------VGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIEAVKVSPDGKKVVVAN  420 (668)
T ss_pred             CeeEE-------cCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCc--eEEEeeCCccceEEEEEcCCCcEEEEEc
Confidence            33222       24555566555553333 567888888 8999998642  3455555667899999999999999988


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC----eEEEEeCCccceeeecccccCCccce
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----DCYVWDTLLAKVVLNLGSLQNSHEGR  233 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~  233 (267)
                      ....+.+.|+++++....-     .++.+-|+...|+|+++++|=+.-+|    .|++||+..++......  +..|.  
T Consensus       421 dr~el~vididngnv~~id-----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~D--  491 (668)
T COG4946         421 DRFELWVIDIDNGNVRLID-----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYD--  491 (668)
T ss_pred             CceEEEEEEecCCCeeEec-----ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--Ccccc--
Confidence            8889999999998754322     22334689999999999999876655    78999998776553221  12222  


Q ss_pred             EEEEEECCCCCeEEEe
Q 024451          234 ITCLGLSADGSALCTG  249 (267)
Q Consensus       234 v~~~~~~p~~~~l~sg  249 (267)
                       .+-+|.|++++|.--
T Consensus       492 -fsPaFD~d~ryLYfL  506 (668)
T COG4946         492 -FSPAFDPDGRYLYFL  506 (668)
T ss_pred             -cCcccCCCCcEEEEE
Confidence             567899999987543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.02  E-value=3.3e-06  Score=66.73  Aligned_cols=251  Identities=13%  Similarity=0.165  Sum_probs=144.7

Q ss_pred             eeeCCCCCeEEEccC---CCeEEEeecCCCCCCCCCCcc--cccccCCeeeEEEEEEecCCCeeEEEeeC-CCeEEEEeC
Q 024451            3 CAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPV--SRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDI   76 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~---d~~v~~w~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d~~v~iwd~   76 (267)
                      ++|+|+.++|.++-.   +|.+.-|..+..+   +.+..  .....++.  -.-++.++++ ++++++.. -+.|.++.+
T Consensus        45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~---G~Lt~ln~~~~~g~~--p~yvsvd~~g-~~vf~AnY~~g~v~v~p~  118 (346)
T COG2706          45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD---GRLTFLNRQTLPGSP--PCYVSVDEDG-RFVFVANYHSGSVSVYPL  118 (346)
T ss_pred             EEECCCCCEEEEEEecCCcCcEEEEEEcCCC---CeEEEeeccccCCCC--CeEEEECCCC-CEEEEEEccCceEEEEEc
Confidence            578999988887654   5778888876531   11111  11222322  1446777765 57777765 488999988


Q ss_pred             CC-CeeE---EEeCCccccCC----ccceEEEEEeCCCCeEEEEec-CCCeEEEEeCCCcccc---eEEeeccccceeEE
Q 024451           77 TT-GLRT---SVFGGEFQSGH----TADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRA---VRTFHGHEGDVNTV  144 (267)
Q Consensus        77 ~~-~~~~---~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~s~~-~d~~i~iwd~~~~~~~---~~~~~~~~~~i~~~  144 (267)
                      +. +...   .........+|    ..-+....+.|. ++++++.+ .-..|.+|++..+...   ...+ .....-.-+
T Consensus       119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi  196 (346)
T COG2706         119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD-GRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHI  196 (346)
T ss_pred             ccCCccccceeeeecCCCCCCccccCCccceeeeCCC-CCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceE
Confidence            65 3211   11110000011    112666777764 45555543 2336889988733211   1112 233456789


Q ss_pred             EEecCCCEEEEeeC-CCcEEEEeCCCC-eeeEEEEee----cCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCcc
Q 024451          145 KFFPDGNRFGTGSD-DGTCRLFDIRTG-HQLQVYYQQ----HGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLA  217 (267)
Q Consensus       145 ~~~~~~~~l~~~~~-d~~i~iwd~~~~-~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~  217 (267)
                      .|+|++++.....+ +++|.+|..... .....+...    ..........++..+++|++|.++.. ...|.+|.+...
T Consensus       197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            99999999877774 889999998773 222222111    11122335678899999999998853 236777765432


Q ss_pred             ceeeecccccCCccceEEEEEECCCCCeEEEeECC-CcEEEEecC
Q 024451          218 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TNLKIWAFG  261 (267)
Q Consensus       218 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-g~i~~w~~~  261 (267)
                      .....+......+...=....|+|+|++|+.+.+| ..|.+|..+
T Consensus       277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            21112222222333334667889999999887774 468888764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.01  E-value=3.4e-07  Score=75.13  Aligned_cols=236  Identities=22%  Similarity=0.313  Sum_probs=144.5

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC--------------
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--------------   68 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--------------   68 (267)
                      .+|+|-|++|++....+ |.+|......      .+.+.  .| ..|+-+.|+|.+ .+|.+-+..              
T Consensus        38 ~~~SP~G~~l~~~~~~~-V~~~~g~~~~------~l~~~--~~-~~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~  106 (561)
T COG5354          38 VSESPLGTYLFSEHAAG-VECWGGPSKA------KLVRF--RH-PDVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTS  106 (561)
T ss_pred             eeecCcchheehhhccc-eEEccccchh------heeee--ec-CCceecccCccc-ceeeeeccCCccChhhccCCccc
Confidence            46899999999999886 8899765321      12221  12 447788899864 588776653              


Q ss_pred             -CeEEEEeCCCCeeEEEeCCcccc--------------------C-----C---------------ccceEEEEEeCC-C
Q 024451           69 -QTCVLWDITTGLRTSVFGGEFQS--------------------G-----H---------------TADVLSVSISGS-N  106 (267)
Q Consensus        69 -~~v~iwd~~~~~~~~~~~~~~~~--------------------~-----~---------------~~~i~~~~~~~~-~  106 (267)
                       +.+.+||..++.-+..+....+.                    +     |               ...+....++|. +
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n  186 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGN  186 (561)
T ss_pred             cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCC
Confidence             34999999988655443321100                    0     0               123444555554 2


Q ss_pred             CeEEEE-----ecCCCeEEEEeCCCccc---------------------------------------------------c
Q 024451          107 SRMFVS-----GSCDSTARLWDTRVASR---------------------------------------------------A  130 (267)
Q Consensus       107 ~~~~~s-----~~~d~~i~iwd~~~~~~---------------------------------------------------~  130 (267)
                      ...++.     .+.++.+++|.+.....                                                   .
T Consensus       187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~  266 (561)
T COG5354         187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS  266 (561)
T ss_pred             CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence            222332     45667777776532100                                                   0


Q ss_pred             eEEeeccccceeEEEEecCCCEEEEee--CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE---e
Q 024451          131 VRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---S  205 (267)
Q Consensus       131 ~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~  205 (267)
                      +.....-.++|+...|.|.++.|++.+  .+-.+.++|++..  +..+..+.      .-..+.|+|.+++++.++   .
T Consensus       267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~------~rNT~~fsp~~r~il~agF~nl  338 (561)
T COG5354         267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQ------KRNTIFFSPHERYILFAGFDNL  338 (561)
T ss_pred             cceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCc------ccccccccCcccEEEEecCCcc
Confidence            001112356789999999888776654  7888999999864  22222111      235667999999887743   3


Q ss_pred             CCeEEEEeCCccceee-ecccccCCccceEEEEEECCCCCeEEEeEC------CCcEEEEecCce
Q 024451          206 NGDCYVWDTLLAKVVL-NLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKIWAFGGY  263 (267)
Q Consensus       206 dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~------dg~i~~w~~~~~  263 (267)
                      .|.+-+||........ .+.      .....-+.|+|+++++.+...      |..|+||++.|.
T Consensus       339 ~gni~i~~~~~rf~~~~~~~------~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         339 QGNIEIFDPAGRFKVAGAFN------GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             ccceEEeccCCceEEEEEee------cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            4899999976544332 221      112344689999999876543      888999998764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.01  E-value=2.9e-06  Score=67.03  Aligned_cols=232  Identities=19%  Similarity=0.275  Sum_probs=138.8

Q ss_pred             CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC---CCeEEEEeCCC--CeeEEEeCCccccC
Q 024451           18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---DQTCVLWDITT--GLRTSVFGGEFQSG   92 (267)
Q Consensus        18 d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---d~~v~iwd~~~--~~~~~~~~~~~~~~   92 (267)
                      +.-|.+|++....   +.+.... +-.+.+..+-+.|+|+. +.|.++-.   ++.|-.|.++.  +... .+......+
T Consensus        15 s~gI~v~~ld~~~---g~l~~~~-~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~ln~~~~~g   88 (346)
T COG2706          15 SQGIYVFNLDTKT---GELSLLQ-LVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLT-FLNRQTLPG   88 (346)
T ss_pred             CCceEEEEEeCcc---cccchhh-hccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEE-EeeccccCC
Confidence            5679999998533   2222222 22455667778999865 45666544   46677776653  4322 222222222


Q ss_pred             CccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc--eEEeeccccc----------eeEEEEecCCCEEEEee--C
Q 024451           93 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--VRTFHGHEGD----------VNTVKFFPDGNRFGTGS--D  158 (267)
Q Consensus        93 ~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~----------i~~~~~~~~~~~l~~~~--~  158 (267)
                      +  ....+++++....++.+.-.-|.|.++.++.....  ..+...|.+.          ++...+.|+++++++..  .
T Consensus        89 ~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~  166 (346)
T COG2706          89 S--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT  166 (346)
T ss_pred             C--CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC
Confidence            2  22677788654444444445678999987643322  1122335444          89999999999988774  4


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCcc----ceeeecccccCCc--c
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLA----KVVLNLGSLQNSH--E  231 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~----~~~~~~~~~~~~~--~  231 (267)
                      | .|.+|++..++.........  ........+.|+|++++...-. -++.|-+|.....    +.+.....++...  .
T Consensus       167 D-ri~~y~~~dg~L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~  243 (346)
T COG2706         167 D-RIFLYDLDDGKLTPADPAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT  243 (346)
T ss_pred             c-eEEEEEcccCcccccccccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence            4 79999998765432111111  2223468999999999987665 5889999986542    2222222333332  3


Q ss_pred             ceEEEEEECCCCCeEEEeEC-CCcEEEEec
Q 024451          232 GRITCLGLSADGSALCTGSW-DTNLKIWAF  260 (267)
Q Consensus       232 ~~v~~~~~~p~~~~l~sgs~-dg~i~~w~~  260 (267)
                      ....++.++|||++|..+-+ ...|.+|.+
T Consensus       244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V  273 (346)
T COG2706         244 NWAAAIHISPDGRFLYASNRGHDSIAVFSV  273 (346)
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence            34667888999999986543 235666655

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.00  E-value=2.6e-07  Score=70.06  Aligned_cols=192  Identities=15%  Similarity=0.079  Sum_probs=120.9

Q ss_pred             eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccce---EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec
Q 024451           60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV---LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG  136 (267)
Q Consensus        60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~  136 (267)
                      .+|+.|+.-|...+|...+...-..+.    ..|...|   ...+..   ..-+..++.|.++++.++.-... .  ...
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~c----d~snn~v~~~~r~cd~---~~~~~i~sndht~k~~~~~~~s~-~--~~~  154 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQC----DVSNNDVTLVKRYCDL---KFPLNIASNDHTGKTMVVSGDSN-K--FAV  154 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeee----cccccchhhhhhhccc---ccceeeccCCcceeEEEEecCcc-c--cee
Confidence            578999999999999987643211111    1121111   111111   12345678888999888753221 1  122


Q ss_pred             ccc--ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451          137 HEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  214 (267)
Q Consensus       137 ~~~--~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~  214 (267)
                      |..  ...++.++++++++++.+....|-.|.+........-.... ... ..--+..|+.....+|+++.||.+.|||+
T Consensus       155 h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a-~t~-D~gF~~S~s~~~~~FAv~~Qdg~~~I~DV  232 (344)
T KOG4532|consen  155 HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA-PTS-DHGFYNSFSENDLQFAVVFQDGTCAIYDV  232 (344)
T ss_pred             eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec-ccC-CCceeeeeccCcceEEEEecCCcEEEEEe
Confidence            433  37899999999999999999999999987654322111111 111 12357789999999999999999999998


Q ss_pred             Cccceeeecc-cccCCccceEEEEEECCCCC--eEEEeECCCcEEEEecCce
Q 024451          215 LLAKVVLNLG-SLQNSHEGRITCLGLSADGS--ALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       215 ~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~--~l~sgs~dg~i~~w~~~~~  263 (267)
                      +....+.... .....|.+.+..+.|+|.|.  +|.-.-.=+.+.+-|+..+
T Consensus       233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~  284 (344)
T KOG4532|consen  233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY  284 (344)
T ss_pred             cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence            7655443221 22345899999999998654  2333333455666665443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.99  E-value=3.8e-10  Score=97.74  Aligned_cols=201  Identities=19%  Similarity=0.350  Sum_probs=137.1

Q ss_pred             ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451           38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  117 (267)
Q Consensus        38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~  117 (267)
                      .-+.+..|+..-+|++|+.. +++|+.|+..|.|+++++.+|.....     .++|...++.+..+-...-++.+++...
T Consensus      1093 ~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s-----~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEES-----VNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred             cchhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCcccccc-----ccccccccccccccCCcceeeeeccccC
Confidence            34567889999999999984 57999999999999999999865433     3679999988877654444444444443


Q ss_pred             -eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC
Q 024451          118 -TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS  196 (267)
Q Consensus       118 -~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  196 (267)
                       ...+|+..........+.    .-.++.|+.....-+.|..-....+||+.++..+..++.....+.. .-....|+|+
T Consensus      1167 PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y-~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY-SNNLAHFSPC 1241 (1516)
T ss_pred             chHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh-hccccccCCC
Confidence             567898764333343343    3567888765444444555568899999998877664432222211 2367789999


Q ss_pred             CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          197 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       197 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      ...++   .||  .+||.+....+..+..+...     -.-.|+|+|..++.-|     -|||+..++
T Consensus      1242 D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~-----~~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1242 DTLIL---NDG--VLWDVRIPEAIHRFDQFTDY-----GGGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred             cceEe---eCc--eeeeeccHHHHhhhhhheec-----ccccccCCCceEEeec-----hhhhhHHHH
Confidence            98887   677  46999887766655433211     1235899999988776     488876654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.98  E-value=2.2e-07  Score=85.02  Aligned_cols=235  Identities=14%  Similarity=0.146  Sum_probs=131.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++.|.++...++.+..+|.|-+...+... ......+..   .-...|.|++|+|+++ .|+..+.++++.+.... -..
T Consensus        80 s~~yl~d~~~l~~~~~~Gdi~~~~~~~~~-~~~~~E~VG---~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~-fd~  153 (928)
T PF04762_consen   80 SFQYLADSESLCIALASGDIILVREDPDP-DEDEIEIVG---SVDSGILAASWSPDEE-LLALVTGEGNLLLMTRD-FDP  153 (928)
T ss_pred             EEEeccCCCcEEEEECCceEEEEEccCCC-CCceeEEEE---EEcCcEEEEEECCCcC-EEEEEeCCCEEEEEecc-ceE
Confidence            45677888888889999999988433211 111122222   2346799999999864 67778888888766432 111


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEE-------------EEeCCCcccceEEeeccccceeEEEEec
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR-------------LWDTRVASRAVRTFHGHEGDVNTVKFFP  148 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~-------------iwd~~~~~~~~~~~~~~~~~i~~~~~~~  148 (267)
                      +......          .-.   ......++.|+.++=.             .-|..........+. +...-..++|..
T Consensus       154 i~E~~l~----------~~~---~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG  219 (928)
T PF04762_consen  154 ISEVPLD----------SDD---FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG  219 (928)
T ss_pred             EEEeecC----------ccc---cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC
Confidence            1111100          000   0111223333322100             001000000011122 334557899999


Q ss_pred             CCCEEEEeeC----C--CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe---CCeEEEEeCCccce
Q 024451          149 DGNRFGTGSD----D--GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---NGDCYVWDTLLAKV  219 (267)
Q Consensus       149 ~~~~l~~~~~----d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~i~d~~~~~~  219 (267)
                      ||++||+.+-    +  +.+|||+-+ |.. ...- +   ...+--.+++|-|.|++||+.-.   ...|.+|.....+ 
T Consensus       220 DG~yFAVss~~~~~~~~R~iRVy~Re-G~L-~stS-E---~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr-  292 (928)
T PF04762_consen  220 DGEYFAVSSVEPETGSRRVIRVYSRE-GEL-QSTS-E---PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR-  292 (928)
T ss_pred             CCcEEEEEEEEcCCCceeEEEEECCC-ceE-Eecc-c---cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE-
Confidence            9999998763    2  579999864 432 2111 1   11112357899999999998764   3567777632211 


Q ss_pred             eeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          220 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       220 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      ...+..........|..++|++|+..||.--.|. |.+|..++.+
T Consensus       293 hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  293 HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence            1111111123456899999999999999977655 9999877654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.98  E-value=2.1e-08  Score=77.41  Aligned_cols=214  Identities=16%  Similarity=0.208  Sum_probs=133.4

Q ss_pred             eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-EEEeCCccccC------------CccceEEEEEeCC-CCeEEE
Q 024451           46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSG------------HTADVLSVSISGS-NSRMFV  111 (267)
Q Consensus        46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~------------~~~~i~~~~~~~~-~~~~~~  111 (267)
                      ...|++|.|...+ .++++|...|.|.++.-+...- ...+-.++ ++            -...|+.+.|..+ +...++
T Consensus        26 ad~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          26 ADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             cceeeEEEecccc-ceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            4568899997754 5899998889999997654321 01010011 11            2345677777643 334677


Q ss_pred             EecCCCeEEEEeCCCc------------------c-----------------------cceEEe-eccccceeEEEEecC
Q 024451          112 SGSCDSTARLWDTRVA------------------S-----------------------RAVRTF-HGHEGDVNTVKFFPD  149 (267)
Q Consensus       112 s~~~d~~i~iwd~~~~------------------~-----------------------~~~~~~-~~~~~~i~~~~~~~~  149 (267)
                      ..+.|.+|++|.+...                  .                       ++.+.+ .+|..-|+++.|..+
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence            7889999999976421                  0                       011222 456667889999888


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCeeeEEEEe--ecCCC-CCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceeeeccc
Q 024451          150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQ--QHGEN-EIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGS  225 (267)
Q Consensus       150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~-~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~  225 (267)
                      ...+++ ..|-.|.+|+++.......+..  ++... -..-|++..|+|... .+.-.++.|.|++-|+++.....+...
T Consensus       184 ~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         184 KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            777765 5678999999865432222211  11111 112467888998754 455567889999999875433221110


Q ss_pred             ------ccCC------ccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          226 ------LQNS------HEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       226 ------~~~~------~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                            .+..      -.+.|..+.|+|+|+|+++-+. -+++|||.+.-
T Consensus       263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~  311 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA  311 (460)
T ss_pred             hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence                  0011      1246788999999999998765 58999997654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=3.9e-09  Score=82.37  Aligned_cols=178  Identities=13%  Similarity=0.193  Sum_probs=115.2

Q ss_pred             EEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc---
Q 024451           52 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---  128 (267)
Q Consensus        52 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~---  128 (267)
                      |+|+-....+-++.+.+..|-+-|++++.....       ..+.+|.++.|.. .+.++..|+.+|.|...|++...   
T Consensus       217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qsf-------~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~  288 (425)
T KOG2695|consen  217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQSF-------QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGN  288 (425)
T ss_pred             hhhhhccceeeecccccceeEEEEeeccccccc-------ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCC
Confidence            344432223346677777788888887743221       2456777777774 35688899999999999998541   


Q ss_pred             cceEEeeccccceeEEEEec-CCCEEEEeeCCCcEEEEeCCCCee---eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451          129 RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  204 (267)
Q Consensus       129 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~  204 (267)
                      .-..+-.-|...|+++..-. ++.+|++.+.+|+|++||++..++   +..+..+..  ...+ .-+-..+....+++++
T Consensus       289 ~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN--~~a~-l~~~v~~eeg~I~s~G  365 (425)
T KOG2695|consen  289 GWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN--LSAY-LPAHVKEEEGSIFSVG  365 (425)
T ss_pred             CcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc--cccc-cccccccccceEEEcc
Confidence            11122223788888887766 678899999999999999988776   333322211  1111 1223456778899999


Q ss_pred             eCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          205 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       205 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      .|-..+||.+..+..+.........-+..+.+++|.
T Consensus       366 dDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  366 DDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             CeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            999999999987766554433222223356666664

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=2e-09  Score=83.90  Aligned_cols=153  Identities=16%  Similarity=0.201  Sum_probs=107.7

Q ss_pred             EEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccC
Q 024451           13 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG   92 (267)
Q Consensus        13 ~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~   92 (267)
                      ++.|-+-.+-+-|++..        ....+. .++.|++.+|... +++++.|+..|.|...|+++..+-....... ..
T Consensus       228 fs~G~sqqv~L~nvetg--------~~qsf~-sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-ly  296 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETG--------HQQSFQ-SKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LY  296 (425)
T ss_pred             ecccccceeEEEEeecc--------cccccc-cchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCCCcceEE-EE
Confidence            56666777778777652        222232 5677888899875 4688999999999999998652100000000 13


Q ss_pred             CccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc--ceEEeeccccceeE--EEEecCCCEEEEeeCCCcEEEEeCC
Q 024451           93 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNT--VKFFPDGNRFGTGSDDGTCRLFDIR  168 (267)
Q Consensus        93 ~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d~~i~iwd~~  168 (267)
                      |...++++.....+++.+++.+.+|+|++||.+....  .+.++.||...-.-  +-.++....++++++|-..|||.++
T Consensus       297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence            7888888877755677888999999999999985432  37788888654332  3345666788889999999999999


Q ss_pred             CCeeeEEE
Q 024451          169 TGHQLQVY  176 (267)
Q Consensus       169 ~~~~~~~~  176 (267)
                      .+..+..+
T Consensus       377 ~ghLl~ti  384 (425)
T KOG2695|consen  377 SGHLLCTI  384 (425)
T ss_pred             cCceeecc
Confidence            98766544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=2.7e-06  Score=71.62  Aligned_cols=194  Identities=16%  Similarity=0.169  Sum_probs=115.9

Q ss_pred             eEEEEEEecCCCeeEEEeeC---CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--eEEEE
Q 024451           48 YVSCCQYVPDEDTHLITSSG---DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLW  122 (267)
Q Consensus        48 ~v~~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--~i~iw  122 (267)
                      .+..-.|+|++...++..+.   +..|.++|+.+++......      .........|+|.+.+++++.+.++  .|.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  262 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY  262 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec------CCCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence            56778999987643443333   3568899998887655432      1223445668876666666655454  56677


Q ss_pred             eCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-CC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451          123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  199 (267)
Q Consensus       123 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  199 (267)
                      |+...  ..+.+..+........|+|+|+.++-.+. .+  .|.+.|+.+++.......  ..    .  ...|+|+|+.
T Consensus       263 dl~~g--~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~----~--~~~~SPDG~~  332 (419)
T PRK04043        263 DTNTK--TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK----N--NSSVSTYKNY  332 (419)
T ss_pred             ECCCC--cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC----c--CceECCCCCE
Confidence            76532  23444333333345689999987776553 33  577778876654332211  11    1  2379999998


Q ss_pred             EEEEEeC---------CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC-Cc--EEEEecCce
Q 024451          200 LFAGYSN---------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TN--LKIWAFGGY  263 (267)
Q Consensus       200 l~~g~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-g~--i~~w~~~~~  263 (267)
                      ++.....         ..|++.|+..++... +.   . . +......|+|||+.++-.+.+ +.  +.+.+++|.
T Consensus       333 Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT---~-~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        333 IVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LT---A-N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CC---C-C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            8776543         368888876654322 21   1 1 122357899999988765543 33  444466553

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.90  E-value=7.5e-09  Score=56.16  Aligned_cols=37  Identities=49%  Similarity=0.942  Sum_probs=34.9

Q ss_pred             ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451          130 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  166 (267)
Q Consensus       130 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  166 (267)
                      ++..+.+|.+.|.+++|+|++++|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4677889999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.86  E-value=2e-06  Score=66.02  Aligned_cols=198  Identities=14%  Similarity=0.200  Sum_probs=105.2

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccccc-CCeeeEEEEEEecCC-----CeeEEEeeCCCeEEEEeC
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDI   76 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~-----~~~l~s~~~d~~v~iwd~   76 (267)
                      ++|+||+.+||.+...|+|++||+....-  ...+...... .-...|..+.|.+..     ...|+.-..+|.++-|-+
T Consensus        49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~l--f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v  126 (282)
T PF15492_consen   49 LAWSPDCTLLAYAESTGTIRVFDLMGSEL--FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV  126 (282)
T ss_pred             EEECCCCcEEEEEcCCCeEEEEeccccee--EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence            68999999999999999999999875210  0011111111 123455556665322     123556667788877765


Q ss_pred             CCC-----eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC-CCeEEEEeCCCcccceEEeeccccceeEEEE---e
Q 024451           77 TTG-----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFHGHEGDVNTVKF---F  147 (267)
Q Consensus        77 ~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~---~  147 (267)
                      ..+     .....+  .+...+...|.++.+++.+. +|+.||. ...-..+.            +....+++-..   .
T Consensus       127 s~gt~q~y~e~hsf--sf~~~yp~Gi~~~vy~p~h~-LLlVgG~~~~~~~~s~------------a~~~GLtaWRiL~~~  191 (282)
T PF15492_consen  127 SVGTNQGYQENHSF--SFSSHYPHGINSAVYHPKHR-LLLVGGCEQNQDGMSK------------ASSCGLTAWRILSDS  191 (282)
T ss_pred             EcccCCcceeeEEE--EecccCCCceeEEEEcCCCC-EEEEeccCCCCCcccc------------ccccCceEEEEcCCC
Confidence            321     111122  12233456788999997654 5555543 32211110            01111222111   1


Q ss_pred             cCCCEEEEeeCCCc------EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee
Q 024451          148 PDGNRFGTGSDDGT------CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL  221 (267)
Q Consensus       148 ~~~~~l~~~~~d~~------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~  221 (267)
                      |..+. ++..+|+.      ..+|.+-+.+    ++... ..+...|..++.||+|+.|++...+|.|.+|++...+...
T Consensus       192 Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~----~fs~~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~  265 (282)
T PF15492_consen  192 PYYKQ-VTSSEDDITASSKRRGLLRIPSFK----FFSRQ-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR  265 (282)
T ss_pred             CcEEE-ccccCccccccccccceeecccee----eeecc-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence            22121 12222211      1223222111    11111 1234579999999999999999999999999987665544


Q ss_pred             ec
Q 024451          222 NL  223 (267)
Q Consensus       222 ~~  223 (267)
                      ..
T Consensus       266 ~W  267 (282)
T PF15492_consen  266 SW  267 (282)
T ss_pred             cc
Confidence            33

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.84  E-value=8.8e-06  Score=66.72  Aligned_cols=193  Identities=16%  Similarity=0.162  Sum_probs=125.0

Q ss_pred             ecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC-ccccCCc--cce---EEEE-EeCCCCeEEEEecCCCeEEEEeCCCc
Q 024451           55 VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG-EFQSGHT--ADV---LSVS-ISGSNSRMFVSGSCDSTARLWDTRVA  127 (267)
Q Consensus        55 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~~--~~i---~~~~-~~~~~~~~~~s~~~d~~i~iwd~~~~  127 (267)
                      +.++.+.+++  ..|.|.+||.++......--+ ......+  ..+   .-+. ++..++.+++..+. |+.-+.+.-. 
T Consensus       275 nsDGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~-  350 (668)
T COG4946         275 NSDGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD-  350 (668)
T ss_pred             CCCCcEEEEe--cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC-
Confidence            3455554544  456699999887643322111 1100000  000   0111 33345556666665 3455554321 


Q ss_pred             ccceEEeeccccceeEEEEecCCCEEEEeeCCC-cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC
Q 024451          128 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  206 (267)
Q Consensus       128 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d  206 (267)
                      .. .- ..+|.+.|.-..+.-+++-++.|..|| .+-|+|.++++....      ....+.|.++..+++|.+++++...
T Consensus       351 ~~-~i-qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~------e~~lg~I~av~vs~dGK~~vvaNdr  422 (668)
T COG4946         351 GY-SI-QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI------EKDLGNIEAVKVSPDGKKVVVANDR  422 (668)
T ss_pred             Ce-eE-EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe------eCCccceEEEEEcCCCcEEEEEcCc
Confidence            21 22 235677788777777778899999999 999999988764322      1233568999999999999999999


Q ss_pred             CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC----cEEEEecCce
Q 024451          207 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT----NLKIWAFGGY  263 (267)
Q Consensus       207 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg----~i~~w~~~~~  263 (267)
                      .++.++|+.++....    +.+.-.+-|+...|+|+++++|=+--+|    .|+++++.+.
T Consensus       423 ~el~vididngnv~~----idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         423 FELWVIDIDNGNVRL----IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             eEEEEEEecCCCeeE----ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence            999999998876532    2244567899999999999999776665    5899998764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=1.7e-06  Score=71.94  Aligned_cols=115  Identities=23%  Similarity=0.358  Sum_probs=75.2

Q ss_pred             ceeEEEEecCCCEEEEeeC---CCcEEEEeCCCC-eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE---eCCeEEEE
Q 024451          140 DVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVW  212 (267)
Q Consensus       140 ~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~i~  212 (267)
                      .|...+|-|.|+.|++-+.   ..++++|.+++. ...... .   .........+-|+|.|++++++.   ..|.+.++
T Consensus       447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV-k---~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~  522 (698)
T KOG2314|consen  447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV-K---ELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFY  522 (698)
T ss_pred             heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh-h---hhcccccceEEEcCCCcEEEEEEecccccceEEE
Confidence            4566788999988876553   357888888742 211111 1   11123467899999999998764   57899999


Q ss_pred             eCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC------CCcEEEEecCc
Q 024451          213 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKIWAFGG  262 (267)
Q Consensus       213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~------dg~i~~w~~~~  262 (267)
                      |+..... ..+..  ..|. ..+.+.|.|.|+|++++|.      |.--+||.|-|
T Consensus       523 D~~~a~~-k~~~~--~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  523 DTDYADL-KDTAS--PEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             ecchhhh-hhccC--cccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            9764211 11111  2343 3567999999999999886      45567787755

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=2.4e-06  Score=71.05  Aligned_cols=180  Identities=17%  Similarity=0.221  Sum_probs=115.4

Q ss_pred             ccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC--CC---------eEEEEeCCCCeeEE
Q 024451           15 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG--DQ---------TCVLWDITTGLRTS   83 (267)
Q Consensus        15 ~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--d~---------~v~iwd~~~~~~~~   83 (267)
                      .|+=+.|++|.+.... ..... ..+++- ..+.| .+.|++-+..+|+.++.  |+         ++.+.+++......
T Consensus       190 kGaPa~vri~~~~~~~-~~~~~-a~ksFF-kadkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V  265 (566)
T KOG2315|consen  190 KGAPASVRIYKYPEEG-QHQPV-ANKSFF-KADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV  265 (566)
T ss_pred             CCCCcEEEEecccccc-ccchh-hhcccc-cccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence            6777889999876321 11111 111111 11222 35677766655554443  33         46666665222221


Q ss_pred             EeCCccccCCccceEEEEEeCCCCeEE-EEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC---
Q 024451           84 VFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---  159 (267)
Q Consensus        84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---  159 (267)
                      .      ....++|.++.|+++...+. +.|-+-..+.|+|++.  .++..+  .+++=+++-|+|.|++++.+|-+   
T Consensus       266 ~------L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~--~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~  335 (566)
T KOG2315|consen  266 P------LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG--KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLP  335 (566)
T ss_pred             e------cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC--CEeEeC--CCCCccceEECCCCCEEEEeecCCCC
Confidence            1      23578999999998654443 3456778899999873  445444  35677899999999999888754   


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe------CCeEEEEeCC
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTL  215 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~------dg~i~i~d~~  215 (267)
                      |.+.|||..+.+++..+.       ....+-+.|+|+|+++++++.      |+.++||+..
T Consensus       336 G~mEvwDv~n~K~i~~~~-------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  336 GDMEVWDVPNRKLIAKFK-------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CceEEEeccchhhccccc-------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            789999998865544321       223467789999999999875      6789999963

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.81  E-value=1.2e-07  Score=75.45  Aligned_cols=102  Identities=16%  Similarity=0.194  Sum_probs=75.9

Q ss_pred             ecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEE
Q 024451          113 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA  192 (267)
Q Consensus       113 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  192 (267)
                      ++....+.+|....  .....+.||...+..++++||.++++++..|..||+-.......+..+.    -++...|+.++
T Consensus       128 agD~~~~di~s~~~--~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc----lGH~eFVS~is  201 (390)
T KOG3914|consen  128 AGDVYSFDILSADS--GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC----LGHKEFVSTIS  201 (390)
T ss_pred             cCCceeeeeecccc--cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc----cccHhheeeee
Confidence            34445566776542  3455667999999999999999999999999999997765444443332    23445788888


Q ss_pred             EccCCCEEEEEEeCCeEEEEeCCccceee
Q 024451          193 FSISGRLLFAGYSNGDCYVWDTLLAKVVL  221 (267)
Q Consensus       193 ~s~~~~~l~~g~~dg~i~i~d~~~~~~~~  221 (267)
                      .-++ ..|++|+.|++|++||..+++.+.
T Consensus       202 l~~~-~~LlS~sGD~tlr~Wd~~sgk~L~  229 (390)
T KOG3914|consen  202 LTDN-YLLLSGSGDKTLRLWDITSGKLLD  229 (390)
T ss_pred             eccC-ceeeecCCCCcEEEEecccCCccc
Confidence            7655 458999999999999998877653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.79  E-value=1.8e-08  Score=54.65  Aligned_cols=32  Identities=31%  Similarity=0.675  Sum_probs=30.5

Q ss_pred             CCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          228 NSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       228 ~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      ..|.++|.+++|+|++++|++|+.|+.|++|+
T Consensus         8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            47999999999999999999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.76  E-value=5e-08  Score=73.51  Aligned_cols=145  Identities=18%  Similarity=0.225  Sum_probs=90.3

Q ss_pred             eEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCEEEEee-----CCCcEEEEeCCCCeeeEEEEeecC
Q 024451          108 RMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGS-----DDGTCRLFDIRTGHQLQVYYQQHG  181 (267)
Q Consensus       108 ~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~  181 (267)
                      .-+++++.||.+-+++.+......+++. .|.+ -.+..+...++.+.++.     .-+....|+++..+.+   .....
T Consensus       102 t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~---~~~~~  177 (319)
T KOG4714|consen  102 NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL---IPSKK  177 (319)
T ss_pred             CceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccc---ccccc
Confidence            3578899999999998763211111111 1111 11222222344443332     1234556666543322   11111


Q ss_pred             CCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC-CCCeEEEeECCCcEEEEe
Q 024451          182 ENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       182 ~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~dg~i~~w~  259 (267)
                      .  ...+++++-+|..+ .+++|+.||.+-+||.+....+..   ....|+.+++.+-|+| ++..|.++++||.+--|+
T Consensus       178 ~--~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S---~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  178 A--LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS---LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             c--cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH---HHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence            1  12388888888765 567788899999999987754433   3467999999999997 678999999999999998


Q ss_pred             cC
Q 024451          260 FG  261 (267)
Q Consensus       260 ~~  261 (267)
                      -.
T Consensus       253 as  254 (319)
T KOG4714|consen  253 AS  254 (319)
T ss_pred             CC
Confidence            65

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=3.8e-07  Score=77.97  Aligned_cols=164  Identities=12%  Similarity=0.174  Sum_probs=117.1

Q ss_pred             CeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeC----------CccccCCccceEEEEEeCCCCeEEEEec
Q 024451           45 HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG----------GEFQSGHTADVLSVSISGSNSRMFVSGS  114 (267)
Q Consensus        45 h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----------~~~~~~~~~~i~~~~~~~~~~~~~~s~~  114 (267)
                      .+....|+.|+.. ..+++.|+.||.+++-.+.+...-....          .+...||+..|.-+.|+..+ +.+-|..
T Consensus        13 nnvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSD   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSD   90 (1189)
T ss_pred             CCceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccC
Confidence            4566889999985 4699999999999999887642111110          12345899999999999755 4567888


Q ss_pred             CCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEE
Q 024451          115 CDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  193 (267)
Q Consensus       115 ~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  193 (267)
                      .+|.|-+|=+-.++-....+. -..+.|.++.|..+|..+.....||.|.+=.++.+. +   +...  .+......+.|
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-I---wgKe--Lkg~~l~hv~w  164 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-I---WGKE--LKGQLLAHVLW  164 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-e---cchh--cchheccceee
Confidence            999999997643221111111 124568899999999999999999999987775432 2   2211  12233567889


Q ss_pred             ccCCCEEEEEEeCCeEEEEeCCc
Q 024451          194 SISGRLLFAGYSNGDCYVWDTLL  216 (267)
Q Consensus       194 s~~~~~l~~g~~dg~i~i~d~~~  216 (267)
                      ++|.+.++.+-.+|..++||.+.
T Consensus       165 s~D~~~~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  165 SEDLEQALFKKANGETHLYDNQG  187 (1189)
T ss_pred             cccHHHHHhhhcCCcEEEecccc
Confidence            99999999999999999999654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.75  E-value=2.1e-07  Score=81.38  Aligned_cols=181  Identities=22%  Similarity=0.277  Sum_probs=119.3

Q ss_pred             eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccc
Q 024451           61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD  140 (267)
Q Consensus        61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  140 (267)
                      .++-|+.-..+.-+|+++........     .....+.   +...+++.+.+|...|+|.+-|.+. .+.+..+.+|.+.
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~-----v~a~~v~---imR~Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~s  219 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTN-----VSASGVT---IMRYNNRNLFCGDTRGTVFLRDPNS-FETIHTFDAHSGS  219 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeee-----ccCCceE---EEEecCcEEEeecccceEEeecCCc-Cceeeeeeccccc
Confidence            45566666666677777654433321     1111232   3334668889999999999999874 5678899999999


Q ss_pred             eeEEEEecCCCEEEEeeC---------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC-CCEEEEEEeCCeEE
Q 024451          141 VNTVKFFPDGNRFGTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCY  210 (267)
Q Consensus       141 i~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~  210 (267)
                      |..++.  .|+.|++||.         |.-|+|||++.-+.+.-+.-..      ...=+.|.|. ...+++.+..|...
T Consensus       220 iSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~------~P~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  220 ISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY------GPQFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             eeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc------CchhhhhcccccceEEEEeccccee
Confidence            987776  5788888874         4569999998755432111110      1133456665 34677788899999


Q ss_pred             EEeCCcc-ceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          211 VWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       211 i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      +-|..+. .....+... ......+.+++++++|+.||.|..+|.|.+|.
T Consensus       292 ~vd~~~lsNP~~~~~~v-~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  292 FVDTATLSNPPAGVKMV-NPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eccccccCCCccceeEE-ccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            9983321 111111111 12334589999999999999999999999996

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=1.1e-05  Score=67.90  Aligned_cols=189  Identities=13%  Similarity=0.042  Sum_probs=106.0

Q ss_pred             ceeeCCCCCe-EEEccCC---CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC--CeEEEEe
Q 024451            2 TCAFSPTGQS-VACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWD   75 (267)
Q Consensus         2 ~~~~~~~g~~-l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--~~v~iwd   75 (267)
                      .-.|+|||+. ++..+.+   ..|.++|+....        .+.+....+......|+|++...+++.+.+  ..|.++|
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--------~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--------KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCc--------EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence            3579999984 6644433   456677764321        111222334455677999887766666555  4577778


Q ss_pred             CCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEE
Q 024451           76 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  153 (267)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  153 (267)
                      +.++.......      +........|+|.+.+++.+....+  .|.+.|+....  .+.+... +. ....|+|+|+.+
T Consensus       264 l~~g~~~~LT~------~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~--~~rlt~~-g~-~~~~~SPDG~~I  333 (419)
T PRK04043        264 TNTKTLTQITN------YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS--VEQVVFH-GK-NNSSVSTYKNYI  333 (419)
T ss_pred             CCCCcEEEccc------CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC--eEeCccC-CC-cCceECCCCCEE
Confidence            87765443221      1111223458876666666665555  46666665322  2222211 11 224899999988


Q ss_pred             EEeeCC---------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-C--eEEEEeCC
Q 024451          154 GTGSDD---------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-G--DCYVWDTL  215 (267)
Q Consensus       154 ~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-g--~i~i~d~~  215 (267)
                      +-.+..         ..|.+.|+.++.... +.. ..     ......|+|+|+.++..... +  .+.+.++.
T Consensus       334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~-~~-----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        334 VYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTA-NG-----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             EEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCC-CC-----CcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence            766543         257778887765422 221 11     12346799999987665543 2  35555553

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.69  E-value=7.2e-05  Score=58.58  Aligned_cols=224  Identities=17%  Similarity=0.163  Sum_probs=133.8

Q ss_pred             eeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ..|.+ +|.++.+--..+.|..|+.....      .....+.+    ...+.+...++. ++.+..++ +.++|..++..
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~------~~~~~~~~----~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~   72 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGE------VEVIDLPG----PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKV   72 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTE------EEEEESSS----EEEEEEECTTSE-EEEEETTC-EEEEETTTTEE
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCCCe------EEEEecCC----CceEEEEccCCE-EEEEEcCc-eEEEecCCCcE
Confidence            46777 78888887789999999876421      01111111    445566633344 55555544 45559888754


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC--------CeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  153 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  153 (267)
                      ................+.+++.+. ++++++....        |.|..++..  .+ ...+.......+.++|+|+++.|
T Consensus        73 ~~~~~~~~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~~~~~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   73 TVLADLPDGGVPFNRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVVADGLGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             EEEEEEETTCSCTEEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEEEEEESSEEEEEEETTSSEE
T ss_pred             EEEeeccCCCcccCCCceEEEcCC-CCEEEEecCCCccccccccceEEECCC--Ce-EEEEecCcccccceEECCcchhe
Confidence            444322111113456788888864 5677765433        456666654  22 23333334556899999999876


Q ss_pred             E-EeeCCCcEEEEeCCCCee-e---EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccC
Q 024451          154 G-TGSDDGTCRLFDIRTGHQ-L---QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN  228 (267)
Q Consensus       154 ~-~~~~d~~i~iwd~~~~~~-~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~  228 (267)
                      + +-+..+.|..+++..... +   ..+..  ........-.++++.+|++.++....+.|.++|.. ++.+..+.   .
T Consensus       149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~---~  222 (246)
T PF08450_consen  149 YVADSFNGRIWRFDLDADGGELSNRRVFID--FPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE---L  222 (246)
T ss_dssp             EEEETTTTEEEEEEEETTTCCEEEEEEEEE---SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE----
T ss_pred             eecccccceeEEEeccccccceeeeeeEEE--cCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc---C
Confidence            5 567788899999864322 1   12211  11112346789999999999998889999999976 66554432   1


Q ss_pred             CccceEEEEEE-CCCCCeEEEe
Q 024451          229 SHEGRITCLGL-SADGSALCTG  249 (267)
Q Consensus       229 ~~~~~v~~~~~-~p~~~~l~sg  249 (267)
                      . ...+++++| -|+.+.|...
T Consensus       223 p-~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  223 P-VPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             S-SSSEEEEEEESTTSSEEEEE
T ss_pred             C-CCCEEEEEEECCCCCEEEEE
Confidence            2 236889999 4776655443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.68  E-value=2.4e-07  Score=79.37  Aligned_cols=225  Identities=15%  Similarity=0.248  Sum_probs=142.5

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC--CeeEEEeeCCCeEEEEeCCCCee
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ..+|.|+-++.++.-| +.+-|+..+-.+..   ..+.+  ..-.|-.++|+|..  +..+++-+.-+ -.+|++.....
T Consensus        31 si~p~grdi~lAsr~g-l~i~dld~p~~ppr---~l~h~--tpw~vad~qws~h~a~~~wiVsts~qk-aiiwnlA~ss~  103 (1081)
T KOG0309|consen   31 SINPSGRDIVLASRQG-LYIIDLDDPFTPPR---WLHHI--TPWQVADVQWSPHPAKPYWIVSTSNQK-AIIWNLAKSSS  103 (1081)
T ss_pred             eeccccchhhhhhhcC-eEEEeccCCCCCce---eeecc--CcchhcceecccCCCCceeEEecCcch-hhhhhhhcCCc
Confidence            4678888888888776 66777766432210   11111  12345567777542  34555544444 34798864322


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ..+.  ...-+|...++.+.|++.+...+++++.|-.+..||++....++.+..........+.|+-....+.+.+..+-
T Consensus       104 ~aIe--f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~  181 (1081)
T KOG0309|consen  104 NAIE--FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND  181 (1081)
T ss_pred             cceE--EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence            1111  11247899999999998888899999999999999998776677666655667788999865444555577788


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      |++||++.+.......+.    +...+..+.|.. ....+.+.+.||.|++||.........  +. .....+|.--.+.
T Consensus       182 i~vwd~r~gs~pl~s~K~----~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~--~~-vtt~~piw~~r~~  254 (1081)
T KOG0309|consen  182 IFVWDLRKGSTPLCSLKG----HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK--RT-VTTNFPIWRGRYL  254 (1081)
T ss_pred             eEEEeccCCCcceEEecc----cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc--ee-ccccCcceecccc
Confidence            999999988766544432    223456666643 234577788999999999754332211  00 1233455555566


Q ss_pred             CCCC
Q 024451          241 ADGS  244 (267)
Q Consensus       241 p~~~  244 (267)
                      |-|+
T Consensus       255 Pfg~  258 (1081)
T KOG0309|consen  255 PFGE  258 (1081)
T ss_pred             ccCc
Confidence            6443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.66  E-value=3.8e-05  Score=59.17  Aligned_cols=236  Identities=16%  Similarity=0.140  Sum_probs=119.7

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      ++.+.+|+.||. -.|..|.+=.....- ..-..++ ..-+.-.-.=.-++|+|++ .+||.+...|+|+++|+.... .
T Consensus         3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf-~si~~kc-qVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~-l   77 (282)
T PF15492_consen    3 LALSSDGKLLAI-LQDQCIEIRSAKDDF-SSIIGKC-QVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSE-L   77 (282)
T ss_pred             eeecCCCcEEEE-EeccEEEEEeccCCc-hheeEEE-ecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccce-e
Confidence            356788887765 345556654433211 0000000 0111112223458899976 589999999999999997533 2


Q ss_pred             EEeCCcc-ccC-CccceEEEEEeCCC-----CeEEEEecCCCeEEEEeCCC--cc--c--ceEEeec-cccceeEEEEec
Q 024451           83 SVFGGEF-QSG-HTADVLSVSISGSN-----SRMFVSGSCDSTARLWDTRV--AS--R--AVRTFHG-HEGDVNTVKFFP  148 (267)
Q Consensus        83 ~~~~~~~-~~~-~~~~i~~~~~~~~~-----~~~~~s~~~d~~i~iwd~~~--~~--~--~~~~~~~-~~~~i~~~~~~~  148 (267)
                      ..++... ..+ -...|..+.|.+..     ...++.-..+|.++-+-+..  ..  .  ...++.. +...|.++.++|
T Consensus        78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p  157 (282)
T PF15492_consen   78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP  157 (282)
T ss_pred             EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence            2332111 111 12344455554332     22455556677766554311  11  1  1122322 356799999999


Q ss_pred             CCCEEEEeeCC-Cc----------EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451          149 DGNRFGTGSDD-GT----------CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  217 (267)
Q Consensus       149 ~~~~l~~~~~d-~~----------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  217 (267)
                      ..++|+.||.. ..          +.-|.+-++..              ....+. +-+...-......+   +|.+...
T Consensus       158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P--------------yyk~v~-~~~~~~~~~~~~~~---~~~~~~~  219 (282)
T PF15492_consen  158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP--------------YYKQVT-SSEDDITASSKRRG---LLRIPSF  219 (282)
T ss_pred             CCCEEEEeccCCCCCccccccccCceEEEEcCCCC--------------cEEEcc-ccCccccccccccc---eeeccce
Confidence            98888777632 21          22222221111              000000 11111111111111   2222111


Q ss_pred             ceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceEe
Q 024451          218 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR  265 (267)
Q Consensus       218 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~  265 (267)
                      +..    ..+..-...|..+..||||+.||+...+|.|.+|++-.++.
T Consensus       220 ~~f----s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  220 KFF----SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             eee----eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence            111    11122456799999999999999999999999999866653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.58  E-value=5.6e-08  Score=84.76  Aligned_cols=207  Identities=22%  Similarity=0.294  Sum_probs=132.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC-eEEEEeCCCC-
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-TCVLWDITTG-   79 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-~v~iwd~~~~-   79 (267)
                      ||+|+-+.++|+.|+-.|.|++|++....       ......+|..+|+-+..+.++...|.+++... -..+|++.+. 
T Consensus      1106 c~afs~~~~hL~vG~~~Geik~~nv~sG~-------~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1106 CIAFSGGTNHLAVGSHAGEIKIFNVSSGS-------MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred             eEEeecCCceEEeeeccceEEEEEccCcc-------ccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence            68899999999999999999999987643       34567899999999998888877676666665 4678998642 


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee---ccccceeEEEEecCCCEEEEe
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFGTG  156 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~  156 (267)
                      .....|         ..-.++.|+...... +.|..-....+||+.+......-+.   +....=+++.|+|+.+++.  
T Consensus      1179 ~~~Hsf---------~ed~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1179 GPRHSF---------DEDKAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred             Cccccc---------cccceeehhhhHHHH-HhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence            222221         122456666432222 3344445788999976443222222   2222337789999877664  


Q ss_pred             eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451          157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  236 (267)
Q Consensus       157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  236 (267)
                       .||  -+||.+..+.+..+-+ ....     -.-.|+|+|.-++.-+     -|||+++.+.+..+..+..      ..
T Consensus      1247 -ndG--vLWDvR~~~aIh~FD~-ft~~-----~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ldq------c~ 1306 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQ-FTDY-----GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLDQ------CA 1306 (1516)
T ss_pred             -eCc--eeeeeccHHHHhhhhh-heec-----ccccccCCCceEEeec-----hhhhhHHHHHHhcCccccc------eE
Confidence             344  4699987654433321 1111     1225899998888765     5899999887766543321      34


Q ss_pred             EEECCCCCeEE
Q 024451          237 LGLSADGSALC  247 (267)
Q Consensus       237 ~~~~p~~~~l~  247 (267)
                      +.|+..|..+.
T Consensus      1307 VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1307 VTFNSTGDVMY 1317 (1516)
T ss_pred             EEeccCccchh
Confidence            66776666543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.56  E-value=6.9e-05  Score=69.04  Aligned_cols=228  Identities=16%  Similarity=0.212  Sum_probs=135.9

Q ss_pred             ceeeCCCCCeEEEccC------CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC---CCeEE
Q 024451            2 TCAFSPTGQSVACGGL------DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---DQTCV   72 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~------d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---d~~v~   72 (267)
                      .++|..||.++|+.+.      -..+|||+.+...        ..+-..-.+--.+++|-|++ +++|+...   ...|.
T Consensus       214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L--------~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~Vv  284 (928)
T PF04762_consen  214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSREGEL--------QSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVV  284 (928)
T ss_pred             EEEECCCCcEEEEEEEEcCCCceeEEEEECCCceE--------EeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEE
Confidence            4789999999998775      2689999976321        11111112223467899976 56766543   34566


Q ss_pred             EEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce---EEee-ccccceeEEEEec
Q 024451           73 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV---RTFH-GHEGDVNTVKFFP  148 (267)
Q Consensus        73 iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~---~~~~-~~~~~i~~~~~~~  148 (267)
                      +|.-+ |.+-..|...+ ......+..+.|++. ..+++..-.| .|++|-..  ....   ..+. .....+..+.|+|
T Consensus       285 FfErN-GLrhgeF~l~~-~~~~~~v~~l~Wn~d-s~iLAv~~~~-~vqLWt~~--NYHWYLKqei~~~~~~~~~~~~Wdp  358 (928)
T PF04762_consen  285 FFERN-GLRHGEFTLRF-DPEEEKVIELAWNSD-SEILAVWLED-RVQLWTRS--NYHWYLKQEIRFSSSESVNFVKWDP  358 (928)
T ss_pred             EEecC-CcEeeeEecCC-CCCCceeeEEEECCC-CCEEEEEecC-CceEEEee--CCEEEEEEEEEccCCCCCCceEECC
Confidence            67643 44444444333 235667899999964 4566655544 49999754  2221   1121 1223355599999


Q ss_pred             C-CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc
Q 024451          149 D-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  227 (267)
Q Consensus       149 ~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~  227 (267)
                      . ...|...+.++.+..+++.-.    ..   ...         ..+|+..-+++.-....+.+-+.+..-.+..+....
T Consensus       359 e~p~~L~v~t~~g~~~~~~~~~~----v~---~s~---------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~  422 (928)
T PF04762_consen  359 EKPLRLHVLTSNGQYEIYDFAWD----VS---RSP---------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYE  422 (928)
T ss_pred             CCCCEEEEEecCCcEEEEEEEEE----EE---ecC---------CCCccCceEEEEEeCCeEEEecccccCCCchHhceE
Confidence            5 455777777778777765310    00   000         012233333344344566666665544444444333


Q ss_pred             CCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          228 NSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       228 ~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      -....+|.+++|++++..+|+-..||.+.+|..
T Consensus       423 l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~  455 (928)
T PF04762_consen  423 LELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW  455 (928)
T ss_pred             EcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence            345678999999999888888889999999984

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1.8e-06  Score=70.08  Aligned_cols=202  Identities=12%  Similarity=0.039  Sum_probs=131.9

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC-CCeEEEEeCCCCeeEEEeC
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFG   86 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~   86 (267)
                      -.+++.+++.||.++-|--..-.   + ......+..|.+.|.++..+.++ .++.|.+. |..+|++|+++-.-...+.
T Consensus        19 ka~fiiqASlDGh~KFWkKs~is---G-vEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiK   93 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRIS---G-VEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIK   93 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCcc---c-eeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcc
Confidence            34789999999999999643211   1 23456678899999888877654 56777676 9999999987543222222


Q ss_pred             CccccCCccceEEEEEeCCCC----eEEEEecCCCeEEEEeCCCcccce-EEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           87 GEFQSGHTADVLSVSISGSNS----RMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~~~----~~~~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ....++.      +.|....+    .+.++.-.++.+.++|-....... ..-.-|..+|..+.+.|.+..+++.-..|.
T Consensus        94 L~~lPg~------a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm  167 (558)
T KOG0882|consen   94 LVDLPGF------AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM  167 (558)
T ss_pred             cccCCCc------eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce
Confidence            2221111      11221111    233444567889999876544222 233458899999999999999999989999


Q ss_pred             EEEEeCCCC-e---eeEEEEeecC------CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee
Q 024451          162 CRLFDIRTG-H---QLQVYYQQHG------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       162 i~iwd~~~~-~---~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  220 (267)
                      |.-|..... +   ....+.-.+.      ..-.....++.|+|++..+.+-..|..|++++..+++..
T Consensus       168 VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  168 VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence            999987631 0   0000000000      001234689999999999999889999999998777654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.51  E-value=4.4e-05  Score=63.79  Aligned_cols=178  Identities=18%  Similarity=0.135  Sum_probs=101.2

Q ss_pred             eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCcc-----ce-EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe
Q 024451           61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA-----DV-LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF  134 (267)
Q Consensus        61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-----~i-~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~  134 (267)
                      .++.+..++.+..+|.+++............+...     .+ .+..+.  + ..+..++.+|.+..+|.+.... .-..
T Consensus       192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~-~~vy~~~~~g~l~a~d~~tG~~-~W~~  267 (377)
T TIGR03300       192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--G-GQVYAVSYQGRVAALDLRSGRV-LWKR  267 (377)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--C-CEEEEEEcCCEEEEEECCCCcE-EEee
Confidence            46777888999999998886554322110000000     00 011121  2 3455677789999999875432 2222


Q ss_pred             eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451          135 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  214 (267)
Q Consensus       135 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~  214 (267)
                      . .. ......  ..+..++.++.||.+..+|..+++.+.....  ..  .....+..  ..+..+++++.+|.|+++|.
T Consensus       268 ~-~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~--~~--~~~~ssp~--i~g~~l~~~~~~G~l~~~d~  337 (377)
T TIGR03300       268 D-AS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDE--LK--YRQLTAPA--VVGGYLVVGDFEGYLHWLSR  337 (377)
T ss_pred             c-cC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccc--cc--CCccccCE--EECCEEEEEeCCCEEEEEEC
Confidence            1 11 111122  2456788888999999999998875432211  01  01111111  14678899999999999999


Q ss_pred             CccceeeecccccCCccceEEE-EEECCCCCeEEEeECCCcEEEE
Q 024451          215 LLAKVVLNLGSLQNSHEGRITC-LGLSADGSALCTGSWDTNLKIW  258 (267)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~sgs~dg~i~~w  258 (267)
                      .+++.+....    .+...+.. ..+ .+ +.|..++.||.|..|
T Consensus       338 ~tG~~~~~~~----~~~~~~~~sp~~-~~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       338 EDGSFVARLK----TDGSGIASPPVV-VG-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             CCCCEEEEEE----cCCCccccCCEE-EC-CEEEEEeCCceEEEe
Confidence            8888765542    22222221 222 23 457778899988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=4.2e-06  Score=67.99  Aligned_cols=208  Identities=14%  Similarity=0.133  Sum_probs=132.4

Q ss_pred             CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC-CCeEEEE
Q 024451           44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLW  122 (267)
Q Consensus        44 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-d~~i~iw  122 (267)
                      .|++.|+.|....  ..++++++.||.++.|.-..-. ...+... ...|-..+.+++.+- ++.++.|.+. |..+|++
T Consensus         7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~is-GvEfVKh-FraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRIS-GVEFVKH-FRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             cccceeeeEeeeh--hheEEeeecchhhhhcCCCCcc-ceeehhh-hHHHHHHHHhhhccc-cceeEeeccCcccceeEE
Confidence            4888888876544  4689999999999999753211 1112111 135777777777663 4567788676 9999999


Q ss_pred             eCCCcccceEEee-ccccceeEEEEecCC--CEE-EEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC
Q 024451          123 DTRVASRAVRTFH-GHEGDVNTVKFFPDG--NRF-GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR  198 (267)
Q Consensus       123 d~~~~~~~~~~~~-~~~~~i~~~~~~~~~--~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  198 (267)
                      |+.... .+..++ ..-...-+...+|..  ..+ ++.-.++.+.++|-....+...++.   ..+..+|..+.+.+.+.
T Consensus        82 DvEn~D-minmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk---klH~sPV~~i~y~qa~D  157 (558)
T KOG0882|consen   82 DVENFD-MINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK---KLHFSPVKKIRYNQAGD  157 (558)
T ss_pred             Eeeccc-hhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec---ccccCceEEEEeecccc
Confidence            986422 111111 111112222223321  123 3345789999999876554333332   23445799999999999


Q ss_pred             EEEEEEeCCeEEEEeCCc-cc-----eeeec------ccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          199 LLFAGYSNGDCYVWDTLL-AK-----VVLNL------GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       199 ~l~~g~~dg~i~i~d~~~-~~-----~~~~~------~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .+++....|.|.-|.... .+     ...++      ... ........++.|+|+|..+.+-+.|..|+++.+-
T Consensus       158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f-~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K  231 (558)
T KOG0882|consen  158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF-PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK  231 (558)
T ss_pred             ceeeccccceeEeecCCCcccCccccccccccccchhhcc-cccccCccceEEccccCcccccCcccEEEEEEec
Confidence            999999999999998763 11     11111      011 1123456889999999999998999999999763

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.48  E-value=3.3e-05  Score=70.09  Aligned_cols=236  Identities=14%  Similarity=0.197  Sum_probs=125.7

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC----C
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT----T   78 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~----~   78 (267)
                      ..|..++..+..+...|.+.+-|....        .....-.-.+.|.+.+|+|++ +.++..+.++++.+-...    .
T Consensus        74 ~~fl~d~~~i~v~~~~G~iilvd~et~--------~~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   74 VQFLADTNSICVITALGDIILVDPETL--------ELEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             EEEecccceEEEEecCCcEEEEccccc--------ceeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchh
Confidence            456667777888888888888876541        112222335678999999976 477778888887655431    1


Q ss_pred             CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee-
Q 024451           79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-  157 (267)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  157 (267)
                      .++.   ..+  .-.......+-|-....++  -| ..|.....+.....+.......+. .=.++.|.-||++||+.. 
T Consensus       145 E~~L---~~d--~~~~sk~v~VGwGrkeTqf--rg-s~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~~  215 (1265)
T KOG1920|consen  145 EKPL---DAD--DERKSKFVNVGWGRKETQF--RG-SEGRQAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSFV  215 (1265)
T ss_pred             cccc---ccc--cccccccceecccccceee--ec-chhhhcccccccccccccchhhcc-CCceEEEccCCcEEEEEEE
Confidence            1111   000  0000111112221111111  11 111111111111111111111111 124689999999998732 


Q ss_pred             ---CC-CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE---eCCeEEEEeCCccceeeeccccc-CC
Q 024451          158 ---DD-GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQ-NS  229 (267)
Q Consensus       158 ---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~~-~~  229 (267)
                         .+ ++|++||.+ +.. ...    ......--.+++|-|.|..+++-.   +++.|.+|.....+  +.-..++ ..
T Consensus       216 ~~~~~~RkirV~drE-g~L-ns~----se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~--hg~f~l~~p~  287 (1265)
T KOG1920|consen  216 ESETGTRKIRVYDRE-GAL-NST----SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR--HGEFVLPFPL  287 (1265)
T ss_pred             eccCCceeEEEeccc-chh-hcc----cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc--ccccccCCcc
Confidence               34 899999976 321 111    111112236889999999998853   45678888742211  1100111 12


Q ss_pred             ccceEEEEEECCCCCeEEE---eECCCcEEEEecCceE
Q 024451          230 HEGRITCLGLSADGSALCT---GSWDTNLKIWAFGGYR  264 (267)
Q Consensus       230 ~~~~v~~~~~~p~~~~l~s---gs~dg~i~~w~~~~~~  264 (267)
                      ...++..++|+.++..||.   ......|++|.+++++
T Consensus       288 de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  288 DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             cccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            2344999999999999997   4444559999987765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.47  E-value=0.00031  Score=54.55  Aligned_cols=189  Identities=17%  Similarity=0.151  Sum_probs=109.3

Q ss_pred             eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecccc
Q 024451           60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG  139 (267)
Q Consensus        60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  139 (267)
                      ..+++++.++.|..||..+++....+....  .....   ...  .+++ ++.+..++.+..+|.+.+............
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--~~~~~---~~~--~~~~-v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~  108 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDLPG--PISGA---PVV--DGGR-VYVGTSDGSLYALDAKTGKVLWSIYLTSSP  108 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEECSS--CGGSG---EEE--ETTE-EEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeeccc--cccce---eee--cccc-cccccceeeeEecccCCcceeeeecccccc
Confidence            357777899999999999998766554211  11111   112  2333 445557779999997765543332222211


Q ss_pred             ---ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCc------EEEEEEccCCCEEEEEEeCCeEE
Q 024451          140 ---DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH------VTSIAFSISGRLLFAGYSNGDCY  210 (267)
Q Consensus       140 ---~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~------v~~~~~s~~~~~l~~g~~dg~i~  210 (267)
                         ..........++.++.+..++.+..+|.++++.+....... ......      +..-....++ .++.+..+|.+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~  186 (238)
T PF13360_consen  109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE-PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVV  186 (238)
T ss_dssp             TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST-T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEE
T ss_pred             ccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC-CCCCcceeeecccccceEEECC-EEEEEcCCCeEE
Confidence               11222233347888888889999999999998866543311 111111      1122222344 676777777533


Q ss_pred             EEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceEe
Q 024451          211 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR  265 (267)
Q Consensus       211 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~  265 (267)
                      -+|..+++......      ...+..+ ..+++..|+.++.++.+..||...-+.
T Consensus       187 ~~d~~tg~~~w~~~------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  187 AVDLATGEKLWSKP------ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             EEETTTTEEEEEEC------SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             EEECCCCCEEEEec------CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence            34988887553221      1112221 346778888888999999999765543

...

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.47  E-value=4e-08  Score=82.69  Aligned_cols=197  Identities=17%  Similarity=0.227  Sum_probs=122.2

Q ss_pred             CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee----CCCeEEEEeCCCCeeEEEe
Q 024451           10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS----GDQTCVLWDITTGLRTSVF   85 (267)
Q Consensus        10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----~d~~v~iwd~~~~~~~~~~   85 (267)
                      -.++.|..+|.|.+=.+..+...     -.....+|..+.++++|++-+..+||.|-    .|..+.|||+.++.....-
T Consensus        71 cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke  145 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKE  145 (783)
T ss_pred             hhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcc
Confidence            46778888999998887653322     12345678889999999987666666552    2556999999876221111


Q ss_pred             CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCCcEEE
Q 024451           86 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRL  164 (267)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i  164 (267)
                      ...+..+......+++|. .+.+++++|.....+.++|++........+  ....+..+...| .++|+++-. |+.|-+
T Consensus       146 ~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAi  221 (783)
T KOG1008|consen  146 SPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAI  221 (783)
T ss_pred             ccccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceee
Confidence            111111233345578887 567888888888899999998533222222  233456677788 677887655 999999


Q ss_pred             EeC-CCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE-EEEE-eCCeEEEEeCC
Q 024451          165 FDI-RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGY-SNGDCYVWDTL  215 (267)
Q Consensus       165 wd~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~g~-~dg~i~i~d~~  215 (267)
                      ||. +.-+.......+........+..++|.|...-+ ++.. ..+.|++||+.
T Consensus       222 wD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  222 WDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            994 321111111111111122357889999876533 3333 45799999864

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=3.9e-05  Score=66.75  Aligned_cols=179  Identities=15%  Similarity=0.166  Sum_probs=115.2

Q ss_pred             CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451            9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE   88 (267)
Q Consensus         9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   88 (267)
                      +++++-|.-+|.+++++....        . ++...|...       ..++.+++|||.||+|.|-.+.+......+.  
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~--------~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d--  110 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGN--------P-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD--  110 (846)
T ss_pred             cceeeeccccceEEEEecCCc--------c-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccceeEe--
Confidence            578899999999999987642        1 223334332       2345799999999999998887765444332  


Q ss_pred             cccCCccceEEEEEeCC----CCeEEEEecCCCeEEEEeCCCccc-ceEEeeccccceeEEEEecCCCEEEEeeCCCcEE
Q 024451           89 FQSGHTADVLSVSISGS----NSRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR  163 (267)
Q Consensus        89 ~~~~~~~~i~~~~~~~~----~~~~~~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  163 (267)
                          -..++.+++++|.    ..+++++||.-| +.++.-+-.+. ....+..-.++|.++.|.  |+++|=+. |--|+
T Consensus       111 ----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~Gv~  182 (846)
T KOG2066|consen  111 ----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDGVK  182 (846)
T ss_pred             ----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CCCcE
Confidence                3457888888875    346789999988 77776432221 112344557899999996  55666544 55799


Q ss_pred             EEeCCCCeeeEEEEeecCCCC-CCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451          164 LFDIRTGHQLQVYYQQHGENE-IPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  215 (267)
Q Consensus       164 iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~  215 (267)
                      +||+.+.+.+..+...+.... ......+.|.++ ..|+.|..| .|++...+
T Consensus       183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             EEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC-eEEEEEEe
Confidence            999988877655433322111 112346677654 456667655 45666554

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.46  E-value=6.6e-05  Score=65.31  Aligned_cols=237  Identities=18%  Similarity=0.203  Sum_probs=145.6

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC-----------CeeEEEeeCCCeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-----------DTHLITSSGDQTC   71 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~~l~s~~~d~~v   71 (267)
                      ..|+|.|- ++-|+- ..|.+-|...       ......+.-|...|+.++|.|..           ...|+++.-.|.|
T Consensus        21 ~Dw~~~GL-iAygsh-slV~VVDs~s-------~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   21 ADWSPSGL-IAYGSH-SLVSVVDSRS-------LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             cccCccce-EEEecC-ceEEEEehhh-------hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            45777665 555553 3577777653       23556677899999999997631           2356777778999


Q ss_pred             EEEeCCCCeeEEEeCCccccCCccceEEEEEeCC--CC-eEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec
Q 024451           72 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS--NS-RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP  148 (267)
Q Consensus        72 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~-~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~  148 (267)
                      .+||...+..+.-+     +.|.+.+..++|.+.  .. .+++.-.....+.+|+..++.+..+.--+| ....|+.+.|
T Consensus        92 il~d~~~~s~~~~l-----~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DP  165 (1062)
T KOG1912|consen   92 ILVDFVLASVINWL-----SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDP  165 (1062)
T ss_pred             EEEEehhhhhhhhh-----cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCC
Confidence            99999876544333     457777888887653  22 344554556689999987666544433333 3567788888


Q ss_pred             -CCCEEEEeeCCCcEEEEeCCCC-------eeeEEEEeecCC-----------C-CCC---------cEEEEEEccCCCE
Q 024451          149 -DGNRFGTGSDDGTCRLFDIRTG-------HQLQVYYQQHGE-----------N-EIP---------HVTSIAFSISGRL  199 (267)
Q Consensus       149 -~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~-----------~-~~~---------~v~~~~~s~~~~~  199 (267)
                       +..+|..-+..|.+.+-+....       +..+.. ..+..           + ...         ....++|+|.-+.
T Consensus       166 fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~-sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn  244 (1062)
T KOG1912|consen  166 FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT-SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN  244 (1062)
T ss_pred             CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe-cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence             5667766666777776664321       222111 11100           0 000         1224567887665


Q ss_pred             EEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC--CCeEEEeECCCcEEEEe
Q 024451          200 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD--GSALCTGSWDTNLKIWA  259 (267)
Q Consensus       200 l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~sgs~dg~i~~w~  259 (267)
                      ++--.-.+.+.++|++....+.... ++   .+.+.-+.+-|+  ...|.+.-.||.+.+|.
T Consensus       245 ~lfi~~prellv~dle~~~~l~vvp-ie---r~~akfv~vlP~~~rd~LfclH~nG~ltirv  302 (1062)
T KOG1912|consen  245 ILFITFPRELLVFDLEYECCLAVVP-IE---RGGAKFVDVLPDPRRDALFCLHSNGRLTIRV  302 (1062)
T ss_pred             eEEEEeccceEEEcchhhceeEEEE-ec---cCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence            5555567889999987665543331 11   122334556665  45788889999999995

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.46  E-value=8e-06  Score=71.87  Aligned_cols=183  Identities=18%  Similarity=0.294  Sum_probs=119.8

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG   87 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   87 (267)
                      ++..++-||--..+..+|+....       ..+...-..+.|+-++.   +.+++++|...|+|.+=|..+-+.+..+  
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~-------e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~--  213 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEK-------ETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTF--  213 (1118)
T ss_pred             CCcceeecchhhheeeeecccce-------eeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeee--
Confidence            34455555555556666664311       22222112223544443   4468999999999999999887777766  


Q ss_pred             ccccCCccceEEEEEeCCCCeEEEEecC---------CCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEee
Q 024451           88 EFQSGHTADVLSVSISGSNSRMFVSGSC---------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGS  157 (267)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~  157 (267)
                         ..|++.+..+++.   +++++++|.         |..|+|||+|+.+ .+..+.-+.++ .-+.|+|. ...+++++
T Consensus       214 ---~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~PI~~~~~P-~flrf~Psl~t~~~V~S  285 (1118)
T KOG1275|consen  214 ---DAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALSPIQFPYGP-QFLRFHPSLTTRLAVTS  285 (1118)
T ss_pred             ---eccccceeeeecc---CCeEEEeecccccccccccchhhhhhhhhhh-ccCCcccccCc-hhhhhcccccceEEEEe
Confidence               3688888887764   456777653         7789999998643 23333333333 45778885 56788889


Q ss_pred             CCCcEEEEeCCCCeee--EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEe
Q 024451          158 DDGTCRLFDIRTGHQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  213 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d  213 (267)
                      ..|...+-|..+....  ..+.. +  .....+..+++|++++.++.|..+|.|.+|-
T Consensus       286 ~sGq~q~vd~~~lsNP~~~~~~v-~--p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  286 QSGQFQFVDTATLSNPPAGVKMV-N--PNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccceeeccccccCCCccceeEE-c--cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            9999999994332111  11111 1  1223489999999999999999999999997

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.45  E-value=0.00037  Score=58.23  Aligned_cols=184  Identities=16%  Similarity=0.141  Sum_probs=103.1

Q ss_pred             eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc-c
Q 024451           61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-G  139 (267)
Q Consensus        61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~  139 (267)
                      .++.++.++.|..||.++++.+..+.............+..+.  + ..++.+..++.+..+|.+.+......-.... +
T Consensus       147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g  223 (377)
T TIGR03300       147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG  223 (377)
T ss_pred             EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCC
Confidence            5667778999999999988765554321100000000111122  2 2456677788899888765432221100000 0


Q ss_pred             --ce---eEEEEec--CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEE
Q 024451          140 --DV---NTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW  212 (267)
Q Consensus       140 --~i---~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~  212 (267)
                        .+   ..+.-+|  .+..+..++.++.+..+|.++++......  . ..    ...  ....+..+++++.+|.++.+
T Consensus       224 ~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--~-~~----~~~--p~~~~~~vyv~~~~G~l~~~  294 (377)
T TIGR03300       224 RTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD--A-SS----YQG--PAVDDNRLYVTDADGVVVAL  294 (377)
T ss_pred             CCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec--c-CC----ccC--ceEeCCEEEEECCCCeEEEE
Confidence              00   0011111  24577778889999999999887553321  1 11    111  12346678888899999999


Q ss_pred             eCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          213 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      |..+++.+.+...+.   .....+...  .+..|++++.||.+.+++..
T Consensus       295 d~~tG~~~W~~~~~~---~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~  338 (377)
T TIGR03300       295 DRRSGSELWKNDELK---YRQLTAPAV--VGGYLVVGDFEGYLHWLSRE  338 (377)
T ss_pred             ECCCCcEEEcccccc---CCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence            998887665432111   111111122  36688889999999998863

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.43  E-value=0.0006  Score=55.77  Aligned_cols=233  Identities=13%  Similarity=0.008  Sum_probs=115.5

Q ss_pred             CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee---------CCCeEEEEeCCCCeeEEEeCCcc
Q 024451           19 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---------GDQTCVLWDITTGLRTSVFGGEF   89 (267)
Q Consensus        19 ~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---------~d~~v~iwd~~~~~~~~~~~~~~   89 (267)
                      +++.+.|....       +...++..-..+-. + ++|++..+.++.+         .+..|.+||..+.+....+....
T Consensus        27 ~~v~ViD~~~~-------~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~   97 (352)
T TIGR02658        27 TQVYTIDGEAG-------RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE   97 (352)
T ss_pred             ceEEEEECCCC-------EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence            88999997652       12232222122222 3 7888776666666         68999999999987766554210


Q ss_pred             c--cCCccceEEEEEeCCCCeEEEEecC-CCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451           90 Q--SGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  166 (267)
Q Consensus        90 ~--~~~~~~i~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  166 (267)
                      .  ...-.....+.+++.+..++++--. +..|.+.|+.. .+.+..+.-. +...-...+ +.. +..-+.||......
T Consensus        98 ~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~-~kvv~ei~vp-~~~~vy~t~-e~~-~~~~~~Dg~~~~v~  173 (352)
T TIGR02658        98 GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG-KAFVRMMDVP-DCYHIFPTA-NDT-FFMHCRDGSLAKVG  173 (352)
T ss_pred             CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCC-CcEEEEEeCC-CCcEEEEec-CCc-cEEEeecCceEEEE
Confidence            0  0011122355667654444444423 78899999874 4445444321 111111111 111 11224455544433


Q ss_pred             CCCCeeeEEEEeecCCCCCCcE-EEEEEcc-CCCEEEEEEeCCeEEEEeCCcc-----ceeeeccccc---CCccceEEE
Q 024451          167 IRTGHQLQVYYQQHGENEIPHV-TSIAFSI-SGRLLFAGYSNGDCYVWDTLLA-----KVVLNLGSLQ---NSHEGRITC  236 (267)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~~~---~~~~~~v~~  236 (267)
                      +.+......-..........++ ..-.|++ ++..+.+.++ |.|++.|+...     +....+..-.   .-..+.+.-
T Consensus       174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~  252 (352)
T TIGR02658       174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ  252 (352)
T ss_pred             ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence            3322111100000000000000 0003455 8888888877 99999995332     2111110000   001233445


Q ss_pred             EEECCCCCeEEEeEC----------CCcEEEEecCceEe
Q 024451          237 LGLSADGSALCTGSW----------DTNLKIWAFGGYRR  265 (267)
Q Consensus       237 ~~~~p~~~~l~sgs~----------dg~i~~w~~~~~~~  265 (267)
                      ++++|+++.+.....          .+.|.++|...+++
T Consensus       253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv  291 (352)
T TIGR02658       253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR  291 (352)
T ss_pred             EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence            999999988776432          24688888766654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=2e-05  Score=63.32  Aligned_cols=86  Identities=15%  Similarity=0.198  Sum_probs=70.3

Q ss_pred             cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451           39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  118 (267)
Q Consensus        39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~  118 (267)
                      ...+.+|...|..++|+|.+..++..++.++.|+|.|+++......+.     .+ ..+.+++|...+.+.+-.|..+|.
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-----a~-~~~wSC~wDlde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-----AY-NQIWSCCWDLDERHVIYAGLQNGM  259 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-----cc-CCceeeeeccCCcceeEEeccCce
Confidence            346778899999999999887788999999999999999876555542     23 678999999877777777889999


Q ss_pred             EEEEeCCCcccc
Q 024451          119 ARLWDTRVASRA  130 (267)
Q Consensus       119 i~iwd~~~~~~~  130 (267)
                      |.|||++....+
T Consensus       260 VlvyD~R~~~~~  271 (463)
T KOG1645|consen  260 VLVYDMRQPEGP  271 (463)
T ss_pred             EEEEEccCCCch
Confidence            999999876543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.41  E-value=1.1e-07  Score=80.14  Aligned_cols=205  Identities=18%  Similarity=0.260  Sum_probs=128.9

Q ss_pred             eeeEEEEEEecCCC-eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEe----cCCCeEE
Q 024451           46 KGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG----SCDSTAR  120 (267)
Q Consensus        46 ~~~v~~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~----~~d~~i~  120 (267)
                      ...+.|+++....+ -.++.|..+|.|-+-.+......   ..++.+++...+++++|++-+...+++|    -.|..++
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~  132 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK  132 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc---cceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence            34577777765444 46778889999988877644222   2345577888999999998766666655    3467899


Q ss_pred             EEeCCCccc-c--eEEeec-cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc-
Q 024451          121 LWDTRVASR-A--VRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-  195 (267)
Q Consensus       121 iwd~~~~~~-~--~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-  195 (267)
                      |||....-. +  --.+.+ ......+++|..+.+.+.+|...+.++++|++.........      ....+..+..+| 
T Consensus       133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv------nTk~vqG~tVdp~  206 (783)
T KOG1008|consen  133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV------NTKYVQGITVDPF  206 (783)
T ss_pred             ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh------hhhhcccceecCC
Confidence            999864310 1  111222 33456688888888999999999999999998422111000      011355666677 


Q ss_pred             CCCEEEEEEeCCeEEEEeC-Cccce-eeecccccCCccceEEEEEECCCCC-eEEEeEC-CCcEEEEec
Q 024451          196 SGRLLFAGYSNGDCYVWDT-LLAKV-VLNLGSLQNSHEGRITCLGLSADGS-ALCTGSW-DTNLKIWAF  260 (267)
Q Consensus       196 ~~~~l~~g~~dg~i~i~d~-~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~-~l~sgs~-dg~i~~w~~  260 (267)
                      ...++++- .||.+.+||. +.-+. +....+-+......+..++|.|... .|++.+. .++|+++++
T Consensus       207 ~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  207 SPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             CCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            55566555 5999999994 22221 1112111222334689999999643 4455555 467888875

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.38  E-value=0.00056  Score=53.56  Aligned_cols=194  Identities=18%  Similarity=0.184  Sum_probs=115.8

Q ss_pred             EEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-c
Q 024451           52 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-A  130 (267)
Q Consensus        52 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~  130 (267)
                      ..|.+..+.++++--..+.|..|+..++.......        .....+.+...+++++++ ..++ +.++|...... .
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--------~~~~G~~~~~~~g~l~v~-~~~~-~~~~d~~~g~~~~   74 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--------PGPNGMAFDRPDGRLYVA-DSGG-IAVVDPDTGKVTV   74 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--------SSEEEEEEECTTSEEEEE-ETTC-EEEEETTTTEEEE
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--------CCCceEEEEccCCEEEEE-EcCc-eEEEecCCCcEEE
Confidence            45677555677777778999999998876543211        115666676445555544 4444 45558764321 1


Q ss_pred             eEEee--c-cccceeEEEEecCCCEEEEeeCC--------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451          131 VRTFH--G-HEGDVNTVKFFPDGNRFGTGSDD--------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  199 (267)
Q Consensus       131 ~~~~~--~-~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  199 (267)
                      +....  . .....+.+++.|+|++.++....        +.+..++.. ++. ......     ......++|+|+++.
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~-----~~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADG-----LGFPNGIAFSPDGKT  147 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEE-----ESSEEEEEEETTSSE
T ss_pred             EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecC-----cccccceEECCcchh
Confidence            11121  1 23457899999999977776543        345556655 333 222221     124689999999997


Q ss_pred             EEE-EEeCCeEEEEeCCccce-ee---ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          200 LFA-GYSNGDCYVWDTLLAKV-VL---NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       200 l~~-g~~dg~i~i~d~~~~~~-~~---~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      |+. -+..+.|+.|+...... +.   .+..+ ....+..-.+++..+|++.++.-..+.|.+++..|.
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~  215 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDF-PGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK  215 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE--SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEc-CCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc
Confidence            764 45678899998753222 11   11111 112235778999999999888777889999987653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.37  E-value=4.2e-05  Score=64.53  Aligned_cols=69  Identities=25%  Similarity=0.274  Sum_probs=57.0

Q ss_pred             CcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          186 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       186 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ..+.+.+++|+...++.|+.||.|.+||...+-....      ...-..+.++|+|+|.++++|+.-|.+.+||+
T Consensus       260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM  328 (545)
T ss_pred             CcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee------eecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence            4688999999999999999999999999765432221      12334678999999999999999999999995

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.36  E-value=0.00022  Score=60.36  Aligned_cols=74  Identities=23%  Similarity=0.333  Sum_probs=60.3

Q ss_pred             ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451          136 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  215 (267)
Q Consensus       136 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~  215 (267)
                      ..+..+.+++++|+.+.++.|+.||+|.+||...+...  ..+..     ..++.++|+|+|.++++|+..|++.+||+.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~-----~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAE-----FIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeec-----ccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            45678999999999999999999999999998765322  21111     235889999999999999999999999974


Q ss_pred             c
Q 024451          216 L  216 (267)
Q Consensus       216 ~  216 (267)
                      .
T Consensus       330 L  330 (545)
T PF11768_consen  330 L  330 (545)
T ss_pred             c
Confidence            4

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=0.00057  Score=60.33  Aligned_cols=201  Identities=13%  Similarity=0.127  Sum_probs=120.4

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeee-EEEEEEecCCCeeEEEeeCCC-----eEEEEeCC
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY-VSCCQYVPDEDTHLITSSGDQ-----TCVLWDIT   77 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~   77 (267)
                      ++++.+..++-|+.||.|.+++-..        ...+.++++... |..+- .-.+..+|++-++|+     .|+||+++
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~--------~~~~~fqa~~~siv~~L~-~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSF--------QLIRGFQAYEQSIVQFLY-ILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccc--------eeeehheecchhhhhHhh-cccCceEEEEEeecCCCCceEEEEeccc
Confidence            5889999999999999988887432        234556666655 33332 333446888877775     49999996


Q ss_pred             CC------eeE---EEeCCccccC-CccceEEEEEeCCCCeEEEEecCCCeEEEEe--CCCcccc-eEEeeccccceeEE
Q 024451           78 TG------LRT---SVFGGEFQSG-HTADVLSVSISGSNSRMFVSGSCDSTARLWD--TRVASRA-VRTFHGHEGDVNTV  144 (267)
Q Consensus        78 ~~------~~~---~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd--~~~~~~~-~~~~~~~~~~i~~~  144 (267)
                      ..      ...   .++..  ..+ -..++.+++++.. -+.++.|-.+|.|..+.  +...+.. ......-+.+|+.+
T Consensus       101 k~~~n~sP~c~~~~ri~~~--~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL  177 (933)
T KOG2114|consen  101 KVDKNNSPQCLYEHRIFTI--KNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL  177 (933)
T ss_pred             ccCCCCCcceeeeeeeecc--CCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee
Confidence            42      111   11111  122 2345567777754 66788888999988873  2111111 11122235689999


Q ss_pred             EEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee
Q 024451          145 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL  221 (267)
Q Consensus       145 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~  221 (267)
                      .+..+++.+.-...-..|.+|.+..........    .++.....+..|++....++++. +..+++||....+...
T Consensus       178 ~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~l----d~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cf  249 (933)
T KOG2114|consen  178 ALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVL----DNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCF  249 (933)
T ss_pred             EEecCCceeEEEEecceeEEEEecCCCcceeee----ccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceee
Confidence            998887763333344589999987433112212    23334577888887666444443 4568999976544433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=1.8e-05  Score=68.71  Aligned_cols=147  Identities=16%  Similarity=0.222  Sum_probs=99.4

Q ss_pred             ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEE
Q 024451           96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV  175 (267)
Q Consensus        96 ~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  175 (267)
                      .+.+.+++   +++++-|.-+|.+++.+....  + +....|...      ..+|.++++|+.||+|.|..+-+.+....
T Consensus        41 ~is~~av~---~~~~~~GtH~g~v~~~~~~~~--~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   41 AISCCAVH---DKFFALGTHRGAVYLTTCQGN--P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             HHHHHHhh---cceeeeccccceEEEEecCCc--c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            34444443   467888999999999987532  2 333334332      56799999999999999998877654432


Q ss_pred             EEeecCCCCCCcEEEEEEccC-----CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeE
Q 024451          176 YYQQHGENEIPHVTSIAFSIS-----GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  250 (267)
Q Consensus       176 ~~~~~~~~~~~~v~~~~~s~~-----~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs  250 (267)
                      +-      -..++.+++++|+     .+.+++|+..| +.++.-.-.......  ......++|.+++|.  |+++|=++
T Consensus       109 ~d------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~--g~lIAWan  177 (846)
T KOG2066|consen  109 YD------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWR--GNLIAWAN  177 (846)
T ss_pred             Ee------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--eeecCccceEEEEec--CcEEEEec
Confidence            21      1235789999997     45788888888 888763221111011  113457899999996  78888876


Q ss_pred             CCCcEEEEecCceEec
Q 024451          251 WDTNLKIWAFGGYRRV  266 (267)
Q Consensus       251 ~dg~i~~w~~~~~~~~  266 (267)
                      .+ -|++|+....+|+
T Consensus       178 d~-Gv~vyd~~~~~~l  192 (846)
T KOG2066|consen  178 DD-GVKVYDTPTRQRL  192 (846)
T ss_pred             CC-CcEEEecccccee
Confidence            55 5799998777765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.20  E-value=8.2e-05  Score=65.34  Aligned_cols=156  Identities=15%  Similarity=0.256  Sum_probs=99.2

Q ss_pred             CCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCCCc-----EEEEeCCCCe--e-eEE
Q 024451          105 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGT-----CRLFDIRTGH--Q-LQV  175 (267)
Q Consensus       105 ~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~-----i~iwd~~~~~--~-~~~  175 (267)
                      +++..++.|+.+|.|-+.+-.  .+..+.++++...+...-+.-+ .+++++.++|+.     ++|||++..+  . .+.
T Consensus        33 s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c  110 (933)
T KOG2114|consen   33 SSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC  110 (933)
T ss_pred             CCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence            345677889999998887643  3344667777665433333333 368888887764     9999986531  1 111


Q ss_pred             E-----EeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc--cceeeecccccCCccceEEEEEECCCCCeEEE
Q 024451          176 Y-----YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL--AKVVLNLGSLQNSHEGRITCLGLSADGSALCT  248 (267)
Q Consensus       176 ~-----~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s  248 (267)
                      +     .....+.+..++++++.+.+-..+++|..+|.|..+....  .+....  .......++|+.+++..+++.++-
T Consensus       111 ~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~--~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  111 LYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ--DYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             eeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce--eeeccCCCCceeeEEecCCceeEE
Confidence            1     1211223455788899999999999999999999985322  111111  111235679999999888876332


Q ss_pred             eECCCcEEEEecCceE
Q 024451          249 GSWDTNLKIWAFGGYR  264 (267)
Q Consensus       249 gs~dg~i~~w~~~~~~  264 (267)
                      ...-..|.+|.+.|..
T Consensus       189 v~Tt~~V~~y~l~gr~  204 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRT  204 (933)
T ss_pred             EEecceeEEEEecCCC
Confidence            3334678888876544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.19  E-value=0.0018  Score=51.37  Aligned_cols=201  Identities=17%  Similarity=0.226  Sum_probs=119.6

Q ss_pred             EEEEecCCCeeEEEeeCCCe-EEEEeCCCCeeEEEeCCc---cccCCccceEEEEEeCCCCeEEEE----ecCCCeEEEE
Q 024451           51 CCQYVPDEDTHLITSSGDQT-CVLWDITTGLRTSVFGGE---FQSGHTADVLSVSISGSNSRMFVS----GSCDSTARLW  122 (267)
Q Consensus        51 ~~~~~~~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~s----~~~d~~i~iw  122 (267)
                      .+..+|.....++.+-.-|+ ..+||..++.....+...   ...+|      ..|++....++.|    ....|.|-||
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEE
Confidence            45667766666777777765 668899888766554321   11233      3366544444433    3456889999


Q ss_pred             eCCCcccceEEeeccccceeEEEEecCCCEEEEe--e-----CCC-----------cEEEEeCCCCeeeEEEEeecCCCC
Q 024451          123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG--S-----DDG-----------TCRLFDIRTGHQLQVYYQQHGENE  184 (267)
Q Consensus       123 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~-----~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~  184 (267)
                      |....-..+..+..|.-.-+.+.+.|+|+.|+.+  +     +.|           .+-..|..+++.+....-. ...+
T Consensus        83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp-~~~~  161 (305)
T PF07433_consen   83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP-PDLH  161 (305)
T ss_pred             ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC-cccc
Confidence            9974445567777777667899999999777654  1     112           2444555666554432110 0112


Q ss_pred             CCcEEEEEEccCCCEEEEEEeCCe-------EEEEeCCccceeeeccc---ccCCccceEEEEEECCCCCeE-EEeECCC
Q 024451          185 IPHVTSIAFSISGRLLFAGYSNGD-------CYVWDTLLAKVVLNLGS---LQNSHEGRITCLGLSADGSAL-CTGSWDT  253 (267)
Q Consensus       185 ~~~v~~~~~s~~~~~l~~g~~dg~-------i~i~d~~~~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~l-~sgs~dg  253 (267)
                      .-.+..++++++|..++..-..|.       |.+++..  +.+..+..   ........+-+|++++++.++ +|+-..+
T Consensus       162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg  239 (305)
T PF07433_consen  162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG  239 (305)
T ss_pred             ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence            235888999999887776644442       2223211  11111100   001234568899999999877 4566688


Q ss_pred             cEEEEec
Q 024451          254 NLKIWAF  260 (267)
Q Consensus       254 ~i~~w~~  260 (267)
                      .+.+|+.
T Consensus       240 ~~~~~d~  246 (305)
T PF07433_consen  240 RVAVWDA  246 (305)
T ss_pred             EEEEEEC
Confidence            8999974

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.18  E-value=0.0018  Score=54.15  Aligned_cols=249  Identities=12%  Similarity=0.162  Sum_probs=126.6

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCC---------------------CCC---------------cccccccCCe
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKD---------------------GNL---------------PVSRMLSGHK   46 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~---------------------~~~---------------~~~~~~~~h~   46 (267)
                      +.|+++..-|+.+...|.|.+|....+....                     +..               .....+....
T Consensus         7 vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~   86 (395)
T PF08596_consen    7 VSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQ   86 (395)
T ss_dssp             EEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S
T ss_pred             EEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccC
Confidence            5678888889999999999999765421110                     000               0111233447


Q ss_pred             eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCcc---ccCCccceEEEEEe----CCCC---eEEEEecCC
Q 024451           47 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF---QSGHTADVLSVSIS----GSNS---RMFVSGSCD  116 (267)
Q Consensus        47 ~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----~~~~---~~~~s~~~d  116 (267)
                      ++|++++.+.-  .+++.|.++|.+.|-|++...-+.......   .......+.++.|.    ..+.   -.++.|...
T Consensus        87 g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~  164 (395)
T PF08596_consen   87 GPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS  164 (395)
T ss_dssp             -SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred             CcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence            88999988643  489999999999999998765444321111   11123345566654    1111   356778888


Q ss_pred             CeEEEEeCCC-ccc-----ceEEeeccccceeEEE-EecC-C-------------------CEEEEeeCCCcEEEEeCCC
Q 024451          117 STARLWDTRV-ASR-----AVRTFHGHEGDVNTVK-FFPD-G-------------------NRFGTGSDDGTCRLFDIRT  169 (267)
Q Consensus       117 ~~i~iwd~~~-~~~-----~~~~~~~~~~~i~~~~-~~~~-~-------------------~~l~~~~~d~~i~iwd~~~  169 (267)
                      |.+.+|.+.. ...     .......+.++|..+. +..+ |                   +.++....+..+|++..-+
T Consensus       165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~  244 (395)
T PF08596_consen  165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK  244 (395)
T ss_dssp             SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred             CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence            9999997642 111     1111123445555443 2111 0                   1244555678999999887


Q ss_pred             CeeeEEEEeecCCCCCCcEEEEEEc-----cCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCC
Q 024451          170 GHQLQVYYQQHGENEIPHVTSIAFS-----ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  244 (267)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  244 (267)
                      .+.....+.   .  ......+++-     ..+..|++-..+|.+++|.+...+.+.............+....++++|.
T Consensus       245 ~k~~~K~~~---~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd  319 (395)
T PF08596_consen  245 SKGAHKSFD---D--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD  319 (395)
T ss_dssp             --EEEEE-S---S---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred             Ccccceeec---c--ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence            666544331   1  1123344442     35667788889999999998877766554332222333445567789999


Q ss_pred             eEEEeECCCcEEEEe
Q 024451          245 ALCTGSWDTNLKIWA  259 (267)
Q Consensus       245 ~l~sgs~dg~i~~w~  259 (267)
                      .++-.|. ..+.++.
T Consensus       320 i~~~~gp-sE~~l~s  333 (395)
T PF08596_consen  320 IFYWTGP-SEIQLFS  333 (395)
T ss_dssp             EEEE-SS-SEEEEEE
T ss_pred             EEEEeCc-ccEEEEE
Confidence            8876543 3444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.17  E-value=0.002  Score=51.13  Aligned_cols=228  Identities=18%  Similarity=0.202  Sum_probs=120.3

Q ss_pred             eeeCC-CCCeEEEccCCCe-EEEeecCCCCCC-CCCCcccccccCCeeeEEEEEEecCCCeeEEEe-----eCCCeEEEE
Q 024451            3 CAFSP-TGQSVACGGLDSV-CSIFNLNSPTDK-DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-----SGDQTCVLW   74 (267)
Q Consensus         3 ~~~~~-~g~~l~~~~~d~~-v~~w~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-----~~d~~v~iw   74 (267)
                      ++.+| .+..++.+-.-|+ ..+||....... ....+.-+.+.||.      .|+|++. +|++.     ...|.|-+|
T Consensus        10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~-~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen   10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGR-LLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCC-EEEEeccccCCCcEEEEEE
Confidence            45667 4455666665544 446776543211 11223456777774      6788765 55543     335789999


Q ss_pred             eCC-CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEE-e----------------cCCCeEEEEeCCCcccceEE--e
Q 024451           75 DIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS-G----------------SCDSTARLWDTRVASRAVRT--F  134 (267)
Q Consensus        75 d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s-~----------------~~d~~i~iwd~~~~~~~~~~--~  134 (267)
                      |.. +-.++..+...-...|     .+.+.+....+++. |                .++-.+.+.|.+.+ ..+.+  +
T Consensus        83 d~~~~~~ri~E~~s~GIGPH-----el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~L  156 (305)
T PF07433_consen   83 DAARGYRRIGEFPSHGIGPH-----ELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVEL  156 (305)
T ss_pred             ECcCCcEEEeEecCCCcChh-----hEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceeeeeec
Confidence            998 4455555543222223     34455433222222 1                12223333333322 22222  2


Q ss_pred             --eccccceeEEEEecCCCEEEEeeCCCc-------EEEEeCCCCeeeEEEEeec--CCCCCCcEEEEEEccCCCEEEEE
Q 024451          135 --HGHEGDVNTVKFFPDGNRFGTGSDDGT-------CRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAG  203 (267)
Q Consensus       135 --~~~~~~i~~~~~~~~~~~l~~~~~d~~-------i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~g  203 (267)
                        .-|...|.-+++.++|..+...-..+.       +-+++.  ++.+..+....  ...-..++-+++++.++..+++.
T Consensus       157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t  234 (305)
T PF07433_consen  157 PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT  234 (305)
T ss_pred             CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence              235566778888888765554433222       222322  12111111000  01122468999999999988877


Q ss_pred             Ee-CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC
Q 024451          204 YS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  252 (267)
Q Consensus       204 ~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d  252 (267)
                      +- .|.+.+||..+++.+....      -..+..++-.+++ +++|.+..
T Consensus       235 sPrGg~~~~~d~~tg~~~~~~~------l~D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  235 SPRGGRVAVWDAATGRLLGSVP------LPDACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             CCCCCEEEEEECCCCCEeeccc------cCceeeeeecCCc-eEEeCCCc
Confidence            74 5789999998887764331      1234556666665 66665543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.15  E-value=0.002  Score=50.14  Aligned_cols=206  Identities=17%  Similarity=0.191  Sum_probs=110.4

Q ss_pred             cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEE
Q 024451           41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR  120 (267)
Q Consensus        41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~  120 (267)
                      .+.+-...+..+.|+|+.+.+++.....+.|...+.+ +..+..+...    -....-.+++.. +++++++.-.++.+.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~----g~~D~EgI~y~g-~~~~vl~~Er~~~L~   89 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD----GFGDYEGITYLG-NGRYVLSEERDQRLY   89 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S----S-SSEEEEEE-S-TTEEEEEETTTTEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC----CCCCceeEEEEC-CCEEEEEEcCCCcEE
Confidence            3445556689999999877777778888999888875 4444433211    134556677764 567777777789999


Q ss_pred             EEeCCCcccc-----eEEe-----eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCC---CeeeEEEEe-ec--CCCC
Q 024451          121 LWDTRVASRA-----VRTF-----HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQ-QH--GENE  184 (267)
Q Consensus       121 iwd~~~~~~~-----~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~-~~--~~~~  184 (267)
                      ++++......     ...+     ..++..+..++|+|.++.|..+-+....+++.++.   ...+..... ..  ....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            8887322211     1111     13456689999999888887777777777877654   222211111 00  1112


Q ss_pred             CCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceeeecccccCC-c-----cceEEEEEECCCCCeEEEeECCCcE
Q 024451          185 IPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS-H-----EGRITCLGLSADGSALCTGSWDTNL  255 (267)
Q Consensus       185 ~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-~-----~~~v~~~~~~p~~~~l~sgs~dg~i  255 (267)
                      ...++++.++|... +++.+..+..|..+|. .++....+ .+... |     -..-..++|.|+|++.++. .-+..
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlf  244 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLF  244 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEc-CCceE
Confidence            33578999998754 5566667788888984 44443322 11111 1     1235789999999877754 44433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=0.00026  Score=57.08  Aligned_cols=70  Identities=17%  Similarity=0.273  Sum_probs=57.6

Q ss_pred             ceeeCCCCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            2 TCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         2 ~~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      .++|+|..+ +|..++-+++|+|.|++...       +...+..| ..+++|.|..++..++..|-..|.|.+||++..
T Consensus       198 dlafSp~~~GLl~~asl~nkiki~dlet~~-------~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  198 DLAFSPFNEGLLGLASLGNKIKIMDLETSC-------VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             hhccCccccceeeeeccCceEEEEecccce-------eeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            478999877 78999999999999997632       33444555 789999999888888889999999999999754

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.11  E-value=0.0017  Score=54.16  Aligned_cols=138  Identities=21%  Similarity=0.264  Sum_probs=91.9

Q ss_pred             CccceEEEEEeCCCCeEE-EEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC---CcEEEEeCC
Q 024451           93 HTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIR  168 (267)
Q Consensus        93 ~~~~i~~~~~~~~~~~~~-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~  168 (267)
                      -.+.|..++|.|.+.++. ++|-.+..+-++|++. .  ++.+ ...+.=+.+.|+|.+++++.++-|   |.+-+||..
T Consensus       273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~-N--l~~~-~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~  348 (561)
T COG5354         273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG-N--LRFY-FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA  348 (561)
T ss_pred             ccccceeeeecccCCceeEEecccccceeeccccc-c--eEEe-cCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence            467899999987665543 4457888999999873 2  3322 234555788999999999988765   679999987


Q ss_pred             CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe------CCeEEEEeCCccceeeecccccCCccceEEEEEECCC
Q 024451          169 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  242 (267)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  242 (267)
                      .......-+.  .    ...+-+.|+|+++++.+...      |..+.|||....+..            ..+.+.|.|.
T Consensus       349 ~rf~~~~~~~--~----~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f------------el~~~~W~p~  410 (561)
T COG5354         349 GRFKVAGAFN--G----LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF------------ELTNITWDPS  410 (561)
T ss_pred             CceEEEEEee--c----CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh------------hhhhccccCC
Confidence            6543321111  1    12455679999999988653      678999997543221            3445666666


Q ss_pred             CCeEEEeECC
Q 024451          243 GSALCTGSWD  252 (267)
Q Consensus       243 ~~~l~sgs~d  252 (267)
                      |++..+.|.+
T Consensus       411 ~~~~ttsSs~  420 (561)
T COG5354         411 GQYVTTSSSC  420 (561)
T ss_pred             cccceeeccC
Confidence            6665554443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.05  E-value=8e-06  Score=71.48  Aligned_cols=107  Identities=22%  Similarity=0.332  Sum_probs=81.8

Q ss_pred             EEEecCCCEEEEee----CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce
Q 024451          144 VKFFPDGNRFGTGS----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  219 (267)
Q Consensus       144 ~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~  219 (267)
                      ..|+|...+|++++    ..|.|-||- ++|++-...      .....++++||+|..-.|+.|..-|.+.+|.....+.
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V------t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV------TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc------ccceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence            57889888888775    457788774 444421111      1122467899999999999999999999999665443


Q ss_pred             eeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          220 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       220 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .    .....|..+|..+.|||+|..|+++..-|.+.+|.++
T Consensus        94 h----tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 H----TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             e----eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            2    2235799999999999999999999999999999875

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.00  E-value=0.0039  Score=48.32  Aligned_cols=147  Identities=21%  Similarity=0.260  Sum_probs=86.4

Q ss_pred             CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEe
Q 024451           68 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF  147 (267)
Q Consensus        68 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~  147 (267)
                      +++|..||..+++.+......  ......+.. .+. .++ .+++++.++.+..||...+.. .-.... .+.+.... .
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~--~~~~~~~~~-~~~-~~~-~v~~~~~~~~l~~~d~~tG~~-~W~~~~-~~~~~~~~-~   73 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLG--PGIGGPVAT-AVP-DGG-RVYVASGDGNLYALDAKTGKV-LWRFDL-PGPISGAP-V   73 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECS--SSCSSEEET-EEE-ETT-EEEEEETTSEEEEEETTTSEE-EEEEEC-SSCGGSGE-E
T ss_pred             CCEEEEEECCCCCEEEEEECC--CCCCCccce-EEE-eCC-EEEEEcCCCEEEEEECCCCCE-EEEeec-ccccccee-e
Confidence            678899999888776655321  111222211 221 233 455667899999999865543 333322 22222212 2


Q ss_pred             cCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451          148 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  223 (267)
Q Consensus       148 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  223 (267)
                      ..+..++.++.|+.+..+|..+++.+........+. ............+..++++..++.|+.+|..+++.+...
T Consensus        74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~  148 (238)
T PF13360_consen   74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP-AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY  148 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT-CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred             ecccccccccceeeeEecccCCcceeeeeccccccc-cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe
Confidence            235566777788899999999998876532211111 111122223334788888888999999999988876554

...

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.97  E-value=0.00045  Score=61.90  Aligned_cols=140  Identities=15%  Similarity=0.195  Sum_probs=87.6

Q ss_pred             EeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC----CCeEEEEecCCCeEEEEeCCCcccceEEee----
Q 024451           64 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS----NSRMFVSGSCDSTARLWDTRVASRAVRTFH----  135 (267)
Q Consensus        64 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~----  135 (267)
                      .....+.|.-.|++.|+-+.....    ....++..+.-...    .......|-.+..+.-||.|.....+..-.    
T Consensus       499 ~~~~~~~ly~mDLe~GKVV~eW~~----~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y  574 (794)
T PF08553_consen  499 DPNNPNKLYKMDLERGKVVEEWKV----HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY  574 (794)
T ss_pred             cCCCCCceEEEecCCCcEEEEeec----CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc
Confidence            344567788889988876655431    22233555433211    112234677778899999986542221111    


Q ss_pred             ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451          136 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  214 (267)
Q Consensus       136 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~  214 (267)
                      .......|++-..+| ++|.|+.+|.||+||- .++....    ..++-..+|..+..+.||+++++.+ +-.|.|++.
T Consensus       575 ~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT----~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  575 SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKT----ALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhh----cCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            123456777776554 7999999999999993 4433222    2223345899999999999998875 556777774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.94  E-value=0.00015  Score=63.27  Aligned_cols=248  Identities=16%  Similarity=0.185  Sum_probs=140.4

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCC-eeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .+|+|.-+.++-...-..+.++|++...       +.....-..+.+..+++.|+.. ..|+..-.||.+.+|--.....
T Consensus       236 faf~p~~rn~lfi~~prellv~dle~~~-------~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~  308 (1062)
T KOG1912|consen  236 FAFSPHWRNILFITFPRELLVFDLEYEC-------CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPT  308 (1062)
T ss_pred             hhcChhhhceEEEEeccceEEEcchhhc-------eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCc
Confidence            4678877666666677789999986521       1122222234455667777543 3577888999999996543211


Q ss_pred             EEEeC-CccccCCccceEEEEEe-----------CCCCeEEEEecCCCeEEEEeCCCcccc-------------------
Q 024451           82 TSVFG-GEFQSGHTADVLSVSIS-----------GSNSRMFVSGSCDSTARLWDTRVASRA-------------------  130 (267)
Q Consensus        82 ~~~~~-~~~~~~~~~~i~~~~~~-----------~~~~~~~~s~~~d~~i~iwd~~~~~~~-------------------  130 (267)
                      ....+ +.+...-...+..++..           |.+...++.--.+|.+.+|+++.++..                   
T Consensus       309 ~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~  388 (1062)
T KOG1912|consen  309 EFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLS  388 (1062)
T ss_pred             cccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCc
Confidence            11110 00000111112222221           221222222344667777876522100                   


Q ss_pred             -----------eEEeeccccceeEEEEec-----------CCC-------EEEEeeCCCcEEEEeCCCCeeeEEEEeecC
Q 024451          131 -----------VRTFHGHEGDVNTVKFFP-----------DGN-------RFGTGSDDGTCRLFDIRTGHQLQVYYQQHG  181 (267)
Q Consensus       131 -----------~~~~~~~~~~i~~~~~~~-----------~~~-------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  181 (267)
                                 +..-.+|.....+...+|           .++       ++|.|.+.|+|.++|+.++.....+     
T Consensus       389 ~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~f-----  463 (1062)
T KOG1912|consen  389 TKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASF-----  463 (1062)
T ss_pred             eeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhh-----
Confidence                       001123444444433332           222       4788899999999999876533222     


Q ss_pred             CCCCCcEEEEEEccCCCEEEEEE---------eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC
Q 024451          182 ENEIPHVTSIAFSISGRLLFAGY---------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  252 (267)
Q Consensus       182 ~~~~~~v~~~~~s~~~~~l~~g~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d  252 (267)
                      .-+...|.++.|-.+.+++-.++         --+.+.+-|++++... .+...++..+.+|..+..|..|+||+..-.|
T Consensus       464 svht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk-~fR~l~~~despI~~irvS~~~~yLai~Fr~  542 (1062)
T KOG1912|consen  464 SVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK-RFRGLQKPDESPIRAIRVSSSGRYLAILFRR  542 (1062)
T ss_pred             cccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc-ccccCCCCCcCcceeeeecccCceEEEEecc
Confidence            11223466777766555554443         2346677787765432 3444556778899999999999999999999


Q ss_pred             CcEEEEecCce
Q 024451          253 TNLKIWAFGGY  263 (267)
Q Consensus       253 g~i~~w~~~~~  263 (267)
                      .-+.+|++.+.
T Consensus       543 ~plEiwd~kt~  553 (1062)
T KOG1912|consen  543 EPLEIWDLKTL  553 (1062)
T ss_pred             cchHHHhhccc
Confidence            99999997544

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.85  E-value=0.0013  Score=59.08  Aligned_cols=146  Identities=18%  Similarity=0.176  Sum_probs=87.5

Q ss_pred             CCeEEEEe-cCCCeEEEEeCCCcccceEEeeccccc-eeEEEEecCC-------CEEEEeeCCCcEEEEeCCCCeeeEEE
Q 024451          106 NSRMFVSG-SCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFPDG-------NRFGTGSDDGTCRLFDIRTGHQLQVY  176 (267)
Q Consensus       106 ~~~~~~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~-------~~l~~~~~d~~i~iwd~~~~~~~~~~  176 (267)
                      +..+++-. .....|+-.|+.. .+.+.....|... |..+  .|+.       ..-..|-.+..+..||.|-.....+.
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~  568 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLER-GKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD  568 (794)
T ss_pred             ccceEeecCCCCCceEEEecCC-CcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence            34444433 3456777788874 4456666655433 4443  3432       23456777889999999864311111


Q ss_pred             EeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEE
Q 024451          177 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK  256 (267)
Q Consensus       177 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~  256 (267)
                      .+.+........++++-+ ...+||+|+.+|.|++||. .++....   ...+...+|..|..+.||++++..+ +..+.
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt-~~G~iavgs~~G~IRLyd~-~g~~AKT---~lp~lG~pI~~iDvt~DGkwilaTc-~tyLl  642 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATT-EDGYIAVGSNKGDIRLYDR-LGKRAKT---ALPGLGDPIIGIDVTADGKWILATC-KTYLL  642 (794)
T ss_pred             ccccccccCCCceEEEec-CCceEEEEeCCCcEEeecc-cchhhhh---cCCCCCCCeeEEEecCCCcEEEEee-cceEE
Confidence            111111222345666544 4458999999999999994 3322111   1134578999999999999987544 67777


Q ss_pred             EEec
Q 024451          257 IWAF  260 (267)
Q Consensus       257 ~w~~  260 (267)
                      |.+.
T Consensus       643 Li~t  646 (794)
T PF08553_consen  643 LIDT  646 (794)
T ss_pred             EEEE
Confidence            7763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.78  E-value=0.00046  Score=59.58  Aligned_cols=110  Identities=16%  Similarity=0.261  Sum_probs=79.5

Q ss_pred             CCCeEEEEecCCCeEEEEeCCCcccceEEee--ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeE-EEEeecC
Q 024451          105 SNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ-VYYQQHG  181 (267)
Q Consensus       105 ~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~  181 (267)
                      ....+++-|+.-|.+.+|+-.. .. .+.++  +-.+.+.....+++..++|.|+..|.|.++.+..+.... .+.....
T Consensus        43 st~~~l~~GsS~G~lyl~~R~~-~~-~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d  120 (726)
T KOG3621|consen   43 ATEEYLAMGSSAGSVYLYNRHT-GE-MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD  120 (726)
T ss_pred             cCCceEEEecccceEEEEecCc-hh-hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence            3566888899999999998542 22 22222  233456677778888889999999999999987644332 2223333


Q ss_pred             CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451          182 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  216 (267)
Q Consensus       182 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~  216 (267)
                      ..+...|++++|++++..+.+|...|.|..-.+..
T Consensus       121 ~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  121 KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            33456799999999999999999999998877655

>smart00320 WD40 WD40 repeats

Probab=97.77  E-value=9.2e-05  Score=38.71  Aligned_cols=36  Identities=47%  Similarity=0.903  Sum_probs=31.7

Q ss_pred             eEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451          131 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  166 (267)
Q Consensus       131 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  166 (267)
                      ...+..|...|.++.|++.+..+++++.|+.+++||
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            445567888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.72  E-value=0.00047  Score=59.49  Aligned_cols=114  Identities=18%  Similarity=0.184  Sum_probs=83.1

Q ss_pred             EEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee--ee
Q 024451          145 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV--LN  222 (267)
Q Consensus       145 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~--~~  222 (267)
                      .++..+++++.|+.-|.+-+|+-..++.. .+...   .....+...+.+++..++|+|+..|.|.++-+......  ..
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~---~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNE---GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchhhh-ccccc---CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence            34456889999999999999997655443 22211   12234566678999999999999999999976542221  12


Q ss_pred             cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          223 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       223 ~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +....+.|...|++++|++|+..+.+|..-|.|.+-.++.
T Consensus       116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            2333456889999999999999999999999988776654

>smart00320 WD40 WD40 repeats

Probab=97.66  E-value=0.0001  Score=38.55  Aligned_cols=31  Identities=35%  Similarity=0.689  Sum_probs=28.4

Q ss_pred             CccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          229 SHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       229 ~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      .|...|.++.|+|+++++++++.|+.+++|+
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4677899999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.00033  Score=61.86  Aligned_cols=108  Identities=13%  Similarity=0.177  Sum_probs=74.8

Q ss_pred             EEEecCCCeeEEEee----CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc
Q 024451           52 CQYVPDEDTHLITSS----GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  127 (267)
Q Consensus        52 ~~~~~~~~~~l~s~~----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~  127 (267)
                      .+|+|.. .+++.++    ..|+|.|| .++|++..-..      ..-.+.+++|+| ..-.++.|-.-|.+.+|.... 
T Consensus        21 ~SWHPse-PlfAVA~fS~er~GSVtIf-adtGEPqr~Vt------~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~-   90 (1416)
T KOG3617|consen   21 SSWHPSE-PLFAVASFSPERGGSVTIF-ADTGEPQRDVT------YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNT-   90 (1416)
T ss_pred             cccCCCC-ceeEEEEecCCCCceEEEE-ecCCCCCcccc------cceehhhhccCh-HHHHHhhccccceeEEEecCC-
Confidence            4677865 4566554    35778877 33443221110      112345789996 445667788889999998753 


Q ss_pred             ccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCC
Q 024451          128 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  169 (267)
Q Consensus       128 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~  169 (267)
                      .+.......|..+|..+.|+|+|+.++++..=|.+.+|....
T Consensus        91 ~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   91 TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            333444557899999999999999999999999999998763

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.59  E-value=0.028  Score=49.17  Aligned_cols=98  Identities=19%  Similarity=0.167  Sum_probs=64.8

Q ss_pred             CCeEEEEeCCC----cccceEEeeccccceeEEEEecCCCEEEEee-CCCcEEEEeCCCCeee--------EEEEeecCC
Q 024451          116 DSTARLWDTRV----ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQL--------QVYYQQHGE  182 (267)
Q Consensus       116 d~~i~iwd~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~--------~~~~~~~~~  182 (267)
                      ++.|.+.|.+.    .......+. -....+.+.++|||+++++++ .+.++.|.|+.+.+..        ..+..+. .
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev-e  372 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP-E  372 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee-c
Confidence            35678888764    122233232 234568899999999987665 5899999999875421        0111111 1


Q ss_pred             CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451          183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  216 (267)
Q Consensus       183 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~  216 (267)
                      . .......+|+++|....+-.-|..|.-||+..
T Consensus       373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             c-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            1 11245778999999888888999999999765

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.52  E-value=0.043  Score=46.27  Aligned_cols=179  Identities=14%  Similarity=0.054  Sum_probs=96.9

Q ss_pred             eEEEeeCCCeEEEEeCCCCeeEEEeCCccccC-Cc----cce-EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe
Q 024451           61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSG-HT----ADV-LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF  134 (267)
Q Consensus        61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~~----~~i-~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~  134 (267)
                      .++.++.++.+...|.+++............+ +.    ..+ .+..+.  ++ .+..++.++.+..+|...+....+.-
T Consensus       207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~--~~-~vy~~~~~g~l~ald~~tG~~~W~~~  283 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV--GG-VVYALAYNGNLVALDLRSGQIVWKRE  283 (394)
T ss_pred             EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE--CC-EEEEEEcCCeEEEEECCCCCEEEeec
Confidence            35556778888888888776544322110000 00    000 011111  23 34456678889888887544332211


Q ss_pred             eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451          135 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  214 (267)
Q Consensus       135 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~  214 (267)
                      .   .....+.  ..+..+..++.|+.+..+|.++++.+...   ..... ....+...  .+..++.++.+|.|+.+|.
T Consensus       284 ~---~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~---~~~~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        284 Y---GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQ---SDLLH-RLLTAPVL--YNGYLVVGDSEGYLHWINR  352 (394)
T ss_pred             C---CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcc---cccCC-CcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence            1   1111122  24567777888999999999988754321   11000 01111111  3567888899999999999


Q ss_pred             CccceeeecccccCCccceEEE-EEECCCCCeEEEeECCCcEEEEe
Q 024451          215 LLAKVVLNLGSLQNSHEGRITC-LGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      .+++.+.....    ....+.+ ..+  .+..|..++.||.+..++
T Consensus       353 ~tG~~~~~~~~----~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        353 EDGRFVAQQKV----DSSGFLSEPVV--ADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             CCCCEEEEEEc----CCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence            88877654321    1111221 112  245677789999888765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.52  E-value=0.00041  Score=38.72  Aligned_cols=33  Identities=12%  Similarity=0.330  Sum_probs=29.4

Q ss_pred             ccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          230 HEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ...+|.+++|+|...+||.|+.||.|.+|.+++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            345799999999999999999999999999844

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00094  Score=57.04  Aligned_cols=93  Identities=17%  Similarity=0.232  Sum_probs=68.7

Q ss_pred             cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcE-EEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451          139 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV-TSIAFSISGRLLFAGYSNGDCYVWDTLLA  217 (267)
Q Consensus       139 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  217 (267)
                      ..+.-+.|+|.-..+|.+..+|.+.+..+. .+.+..+.. ++    ..+ .+++|.|||+.|+.|..||.|++-|...+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~----~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PG----ENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CC----CccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence            346788999999999999999999998876 444443321 11    134 49999999999999999999999999887


Q ss_pred             ceeeecccccCCccceEEEEEEC
Q 024451          218 KVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       218 ~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      ..+....   ..-+.+|.++-|.
T Consensus        95 ~~l~~~~---~s~e~~is~~~w~  114 (665)
T KOG4640|consen   95 GRLVSFL---FSVETDISKGIWD  114 (665)
T ss_pred             Cceeccc---cccccchheeecc
Confidence            7665421   1234456666665

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.51  E-value=0.037  Score=45.23  Aligned_cols=134  Identities=12%  Similarity=0.179  Sum_probs=79.4

Q ss_pred             CeEEEEeCCCc---ccceEEe--eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCe-eeEEEEeecCCCCCCcEEE
Q 024451          117 STARLWDTRVA---SRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHVTS  190 (267)
Q Consensus       117 ~~i~iwd~~~~---~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~  190 (267)
                      |.|.++++...   ...+..+  ....++|+++.-. .+ .++.+. .+.|.+|++...+ ...... ...   ...+.+
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~-~~~---~~~i~s  134 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAF-YDS---PFYITS  134 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEE-E-B---SSSEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhhe-ecc---eEEEEE
Confidence            88999988752   0112211  2346778888766 33 444433 4799999998776 332221 111   124555


Q ss_pred             EEEccCCCEEEEEEeCCeEEEEeCCc-cceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          191 IAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       191 ~~~s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      +.  ..++++++|.....+.++.... .+.+......  .....+++++|-++++.++.+..+|.+.++.+.
T Consensus       135 l~--~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d--~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  135 LS--VFKNYILVGDAMKSVSLLRYDEENNKLILVARD--YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EE--EETTEEEEEESSSSEEEEEEETTTE-EEEEEEE--SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             Ee--ccccEEEEEEcccCEEEEEEEccCCEEEEEEec--CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            54  3466999998888777764322 2222222221  234568888888777799999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.48  E-value=0.048  Score=45.94  Aligned_cols=225  Identities=13%  Similarity=0.076  Sum_probs=115.0

Q ss_pred             CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451            9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE   88 (267)
Q Consensus         9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   88 (267)
                      +..++.++.++.+..+|.....     ..-...+.   +.+.+--.. .++ .++.++.++.+..+|.++++....+...
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~-----~~W~~~~~---~~~~ssP~v-~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~  189 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGE-----VAWQTKVA---GEALSRPVV-SDG-LVLVHTSNGMLQALNESDGAVKWTVNLD  189 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCC-----CcccccCC---CceecCCEE-ECC-EEEEECCCCEEEEEEccCCCEeeeecCC
Confidence            4556677788999888875422     11111111   112211011 123 4666788899999999999876655321


Q ss_pred             cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc-c-----ceeEEEEec--CCCEEEEeeCCC
Q 024451           89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-G-----DVNTVKFFP--DGNRFGTGSDDG  160 (267)
Q Consensus        89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~-----~i~~~~~~~--~~~~l~~~~~d~  160 (267)
                      ..........+-.+.  ++ .++.+..++.+...|...+......-.... +     ....+..+|  .+..++.++.++
T Consensus       190 ~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g  266 (394)
T PRK11138        190 VPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG  266 (394)
T ss_pred             CCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCC
Confidence            100000000011111  22 344566778888777764432221100000 0     001111122  245677778899


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      .+.-+|..+++.+...   ...    ....+  ...+..++.++.+|.++.+|..+++.+.+.....  + ....+..+ 
T Consensus       267 ~l~ald~~tG~~~W~~---~~~----~~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~-~~~~sp~v-  333 (394)
T PRK11138        267 NLVALDLRSGQIVWKR---EYG----SVNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL--H-RLLTAPVL-  333 (394)
T ss_pred             eEEEEECCCCCEEEee---cCC----CccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccC--C-CcccCCEE-
Confidence            9999999998765322   111    01111  2245677778889999999998877654332111  0 01111111 


Q ss_pred             CCCCeEEEeECCCcEEEEec
Q 024451          241 ADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       241 p~~~~l~sgs~dg~i~~w~~  260 (267)
                       .+..|..++.||.+...+.
T Consensus       334 -~~g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        334 -YNGYLVVGDSEGYLHWINR  352 (394)
T ss_pred             -ECCEEEEEeCCCEEEEEEC
Confidence             2455666777887776654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.022  Score=48.21  Aligned_cols=143  Identities=16%  Similarity=0.201  Sum_probs=85.6

Q ss_pred             EEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC--EE-----EEeeCCCcEEEEeCCCCee-eEEEEeec
Q 024451          109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN--RF-----GTGSDDGTCRLFDIRTGHQ-LQVYYQQH  180 (267)
Q Consensus       109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l-----~~~~~d~~i~iwd~~~~~~-~~~~~~~~  180 (267)
                      ++.++.....++=.|++. .+.+....-|.. |+-+.+.|+.+  .+     +.|-.|..|.-||.+-... .....+.+
T Consensus       348 il~~~~~~~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             EeeCCCCcCcceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence            444555555677677764 344555544443 77788887654  22     3455788888899875332 11122222


Q ss_pred             CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       181 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      .....-...|.+- ....++++|+.+|.|++||. ..+....   ..++...+|..+..+.+|++++..+ +.++.|-+
T Consensus       426 qy~~k~nFsc~aT-T~sG~IvvgS~~GdIRLYdr-i~~~AKT---AlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~  498 (644)
T KOG2395|consen  426 QYSTKNNFSCFAT-TESGYIVVGSLKGDIRLYDR-IGRRAKT---ALPGLGDAIKHVDVTADGKWILATC-KTYLLLID  498 (644)
T ss_pred             ccccccccceeee-cCCceEEEeecCCcEEeehh-hhhhhhh---cccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence            2222222344443 34458999999999999995 3322211   1145678999999999999988544 55555543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.46  E-value=0.0038  Score=52.76  Aligned_cols=139  Identities=15%  Similarity=0.130  Sum_probs=87.1

Q ss_pred             EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-----------CCcEEEEe
Q 024451           98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-----------DGTCRLFD  166 (267)
Q Consensus        98 ~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------d~~i~iwd  166 (267)
                      +-+.|+|. +.+++|--.. -|.+|-=..-. .++.+ .|. .|.-+.|+|+.+||++-+.           ...++|||
T Consensus       214 tyv~wSP~-GTYL~t~Hk~-GI~lWGG~~f~-r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  214 TYVRWSPK-GTYLVTFHKQ-GIALWGGESFD-RIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeEEecCC-ceEEEEEecc-ceeeecCccHH-HHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            45678864 4566554443 47788533212 22223 354 4788999999999998652           25799999


Q ss_pred             CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeE
Q 024451          167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL  246 (267)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  246 (267)
                      +++|.....+...  ......-.-+.||.++.++|.-.. ..|.||+.....++.. .   ...-+.|....|+|.++.|
T Consensus       289 I~tG~lkrsF~~~--~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~-K---slki~gIr~FswsP~~~ll  361 (698)
T KOG2314|consen  289 IATGLLKRSFPVI--KSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK-K---SLKISGIRDFSWSPTSNLL  361 (698)
T ss_pred             ccccchhcceecc--CCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecc-c---ccCCccccCcccCCCcceE
Confidence            9999776554321  111223355789999999987655 5688998655332211 1   1123457778889988777


Q ss_pred             EE
Q 024451          247 CT  248 (267)
Q Consensus       247 ~s  248 (267)
                      |=
T Consensus       362 AY  363 (698)
T KOG2314|consen  362 AY  363 (698)
T ss_pred             EE
Confidence            63

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.44  E-value=0.01  Score=50.26  Aligned_cols=181  Identities=19%  Similarity=0.277  Sum_probs=97.5

Q ss_pred             eeCCCCCeEEEcc---CC-CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEE--eCC
Q 024451            4 AFSPTGQSVACGG---LD-SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW--DIT   77 (267)
Q Consensus         4 ~~~~~g~~l~~~~---~d-~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iw--d~~   77 (267)
                      +|+|++..++-..   .. ..+.++++....     .+......+++.   .-+|+|++..++++...|+...||  |+.
T Consensus       199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~-----~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGK-----RPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             ccCcCCCceEEEEEecCCCceEEEEeccCCc-----cceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            5788887655542   22 346666765422     122223344443   347899988888888888875555  666


Q ss_pred             CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451           78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  157 (267)
                      ++........   .+...   .-.|+|.+..++.+.+..|.-.||-..........+....+.-..-.++|+|++++..+
T Consensus       271 ~~~~~~Lt~~---~gi~~---~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         271 GKNLPRLTNG---FGINT---SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             CCcceecccC---Ccccc---CccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEe
Confidence            5543221111   11111   33467666666667777776555543333333333433333333778899999998776


Q ss_pred             CC-Cc--EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451          158 DD-GT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  204 (267)
Q Consensus       158 ~d-~~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~  204 (267)
                      .. |.  |.+.|+.++.....+...      .....-+|++++..++-.+
T Consensus       345 ~~~g~~~i~~~~~~~~~~~~~lt~~------~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         345 SSGGQWDIDKNDLASGGKIRILTST------YLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             ccCCceeeEEeccCCCCcEEEcccc------ccCCCCCcCCCCceEEEec
Confidence            43 44  556666554432222111      1123345677777665443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.39  E-value=0.00041  Score=52.01  Aligned_cols=142  Identities=16%  Similarity=0.143  Sum_probs=84.2

Q ss_pred             EEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeee-EEEEeecCCCCCCc
Q 024451          109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPH  187 (267)
Q Consensus       109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~  187 (267)
                      .+...+.|+.|+-++++......++..-|...   ......+..+++|+.||.|.+|...-.... ..+     ......
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~-----~s~~e~  103 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRV-----CSGEES  103 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhh-----hccccc
Confidence            34566778888877765322222222112111   122234567999999999999987521111 000     000011


Q ss_pred             E-EEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCcc-ceEEEEEECCCCCeEEEe--ECCCcEEEEecCc
Q 024451          188 V-TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTG--SWDTNLKIWAFGG  262 (267)
Q Consensus       188 v-~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~sg--s~dg~i~~w~~~~  262 (267)
                      + ..+.-..++.+..++..+|.++.|+.+..+.+-..    ..|+ .++..+..+-.+++++..  |.|..++.|++..
T Consensus       104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~----g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV----GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeccccccccceeEEeccCCceeeeccccCceeeee----ccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            1 12222234457888999999999999887765433    3455 566666667777888887  8888888888643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.39  E-value=0.02  Score=48.43  Aligned_cols=159  Identities=18%  Similarity=0.224  Sum_probs=85.6

Q ss_pred             eEEEEEEecCCCeeEEEe--eCC-CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeC
Q 024451           48 YVSCCQYVPDEDTHLITS--SGD-QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  124 (267)
Q Consensus        48 ~v~~~~~~~~~~~~l~s~--~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~  124 (267)
                      .+..-.|+|++.......  ... ..+.+++++++........   .++..   .-.|+|...+++.+...||...||-.
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~---~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~  267 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF---NGNNG---APAFSPDGSKLAFSSSRDGSPDIYLM  267 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc---CCccC---CccCCCCCCEEEEEECCCCCccEEEE
Confidence            344455666654422221  112 3588889988765554431   12222   23477767777778888887665533


Q ss_pred             CCcccceEEeeccccceeEEEEecCCCEEEEee-CCCc--EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451          125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF  201 (267)
Q Consensus       125 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  201 (267)
                      ....+....+..-.+.-..=.|+|+|++++-.+ ..|.  |-+.|.+...... +.....     .-..-.|+|+|.+++
T Consensus       268 dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~-----~~~~p~~SpdG~~i~  341 (425)
T COG0823         268 DLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGG-----GNSNPVWSPDGDKIV  341 (425)
T ss_pred             cCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCC-----CCcCccCCCCCCEEE
Confidence            222222333332223334668899999887655 4444  5555665544322 211111     112456899999988


Q ss_pred             EEEe-CCe--EEEEeCCccc
Q 024451          202 AGYS-NGD--CYVWDTLLAK  218 (267)
Q Consensus       202 ~g~~-dg~--i~i~d~~~~~  218 (267)
                      ..+. +|.  |.+.|.....
T Consensus       342 ~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         342 FESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             EEeccCCceeeEEeccCCCC
Confidence            7664 454  5555554433

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.0011  Score=56.57  Aligned_cols=71  Identities=14%  Similarity=0.199  Sum_probs=57.0

Q ss_pred             cEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEE-EEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .+..+.|+|.-..+|.+..+|+|.+.-.. ...+..+    ..++..++ +++|.|||+.||.|=.||+|++-|...
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti----p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI----PIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEec----cCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence            57788999999999999999999888765 3333333    22455566 999999999999999999999998743

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.30  E-value=0.023  Score=38.01  Aligned_cols=97  Identities=19%  Similarity=0.286  Sum_probs=61.6

Q ss_pred             EEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE
Q 024451           53 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR  132 (267)
Q Consensus        53 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~  132 (267)
                      .|..++...|+.||.|..||+|+-+.-.  ..+      .-.+.+.++.....  ..|+.+-.+|+|-+|+-.  .+..+
T Consensus         9 d~d~dg~~eLlvGs~D~~IRvf~~~e~~--~Ei------~e~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~--~RlWR   76 (111)
T PF14783_consen    9 DFDGDGENELLVGSDDFEIRVFKGDEIV--AEI------TETDKVTSLCSLGG--GRFAYALANGTVGVYDRS--QRLWR   76 (111)
T ss_pred             ecCCCCcceEEEecCCcEEEEEeCCcEE--EEE------ecccceEEEEEcCC--CEEEEEecCCEEEEEeCc--ceeee
Confidence            3444555789999999999999876322  211      12345677766543  568999999999999853  33344


Q ss_pred             EeeccccceeEEEEec-CC---CEEEEeeCCCcEE
Q 024451          133 TFHGHEGDVNTVKFFP-DG---NRFGTGSDDGTCR  163 (267)
Q Consensus       133 ~~~~~~~~i~~~~~~~-~~---~~l~~~~~d~~i~  163 (267)
                      .-..|  .+.++.+.. ++   .-|++|-.+|.|-
T Consensus        77 iKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            33222  255554432 32   3688888888764

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.29  E-value=0.07  Score=43.59  Aligned_cols=185  Identities=12%  Similarity=0.195  Sum_probs=102.2

Q ss_pred             CeeEEEeeC----------CCeEEEEeCCCC----eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeC
Q 024451           59 DTHLITSSG----------DQTCVLWDITTG----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  124 (267)
Q Consensus        59 ~~~l~s~~~----------d~~v~iwd~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~  124 (267)
                      ..+++.|..          .|.|.++++...    .+.....   .....+.|.+++..  ++++++  +.++.|.+|++
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~--~~~lv~--~~g~~l~v~~l  114 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSF--NGRLVV--AVGNKLYVYDL  114 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEE--TTEEEE--EETTEEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhh--CCEEEE--eecCEEEEEEc
Confidence            467776654          288999999873    1222111   11245678888776  345443  33478999998


Q ss_pred             CCcccceEEeeccc--cceeEEEEecCCCEEEEeeCCCcEEEEeCCC-CeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451          125 RVASRAVRTFHGHE--GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLF  201 (267)
Q Consensus       125 ~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  201 (267)
                      ..... +.....+.  ..+.++...  +++++.|...+.+.++..+. .+.+..+....   ....+.++.|-++++.++
T Consensus       115 ~~~~~-l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~---~~~~v~~~~~l~d~~~~i  188 (321)
T PF03178_consen  115 DNSKT-LLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDY---QPRWVTAAEFLVDEDTII  188 (321)
T ss_dssp             ETTSS-EEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEES---S-BEEEEEEEE-SSSEEE
T ss_pred             cCccc-chhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecC---CCccEEEEEEecCCcEEE
Confidence            75441 22221222  245555544  66999998888888875543 23233333222   234688888876667999


Q ss_pred             EEEeCCeEEEEeCCcc-------c-eeeecccccCCccceEEEE---EECC--CCC------eEEEeECCCcEEEE
Q 024451          202 AGYSNGDCYVWDTLLA-------K-VVLNLGSLQNSHEGRITCL---GLSA--DGS------ALCTGSWDTNLKIW  258 (267)
Q Consensus       202 ~g~~dg~i~i~d~~~~-------~-~~~~~~~~~~~~~~~v~~~---~~~p--~~~------~l~sgs~dg~i~~w  258 (267)
                      ++..+|.+.++.....       . .+.....+  ...+.|+++   .+.|  .+.      .++-++.+|.|-..
T Consensus       189 ~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f--~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  189 VGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF--HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE--E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEcCCCeEEEEEECCCCcccccccccceeEEEE--ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            9999999999875421       1 11111111  234567777   5556  222      37778889988743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.28  E-value=0.028  Score=52.08  Aligned_cols=163  Identities=15%  Similarity=0.219  Sum_probs=100.5

Q ss_pred             cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeC----CCC
Q 024451           95 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI----RTG  170 (267)
Q Consensus        95 ~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~----~~~  170 (267)
                      ..|.++.+... ...++.+..+|.|.+-|....  .......-...|.+++|+||++.++....++++-+-.-    -..
T Consensus        69 ~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   69 DEIVSVQFLAD-TNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             cceEEEEEecc-cceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence            67888888854 344566777888888876532  22222223467999999999999988888777765321    111


Q ss_pred             eee-----------EEEEee-----cCCC-------------------CCCcEEEEEEccCCCEEEEEE----eC-CeEE
Q 024451          171 HQL-----------QVYYQQ-----HGEN-------------------EIPHVTSIAFSISGRLLFAGY----SN-GDCY  210 (267)
Q Consensus       171 ~~~-----------~~~~~~-----~~~~-------------------~~~~v~~~~~s~~~~~l~~g~----~d-g~i~  210 (267)
                      +.+           ..-+..     ++..                   ....-++++|--+|.++++..    .+ +.++
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence            111           000000     0000                   001124589999999998843    23 7999


Q ss_pred             EEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC---CCcEEEEecCceEe
Q 024451          211 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW---DTNLKIWAFGGYRR  265 (267)
Q Consensus       211 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~---dg~i~~w~~~~~~~  265 (267)
                      +||.+  ..+.....   .-.+.=.+++|-|.|..+|+-..   |+.|.+|--+|+++
T Consensus       226 V~drE--g~Lns~se---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h  278 (1265)
T KOG1920|consen  226 VYDRE--GALNSTSE---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH  278 (1265)
T ss_pred             Eeccc--chhhcccC---cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc
Confidence            99965  22222221   12223367999999999987433   66799998888875

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.0023  Score=58.14  Aligned_cols=104  Identities=27%  Similarity=0.364  Sum_probs=71.6

Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccC
Q 024451          149 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN  228 (267)
Q Consensus       149 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~  228 (267)
                      .+..++.|+..|.+-..|....-. .   -..+.....+|++++|+.+|+.++.|..+|.|.+||..+.+....+.....
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~---~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLG-P---LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccc-h---hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence            345678888888999888764311 1   122334456899999999999999999999999999988777655533333


Q ss_pred             CccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          229 SHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       229 ~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      .+.+.+. +.+..++..+.++...|.  +|.
T Consensus       174 p~t~vi~-v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  174 PVTGVIF-VGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             ccceEEE-EEEeCCCcEEEEccCCCc--eEE
Confidence            4444444 344444557777777776  554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.20  E-value=0.11  Score=44.04  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=27.4

Q ss_pred             CcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc
Q 024451          186 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  218 (267)
Q Consensus       186 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~  218 (267)
                      .++..++.||+++++|.-..+|.+.+.+....+
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~  249 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE  249 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence            468999999999999998889999888754433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.20  E-value=0.035  Score=47.26  Aligned_cols=138  Identities=15%  Similarity=0.178  Sum_probs=73.7

Q ss_pred             ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEE-eCCCCeeeE
Q 024451           96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF-DIRTGHQLQ  174 (267)
Q Consensus        96 ~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw-d~~~~~~~~  174 (267)
                      ...++.++| +++.++. +.||.-.++.....+   ..   ..+....+.|.+.+ .+|+--..++|+|+ +++.. ...
T Consensus        34 ~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r---~k---~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~-~~k  103 (443)
T PF04053_consen   34 YPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWR---NK---AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNE-VVK  103 (443)
T ss_dssp             --SEEEE-T-TSSEEEE-EETTEEEEEETTTTE---EE---EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE--TT-
T ss_pred             CCeeEEECC-CCCEEEE-EcCCEEEEEEccCCc---cc---ccCceeEEEEecCc-cEEEEECCCeEEEEEcCccc-cce
Confidence            356777886 4565555 667777777633111   11   12456778998854 56666668899996 33221 111


Q ss_pred             EEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCc
Q 024451          175 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN  254 (267)
Q Consensus       175 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~  254 (267)
                      .+..   .   ..+..+ |.  |..|...+ ++.|.+||+.+.+.+..+.      -.+|..+.|+++|+++|..+.+ .
T Consensus       104 ~i~~---~---~~~~~I-f~--G~LL~~~~-~~~i~~yDw~~~~~i~~i~------v~~vk~V~Ws~~g~~val~t~~-~  166 (443)
T PF04053_consen  104 SIKL---P---FSVEKI-FG--GNLLGVKS-SDFICFYDWETGKLIRRID------VSAVKYVIWSDDGELVALVTKD-S  166 (443)
T ss_dssp             -------S---S-EEEE-E---SSSEEEEE-TTEEEEE-TTT--EEEEES------S-E-EEEEE-TTSSEEEEE-S--S
T ss_pred             EEcC---C---cccceE-Ec--CcEEEEEC-CCCEEEEEhhHcceeeEEe------cCCCcEEEEECCCCEEEEEeCC-e
Confidence            1110   0   113333 22  67666664 4589999999998887652      2248899999999999988755 6


Q ss_pred             EEEEec
Q 024451          255 LKIWAF  260 (267)
Q Consensus       255 i~~w~~  260 (267)
                      +.|+++
T Consensus       167 i~il~~  172 (443)
T PF04053_consen  167 IYILKY  172 (443)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.15  E-value=0.075  Score=41.13  Aligned_cols=106  Identities=18%  Similarity=0.249  Sum_probs=67.6

Q ss_pred             EEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcE
Q 024451          109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  188 (267)
Q Consensus       109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v  188 (267)
                      ++..|+-.+.+.--|...++...+.+.+  ..+.+-+.- -|++++.|+..|.+-+.+.+++.+...+.....    -.+
T Consensus        25 ~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~----vk~   97 (354)
T KOG4649|consen   25 LVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET----VKV   97 (354)
T ss_pred             EEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh----hcc
Confidence            3444454555555554433322222222  233332222 577899999999999999999987766543221    122


Q ss_pred             EEEEEccCCCEEEEEEeCCeEEEEeCCccceeee
Q 024451          189 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN  222 (267)
Q Consensus       189 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~  222 (267)
                      . ...++++..+..|+.|++++..|.++...+.+
T Consensus        98 ~-a~~d~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen   98 R-AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             c-eEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence            2 23578999999999999999999988776654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.12  E-value=0.14  Score=43.70  Aligned_cols=213  Identities=12%  Similarity=0.124  Sum_probs=103.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEE-eCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW-DITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iw-d~~~~~   80 (267)
                      .+.++|+|+.++. +.||.-.+|....         ...   ...+.-....|.+.+  .+|.-...++|+|+ ++....
T Consensus        37 ~ls~npngr~v~V-~g~geY~iyt~~~---------~r~---k~~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~  101 (443)
T PF04053_consen   37 SLSHNPNGRFVLV-CGDGEYEIYTALA---------WRN---KAFGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV  101 (443)
T ss_dssp             EEEE-TTSSEEEE-EETTEEEEEETTT---------TEE---EEEEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T
T ss_pred             eEEECCCCCEEEE-EcCCEEEEEEccC---------Ccc---cccCceeEEEEecCc--cEEEEECCCeEEEEEcCcccc
Confidence            4678999998887 6688888887321         111   112344456777743  36666668889996 332211


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                       ...+.    ...  .+..  +.+  +.+++..+. +.|.+||..+ .+.++.+..  .+|..+.|++++++++..+.+ 
T Consensus       102 -~k~i~----~~~--~~~~--If~--G~LL~~~~~-~~i~~yDw~~-~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~-  165 (443)
T PF04053_consen  102 -VKSIK----LPF--SVEK--IFG--GNLLGVKSS-DFICFYDWET-GKLIRRIDV--SAVKYVIWSDDGELVALVTKD-  165 (443)
T ss_dssp             -T---------SS---EEE--EE---SSSEEEEET-TEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred             -ceEEc----CCc--ccce--EEc--CcEEEEECC-CCEEEEEhhH-cceeeEEec--CCCcEEEEECCCCEEEEEeCC-
Confidence             11111    111  1122  221  445555444 4899999975 456666653  348999999999999988866 


Q ss_pred             cEEEEeCCCC-----------eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCC
Q 024451          161 TCRLFDIRTG-----------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS  229 (267)
Q Consensus       161 ~i~iwd~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~  229 (267)
                      .+.|.+.+..           ....... +.    ...|.+.+|.-+ -++.+. .. .++-+-  .++.. .+.    .
T Consensus       166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~-E~----~~~IkSg~W~~d-~fiYtT-~~-~lkYl~--~Ge~~-~i~----~  230 (443)
T PF04053_consen  166 SIYILKYNLEAVAAIPEEGVEDAFELIH-EI----SERIKSGCWVED-CFIYTT-SN-HLKYLV--NGETG-IIA----H  230 (443)
T ss_dssp             SEEEEEE-HHHHHHBTTTB-GGGEEEEE-EE-----S--SEEEEETT-EEEEE--TT-EEEEEE--TTEEE-EEE----E
T ss_pred             eEEEEEecchhcccccccCchhceEEEE-Ee----cceeEEEEEEcC-EEEEEc-CC-eEEEEE--cCCcc-eEE----E
Confidence            6666654322           0111111 10    124677778765 333333 23 554432  22111 111    1


Q ss_pred             ccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          230 HEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      -..++.=+...|..+.+.....|+.+..+.+
T Consensus       231 ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  231 LDKPLYLLGYLPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             -SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred             cCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence            2345666777787777887888888888764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.12  E-value=0.13  Score=43.25  Aligned_cols=210  Identities=13%  Similarity=0.131  Sum_probs=108.4

Q ss_pred             eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE------E--------------------------------eCCcc
Q 024451           48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS------V--------------------------------FGGEF   89 (267)
Q Consensus        48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~------~--------------------------------~~~~~   89 (267)
                      .|+.+.|.++.. .|+.|...|.|.||.........      .                                .+...
T Consensus         3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            578888988654 58888889998888653211000      0                                00001


Q ss_pred             ccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE--eec------cccceeEEEEec-----CC---CEE
Q 024451           90 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT--FHG------HEGDVNTVKFFP-----DG---NRF  153 (267)
Q Consensus        90 ~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~--~~~------~~~~i~~~~~~~-----~~---~~l  153 (267)
                      .....+.|.+++.+  +-.+++.|..+|.+.|.|+|.. ..+..  +..      ....+.++.|.-     |+   -.+
T Consensus        82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGP-avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGP-AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTT-EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCC-eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            12346778888775  4457889999999999999743 22221  111      123467777752     22   357


Q ss_pred             EEeeCCCcEEEEeCCC--CeeeE-EEEeecCCCCCCcEEEEE-EccC--------------------CCEEEEEEeCCeE
Q 024451          154 GTGSDDGTCRLFDIRT--GHQLQ-VYYQQHGENEIPHVTSIA-FSIS--------------------GRLLFAGYSNGDC  209 (267)
Q Consensus       154 ~~~~~d~~i~iwd~~~--~~~~~-~~~~~~~~~~~~~v~~~~-~s~~--------------------~~~l~~g~~dg~i  209 (267)
                      .+|...|.+.+|.+..  +.... .+.... .....++..+. |+.+                    -+.++...++..+
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i  237 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI  237 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence            8889999999998752  11111 111111 11223344333 3211                    1224444567889


Q ss_pred             EEEeCCccceeeecccccCCccceEEEEEE-----CCCCCeEEEeECCCcEEEEecCceEec
Q 024451          210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGL-----SADGSALCTGSWDTNLKIWAFGGYRRV  266 (267)
Q Consensus       210 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-----~p~~~~l~sgs~dg~i~~w~~~~~~~~  266 (267)
                      +++.....+...+..    ...-....+.+     ...+..|++-..+|.|++|.+=+|+.+
T Consensus       238 rv~~~~~~k~~~K~~----~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  238 RVFKPPKSKGAHKSF----DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             EEE-TT---EEEEE-----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred             EEEeCCCCcccceee----ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence            999987766554432    11112233344     235678888889999999998777653

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.98  E-value=0.051  Score=36.34  Aligned_cols=93  Identities=25%  Similarity=0.371  Sum_probs=59.8

Q ss_pred             CCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCC
Q 024451          105 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE  184 (267)
Q Consensus       105 ~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  184 (267)
                      .....|+.|+.|..||+|+-.   ..+..+.. ...|.++.-... ..|+-+-.+|+|-+|+-..  .+.....   .  
T Consensus        13 dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWRiKS---K--   80 (111)
T PF14783_consen   13 DGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWRIKS---K--   80 (111)
T ss_pred             CCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeeeecc---C--
Confidence            344678999999999999743   34555543 456777776554 6799999999999997532  2222211   1  


Q ss_pred             CCcEEEEE-EccCC---CEEEEEEeCCeEE
Q 024451          185 IPHVTSIA-FSISG---RLLFAGYSNGDCY  210 (267)
Q Consensus       185 ~~~v~~~~-~s~~~---~~l~~g~~dg~i~  210 (267)
                       ..+.++. ++.++   .-|++|.++|.|-
T Consensus        81 -~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   81 -NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             1244444 44443   3688999998774

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.98  E-value=0.003  Score=47.53  Aligned_cols=106  Identities=10%  Similarity=0.129  Sum_probs=60.3

Q ss_pred             CeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc
Q 024451           59 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE  138 (267)
Q Consensus        59 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~  138 (267)
                      ...++.|+.||.|.+|+....-...-   .. ..-...|.+.......+.+..+++.|+.|+.|+.+. .+.......|+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d---~~-~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~  144 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSD---RV-CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHN  144 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHH---hh-hcccccceeccccccccceeEEeccCCceeeecccc-Cceeeeecccc
Confidence            34688999999999998762110000   00 011122322222222334778899999999999864 44444444565


Q ss_pred             -cceeEEEEecCCCEEEEe--eCCCcEEEEeCCC
Q 024451          139 -GDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRT  169 (267)
Q Consensus       139 -~~i~~~~~~~~~~~l~~~--~~d~~i~iwd~~~  169 (267)
                       .++..+.....+..++.+  |.|..++.|++..
T Consensus       145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence             444445444455555555  6666666666653

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=0.19  Score=42.17  Aligned_cols=199  Identities=14%  Similarity=0.129  Sum_probs=120.4

Q ss_pred             EEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEec--CCCeEEEEeCCCcc
Q 024451           51 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVAS  128 (267)
Q Consensus        51 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~--~d~~i~iwd~~~~~  128 (267)
                      .++.++.+.+..+....++.|.+.|..+........    .+.  ....+.+++....++++-.  .++.+.+.|.....
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~----vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP----VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee----ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence            456666666556666667899999977655444332    112  3456777777767777766  46888888876433


Q ss_pred             cceEEeeccccceeEEEEecCCCEEEEe-eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-
Q 024451          129 RAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-  206 (267)
Q Consensus       129 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-  206 (267)
                       .......-..+ ..+++.|+|+.+... ..++.+.+.|........ -..............+.+++++..+.+.... 
T Consensus       152 -~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         152 -VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             -EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence             33333222234 789999999865544 578999999977654331 1000001111234677899999977665443 


Q ss_pred             --CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC-CCcEEEEecC
Q 024451          207 --GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKIWAFG  261 (267)
Q Consensus       207 --g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-dg~i~~w~~~  261 (267)
                        +.+...|.............  .-. .-..++++|+|+++.+... .+.+.+-+..
T Consensus       229 ~~~~v~~id~~~~~v~~~~~~~--~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~  283 (381)
T COG3391         229 GSNNVLKIDTATGNVTATDLPV--GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA  283 (381)
T ss_pred             CCceEEEEeCCCceEEEecccc--ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence              58888998776655431111  111 2345788999998877633 3556555543

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.81  E-value=0.06  Score=47.22  Aligned_cols=95  Identities=17%  Similarity=0.074  Sum_probs=63.4

Q ss_pred             CCeEEEEeCCC----C-eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-----------ce
Q 024451           68 DQTCVLWDITT----G-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------AV  131 (267)
Q Consensus        68 d~~v~iwd~~~----~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-----------~~  131 (267)
                      ++.|.+.|..+    + .....++      -.....-+.++|....+++++..+.++.|.|+.....           ..
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP------VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv  368 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP------VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV  368 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE------CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE
Confidence            67899999887    2 2222222      1233456778887777777888899999999864321           11


Q ss_pred             EEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCC
Q 024451          132 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  169 (267)
Q Consensus       132 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~  169 (267)
                      ....- ...-...+|.++|+...+..-|..|-.||+..
T Consensus       369 aevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        369 AEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             Eeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            11111 11123568889999899999999999999875

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.77  E-value=0.28  Score=41.64  Aligned_cols=170  Identities=15%  Similarity=0.105  Sum_probs=84.5

Q ss_pred             eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee--cccccee-----
Q 024451           70 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVN-----  142 (267)
Q Consensus        70 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~i~-----  142 (267)
                      .|+||+.. |..+..+..    .+ +.+..+.|...  ..++.-..||.++++|+.. .. ...+.  .....|.     
T Consensus        62 ~I~iys~s-G~ll~~i~w----~~-~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G-~~-~fsl~~~i~~~~v~e~~i~  131 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPW----DS-GRIVGMGWTDD--EELVVVQSDGTVRVYDLFG-EF-QFSLGEEIEEEKVLECRIF  131 (410)
T ss_pred             EEEEECCC-CCEeEEEEE----CC-CCEEEEEECCC--CeEEEEEcCCEEEEEeCCC-ce-eechhhhccccCccccccc
Confidence            58888875 333443321    12 68889999753  3456778999999999852 22 11110  0111222     


Q ss_pred             EEEEecCCCEEEEeeCCCcEEEEeCCCCe-eeEEEEeecCCCC----CCcEEE-EEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451          143 TVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENE----IPHVTS-IAFSISGRLLFAGYSNGDCYVWDTLL  216 (267)
Q Consensus       143 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~----~~~v~~-~~~s~~~~~l~~g~~dg~i~i~d~~~  216 (267)
                      ...+..+|  ++.-..++.+.+..--... .............    ...... ..++.+....+....++.+++.+...
T Consensus       132 ~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~  209 (410)
T PF04841_consen  132 AIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS  209 (410)
T ss_pred             ccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence            22333344  2222333443333211111 0001100000000    000011 23444555555555556666444322


Q ss_pred             cceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          217 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       217 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      .+.        ....+++..+++||+|+++|.-..+|.+.+..
T Consensus       210 ~~~--------i~~~~~i~~iavSpng~~iAl~t~~g~l~v~s  244 (410)
T PF04841_consen  210 FKQ--------IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVS  244 (410)
T ss_pred             ccc--------ccCCCCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence            111        11245899999999999999999999988875

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.73  E-value=0.0063  Score=33.97  Aligned_cols=33  Identities=15%  Similarity=0.396  Sum_probs=29.0

Q ss_pred             ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCe
Q 024451          138 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  171 (267)
Q Consensus       138 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  171 (267)
                      ...|.++.|+|..+++|.+..||.|.++.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            356899999999999999999999999998 443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.72  E-value=0.2  Score=39.21  Aligned_cols=170  Identities=11%  Similarity=0.082  Sum_probs=94.1

Q ss_pred             CCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc-ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q 024451           92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  170 (267)
Q Consensus        92 ~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  170 (267)
                      +-...+..+++.+..+.++++....+.|...+..  .+.++.+.-. .+....+++..++.++++--.++.+.++++...
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD   96 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence            3344588899998888899999999999888864  3455554322 355788999877766666556889999888432


Q ss_pred             ee---e---EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc---cceeee--cccc--cCCccceEEEE
Q 024451          171 HQ---L---QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL---AKVVLN--LGSL--QNSHEGRITCL  237 (267)
Q Consensus       171 ~~---~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~---~~~~~~--~~~~--~~~~~~~v~~~  237 (267)
                      ..   .   ..+.-..........-.++|++.++.|+++-...-..+|....   ...+..  ...+  .......+.++
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l  176 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL  176 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence            11   1   1111111111223578999999988888887777666766543   111100  0000  11233457889


Q ss_pred             EECCC-CCeEEEeECCCcEEEEecCce
Q 024451          238 GLSAD-GSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       238 ~~~p~-~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      +++|. +.+++.......+..++..|.
T Consensus       177 ~~~p~t~~lliLS~es~~l~~~d~~G~  203 (248)
T PF06977_consen  177 SYDPRTGHLLILSDESRLLLELDRQGR  203 (248)
T ss_dssp             EEETTTTEEEEEETTTTEEEEE-TT--
T ss_pred             EEcCCCCeEEEEECCCCeEEEECCCCC
Confidence            99986 456666666777777776554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.012  Score=53.78  Aligned_cols=102  Identities=22%  Similarity=0.322  Sum_probs=70.2

Q ss_pred             EEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcE
Q 024451          109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV  188 (267)
Q Consensus       109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v  188 (267)
                      .++.|+..|.+-..|....-.+..+-..-.++|.+++|+.+|..++.|-.+|.|.+||...++....+.. +...+. .+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e-~~ap~t-~v  178 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE-HGAPVT-GV  178 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee-cCCccc-eE
Confidence            4667778888888877532222111112247899999999999999999999999999998887766544 222222 34


Q ss_pred             EEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451          189 TSIAFSISGRLLFAGYSNGDCYVWDT  214 (267)
Q Consensus       189 ~~~~~s~~~~~l~~g~~dg~i~i~d~  214 (267)
                      --+.+..++..++++...|.  +|.+
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEEE
Confidence            44555666678888888886  5553

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.57  E-value=0.23  Score=44.09  Aligned_cols=158  Identities=15%  Similarity=0.118  Sum_probs=80.3

Q ss_pred             ceEEEEEeCCCCeEEEEec-----CCC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC-CcEEEEeC
Q 024451           96 DVLSVSISGSNSRMFVSGS-----CDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-GTCRLFDI  167 (267)
Q Consensus        96 ~i~~~~~~~~~~~~~~s~~-----~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~iwd~  167 (267)
                      .+.+..+++...+...+..     .|.  .|.+++..  ........+  .....-.|+|+|+.+++.... ...++.+.
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4567777875554433331     243  44444532  222222222  237788999998887776543 22333322


Q ss_pred             CCCeeeEEEEeecCC---CCCCcEEEEEEccCCCEEEEEEeCCeEEE---EeCCccc-eeeecccccCCccceEEEEEEC
Q 024451          168 RTGHQLQVYYQQHGE---NEIPHVTSIAFSISGRLLFAGYSNGDCYV---WDTLLAK-VVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       168 ~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~g~~dg~i~i---~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      ....++....-....   .....|..+.|||||..++.-. +|.|++   -....++ .+.....+...-...+..+.|.
T Consensus       427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~  505 (591)
T PRK13616        427 PATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR  505 (591)
T ss_pred             CCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence            111111111100000   1123589999999999888765 577777   3322222 1111111112223345789999


Q ss_pred             CCCCeEEEeECCCcEEEEe
Q 024451          241 ADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       241 p~~~~l~sgs~dg~i~~w~  259 (267)
                      +++.++ .+..++...+|.
T Consensus       506 ~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        506 TGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             cCCEEE-EEecCCCCceEE
Confidence            988855 555555555553

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.25  E-value=0.24  Score=39.92  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=58.7

Q ss_pred             ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC-Cc
Q 024451          138 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT-LL  216 (267)
Q Consensus       138 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~-~~  216 (267)
                      .+.+..+.-.++|++++++..-.-..-||.-...     +..+.......+.++.|+|++...+++ ..|.|++=+. ..
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-----w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-----WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD  217 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS------EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCcc-----ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence            4567888888999999888777777788754211     111222233569999999998876655 7888888762 22


Q ss_pred             cceeeecccccCCccceEEEEEECCCCCeEEEeECC
Q 024451          217 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  252 (267)
Q Consensus       217 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d  252 (267)
                      .+.-.........-.-.+..+++.++++..|+|+..
T Consensus       218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             ccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            211111000011222348899999999888877654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.18  E-value=0.6  Score=38.75  Aligned_cols=234  Identities=15%  Similarity=0.178  Sum_probs=107.1

Q ss_pred             CCCCCeEEEc---------cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC
Q 024451            6 SPTGQSVACG---------GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI   76 (267)
Q Consensus         6 ~~~g~~l~~~---------~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~   76 (267)
                      |||+++++..         +..+...+||+....        ...+......+....|+|++. .++-. .++.|.+++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~--------~~~l~~~~~~~~~~~~sP~g~-~~~~v-~~~nly~~~~   70 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE--------ITPLTPPPPKLQDAKWSPDGK-YIAFV-RDNNLYLRDL   70 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE--------EEESS-EETTBSEEEE-SSST-EEEEE-ETTEEEEESS
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc--------eEECcCCccccccceeecCCC-eeEEE-ecCceEEEEC
Confidence            5788877763         234567788876521        111111245677789999865 44444 4678999998


Q ss_pred             CCCeeEEEeC-Ccc--ccCC-----c----cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecccc---ce
Q 024451           77 TTGLRTSVFG-GEF--QSGH-----T----ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG---DV  141 (267)
Q Consensus        77 ~~~~~~~~~~-~~~--~~~~-----~----~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~i  141 (267)
                      .++.....-. +..  ..|-     +    +.-..+-|+|.+.+++...-.+..|+.+.+.       .......   .+
T Consensus        71 ~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~-------~~~~~~~~yp~~  143 (353)
T PF00930_consen   71 ATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP-------DYSPPDSQYPEV  143 (353)
T ss_dssp             TTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE-------EESSSTESS-EE
T ss_pred             CCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee-------ccCCccccCCcc
Confidence            7764433211 100  0000     0    1123466776544333222233333333221       1111111   34


Q ss_pred             eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC-----eEEEEeCCc
Q 024451          142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLL  216 (267)
Q Consensus       142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-----~i~i~d~~~  216 (267)
                      ..+.+-..|..-.    .-.+.|+|+.+++....-...........+..+.|++++..++....++     .+.++|..+
T Consensus       144 ~~~~YPk~G~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t  219 (353)
T PF00930_consen  144 ESIRYPKAGDPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST  219 (353)
T ss_dssp             EEEE--BTTS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT
T ss_pred             cccccCCCCCcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC
Confidence            5555533333221    1157778888776542221110112234688999999999555544432     566677655


Q ss_pred             cceeeecccccCCccceEEEEEEC-CCCC-eEEEeECCCcEEEEec
Q 024451          217 AKVVLNLGSLQNSHEGRITCLGLS-ADGS-ALCTGSWDTNLKIWAF  260 (267)
Q Consensus       217 ~~~~~~~~~~~~~~~~~v~~~~~~-p~~~-~l~sgs~dg~i~~w~~  260 (267)
                      ++............-..-....+. +++. +|.....||.-.||.+
T Consensus       220 g~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~  265 (353)
T PF00930_consen  220 GETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY  265 (353)
T ss_dssp             TTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred             CceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence            433211111111111111234443 5544 4545557787666643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PHA02713 hypothetical protein; Provisional

Probab=96.15  E-value=0.87  Score=40.37  Aligned_cols=64  Identities=5%  Similarity=0.003  Sum_probs=32.5

Q ss_pred             CCCEEEEeeCC------CcEEEEeCCC-CeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC--eEEEEeCCcc
Q 024451          149 DGNRFGTGSDD------GTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--DCYVWDTLLA  217 (267)
Q Consensus       149 ~~~~l~~~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg--~i~i~d~~~~  217 (267)
                      +++..+.||.+      ..+..||.++ .+-...  .. ..........+  .-++.+.++|+.+|  .+..||..+.
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~--~~-m~~~r~~~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI--TT-TESRLSALHTI--LHDNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc--cc-cCcccccceeE--EECCEEEEEeeecceeehhhcCcccc
Confidence            46666777654      2467788876 332110  00 00011111222  23677888888777  5566665543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.89  E-value=0.76  Score=37.46  Aligned_cols=166  Identities=17%  Similarity=0.222  Sum_probs=85.7

Q ss_pred             EEEecCCCeeEEEeeCCCeEEEEeCCC-CeeEEEeCCccccCCccceE-EEEEeCCCCeEEEEecCCCeEEEEeCCCccc
Q 024451           52 CQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASR  129 (267)
Q Consensus        52 ~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~  129 (267)
                      ...-|.+.+-+.+-+.||++.-..+.. ++........+. ...+.+. .-.+....+++ .--+.+|.|+--|+.....
T Consensus       140 ~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~-~~~dp~f~~~~~~~~~~~~-~F~Sy~G~v~~~dlsg~~~  217 (342)
T PF06433_consen  140 WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD-PDDDPLFEHPAYSRDGGRL-YFVSYEGNVYSADLSGDSA  217 (342)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESS-TTTS-B-S--EEETTTTEE-EEEBTTSEEEEEEETTSSE
T ss_pred             EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccC-CCCcccccccceECCCCeE-EEEecCCEEEEEeccCCcc
Confidence            333455545688889999998888763 322211100111 1122222 22233233333 2356677777766643221


Q ss_pred             -ceEEee---c-------cccceeEEEEecCCCEEEEe---eCCC-------cEEEEeCCCCeeeEEEEeecCCCCCCcE
Q 024451          130 -AVRTFH---G-------HEGDVNTVKFFPDGNRFGTG---SDDG-------TCRLFDIRTGHQLQVYYQQHGENEIPHV  188 (267)
Q Consensus       130 -~~~~~~---~-------~~~~i~~~~~~~~~~~l~~~---~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~v  188 (267)
                       ......   .       -.+.-.-+++++..+.|...   +.++       .|.++|+.+++.+..+.-.+      ++
T Consensus       218 ~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~------~~  291 (342)
T PF06433_consen  218 KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH------PI  291 (342)
T ss_dssp             EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE------EE
T ss_pred             cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC------cc
Confidence             011110   0       01122347777765554432   2222       48999999988876654322      35


Q ss_pred             EEEEEccCCC-EEEEEE-eCCeEEEEeCCccceeeeccc
Q 024451          189 TSIAFSISGR-LLFAGY-SNGDCYVWDTLLAKVVLNLGS  225 (267)
Q Consensus       189 ~~~~~s~~~~-~l~~g~-~dg~i~i~d~~~~~~~~~~~~  225 (267)
                      .++..+.+.. .|++.+ .++.|.+||..+++.+..+..
T Consensus       292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            6888887765 565544 578999999999988776643

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.84  E-value=0.58  Score=41.57  Aligned_cols=110  Identities=14%  Similarity=0.131  Sum_probs=65.4

Q ss_pred             eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEc--cCCCEEEEEEeCCeEEEEeCCccc-
Q 024451          142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS--ISGRLLFAGYSNGDCYVWDTLLAK-  218 (267)
Q Consensus       142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~g~~dg~i~i~d~~~~~-  218 (267)
                      .-+.-+.-++..++-+....+.|||.+.+...  +...  ..+...|..+.|.  |+++.+++-+-.+.|.+|...... 
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE--~~~~--f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLE--YEES--FSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEE--Eeee--ecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            33444444555455455568999999876522  1111  1234568899885  788888877778888898643211 


Q ss_pred             --------eeeecccccCCcc-ceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          219 --------VVLNLGSLQNSHE-GRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       219 --------~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                              .+..+. + ..|. .+|....|.++|.+++.+  ++.+.|++
T Consensus       109 ~~~~p~w~~i~~i~-i-~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d  154 (631)
T PF12234_consen  109 TNKGPSWAPIRKID-I-SSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD  154 (631)
T ss_pred             hcCCcccceeEEEE-e-ecCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence                    111110 1 1122 468889999998776643  35666664

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02713 hypothetical protein; Provisional

Probab=95.83  E-value=1.2  Score=39.44  Aligned_cols=181  Identities=7%  Similarity=0.031  Sum_probs=84.4

Q ss_pred             eeEEEeeCC------CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-----eEEEEeCCCcc
Q 024451           60 THLITSSGD------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTRVAS  128 (267)
Q Consensus        60 ~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-----~i~iwd~~~~~  128 (267)
                      ...+.||.+      ..+..||..+..-...-+  ..  ....-..++..  ++++++.||.++     .+..||.... 
T Consensus       305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~--m~--~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~-  377 (557)
T PHA02713        305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPP--MI--KNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDD-  377 (557)
T ss_pred             EEEEEcCCCCCCCccceEEEEECCCCeEeeCCC--Cc--chhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCC-
Confidence            456666653      347778877654322111  10  11111222232  467888888764     3677887632 


Q ss_pred             cceEEeeccccce--eEEEEecCCCEEEEeeCCC-----------------------cEEEEeCCCCeeeEEEEeecCCC
Q 024451          129 RAVRTFHGHEGDV--NTVKFFPDGNRFGTGSDDG-----------------------TCRLFDIRTGHQLQVYYQQHGEN  183 (267)
Q Consensus       129 ~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~  183 (267)
                       .......-..+.  .++. .-+++..+.||.++                       .+..||+++.+-..     ....
T Consensus       378 -~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~-----v~~m  450 (557)
T PHA02713        378 -KWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET-----LPNF  450 (557)
T ss_pred             -eEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee-----cCCC
Confidence             122221111111  1122 22567777777553                       46678877653211     1111


Q ss_pred             CCCcEEEEEEccCCCEEEEEEeC------CeEEEEeCCc-c--ceeeecccccCCccceEEEEEECCCCCeEEEeECCC-
Q 024451          184 EIPHVTSIAFSISGRLLFAGYSN------GDCYVWDTLL-A--KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-  253 (267)
Q Consensus       184 ~~~~v~~~~~s~~~~~l~~g~~d------g~i~i~d~~~-~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg-  253 (267)
                      ..+........-++.+.+.|+.+      ..+..||..+ .  ..+..+..    .....-.+.  -+|++.+.|+.|+ 
T Consensus       451 ~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~----~r~~~~~~~--~~~~iyv~Gg~~~~  524 (557)
T PHA02713        451 WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES----RLSALHTIL--HDNTIMMLHCYESY  524 (557)
T ss_pred             CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc----ccccceeEE--ECCEEEEEeeecce
Confidence            11111111123356666666543      2467788765 2  22222211    111111122  2688889999888 


Q ss_pred             -cEEEEec
Q 024451          254 -NLKIWAF  260 (267)
Q Consensus       254 -~i~~w~~  260 (267)
                       .+-.|+.
T Consensus       525 ~~~e~yd~  532 (557)
T PHA02713        525 MLQDTFNV  532 (557)
T ss_pred             eehhhcCc
Confidence             4444443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.73  E-value=0.3  Score=41.77  Aligned_cols=116  Identities=16%  Similarity=0.194  Sum_probs=70.4

Q ss_pred             EEEEEEecCCCe------eEEEeeCCCeEEEEeCCCCeeEEEeCCcccc-CCccceEEEEEeCCCCeEEEEecCCCeEEE
Q 024451           49 VSCCQYVPDEDT------HLITSSGDQTCVLWDITTGLRTSVFGGEFQS-GHTADVLSVSISGSNSRMFVSGSCDSTARL  121 (267)
Q Consensus        49 v~~~~~~~~~~~------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~s~~~d~~i~i  121 (267)
                      |.-+.+.|+...      .=+.|=.|+.|.-||.+-+........+..+ .......|.+.  .....++.|+.+|.||+
T Consensus       378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aT--T~sG~IvvgS~~GdIRL  455 (644)
T KOG2395|consen  378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFAT--TESGYIVVGSLKGDIRL  455 (644)
T ss_pred             cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeee--cCCceEEEeecCCcEEe
Confidence            556666664321      1123556888999998743221111011111 11222334433  34457899999999999


Q ss_pred             EeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCC
Q 024451          122 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  168 (267)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  168 (267)
                      ||- ........+.+-..+|.-+..+.+|+.+++.+ +..+.+.++.
T Consensus       456 Ydr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  456 YDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            996 34444455667788999999999999887655 5577777754

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.67  E-value=0.83  Score=36.27  Aligned_cols=233  Identities=12%  Similarity=0.164  Sum_probs=116.8

Q ss_pred             CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451            6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF   85 (267)
Q Consensus         6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~   85 (267)
                      ...++.|+.|..+| +.+|+...+..      ..+.  .+...|..+...|+-+.+++-  .|+.+.++++..-......
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~------~~~i--~~~~~I~ql~vl~~~~~llvL--sd~~l~~~~L~~l~~~~~~   72 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSK------PTRI--LKLSSITQLSVLPELNLLLVL--SDGQLYVYDLDSLEPVSTS   72 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCcc------ceeE--eecceEEEEEEecccCEEEEE--cCCccEEEEchhhcccccc
Confidence            34678899998888 88888832111      1111  233348888888865443333  3599999998753322210


Q ss_pred             C-----C----ccccCCccceEEEE-EeCCCCeEEEEecCCCeEEEEeCCCcc----cceEEeeccccceeEEEEecCCC
Q 024451           86 G-----G----EFQSGHTADVLSVS-ISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFHGHEGDVNTVKFFPDGN  151 (267)
Q Consensus        86 ~-----~----~~~~~~~~~i~~~~-~~~~~~~~~~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~~  151 (267)
                      .     .    .........+...+ .....+...+.......|.+|......    +..+.+. -...+.++.|.  ++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~  149 (275)
T PF00780_consen   73 APLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GN  149 (275)
T ss_pred             ccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CC
Confidence            0     0    00011222344433 112223333445555588888765421    2333333 23678888988  45


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEEeecCC-------CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc
Q 024451          152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG  224 (267)
Q Consensus       152 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~  224 (267)
                      .++.+..+ ...+.|+.++.....+......       ....++..+... ++.+|++-  +..-.+.|. .++... ..
T Consensus       150 ~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r-~~  223 (275)
T PF00780_consen  150 KICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSR-KS  223 (275)
T ss_pred             EEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCc-cc
Confidence            67776654 5777898866544332111100       011223333333 45666543  233333443 222221 00


Q ss_pred             cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          225 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       225 ~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      .+  .......++++.  ..||+.-+ ++.|.||++...
T Consensus       224 ~i--~W~~~p~~~~~~--~pyli~~~-~~~iEV~~~~~~  257 (275)
T PF00780_consen  224 TI--QWSSAPQSVAYS--SPYLIAFS-SNSIEVRSLETG  257 (275)
T ss_pred             EE--EcCCchhEEEEE--CCEEEEEC-CCEEEEEECcCC
Confidence            11  123344556654  34776554 466999987543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.63  E-value=0.68  Score=39.31  Aligned_cols=101  Identities=25%  Similarity=0.291  Sum_probs=59.2

Q ss_pred             eEEEEecCCCEEEEe-eCC----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC---------
Q 024451          142 NTVKFFPDGNRFGTG-SDD----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---------  207 (267)
Q Consensus       142 ~~~~~~~~~~~l~~~-~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg---------  207 (267)
                      ....++|++++++-+ +..    -.++++|+++++.+.......      ....+.|.++++.++-...+.         
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~------~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP------KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE------ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc------ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            457889999988754 333    359999999987654322211      113489999988765554322         


Q ss_pred             --eEEEEeCCcccee--eecccccCCccc-eEEEEEECCCCCeEEEeEC
Q 024451          208 --DCYVWDTLLAKVV--LNLGSLQNSHEG-RITCLGLSADGSALCTGSW  251 (267)
Q Consensus       208 --~i~i~d~~~~~~~--~~~~~~~~~~~~-~v~~~~~~p~~~~l~sgs~  251 (267)
                        .|+.|.+-+....  .-+.   ..... ....+..++++++|+..+.
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe---~~~~~~~~~~~~~s~d~~~l~i~~~  246 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFE---EPDEPFWFVSVSRSKDGRYLFISSS  246 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC----TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred             CcEEEEEECCCChHhCeeEEe---ecCCCcEEEEEEecCcccEEEEEEE
Confidence              3677775443211  1111   11222 2567889999999875444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.62  E-value=0.41  Score=40.41  Aligned_cols=94  Identities=17%  Similarity=0.229  Sum_probs=57.5

Q ss_pred             EEEEecCCCEEEEeeCCCcEEE---EeCCC-C---eeeEEEEe-ecCCCCCCcEEEEEEc-----------cCCCEEEEE
Q 024451          143 TVKFFPDGNRFGTGSDDGTCRL---FDIRT-G---HQLQVYYQ-QHGENEIPHVTSIAFS-----------ISGRLLFAG  203 (267)
Q Consensus       143 ~~~~~~~~~~l~~~~~d~~i~i---wd~~~-~---~~~~~~~~-~~~~~~~~~v~~~~~s-----------~~~~~l~~g  203 (267)
                      .++.+|+++++|.+..++.+.+   |+... +   ........ .-.......|+++.+-           ++...+++|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4677889999998888877666   64421 1   11111111 1111111456666542           345789999


Q ss_pred             EeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          204 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       204 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      .++|.|++|.. ++..+..    +.-|+++|..+.+..
T Consensus        86 ~ssG~vrfyte-~G~LL~~----Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   86 TSSGYVRFYTE-NGVLLLS----QLLHEEPVLKIKCRS  118 (415)
T ss_pred             ecccEEEEEec-cchHHHH----HhcCccceEEEEecc
Confidence            99999999985 4444432    235888898888753

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.55  E-value=1.6  Score=38.80  Aligned_cols=221  Identities=13%  Similarity=0.195  Sum_probs=105.3

Q ss_pred             CCCeEEEccCCC------eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC------CeEEEEe
Q 024451            8 TGQSVACGGLDS------VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVLWD   75 (267)
Q Consensus         8 ~g~~l~~~~~d~------~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~v~iwd   75 (267)
                      .+.+++.||.++      ++..||.....     ......+. +...-.++....  +...++||.|      .++-.||
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~-----w~~~a~m~-~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD  355 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNE-----WSSLAPMP-SPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYD  355 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCc-----EeecCCCC-cccccccEEEEC--CEEEEEccccCCCcccceEEEec
Confidence            356778888874      66777765431     11111111 112233444444  3567788888      3466788


Q ss_pred             CCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe-----EEEEeCCCcccceEEeeccccceeEEEE-ecC
Q 024451           76 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST-----ARLWDTRVASRAVRTFHGHEGDVNTVKF-FPD  149 (267)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~-----i~iwd~~~~~~~~~~~~~~~~~i~~~~~-~~~  149 (267)
                      ..+..-....+  ...  ...-..++..  ++.+++.||.||.     +-.||.....  ................ .-+
T Consensus       356 ~~~~~W~~~a~--M~~--~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~--W~~va~m~~~r~~~gv~~~~  427 (571)
T KOG4441|consen  356 PRTNQWTPVAP--MNT--KRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK--WTPVAPMLTRRSGHGVAVLG  427 (571)
T ss_pred             CCCCceeccCC--ccC--ccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc--ccccCCCCcceeeeEEEEEC
Confidence            77654322111  100  0111122222  5678899999865     4455554221  1111111112222222 226


Q ss_pred             CCEEEEeeCCC------cEEEEeCCCCeeeEEEEeecCCCCCCc-EEEEEEccCCCEEEEEEeCC-----eEEEEeCCcc
Q 024451          150 GNRFGTGSDDG------TCRLFDIRTGHQLQVYYQQHGENEIPH-VTSIAFSISGRLLFAGYSNG-----DCYVWDTLLA  217 (267)
Q Consensus       150 ~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~g~~dg-----~i~i~d~~~~  217 (267)
                      |...++||.|+      ++..||..+++-...     .+..... -..+ -.-++.+.+.|+.|+     .+..||..+.
T Consensus       428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~-----~~M~~~R~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLI-----APMNTRRSGFGV-AVLNGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             CEEEEEcCcCCCccccceEEEEcCCCCceeec-----CCcccccccceE-EEECCEEEEECCccCCCccceEEEEcCCCC
Confidence            77788888554      467788877543211     1111111 1112 234667777777666     3667887654


Q ss_pred             ceeeecccccCCccceEEEEEECCCCCeEEEeECCCc
Q 024451          218 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN  254 (267)
Q Consensus       218 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~  254 (267)
                      +-..- ... ......+-...  -+++..+.|+.||.
T Consensus       502 ~W~~v-~~m-~~~rs~~g~~~--~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  502 QWTMV-APM-TSPRSAVGVVV--LGGKLYAVGGFDGN  534 (571)
T ss_pred             ceeEc-ccC-ccccccccEEE--ECCEEEEEecccCc
Confidence            32211 100 11111111111  25677788888775

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.54  E-value=1.3  Score=37.57  Aligned_cols=151  Identities=10%  Similarity=0.156  Sum_probs=79.4

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEE---EecCCCeeEEEeeCCCeEEEEeCCCCe----
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ---YVPDEDTHLITSSGDQTCVLWDITTGL----   80 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~~~~~~~~l~s~~~d~~v~iwd~~~~~----   80 (267)
                      +...|+.|+.+|.++||+...........-+.   ..-+.+|-.+.   |.+..+...++-=.-+.+.+|.+....    
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE---~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE---TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEE---EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence            34789999999999999975432221111111   12234454443   323222223333456667777762110    


Q ss_pred             -----eE-EEeCCccccCCccceEEEEEe---CCC-CeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCC
Q 024451           81 -----RT-SVFGGEFQSGHTADVLSVSIS---GSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  150 (267)
Q Consensus        81 -----~~-~~~~~~~~~~~~~~i~~~~~~---~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~  150 (267)
                           .. ..+...+    .....++++-   ... ..++..-+.||.+.+++-+.  .....+....----.+.|.+..
T Consensus       113 ~g~~~~L~~~yeh~l----~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~--~~f~~~lp~~llPgPl~Y~~~t  186 (418)
T PF14727_consen  113 HGNQYQLELIYEHSL----QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES--FAFSRFLPDFLLPGPLCYCPRT  186 (418)
T ss_pred             cCcEEEEEEEEEEec----ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc--EEEEEEcCCCCCCcCeEEeecC
Confidence                 11 1111000    1112222222   222 35677889999999998642  2222222221112357888888


Q ss_pred             CEEEEeeCCCcEEEEeC
Q 024451          151 NRFGTGSDDGTCRLFDI  167 (267)
Q Consensus       151 ~~l~~~~~d~~i~iwd~  167 (267)
                      +.|++++.+..+.-|..
T Consensus       187 Dsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  187 DSFVTASSSWTLECYKY  203 (418)
T ss_pred             CEEEEecCceeEEEecH
Confidence            88999998888888775

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.46  E-value=1  Score=35.80  Aligned_cols=145  Identities=14%  Similarity=0.151  Sum_probs=78.7

Q ss_pred             CeeEEEeeCCCeEEEEeCCC-CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE----
Q 024451           59 DTHLITSSGDQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT----  133 (267)
Q Consensus        59 ~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~----  133 (267)
                      ++.|+.|+.+| +.+++... .......       +...|..+.+.+..+.+++-  .|+.+.++++..-......    
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~-------~~~~I~ql~vl~~~~~llvL--sd~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL-------KLSSITQLSVLPELNLLLVL--SDGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEe-------ecceEEEEEEecccCEEEEE--cCCccEEEEchhhcccccccccc
Confidence            35688889999 88998832 2222221       23348888888765544443  3489999997532211100    


Q ss_pred             ---------eeccccceeEEE--EecCCCEEEEeeCCCcEEEEeCCCCeeeE-EEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451          134 ---------FHGHEGDVNTVK--FFPDGNRFGTGSDDGTCRLFDIRTGHQLQ-VYYQQHGENEIPHVTSIAFSISGRLLF  201 (267)
Q Consensus       134 ---------~~~~~~~i~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~  201 (267)
                               .......+...+  -.+.+...++....++|.+|......... ...++..  -...+..++|.  ++.++
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~--~~~i~  152 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFL--GNKIC  152 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEe--CCEEE
Confidence                     111222344444  11233444444555699998876531111 1111111  12357888887  56777


Q ss_pred             EEEeCCeEEEEeCCccc
Q 024451          202 AGYSNGDCYVWDTLLAK  218 (267)
Q Consensus       202 ~g~~dg~i~i~d~~~~~  218 (267)
                      .|..++ ..+.|+.+..
T Consensus       153 v~~~~~-f~~idl~~~~  168 (275)
T PF00780_consen  153 VGTSKG-FYLIDLNTGS  168 (275)
T ss_pred             EEeCCc-eEEEecCCCC
Confidence            776554 6788877543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.45  E-value=1.1  Score=36.32  Aligned_cols=114  Identities=19%  Similarity=0.189  Sum_probs=65.8

Q ss_pred             ceEEeeccccceeEEEEecCCCEEEEee-CCCcEEEEeCCC--Ce---eeEEEEeecCCCCCCcEEEEEEccCCCEEEEE
Q 024451          130 AVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRT--GH---QLQVYYQQHGENEIPHVTSIAFSISGRLLFAG  203 (267)
Q Consensus       130 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~--~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g  203 (267)
                      ..+.+..+-..-+.++|+|+++.|..+- ..+.|.-|++..  +.   ....+..   ..+.+..-.++.+.+|.+-+++
T Consensus       154 ~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~---~~~~G~PDG~~vDadG~lw~~a  230 (307)
T COG3386         154 VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDF---DEEPGLPDGMAVDADGNLWVAA  230 (307)
T ss_pred             EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEc---cCCCCCCCceEEeCCCCEEEec
Confidence            3444444455568899999998776654 457788887752  11   1111111   1112233456677788877555


Q ss_pred             EeCC-eEEEEeCCccceeeecccccCCccceEEEEEEC-CCCCeEEEeEC
Q 024451          204 YSNG-DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS-ADGSALCTGSW  251 (267)
Q Consensus       204 ~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~sgs~  251 (267)
                      ..+| .|..|+.. ++.+.... +   ....+++++|- |+.+.|...+.
T Consensus       231 ~~~g~~v~~~~pd-G~l~~~i~-l---P~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         231 VWGGGRVVRFNPD-GKLLGEIK-L---PVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             ccCCceEEEECCC-CcEEEEEE-C---CCCCCccceEeCCCcCEEEEEec
Confidence            4444 89999977 66554432 1   11456777774 66666654443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.31  E-value=1.7  Score=38.74  Aligned_cols=103  Identities=15%  Similarity=0.231  Sum_probs=62.1

Q ss_pred             eEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEe--cCCCEEEEeeCCCcEEEEeCCC-----C----eeeEEE
Q 024451          108 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRT-----G----HQLQVY  176 (267)
Q Consensus       108 ~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~iwd~~~-----~----~~~~~~  176 (267)
                      +..+..+....+.|||.+.........-...+.|..++|.  |+++.+.+.|-.+.|.++--..     .    ..+..+
T Consensus        42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i  121 (631)
T PF12234_consen   42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI  121 (631)
T ss_pred             cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence            3333444445799999875432111111346789999994  6888888888889999986321     0    111111


Q ss_pred             EeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451          177 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  214 (267)
Q Consensus       177 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~  214 (267)
                      .-.  .....+|.+.+|-++|..+++.  +.++.++|-
T Consensus       122 ~i~--~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  122 DIS--SHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             Eee--cCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            111  1122357888999888777654  467888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.20  E-value=1.2  Score=35.11  Aligned_cols=153  Identities=16%  Similarity=0.149  Sum_probs=84.9

Q ss_pred             ceEEEEEeCCCCeEEEEe--cCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe-CCCCee
Q 024451           96 DVLSVSISGSNSRMFVSG--SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD-IRTGHQ  172 (267)
Q Consensus        96 ~i~~~~~~~~~~~~~~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~  172 (267)
                      .+.+.++++....+.+..  .....+.++...  ......+.  ...+..-.|++++...+....+...+++. ..+++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            456677776555444444  233355555433  22222222  23677789999987777766666777764 333332


Q ss_pred             eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE---eCCeEEEEeCCcc-----ceeeecccccCCccceEEEEEECCCCC
Q 024451          173 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLA-----KVVLNLGSLQNSHEGRITCLGLSADGS  244 (267)
Q Consensus       173 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~~  244 (267)
                      ........ . ....|.++.+||+|..++.-.   .++.|++=-+...     ..+.............+..++|.+++.
T Consensus       101 ~~~~v~~~-~-~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  101 EPVEVDWP-G-LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             eeEEeccc-c-cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence            22111111 1 111699999999999887765   3467766543211     111111111122345789999999998


Q ss_pred             eEEEeECCCc
Q 024451          245 ALCTGSWDTN  254 (267)
Q Consensus       245 ~l~sgs~dg~  254 (267)
                      +++.+...+.
T Consensus       179 L~V~~~~~~~  188 (253)
T PF10647_consen  179 LVVLGRSAGG  188 (253)
T ss_pred             EEEEeCCCCC
Confidence            8776655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.15  E-value=0.99  Score=38.13  Aligned_cols=105  Identities=13%  Similarity=0.200  Sum_probs=63.2

Q ss_pred             cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451          137 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  216 (267)
Q Consensus       137 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~  216 (267)
                      .+++|.++.|++|.+.+|..=.|.+|.+++....+.......++ ......|...+|+.+....+.....  +-+|....
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c-k~k~~~IlGF~W~~s~e~A~i~~~G--~e~y~v~p  141 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC-KTKNANILGFCWTSSTEIAFITDQG--IEFYQVLP  141 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh-ccCcceeEEEEEecCeeEEEEecCC--eEEEEEch
Confidence            45789999999999999999999999999984333222111111 1123358888998775544443333  34444322


Q ss_pred             cceeeecccccCCccceEEEEEECCCCCeEE
Q 024451          217 AKVVLNLGSLQNSHEGRITCLGLSADGSALC  247 (267)
Q Consensus       217 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  247 (267)
                      .+.   ..++.+.|.-.|.--.|.|+-+.+.
T Consensus       142 ekr---slRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  142 EKR---SLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             hhh---hhhhhhhcccCccEEEEccccceEe
Confidence            111   1122245666677777777766543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.10  E-value=0.13  Score=27.93  Aligned_cols=32  Identities=22%  Similarity=0.492  Sum_probs=25.5

Q ss_pred             eeEEEEEEecCCC--eeEEEeeCCCeEEEEeCCC
Q 024451           47 GYVSCCQYVPDED--THLITSSGDQTCVLWDITT   78 (267)
Q Consensus        47 ~~v~~~~~~~~~~--~~l~s~~~d~~v~iwd~~~   78 (267)
                      +.|.+|.|+|.+.  .+|+-+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999998655  5777777778999999985

It contains a characteristic DLL sequence motif.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.91  E-value=0.31  Score=45.48  Aligned_cols=136  Identities=15%  Similarity=0.055  Sum_probs=82.3

Q ss_pred             EEEEecCCCeEEEEeCCCcccc----eEEeecc------ccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEEEE
Q 024451          109 MFVSGSCDSTARLWDTRVASRA----VRTFHGH------EGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYY  177 (267)
Q Consensus       109 ~~~s~~~d~~i~iwd~~~~~~~----~~~~~~~------~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~  177 (267)
                      .++..+.+-.|..||++.-...    .+.+.-|      ..-..++.|.|. -...+.+..|+.|++.-+.......  .
T Consensus       116 ~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v--~  193 (1405)
T KOG3630|consen  116 VVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNV--T  193 (1405)
T ss_pred             EEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhh--c
Confidence            3444455557889998632211    1111111      122456778775 2346677889999998765322110  0


Q ss_pred             eecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeE
Q 024451          178 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  250 (267)
Q Consensus       178 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs  250 (267)
                      .   ..-....++++|+|.|..++.|-.+|.+..|..... ....+.+.+..-..+|.+++|--...+|++-+
T Consensus       194 s---~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  194 S---FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             c---cCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            0   011124689999999999999999999999975432 22222333333357899999988788887644

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.84  E-value=1.9  Score=35.74  Aligned_cols=155  Identities=20%  Similarity=0.255  Sum_probs=73.6

Q ss_pred             eeeEEEEEEecCCCeeEE-EeeCCC---eEEEEeCCCCeeEEEeCCccccCCccceEEEEEe-CCCCeEEEEecCCCeEE
Q 024451           46 KGYVSCCQYVPDEDTHLI-TSSGDQ---TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSCDSTAR  120 (267)
Q Consensus        46 ~~~v~~~~~~~~~~~~l~-s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~s~~~d~~i~  120 (267)
                      ...+..+.|.+++..+++ ....+.   .+.+.|..++....... +...+.-.......+. +.+..++.....||.-+
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h  261 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE-ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH  261 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE-EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE-ecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence            456777888887642333 333333   25566776654333221 1111111111233333 44555555555777655


Q ss_pred             EEeCCCcccceEEeeccccceeE-EEEecCCCEEE-EeeCC--CcEEEE--eCCCCeeeEEEEeecCCCCCCcEEEEEEc
Q 024451          121 LWDTRVASRAVRTFHGHEGDVNT-VKFFPDGNRFG-TGSDD--GTCRLF--DIRTGHQLQVYYQQHGENEIPHVTSIAFS  194 (267)
Q Consensus       121 iwd~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~-~~~~d--~~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~s  194 (267)
                      ++-+.......+.+....-.|.. +.++++++.+. ++..+  ..-.+|  +++.+.....+..    .. .....+.||
T Consensus       262 ly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~----~~-~~~~~~~~S  336 (353)
T PF00930_consen  262 LYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC----ED-GDHYSASFS  336 (353)
T ss_dssp             EEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST----TS-STTEEEEE-
T ss_pred             EEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC----CC-CCceEEEEC
Confidence            55433333334445433445644 67777766543 44432  234444  4441222222211    11 111688999


Q ss_pred             cCCCEEEEEEeC
Q 024451          195 ISGRLLFAGYSN  206 (267)
Q Consensus       195 ~~~~~l~~g~~d  206 (267)
                      |++++++..++.
T Consensus       337 pdg~y~v~~~s~  348 (353)
T PF00930_consen  337 PDGKYYVDTYSG  348 (353)
T ss_dssp             TTSSEEEEEEES
T ss_pred             CCCCEEEEEEcC
Confidence            999998876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.84  E-value=2.7  Score=37.41  Aligned_cols=147  Identities=14%  Similarity=0.201  Sum_probs=71.2

Q ss_pred             CCCeEEEccCC------CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe-----EEEEeC
Q 024451            8 TGQSVACGGLD------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-----CVLWDI   76 (267)
Q Consensus         8 ~g~~l~~~~~d------~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-----v~iwd~   76 (267)
                      +|...++||.|      .++..||.....     ......+.........+..   ++...+.||.||.     |-.||.
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-----W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp  403 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-----WTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDP  403 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCc-----eeccCCccCccccceeEEE---CCEEEEEeccccccccccEEEecC
Confidence            56889999999      345566654321     1111112111111211222   3456778888864     667777


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe------EEEEeCCCcccceEEeec---cccceeEEEEe
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST------ARLWDTRVASRAVRTFHG---HEGDVNTVKFF  147 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~------i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~  147 (267)
                      .+.+-....  ...  ....-..++.  -++++++.||.++.      +..||.....  ......   .... ..++. 
T Consensus       404 ~~~~W~~va--~m~--~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~-~g~a~-  473 (571)
T KOG4441|consen  404 VTNKWTPVA--PML--TRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSG-FGVAV-  473 (571)
T ss_pred             CCCcccccC--CCC--cceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCccccccc-ceEEE-
Confidence            654322111  000  0111122222  35788888886654      4566654321  221111   1111 11222 


Q ss_pred             cCCCEEEEeeCCC-----cEEEEeCCCCee
Q 024451          148 PDGNRFGTGSDDG-----TCRLFDIRTGHQ  172 (267)
Q Consensus       148 ~~~~~l~~~~~d~-----~i~iwd~~~~~~  172 (267)
                      -++...+.||.|+     ++..+|..+.+-
T Consensus       474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W  503 (571)
T KOG4441|consen  474 LNGKIYVVGGFDGTSALSSVERYDPETNQW  503 (571)
T ss_pred             ECCEEEEECCccCCCccceEEEEcCCCCce
Confidence            2567778888776     377788876543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.75  E-value=2.6  Score=36.77  Aligned_cols=158  Identities=18%  Similarity=0.249  Sum_probs=85.0

Q ss_pred             eEEEeeCCCeEEEEeCCCCeeEEEeCCccc-cCCccceE--EEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc
Q 024451           61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQ-SGHTADVL--SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH  137 (267)
Q Consensus        61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~~~~~~i~--~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~  137 (267)
                      .++.++.++.|.-.|..+++.+..+..... ......+.  .+.+.  +...++.++.++.|.-+|.++.+...+ +...
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~~W~-~~~~  139 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQVWK-FGNN  139 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCEeee-ecCC
Confidence            466778889999999998876654432110 00000110  11111  213456677899999999876543332 2211


Q ss_pred             cc-----cee-EEEEecCCCEEEEee---------CCCcEEEEeCCCCeeeEEEEeecCCCCC---------------Cc
Q 024451          138 EG-----DVN-TVKFFPDGNRFGTGS---------DDGTCRLFDIRTGHQLQVYYQQHGENEI---------------PH  187 (267)
Q Consensus       138 ~~-----~i~-~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------------~~  187 (267)
                      ..     .+. +..+.  +..++.++         .++.+.-+|..+++.+-.+.........               ..
T Consensus       140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            11     011 11222  23444443         3678889999998876544321110000               00


Q ss_pred             E-EEEEEccCCCEEEEEEeCC------------------eEEEEeCCccceeeec
Q 024451          188 V-TSIAFSISGRLLFAGYSNG------------------DCYVWDTLLAKVVLNL  223 (267)
Q Consensus       188 v-~~~~~s~~~~~l~~g~~dg------------------~i~i~d~~~~~~~~~~  223 (267)
                      + .+.++++.+..++.++.++                  .|+-+|..+++.....
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~  272 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFY  272 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEe
Confidence            1 1234455667788887665                  6888999888877654

The alignment model contains an 8-bladed beta-propeller.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.74  E-value=0.053  Score=48.99  Aligned_cols=124  Identities=19%  Similarity=0.184  Sum_probs=66.6

Q ss_pred             cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC--CeeEEEeCCccccCCccceEEEEEeC--CCCeEEEEecCC
Q 024451           41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT--GLRTSVFGGEFQSGHTADVLSVSISG--SNSRMFVSGSCD  116 (267)
Q Consensus        41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~s~~~d  116 (267)
                      ..+|-.+.|-.++|...+-..+.  -.-|.+.+||++.  |+-...+...........+.-|.|.+  .+.-++..+-.+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            34566677777777543322222  2336788998863  21111110000011112223333332  233455666777


Q ss_pred             CeEEEEeCCCcccceEEeeccccceeE-----------EEEecCCCEEEEeeCCCcEEEEeCC
Q 024451          117 STARLWDTRVASRAVRTFHGHEGDVNT-----------VKFFPDGNRFGTGSDDGTCRLFDIR  168 (267)
Q Consensus       117 ~~i~iwd~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~~l~~~~~d~~i~iwd~~  168 (267)
                      +.+++.......  ...+.+|...+..           ...+|||+.|+.++.||.+++|.+-
T Consensus       205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            888876654222  2333445444332           2468999999999999999999864

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.58  E-value=0.33  Score=37.31  Aligned_cols=68  Identities=31%  Similarity=0.346  Sum_probs=50.2

Q ss_pred             EEccCCCEEEEEEeCCeEEEEeCCccceeeeccc---ccC-------CccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          192 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS---LQN-------SHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       192 ~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---~~~-------~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      .+..++.++++-+.+|.+++||+...+.+....+   +..       .....|..+.++.+|.-+++-+ +|....|+.
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            3567888999999999999999988776543311   111       3456789999999998888766 477777763

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.49  E-value=2.6  Score=35.50  Aligned_cols=201  Identities=21%  Similarity=0.256  Sum_probs=123.1

Q ss_pred             eeeCCCCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee--CCCeEEEEeCCCC
Q 024451            3 CAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTG   79 (267)
Q Consensus         3 ~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~   79 (267)
                      ++.++.+. .+++...++.+.+.|......      ......+.  .-..+++.|+++...++-.  .++++.+-|..+.
T Consensus        79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~------~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~  150 (381)
T COG3391          79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTV------LGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN  150 (381)
T ss_pred             eeeCCCCCeEEEecCCCCeEEEEcCcccce------eeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence            45667775 677777778999999544221      11111122  3345788887755444444  3688888888776


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE-E---eeccccceeEEEEecCCCEEEE
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-T---FHGHEGDVNTVKFFPDGNRFGT  155 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~l~~  155 (267)
                      ........    +. .+ ..+++.+...+.+++...++.|.+.|.... ...+ .   ...-...-..+.+.|+++++..
T Consensus       151 ~~~~~~~v----G~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV  223 (381)
T COG3391         151 KVTATIPV----GN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYV  223 (381)
T ss_pred             eEEEEEec----CC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceeccccccccccCCCCceEEECCCCCEEEE
Confidence            65544321    11 12 667788777767777778899999996532 1221 0   0111122357889999986655


Q ss_pred             eeCC---CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCccceeee
Q 024451          156 GSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLN  222 (267)
Q Consensus       156 ~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~~~~  222 (267)
                      .-..   +.+...|..++.....-..   .... ....+..+|+|.++.+... .+.+.+.|..+.+....
T Consensus       224 ~~~~~~~~~v~~id~~~~~v~~~~~~---~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         224 ANDGSGSNNVLKIDTATGNVTATDLP---VGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             EeccCCCceEEEEeCCCceEEEeccc---cccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            4433   5899999887765432111   1111 2456788999999888754 48999999877665543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.38  E-value=2.4  Score=34.84  Aligned_cols=60  Identities=20%  Similarity=0.268  Sum_probs=38.3

Q ss_pred             CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcE
Q 024451          196 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL  255 (267)
Q Consensus       196 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i  255 (267)
                      .+.++++....+.|....+.....+.....+......++..+++.|||.+.++-+.+|.|
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i  329 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI  329 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred             cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence            345666666667777777654433322222224455689999999999999988778876

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.30  E-value=2.9  Score=35.43  Aligned_cols=80  Identities=24%  Similarity=0.181  Sum_probs=47.2

Q ss_pred             cEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC--------------CCCeEE-EeEC
Q 024451          187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA--------------DGSALC-TGSW  251 (267)
Q Consensus       187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p--------------~~~~l~-sgs~  251 (267)
                      .+.+++.+|++++.++..+=|.|.++|+.....+.-..+.....-+.+....-..              ...+|+ =+-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            3678899999998888777799999998776554333221111111111111100              012333 3566


Q ss_pred             CCcEEEEecCceEec
Q 024451          252 DTNLKIWAFGGYRRV  266 (267)
Q Consensus       252 dg~i~~w~~~~~~~~  266 (267)
                      -|.|.||.+..-+|+
T Consensus       389 Rg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  389 RGILEVWSMRQGPRV  403 (415)
T ss_pred             CCeEEEEecCCCCEE
Confidence            889999998665554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.24  E-value=3.5  Score=36.13  Aligned_cols=150  Identities=11%  Similarity=0.123  Sum_probs=81.3

Q ss_pred             ceEEEEEeCCCCeEEEEec--CCCeEEEEeCCCcccceEEeeccccceeEEEEecCC----CEEEEeeCCCcEEEEeCCC
Q 024451           96 DVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG----NRFGTGSDDGTCRLFDIRT  169 (267)
Q Consensus        96 ~i~~~~~~~~~~~~~~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~i~iwd~~~  169 (267)
                      ++.-++|. .+.+.++|.-  .+|.+++=|.    ..+.++    .-|..+.|.|-+    ..+.+..-.+.|.+|.+..
T Consensus        21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGds----~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS----KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             cccceEec-CCCEEEEEeeeeeCCccccCCc----cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            45566665 2344444432  3344443322    234444    347889998853    2445556678999999752


Q ss_pred             C-----eeeEEEEeecCCCCCCc--EEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC
Q 024451          170 G-----HQLQVYYQQHGENEIPH--VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  242 (267)
Q Consensus       170 ~-----~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  242 (267)
                      .     +.+....-+..  +..+  ...+.|+|....|++=.....-.+++++......+..   -...+.|.|.+|.+|
T Consensus        92 s~~e~~K~l~sQtcEi~--e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD---i~~~G~IhCACWT~D  166 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIR--EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD---IKTSGLIHCACWTKD  166 (671)
T ss_pred             Cccccccceeeeeeecc--CCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe---ccCCceEEEEEecCc
Confidence            1     21111111111  1111  2355699999888876655554566654332211110   134678999999999


Q ss_pred             CCeEEEeEC-CCcEEEEe
Q 024451          243 GSALCTGSW-DTNLKIWA  259 (267)
Q Consensus       243 ~~~l~sgs~-dg~i~~w~  259 (267)
                      |+-|+.+-. .=.-.+||
T Consensus       167 G~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  167 GQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             CCEEEEEeCCeEEEEEec
Confidence            998765432 22355665

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.18  E-value=2.6  Score=34.45  Aligned_cols=148  Identities=16%  Similarity=0.129  Sum_probs=80.0

Q ss_pred             eEEEEecCCCeEEEEeCCCcccceE----Eeeccccce-eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCC
Q 024451          108 RMFVSGSCDSTARLWDTRVASRAVR----TFHGHEGDV-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  182 (267)
Q Consensus       108 ~~~~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~~i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  182 (267)
                      +-|.+-|.||.+.-..+....+...    .+.....++ ..-.+...+..++--+-.|.|.--|+....... .......
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-~~~~~~~  226 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF-GKPWSLL  226 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-EEEEESS
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-cCccccc
Confidence            4467888899888777654333221    122222222 233444444445445778888888876543211 1111000


Q ss_pred             -------C-CCCcEEEEEEccCCCEEEEEEe--------C--CeEEEEeCCccceeeecccccCCccceEEEEEECCCCC
Q 024451          183 -------N-EIPHVTSIAFSISGRLLFAGYS--------N--GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  244 (267)
Q Consensus       183 -------~-~~~~v~~~~~s~~~~~l~~g~~--------d--g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  244 (267)
                             + ..+.-.-+++++..+.|.+--.        +  -+|.+||+.+.+.+..+.     -+.++.+++++-+.+
T Consensus       227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~-----l~~~~~Si~Vsqd~~  301 (342)
T PF06433_consen  227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP-----LEHPIDSIAVSQDDK  301 (342)
T ss_dssp             -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE-----EEEEESEEEEESSSS
T ss_pred             CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe-----CCCccceEEEccCCC
Confidence                   0 0112234667765554444211        1  278888998888776542     234677899987665


Q ss_pred             -eEEEe-ECCCcEEEEecC
Q 024451          245 -ALCTG-SWDTNLKIWAFG  261 (267)
Q Consensus       245 -~l~sg-s~dg~i~~w~~~  261 (267)
                       +|... ..++.+.+||..
T Consensus       302 P~L~~~~~~~~~l~v~D~~  320 (342)
T PF06433_consen  302 PLLYALSAGDGTLDVYDAA  320 (342)
T ss_dssp             -EEEEEETTTTEEEEEETT
T ss_pred             cEEEEEcCCCCeEEEEeCc
Confidence             55443 457899999863

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.11  E-value=2.6  Score=34.21  Aligned_cols=193  Identities=16%  Similarity=0.183  Sum_probs=95.6

Q ss_pred             EecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE
Q 024451           54 YVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT  133 (267)
Q Consensus        54 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~  133 (267)
                      |.+....++.+--..+.|.-|+..++.... +.      +...+.++...... ..++++..  .+.+++.+.... +..
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~------~p~~~~~~~~~d~~-g~Lv~~~~--g~~~~~~~~~~~-~t~  100 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKRV-FP------SPGGFSSGALIDAG-GRLIACEH--GVRLLDPDTGGK-ITL  100 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE------CCCCcccceeecCC-CeEEEEcc--ccEEEeccCCce-eEE
Confidence            445544455555667788888887664322 21      11122333333233 33444333  244555432221 121


Q ss_pred             ee----cc-ccceeEEEEecCCCEEEEeeC---------CCcEEEEeCC-CCeeeEEEEeecCCCCCCcEEEEEEccCCC
Q 024451          134 FH----GH-EGDVNTVKFFPDGNRFGTGSD---------DGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGR  198 (267)
Q Consensus       134 ~~----~~-~~~i~~~~~~~~~~~l~~~~~---------d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  198 (267)
                      +.    +. ...-+.+...|+|.+.++...         -..-.+|.+. .+........     .......++|||+++
T Consensus       101 ~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~-----~~~~~NGla~SpDg~  175 (307)
T COG3386         101 LAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD-----DLTIPNGLAFSPDGK  175 (307)
T ss_pred             eccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC-----cEEecCceEECCCCC
Confidence            11    11 133567888899887665433         1123455555 3333222211     112347899999998


Q ss_pred             EEEEEEe-CCeEEEEeCCc--cceeee-cccccCCccceEEEEEECCCCCeEEEeECCC-cEEEEecCc
Q 024451          199 LLFAGYS-NGDCYVWDTLL--AKVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSWDT-NLKIWAFGG  262 (267)
Q Consensus       199 ~l~~g~~-dg~i~i~d~~~--~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg-~i~~w~~~~  262 (267)
                      .+....+ .+.|+-|+...  ...... .........+.--.++...+|++.+++-.+| .|..|+..|
T Consensus       176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG  244 (307)
T COG3386         176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDG  244 (307)
T ss_pred             EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCC
Confidence            8877765 47888887652  110000 0000011233444566667777776544444 777776654

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.22  E-value=6  Score=35.44  Aligned_cols=113  Identities=15%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             ccceeEEEEecCCCEEEEeeCCCcEEE---EeCCCCeeeEE-EEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEe
Q 024451          138 EGDVNTVKFFPDGNRFGTGSDDGTCRL---FDIRTGHQLQV-YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  213 (267)
Q Consensus       138 ~~~i~~~~~~~~~~~l~~~~~d~~i~i---wd~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d  213 (267)
                      .+.|..+.|+|||+.++... ++.|.+   -....+. ... ....-.......+.++.|..++.++ ++..++.-.+|-
T Consensus       447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEE
Confidence            45799999999999887655 467766   3333333 111 0000011111235788999998855 555555444554


Q ss_pred             CCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEE
Q 024451          214 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK  256 (267)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~  256 (267)
                      +.......... .......++.+++=+|+ . +.....++.+.
T Consensus       524 v~vDG~~~~~~-~~~n~~~~v~~vaa~~~-~-iyv~~~~g~~~  563 (591)
T PRK13616        524 VNLDGSNSDAL-PSRNLSAPVVAVAASPS-T-VYVTDARAVLQ  563 (591)
T ss_pred             EecCCcccccc-CCCCccCceEEEecCCc-e-EEEEcCCceEE
Confidence            32221111110 00112456777777763 3 33345555443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.13  E-value=6.6  Score=35.68  Aligned_cols=110  Identities=16%  Similarity=0.181  Sum_probs=66.1

Q ss_pred             CCeeEEEeeCCCeEEEEeCCCC------e----e----EEEeCCccccCCccceEEEEEe-CCCCeEEEEecCCCeEEEE
Q 024451           58 EDTHLITSSGDQTCVLWDITTG------L----R----TSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSCDSTARLW  122 (267)
Q Consensus        58 ~~~~l~s~~~d~~v~iwd~~~~------~----~----~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~s~~~d~~i~iw  122 (267)
                      +++.|+.|..||.|.+|..++-      .    .    .....-.+...-...++.++++ ....+++|.++....|.||
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            3468889999999999976320      0    0    0000001111234467888887 1245677778888888888


Q ss_pred             eCCCc--ccceEEeeccccceeEEEEecCC---C---EEEEeeCCCcEEEEeC
Q 024451          123 DTRVA--SRAVRTFHGHEGDVNTVKFFPDG---N---RFGTGSDDGTCRLFDI  167 (267)
Q Consensus       123 d~~~~--~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~i~iwd~  167 (267)
                      -....  +.....-..|..-|.++.|-++.   .   .+++++-.|.+.+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            55421  11111111234458889997643   2   6788899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.06  E-value=4.1  Score=33.55  Aligned_cols=107  Identities=18%  Similarity=0.253  Sum_probs=54.7

Q ss_pred             eeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEe--ecCCCCCCcEEEEEEccC---CCEEEEEEe-C--------
Q 024451          141 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ--QHGENEIPHVTSIAFSIS---GRLLFAGYS-N--------  206 (267)
Q Consensus       141 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~---~~~l~~g~~-d--------  206 (267)
                      -..++|.|+|.++++ -+.|.|++++ ..+.....+..  ............++++|+   +.+|.+.+. .        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            468999999988775 5599999999 44443122211  111223346789999994   344444333 1        


Q ss_pred             CeEEEEeCCcc-------ceee-eccc-ccCCccceEEEEEECCCCCeEEEeEC
Q 024451          207 GDCYVWDTLLA-------KVVL-NLGS-LQNSHEGRITCLGLSADGSALCTGSW  251 (267)
Q Consensus       207 g~i~i~d~~~~-------~~~~-~~~~-~~~~~~~~v~~~~~~p~~~~l~sgs~  251 (267)
                      ..|.-|.....       +.+. .... ....|.+  ..|+|.|||.+.++.+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g--~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNG--GGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-E--EEEEE-TTSEEEEEEB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCC--ccccCCCCCcEEEEeCC
Confidence            13333332211       1111 1111 1123543  56999999977666544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.91  E-value=6.3  Score=36.12  Aligned_cols=77  Identities=16%  Similarity=0.069  Sum_probs=51.0

Q ss_pred             CcEEEEEEccCCCEEEEEEeCCeEEEEeCCc-c--------ce--e-ee--c--ccccCCccceEEEEEECCC---CCeE
Q 024451          186 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-A--------KV--V-LN--L--GSLQNSHEGRITCLGLSAD---GSAL  246 (267)
Q Consensus       186 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~-~--------~~--~-~~--~--~~~~~~~~~~v~~~~~~p~---~~~l  246 (267)
                      ..|..+.++++|.+++..+..|...+.=.+. +        +.  . ..  +  ..+...+...|..+.|+|.   +.+|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            3588999999999998888777544432111 0        10  0 00  0  0111234568999999997   4788


Q ss_pred             EEeECCCcEEEEecCc
Q 024451          247 CTGSWDTNLKIWAFGG  262 (267)
Q Consensus       247 ~sgs~dg~i~~w~~~~  262 (267)
                      +.=..|+++|+|++..
T Consensus       165 ~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEecCCEEEEEecCC
Confidence            8888899999999853

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.82  E-value=4.1  Score=32.50  Aligned_cols=125  Identities=10%  Similarity=0.142  Sum_probs=81.7

Q ss_pred             ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451          136 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  215 (267)
Q Consensus       136 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~  215 (267)
                      +-...+.++.|+|+.+.|.+......-.++=...|+.+..+.-..    ......+.+..+|++.++--.++.++++.+.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g----~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG----FSDPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc----cCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            444559999999999888887777777776666677665443211    1123456777788888777778888888654


Q ss_pred             ccceeeeccc----c-cCCc-cceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          216 LAKVVLNLGS----L-QNSH-EGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       216 ~~~~~~~~~~----~-~~~~-~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      ....+.....    + ...+ +.....++|.|....|..+=.-.-+.||...+..
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~  213 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP  213 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence            4322211110    0 0112 5567889999998888887777778888765543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=92.80  E-value=8.4  Score=36.01  Aligned_cols=153  Identities=14%  Similarity=0.044  Sum_probs=75.9

Q ss_pred             EEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCC---C---EEEEeeCCCcEEEEeCCCCeeeEEEEeecCC
Q 024451          109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG---N---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  182 (267)
Q Consensus       109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  182 (267)
                      .++.++.++.+...++............-...|.|++++|-+   +   +++.|..+..+.+.-....-.+....+...+
T Consensus       501 qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~  580 (1096)
T KOG1897|consen  501 QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE  580 (1096)
T ss_pred             EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC
Confidence            455566666666666554331111112235678999999742   2   6788876665554433222222222111111


Q ss_pred             CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC-CCeEEEeECCCcEEEEecC
Q 024451          183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-GSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       183 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~sgs~dg~i~~w~~~  261 (267)
                      .-...|.-.+|-.+..+|.++..||.+.-|-+........-..-..-...|+.--.|+.. ..++.++ .|+-..+|..+
T Consensus       581 ~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~-sdrP~viY~~n  659 (1096)
T KOG1897|consen  581 IIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL-SDRPTVIYSSN  659 (1096)
T ss_pred             ccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe-CCCCEEEEecC
Confidence            111224444555668899999999998877654332221111000112234444445433 3344433 46666666544


Q ss_pred             c
Q 024451          262 G  262 (267)
Q Consensus       262 ~  262 (267)
                      +
T Consensus       660 ~  660 (1096)
T KOG1897|consen  660 G  660 (1096)
T ss_pred             C
Confidence            3

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.79  E-value=3.9  Score=32.10  Aligned_cols=108  Identities=18%  Similarity=0.083  Sum_probs=70.6

Q ss_pred             cCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee
Q 024451           56 PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH  135 (267)
Q Consensus        56 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~  135 (267)
                      ++...+++.||..+.+..-|..++.......      -..++.+-+.. - +.+++.|+..|.+.+.+.+++.+... +.
T Consensus        20 ~dskT~v~igSHs~~~~avd~~sG~~~We~i------lg~RiE~sa~v-v-gdfVV~GCy~g~lYfl~~~tGs~~w~-f~   90 (354)
T KOG4649|consen   20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI------LGVRIECSAIV-V-GDFVVLGCYSGGLYFLCVKTGSQIWN-FV   90 (354)
T ss_pred             cCCceEEEEecCCceEEEecCCCCcEEeehh------hCceeeeeeEE-E-CCEEEEEEccCcEEEEEecchhheee-ee
Confidence            4556788889999999888888876443211      11223222221 1 23578899999999999886644332 22


Q ss_pred             ccccce-eEEEEecCCCEEEEeeCCCcEEEEeCCCCeee
Q 024451          136 GHEGDV-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL  173 (267)
Q Consensus       136 ~~~~~i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  173 (267)
                      .- +.| ......+++..+.+++.|+.....|.++..++
T Consensus        91 ~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cV  128 (354)
T KOG4649|consen   91 IL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV  128 (354)
T ss_pred             eh-hhhccceEEcCCCceEEEecCCCcEEEecccccceE
Confidence            21 222 23344678899999999999999999886654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.75  E-value=3.3  Score=39.15  Aligned_cols=102  Identities=16%  Similarity=0.130  Sum_probs=66.4

Q ss_pred             EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEE
Q 024451           98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY  177 (267)
Q Consensus        98 ~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  177 (267)
                      .++.|+|.-....+....|+.|++..+.........+. -...++++.|+|.|+.++.|-..|++.-|-..- +....+.
T Consensus       159 ~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip  236 (1405)
T KOG3630|consen  159 LKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIP  236 (1405)
T ss_pred             ccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccc-ceeeccc
Confidence            45566654444567778899999987764433333322 345679999999999999999999998887542 2111111


Q ss_pred             eecCCCCCCcEEEEEEccCCCEEEE
Q 024451          178 QQHGENEIPHVTSIAFSISGRLLFA  202 (267)
Q Consensus       178 ~~~~~~~~~~v~~~~~s~~~~~l~~  202 (267)
                      .. ...+...|.+++|-....++++
T Consensus       237 ~P-p~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  237 EP-PVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             CC-CcCCCcceeEEEEecceeEEEE
Confidence            11 1112356899999877776655

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.65  E-value=4.5  Score=32.53  Aligned_cols=231  Identities=15%  Similarity=0.210  Sum_probs=116.3

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccC-----CeeeEEEEEEecCC-----------CeeEEEee
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDE-----------DTHLITSS   66 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~-----------~~~l~s~~   66 (267)
                      ++|+|.+..-++....+...+||.......--..++.-.+..     .....+-+.|+...           ...++.++
T Consensus        28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t  107 (336)
T TIGR03118        28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT  107 (336)
T ss_pred             eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence            578999998898888999999998632211111122222221     11234445554321           12367789


Q ss_pred             CCCeEEEEeCCCCee-----EEEeCCccccCCccce---EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce-EEeecc
Q 024451           67 GDQTCVLWDITTGLR-----TSVFGGEFQSGHTADV---LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHGH  137 (267)
Q Consensus        67 ~d~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-~~~~~~  137 (267)
                      +||+|.-|...-...     ..++.    .+....+   ..+.-......++++-=.+++|.++|-....... ..+...
T Consensus       108 EdGTisaW~p~v~~t~~~~~~~~~d----~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       108 EDGTLSGWAPALGTTRMTRAEIVVD----ASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             CCceEEeecCcCCcccccccEEEEc----cCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            999999998643221     11221    1111222   2222223345666666678899999854321100 001000


Q ss_pred             --------------ccc--eeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc------
Q 024451          138 --------------EGD--VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI------  195 (267)
Q Consensus       138 --------------~~~--i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------  195 (267)
                                    .+.  |+-..-.+++..=+.+-.-|.|-+||+. ++.++.+... .....  ...++..|      
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-g~LNa--PWG~a~APa~FG~~  259 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-GRLNA--PWGLAIAPESFGSL  259 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC-CcccC--CceeeeChhhhCCC
Confidence                          000  0111111222222333344689999985 4544444221 11222  23444433      


Q ss_pred             CCCEEEEEEeCCeEEEEeCCccceeeeccccc--CCccceEEEEEECC
Q 024451          196 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCLGLSA  241 (267)
Q Consensus       196 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~~p  241 (267)
                      .+.+|+.-..||.|..||..+++.+-.+....  ..-...++.|+|-.
T Consensus       260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            46677777789999999987776543332110  01123578888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PHA03098 kelch-like protein; Provisional

Probab=92.64  E-value=6.8  Score=34.58  Aligned_cols=144  Identities=10%  Similarity=0.025  Sum_probs=64.6

Q ss_pred             CeeEEEeeCC-----CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC------CeEEEEeCCCc
Q 024451           59 DTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVA  127 (267)
Q Consensus        59 ~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d------~~i~iwd~~~~  127 (267)
                      +...+.||.+     ..+..||..+..-...-+  ...+.  .-.+++..  ++++++.||.+      ..+..||....
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~--lp~~r--~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~  416 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPP--LIFPR--YNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTN  416 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCC--cCcCC--ccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCC
Confidence            3456667655     346778877654322111  10111  11122222  45777877742      35777887532


Q ss_pred             ccceEEeeccccc--eeEEEEecCCCEEEEeeCCC--------cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC
Q 024451          128 SRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDDG--------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  197 (267)
Q Consensus       128 ~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d~--------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  197 (267)
                        ..........+  -.++. ..+++.++.||.+.        .+.+||+.+.+-...  ..... .......+.  .++
T Consensus       417 --~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~~-~r~~~~~~~--~~~  488 (534)
T PHA03098        417 --KWSKGSPLPISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL--SSLNF-PRINASLCI--FNN  488 (534)
T ss_pred             --eeeecCCCCccccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeC--CCCCc-ccccceEEE--ECC
Confidence              12222111100  11222 23556667776432        378888876542211  00000 011111222  256


Q ss_pred             CEEEEEEeC-----CeEEEEeCCc
Q 024451          198 RLLFAGYSN-----GDCYVWDTLL  216 (267)
Q Consensus       198 ~~l~~g~~d-----g~i~i~d~~~  216 (267)
                      ..++.|+.+     ..+..||..+
T Consensus       489 ~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        489 KIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             EEEEEcCCcCCcccceeEEEeCCC
Confidence            666666543     4677777654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=92.61  E-value=6.6  Score=34.32  Aligned_cols=159  Identities=20%  Similarity=0.252  Sum_probs=84.0

Q ss_pred             eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceE-EEEEeCCCCeEEEEec---------CCCeEEEEeCCCccc
Q 024451           60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGS---------CDSTARLWDTRVASR  129 (267)
Q Consensus        60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~s~~---------~d~~i~iwd~~~~~~  129 (267)
                      ..++.++.++.|..+|.++++.+..+...........+. +..+.  ++. ++.++         .++.+.-+|..+...
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKL-VIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCE-EEEeccccccccCCCCcEEEEEECCCCce
Confidence            357778899999999999998776654221000000011 11122  122 33332         357778888765443


Q ss_pred             ceEEeeccc-------------------cce-eEEEEecCCCEEEEeeCCC------------------cEEEEeCCCCe
Q 024451          130 AVRTFHGHE-------------------GDV-NTVKFFPDGNRFGTGSDDG------------------TCRLFDIRTGH  171 (267)
Q Consensus       130 ~~~~~~~~~-------------------~~i-~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~  171 (267)
                      ..+.-....                   ..+ ....+.+.+..++.++.++                  .+.-+|.++++
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            322111110                   011 1234455556677776554                  68888999988


Q ss_pred             eeEEEEeecCCC-----C-CCcEEEEEEccCCC---EEEEEEeCCeEEEEeCCccceeee
Q 024451          172 QLQVYYQQHGEN-----E-IPHVTSIAFSISGR---LLFAGYSNGDCYVWDTLLAKVVLN  222 (267)
Q Consensus       172 ~~~~~~~~~~~~-----~-~~~v~~~~~s~~~~---~l~~g~~dg~i~i~d~~~~~~~~~  222 (267)
                      ..-.+.......     . .+.+..+. ..++.   .+++++.+|.++.+|.++++.+..
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence            765442211100     0 00111111 12333   677888899999999888776543

The alignment model contains an 8-bladed beta-propeller.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.45  E-value=6.3  Score=34.09  Aligned_cols=139  Identities=14%  Similarity=0.180  Sum_probs=73.9

Q ss_pred             EEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-------EEEEeeCCCcEEEEeCCCCe-eeEEE--Ee
Q 024451          109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-------RFGTGSDDGTCRLFDIRTGH-QLQVY--YQ  178 (267)
Q Consensus       109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~~~-~~~~~--~~  178 (267)
                      ++..++....+.-.|++. .+.+.....|..-  -+.|.|+.+       .-+.|-.|..|.-.|.+-.. .+...  ..
T Consensus       482 i~~dg~~~~kLykmDIEr-GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKd  558 (776)
T COG5167         482 IYLDGGERDKLYKMDIER-GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKD  558 (776)
T ss_pred             EEecCCCcccceeeeccc-ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehh
Confidence            334455555566566653 3344444444432  456666432       12334455566556765432 22111  11


Q ss_pred             ecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEE
Q 024451          179 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW  258 (267)
Q Consensus       179 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w  258 (267)
                      ....+   ..++ .......++++++..|.|++||....+.-..    .++....|..+..+.+|+++++.+. .++.+-
T Consensus       559 Y~tKn---~Fss-~~tTesGyIa~as~kGDirLyDRig~rAKta----lP~lG~aIk~idvta~Gk~ilaTCk-~yllL~  629 (776)
T COG5167         559 YKTKN---KFSS-GMTTESGYIAAASRKGDIRLYDRIGKRAKTA----LPGLGDAIKHIDVTANGKHILATCK-NYLLLT  629 (776)
T ss_pred             ccccc---cccc-cccccCceEEEecCCCceeeehhhcchhhhc----CcccccceeeeEeecCCcEEEEeec-ceEEEE
Confidence            11111   1112 2234567999999999999999532221111    1345678999999999999876554 455444


Q ss_pred             e
Q 024451          259 A  259 (267)
Q Consensus       259 ~  259 (267)
                      +
T Consensus       630 d  630 (776)
T COG5167         630 D  630 (776)
T ss_pred             e
Confidence            4

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.25  E-value=0.67  Score=25.16  Aligned_cols=30  Identities=17%  Similarity=0.268  Sum_probs=24.9

Q ss_pred             ceEEEEEECCCC---CeEEEeECCCcEEEEecC
Q 024451          232 GRITCLGLSADG---SALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       232 ~~v~~~~~~p~~---~~l~sgs~dg~i~~w~~~  261 (267)
                      +.+.+++|+|+.   .+|+-.-.-|.|-|+|..
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            368899999854   488888888999999976

It contains a characteristic DLL sequence motif.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.90  E-value=5.4  Score=31.77  Aligned_cols=95  Identities=23%  Similarity=0.314  Sum_probs=55.6

Q ss_pred             EEEeCCCCeEEEEecCCCe-EEEEeCCCcccc-------eEEeeccccceeEEEEecCCCEEEEeeCC-----CcEEEEe
Q 024451          100 VSISGSNSRMFVSGSCDST-ARLWDTRVASRA-------VRTFHGHEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFD  166 (267)
Q Consensus       100 ~~~~~~~~~~~~s~~~d~~-i~iwd~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd  166 (267)
                      +.++|...+-++-+-.-|+ ..++|......+       -+.+-+|.      .|+|+|.+|...=.|     |-|-|||
T Consensus        73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd  146 (366)
T COG3490          73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYD  146 (366)
T ss_pred             eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEe
Confidence            4455555555555555554 456776533322       23445564      689999998765333     5699999


Q ss_pred             CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451          167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  204 (267)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~  204 (267)
                      .+.+-...--+.    ........+.+.+||+.++...
T Consensus       147 ~r~~fqrvgE~~----t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         147 AREGFQRVGEFS----THGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             cccccceecccc----cCCcCcceeEEecCCcEEEEeC
Confidence            875422211111    1222357788999999988763

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.81  E-value=7.2  Score=33.85  Aligned_cols=26  Identities=19%  Similarity=0.097  Sum_probs=20.4

Q ss_pred             eeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451          141 VNTVKFFPDGNRFGTGSDDGTCRLFD  166 (267)
Q Consensus       141 i~~~~~~~~~~~l~~~~~d~~i~iwd  166 (267)
                      |..+..++.|..++-.|.+|-+.+.=
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEc
Confidence            56778889999999888888766643

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=91.80  E-value=6  Score=32.06  Aligned_cols=154  Identities=15%  Similarity=0.149  Sum_probs=73.1

Q ss_pred             cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeee
Q 024451           95 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL  173 (267)
Q Consensus        95 ~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  173 (267)
                      ..+..+... +++++++++.......-||.-.  .....+. .-...|..+.|.|++...+. .+.+.|++=+...  ..
T Consensus       145 gs~~~~~r~-~dG~~vavs~~G~~~~s~~~G~--~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~--~~  218 (302)
T PF14870_consen  145 GSINDITRS-SDGRYVAVSSRGNFYSSWDPGQ--TTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPD--DG  218 (302)
T ss_dssp             --EEEEEE--TTS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TT--EE
T ss_pred             ceeEeEEEC-CCCcEEEEECcccEEEEecCCC--ccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCC--Cc
Confidence            445555555 4566666666655667787532  1222222 23467999999999877664 4888888876211  11


Q ss_pred             EEEEeecC--CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC
Q 024451          174 QVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  251 (267)
Q Consensus       174 ~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~  251 (267)
                      ..+.+...  ......+..++|.+++...++|.. |.+.. ....++.=.+.... ..-...+..+.|.++.+-++.| .
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~DgGktW~~~~~~-~~~~~n~~~i~f~~~~~gf~lG-~  294 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDGGKTWQKDRVG-ENVPSNLYRIVFVNPDKGFVLG-Q  294 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESSTTSS-EE-GGG-TTSSS---EEEEEETTEEEEE--S
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCCCccceECccc-cCCCCceEEEEEcCCCceEEEC-C
Confidence            22221111  112234789999999888887754 44432 22222211111000 1223457788887666677765 6


Q ss_pred             CCcEEEE
Q 024451          252 DTNLKIW  258 (267)
Q Consensus       252 dg~i~~w  258 (267)
                      +|.+.=|
T Consensus       295 ~G~ll~~  301 (302)
T PF14870_consen  295 DGVLLRY  301 (302)
T ss_dssp             TTEEEEE
T ss_pred             CcEEEEe
Confidence            7877655

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.59  E-value=1.3  Score=34.02  Aligned_cols=74  Identities=11%  Similarity=0.177  Sum_probs=47.3

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccccc-------CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI   76 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~   76 (267)
                      .+...+.+|++...+|.+.+||+......-....+...+.       .....|..+.+..++. -+++-+ +|....|+.
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCCEEEecc
Confidence            3567889999999999999999976322111112222232       3556788888876554 344443 467788877


Q ss_pred             CCC
Q 024451           77 TTG   79 (267)
Q Consensus        77 ~~~   79 (267)
                      .-+
T Consensus        95 ~L~   97 (219)
T PF07569_consen   95 DLG   97 (219)
T ss_pred             ccc
Confidence            644

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.17  E-value=12  Score=34.45  Aligned_cols=77  Identities=13%  Similarity=0.215  Sum_probs=50.2

Q ss_pred             ceeEEEEecCCCEEEEeeCCCcEEEEeC-CC---------Cee-eEE--EE---eecCCCCCCcEEEEEEccC---CCEE
Q 024451          140 DVNTVKFFPDGNRFGTGSDDGTCRLFDI-RT---------GHQ-LQV--YY---QQHGENEIPHVTSIAFSIS---GRLL  200 (267)
Q Consensus       140 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~-~~---------~~~-~~~--~~---~~~~~~~~~~v~~~~~s~~---~~~l  200 (267)
                      .|..+.++|+|.+++..|..+- .|-.+ +.         ++. +.+  +.   ..+..+....|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4788999999999998887554 33333 11         111 110  00   0111233456889999987   5789


Q ss_pred             EEEEeCCeEEEEeCCcc
Q 024451          201 FAGYSNGDCYVWDTLLA  217 (267)
Q Consensus       201 ~~g~~dg~i~i~d~~~~  217 (267)
                      ++=++|+.+++||+...
T Consensus       165 ~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEecCCEEEEEecCCC
Confidence            99999999999998643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.11  E-value=5.7  Score=38.16  Aligned_cols=147  Identities=18%  Similarity=0.289  Sum_probs=78.2

Q ss_pred             ecCCCeEEEEeCCCcccceEEeeccccceeEEEE-ec-------CCCEEEEeeCCCcEEEEeCC----CCeeeEEEEeec
Q 024451          113 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF-FP-------DGNRFGTGSDDGTCRLFDIR----TGHQLQVYYQQH  180 (267)
Q Consensus       113 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~-~~-------~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~  180 (267)
                      -+.|..+.+|+.+... ....+.+-...|..+.. .|       .=+++..-..--.|.++-+.    ++.. ..+....
T Consensus        95 iTiDn~L~lWny~~~~-e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~-~~f~~~~  172 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDN-ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL-SIFNTSF  172 (1311)
T ss_pred             EEeCCeEEEEEcCCCC-ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc-cccccce
Confidence            3567789999987533 33344443444544433 12       22333333333344443322    1111 0000000


Q ss_pred             -CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEE--eCC-------ccc----------eeeecccccCCccceEEEEEEC
Q 024451          181 -GENEIPHVTSIAFSISGRLLFAGYSNGDCYVW--DTL-------LAK----------VVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       181 -~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~--d~~-------~~~----------~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                       -......|.++....+|+.+++| .||.|+=.  ...       ..+          .+..+..+...+.++|..+++.
T Consensus       173 ~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID  251 (1311)
T KOG1900|consen  173 KISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID  251 (1311)
T ss_pred             eeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence             00112357788877888888887 55544322  111       011          0111222333567899999999


Q ss_pred             CCCCeEEEeECCCcEEEEecCc
Q 024451          241 ADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       241 p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ..-+.|.+-+.-|+|..|++++
T Consensus       252 ~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  252 NSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cccceeeeeccCceEEEEEccC
Confidence            8888999999999999999865

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.06  E-value=9.4  Score=32.91  Aligned_cols=110  Identities=15%  Similarity=0.096  Sum_probs=58.2

Q ss_pred             ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEE--EEeecCCCCCCcEEEEEEccCC------CEEEEEEe------
Q 024451          140 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV--YYQQHGENEIPHVTSIAFSISG------RLLFAGYS------  205 (267)
Q Consensus       140 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~------~~l~~g~~------  205 (267)
                      .-..++|.|++++|++--..|.|++++..++.....  +..............++++|+-      .+|...++      
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~  110 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK  110 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence            457899999998887655569999998654432111  1100001123457899999873      35555431      


Q ss_pred             ----CCeEEEEeCCc-------cceeeecccccCCccceEEEEEECCCCCeEEEeEC
Q 024451          206 ----NGDCYVWDTLL-------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  251 (267)
Q Consensus       206 ----dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~  251 (267)
                          ...|.-|.+..       .+.+.........|.+  ..|+|.|||++.++-+.
T Consensus       111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~G--grI~FgPDG~LYVs~GD  165 (454)
T TIGR03606       111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNG--GRLVFGPDGKIYYTIGE  165 (454)
T ss_pred             CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCC--ceEEECCCCcEEEEECC
Confidence                22343344321       1111111000123554  45779999987665443

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.05  E-value=2.7  Score=38.03  Aligned_cols=109  Identities=11%  Similarity=0.084  Sum_probs=67.2

Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCe--------eeEEEEee------cCCCCCCcEEEEEEc--cCCCEEEEEEeCCeEEEE
Q 024451          149 DGNRFGTGSDDGTCRLFDIRTGH--------QLQVYYQQ------HGENEIPHVTSIAFS--ISGRLLFAGYSNGDCYVW  212 (267)
Q Consensus       149 ~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~------~~~~~~~~v~~~~~s--~~~~~l~~g~~dg~i~i~  212 (267)
                      ....|+.|.+||.|.+|.++.--        ........      ...........++++  ...++||++++...|.+|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            45678899999999999864210        00000000      000011246778887  778899999888888887


Q ss_pred             eCCcc--ceeeecccccCCccceEEEEEECCCC---C---eEEEeECCCcEEEEec
Q 024451          213 DTLLA--KVVLNLGSLQNSHEGRITCLGLSADG---S---ALCTGSWDTNLKIWAF  260 (267)
Q Consensus       213 d~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~---~---~l~sgs~dg~i~~w~~  260 (267)
                      -....  +.... ..  ..|...|.+++|-++.   .   .+++++-.|.+.+|++
T Consensus       193 af~l~~~r~~~~-~s--~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHV-PS--HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccc-cc--cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            54331  11111 01  1244568889997653   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.00  E-value=1.7  Score=38.44  Aligned_cols=78  Identities=17%  Similarity=0.211  Sum_probs=41.6

Q ss_pred             CCCCeEEEccCCCeEEEeecCCCCCCCCCCc------------ccccc-------cCCeeeEEEEEEec---CCCeeEEE
Q 024451            7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLP------------VSRML-------SGHKGYVSCCQYVP---DEDTHLIT   64 (267)
Q Consensus         7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~------------~~~~~-------~~h~~~v~~~~~~~---~~~~~l~s   64 (267)
                      ++...++.+..||.+................            +...+       ..-.+.+......+   .+..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3566788888999988887764110000000            00000       01122333344433   23468999


Q ss_pred             eeCCCeEEEEeCCCCeeEEE
Q 024451           65 SSGDQTCVLWDITTGLRTSV   84 (267)
Q Consensus        65 ~~~d~~v~iwd~~~~~~~~~   84 (267)
                      -+.|+++|+||+.++..+..
T Consensus       236 l~~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEE
Confidence            99999999999999877443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.24  E-value=11  Score=32.16  Aligned_cols=155  Identities=13%  Similarity=0.178  Sum_probs=87.3

Q ss_pred             eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEE
Q 024451            5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV   84 (267)
Q Consensus         5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~   84 (267)
                      |.-..+.|++.. .|.+.-|-+..++   ..+|..... ..+++|.++.|++++ ..+|.--.|++|.+.+....+....
T Consensus        30 fDDaNkqlfavr-Sggatgvvvkgpn---dDVpiSfdm-~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~  103 (657)
T KOG2377|consen   30 FDDANKQLFAVR-SGGATGVVVKGPN---DDVPISFDM-DDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLE  103 (657)
T ss_pred             eccCcceEEEEe-cCCeeEEEEeCCC---CCCCceeee-cCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhH
Confidence            333344444433 3445666665543   122322222 245699999999976 5788889999999998843222211


Q ss_pred             eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee--CCCcE
Q 024451           85 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTC  162 (267)
Q Consensus        85 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i  162 (267)
                      +. ......+..|.-..|..+  ..++--... .+-+|.+.......+..+.|...|.-..|.++.+.+.-++  ..+.+
T Consensus       104 ~~-~~ck~k~~~IlGF~W~~s--~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l  179 (657)
T KOG2377|consen  104 YT-QECKTKNANILGFCWTSS--TEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL  179 (657)
T ss_pred             HH-HHhccCcceeEEEEEecC--eeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence            11 111223445777778754  333333332 3566665444445666677888888889988876543332  44444


Q ss_pred             EEEeCCC
Q 024451          163 RLFDIRT  169 (267)
Q Consensus       163 ~iwd~~~  169 (267)
                      .=+.+++
T Consensus       180 npf~~~~  186 (657)
T KOG2377|consen  180 NPFHFRA  186 (657)
T ss_pred             ccEEEee
Confidence            4444444

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.04  E-value=1.5  Score=40.34  Aligned_cols=141  Identities=17%  Similarity=0.223  Sum_probs=70.8

Q ss_pred             CeEEEEeCCCcc-c-----ceEEeeccccceeEEEEec---CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCC---
Q 024451          117 STARLWDTRVAS-R-----AVRTFHGHEGDVNTVKFFP---DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE---  184 (267)
Q Consensus       117 ~~i~iwd~~~~~-~-----~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---  184 (267)
                      |.+.||++..-. +     .+.........+.-+.|.|   +..++-.+-.++.+++........ ..+.. |....   
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs-Hs~~~~d~  230 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRS-HSQRVTDM  230 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHh-cCCCcccH
Confidence            567788764311 1     1222223334456667766   333444444677888766543221 11111 21110   


Q ss_pred             ----CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc-ceeeecccccCCcc-ceEEEEEECCCC---------CeEEEe
Q 024451          185 ----IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHE-GRITCLGLSADG---------SALCTG  249 (267)
Q Consensus       185 ----~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~~~~~~-~~v~~~~~~p~~---------~~l~sg  249 (267)
                          .+.+.--..||||..++..+.||.+.+|..... +........-+.|. .+-.|.-++.+.         .+++++
T Consensus       231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itt  310 (1283)
T KOG1916|consen  231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITT  310 (1283)
T ss_pred             HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEec
Confidence                011112237999999999999999999875432 22111111123444 344444344332         245555


Q ss_pred             EC-CCcEEEEe
Q 024451          250 SW-DTNLKIWA  259 (267)
Q Consensus       250 s~-dg~i~~w~  259 (267)
                      +. +..+++|.
T Consensus       311 td~nre~k~w~  321 (1283)
T KOG1916|consen  311 TDVNREEKFWA  321 (1283)
T ss_pred             ccCCcceeEee
Confidence            44 55688886

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=88.63  E-value=10  Score=29.83  Aligned_cols=101  Identities=19%  Similarity=0.195  Sum_probs=59.1

Q ss_pred             ceeEEEEecCCCEEEEee---CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEe-CC
Q 024451          140 DVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD-TL  215 (267)
Q Consensus       140 ~i~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d-~~  215 (267)
                      .+.+.+.+++++.++...   ....+.++...  ........      ...+..-+|++++...++...+....++. ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~------g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~   96 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT------GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA   96 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc------CCccccccccCCCCEEEEEcCCCceEEEEecC
Confidence            578899999998776655   23345555433  32222211      12456778999988777776666666663 22


Q ss_pred             cccee-eecccccCCccceEEEEEECCCCCeEEEeE
Q 024451          216 LAKVV-LNLGSLQNSHEGRITCLGLSADGSALCTGS  250 (267)
Q Consensus       216 ~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs  250 (267)
                      .++.. .... .. .-.+.|..+.+||||.-+|.-.
T Consensus        97 ~g~~~~~~v~-~~-~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen   97 SGTGEPVEVD-WP-GLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             CCcceeEEec-cc-ccCCceEEEEECCCCcEEEEEE
Confidence            22211 1111 11 1112899999999999777654

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.34  E-value=12  Score=30.07  Aligned_cols=208  Identities=13%  Similarity=0.088  Sum_probs=110.5

Q ss_pred             EEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc
Q 024451           49 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS  128 (267)
Q Consensus        49 v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~  128 (267)
                      ++-++|.+.+..+...+..+  .-+|..+-..  . +.+.-..+-...+.++.|+|...-+|++....-.|-=-+.  ..
T Consensus        45 ~f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~--~-i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~--~G  117 (316)
T COG3204          45 VFPCAWFKAGQTNGLDLSRY--IARYLLEYRA--R-IDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTK--EG  117 (316)
T ss_pred             eeeeEEEeccccccccccch--hhhccCCceE--E-EeccccccccccccceeeCCCcceEEEecCCCceEEEEec--CC
Confidence            34455555444333333333  4455543221  1 1122123445558899999866555555444434332232  33


Q ss_pred             cceEEeecc-ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEe-----ecCCCCCCcEEEEEEccCCCEEEE
Q 024451          129 RAVRTFHGH-EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ-----QHGENEIPHVTSIAFSISGRLLFA  202 (267)
Q Consensus       129 ~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~  202 (267)
                      ..++.+.-. -.....+++..+++++++-=.++.+-++.+...........     ............++|+|.+..+..
T Consensus       118 dlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~  197 (316)
T COG3204         118 DLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV  197 (316)
T ss_pred             ceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEE
Confidence            445443211 23346678887777777666788888887765432211111     011111234678999999999998


Q ss_pred             EEeCCeEEEEeCCccceeeec--ccccC----CccceEEEEEECCC-CCeEEEeECCCcEEEEecCce
Q 024451          203 GYSNGDCYVWDTLLAKVVLNL--GSLQN----SHEGRITCLGLSAD-GSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       203 g~~dg~i~i~d~~~~~~~~~~--~~~~~----~~~~~v~~~~~~p~-~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      .-+..-+.||...........  ...+.    -.-..|.++.|++. +.+|+.+..++.+.-.+..|-
T Consensus       198 aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         198 AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             EEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            888887888765433211111  00000    11235788888864 555666666766666665443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.25  E-value=3.6  Score=36.46  Aligned_cols=34  Identities=26%  Similarity=0.297  Sum_probs=26.3

Q ss_pred             eeEEEEec----CCCEEEEeeCCCcEEEEeCCCCeeeE
Q 024451          141 VNTVKFFP----DGNRFGTGSDDGTCRLFDIRTGHQLQ  174 (267)
Q Consensus       141 i~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~  174 (267)
                      +..+..++    +..++++.+.|+++|+||+.+++++.
T Consensus       217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA  254 (547)
T ss_dssp             EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred             cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence            44555555    66889999999999999999988744

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.17  E-value=9.8  Score=28.99  Aligned_cols=57  Identities=9%  Similarity=0.158  Sum_probs=36.3

Q ss_pred             CEEEEeeCCCcEEEEeCCCCeee-EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC---C---eEEEE
Q 024451          151 NRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---G---DCYVW  212 (267)
Q Consensus       151 ~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g---~i~i~  212 (267)
                      +.+..+.....|.+|++...... ..-+.     ..+.|..+.++..|+++++=-.+   .   .+++|
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-----Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-----TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-----chhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence            44444466678999999833222 21111     12468899999999999995432   2   66775

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.95  E-value=7.3  Score=33.81  Aligned_cols=80  Identities=20%  Similarity=0.325  Sum_probs=49.3

Q ss_pred             eeeCCCCCeEEEccCCCeEEEee---cCCCC-CCCCC--Ccc-----c-ccc-cCCeeeEEEEEEecCC--CeeEEEeeC
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFN---LNSPT-DKDGN--LPV-----S-RML-SGHKGYVSCCQYVPDE--DTHLITSSG   67 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~---~~~~~-~~~~~--~~~-----~-~~~-~~h~~~v~~~~~~~~~--~~~l~s~~~   67 (267)
                      +..++.|..++-+|.+|.+.++=   ..... ..++.  ..+     . +.+ ....-.+.-++|+|+.  +..|..-+.
T Consensus       109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~s  188 (741)
T KOG4460|consen  109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTS  188 (741)
T ss_pred             EEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEec
Confidence            34689999999999999887763   11111 11111  111     0 011 1111234557899986  678888899


Q ss_pred             CCeEEEEeCCCCeeE
Q 024451           68 DQTCVLWDITTGLRT   82 (267)
Q Consensus        68 d~~v~iwd~~~~~~~   82 (267)
                      |+++|+||+......
T Consensus       189 dnviRiy~lS~~tel  203 (741)
T KOG4460|consen  189 DNVIRIYSLSEPTEL  203 (741)
T ss_pred             CcEEEEEecCCcchh
Confidence            999999999765433

>PHA03098 kelch-like protein; Provisional

Probab=87.86  E-value=19  Score=31.87  Aligned_cols=103  Identities=17%  Similarity=0.144  Sum_probs=48.7

Q ss_pred             eeEEEeeCCC------eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-----eEEEEeCCCcc
Q 024451           60 THLITSSGDQ------TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTRVAS  128 (267)
Q Consensus        60 ~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-----~i~iwd~~~~~  128 (267)
                      ..++.|+.++      .+..||..+..-...-  ..... .. -.++...  ++++++.||.++     .+..||.... 
T Consensus       296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~-R~-~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~-  368 (534)
T PHA03098        296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP--ELIYP-RK-NPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGES-  368 (534)
T ss_pred             EEEEECCCcCCCCeeccEEEEeCCCCeeeECC--CCCcc-cc-cceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC-
Confidence            4566666542      4677887765432211  11001 11 1122222  457788887652     4566776532 


Q ss_pred             cceEEeecc--ccceeEEEEecCCCEEEEeeCC------CcEEEEeCCCCe
Q 024451          129 RAVRTFHGH--EGDVNTVKFFPDGNRFGTGSDD------GTCRLFDIRTGH  171 (267)
Q Consensus       129 ~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~  171 (267)
                       ........  ...-.+++ .-+++..+.||.+      ..+..||+.+.+
T Consensus       369 -~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        369 -KWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             -ceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence             22222111  11111222 2356667777732      357888887654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=87.18  E-value=12  Score=29.00  Aligned_cols=105  Identities=18%  Similarity=0.205  Sum_probs=66.5

Q ss_pred             cceeEEEEecCCCEEE-EeeCCCcEEEEe--CCCCee-----eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEE
Q 024451          139 GDVNTVKFFPDGNRFG-TGSDDGTCRLFD--IRTGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY  210 (267)
Q Consensus       139 ~~i~~~~~~~~~~~l~-~~~~d~~i~iwd--~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~  210 (267)
                      +.-+.++|+.+.+.|. +-+.+-+|.-||  ..++..     +-.+.... ..+....-.++.+..|...++..+.|.|.
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~-~~e~~~PDGm~ID~eG~L~Va~~ng~~V~  236 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ-PFESLEPDGMTIDTEGNLYVATFNGGTVQ  236 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC-CcCCCCCCcceEccCCcEEEEEecCcEEE
Confidence            3346788887776654 456677887788  555432     11111111 11111223455577889999999999999


Q ss_pred             EEeCCccceeeecccccCCccceEEEEEEC-CCCCeEEE
Q 024451          211 VWDTLLAKVVLNLGSLQNSHEGRITCLGLS-ADGSALCT  248 (267)
Q Consensus       211 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~s  248 (267)
                      ..|..+++.+..+..    -...|+|++|- |+-..|.+
T Consensus       237 ~~dp~tGK~L~eikl----Pt~qitsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  237 KVDPTTGKILLEIKL----PTPQITSCCFGGKNLDILYV  271 (310)
T ss_pred             EECCCCCcEEEEEEc----CCCceEEEEecCCCccEEEE
Confidence            999999998876632    24578999996 55445443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.02  E-value=18  Score=30.73  Aligned_cols=223  Identities=17%  Similarity=0.153  Sum_probs=104.5

Q ss_pred             eeeCCCCCeEEEc-----cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC----------
Q 024451            3 CAFSPTGQSVACG-----GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG----------   67 (267)
Q Consensus         3 ~~~~~~g~~l~~~-----~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----------   67 (267)
                      .+++|+|++++-+     +...++++.|+....      .+...+..  ..-..+.|.+++..++.+.-.          
T Consensus       129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~------~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK------FLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEETTTSSEEEEEEEETTSSEEEEEEEETTTTE------EEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             eeECCCCCEEEEEecCCCCceEEEEEEECCCCc------CcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            4689999988753     334568999987531      11111111  111238899987665555432          


Q ss_pred             CCeEEEEeCCCCeeE--EEeCCccccCCccc-eEEEEEeCCCCeEEEEecCC---CeEEEEeCCCc---ccceEEeeccc
Q 024451           68 DQTCVLWDITTGLRT--SVFGGEFQSGHTAD-VLSVSISGSNSRMFVSGSCD---STARLWDTRVA---SRAVRTFHGHE  138 (267)
Q Consensus        68 d~~v~iwd~~~~~~~--~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~s~~~d---~~i~iwd~~~~---~~~~~~~~~~~  138 (267)
                      ...|+.|++.+....  .++...    .... ...+..+.....+++.....   ..+.+.+....   ......+..+.
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~----~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~  276 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEP----DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE  276 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-T----TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred             CcEEEEEECCCChHhCeeEEeec----CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence            234788888776432  344321    2222 45666776544444444333   34777777642   22344444444


Q ss_pred             cceeEEEEecCCCEEEEe---eCCCcEEEEeCCCCee---eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCC--eE
Q 024451          139 GDVNTVKFFPDGNRFGTG---SDDGTCRLFDIRTGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNG--DC  209 (267)
Q Consensus       139 ~~i~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg--~i  209 (267)
                      ..+....-+..+.+++..   ...+.|.-.++.....   ...+.. +..  ...+..+  ...+.+|+... .++  .|
T Consensus       277 ~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~-~~~--~~~l~~~--~~~~~~Lvl~~~~~~~~~l  351 (414)
T PF02897_consen  277 DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP-EDE--DVSLEDV--SLFKDYLVLSYRENGSSRL  351 (414)
T ss_dssp             SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SS--SEEEEEE--EEETTEEEEEEEETTEEEE
T ss_pred             CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcC-CCC--ceeEEEE--EEECCEEEEEEEECCccEE
Confidence            444333333333333322   2345666677766542   112222 111  1123333  44455565554 444  78


Q ss_pred             EEEeCCccceeeecccccCCccceEEEEEECCCCCe
Q 024451          210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA  245 (267)
Q Consensus       210 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  245 (267)
                      ++++...........   ..-.+.|..+...++++.
T Consensus       352 ~v~~~~~~~~~~~~~---~p~~g~v~~~~~~~~~~~  384 (414)
T PF02897_consen  352 RVYDLDDGKESREIP---LPEAGSVSGVSGDFDSDE  384 (414)
T ss_dssp             EEEETT-TEEEEEEE---SSSSSEEEEEES-TT-SE
T ss_pred             EEEECCCCcEEeeec---CCcceEEeccCCCCCCCE
Confidence            888877222222221   112344556655555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=86.92  E-value=28  Score=32.86  Aligned_cols=241  Identities=14%  Similarity=0.122  Sum_probs=109.3

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS   83 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~   83 (267)
                      +|--|..+|.++..||.+.-|.+...+.+   ..-.+...--+.++.--.|...+.+.++++ .|+...+|-.+.. ...
T Consensus       590 ~~e~d~~yLlvalgdG~l~~fv~d~~tg~---lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~-sdrP~viY~~n~k-Lv~  664 (1096)
T KOG1897|consen  590 TFEGDIHYLLVALGDGALLYFVLDINTGQ---LSDRKKVTLGTQPISLRTFSSKSRTAVFAL-SDRPTVIYSSNGK-LVY  664 (1096)
T ss_pred             EeeccceEEEEEcCCceEEEEEEEcccce---EccccccccCCCCcEEEEEeeCCceEEEEe-CCCCEEEEecCCc-EEE
Confidence            34456789999999999998877653221   111111111234444445555455555544 4555555544321 111


Q ss_pred             EeCCccccCCccceEEEE-EeCC-CCeEEEEecCCCeEEEEeCCCc-ccceEEeeccccceeEEEEecCCCEEEEeeC--
Q 024451           84 VFGGEFQSGHTADVLSVS-ISGS-NSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD--  158 (267)
Q Consensus        84 ~~~~~~~~~~~~~i~~~~-~~~~-~~~~~~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  158 (267)
                       -+.     .-..+..++ ++.+ ...-+++ ...+.+++..+..- +..++...- ......+++.+....+.+.+.  
T Consensus       665 -spl-----s~kev~~~c~f~s~a~~d~l~~-~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~  736 (1096)
T KOG1897|consen  665 -SPL-----SLKEVNHMCPFNSDAYPDSLAS-ANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRI  736 (1096)
T ss_pred             -ecc-----chHHhhhhcccccccCCceEEE-ecCCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEeccc
Confidence             000     000111111 1111 1122333 33445666654321 112333222 233455666653333333321  


Q ss_pred             ---------C---CcEEEEeCCCCeeeEEEEeecCCCC-CCcEEEEEEccC-CCEEEEEEe----------CCeEEEEeC
Q 024451          159 ---------D---GTCRLFDIRTGHQLQVYYQQHGENE-IPHVTSIAFSIS-GRLLFAGYS----------NGDCYVWDT  214 (267)
Q Consensus       159 ---------d---~~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~-~~~l~~g~~----------dg~i~i~d~  214 (267)
                               .   ..++++|-.+-+.+....  ....+ ...+.++.|..+ +.++++|..          .|.|.+|..
T Consensus       737 e~~~~~~~ee~~~s~l~vlD~nTf~vl~~he--f~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~  814 (1096)
T KOG1897|consen  737 ESSAEYYGEEYEVSFLRVLDQNTFEVLSSHE--FERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEF  814 (1096)
T ss_pred             ccchhhcCCcceEEEEEEecCCceeEEeecc--ccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEE
Confidence                     1   136666665543332111  11111 123445558766 778888864          466666655


Q ss_pred             CccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          215 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      .....+.....  ..-.+.+.++.. .+|++||.  -+..|++|+...-+
T Consensus       815 ~e~~~L~~v~e--~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~  859 (1096)
T KOG1897|consen  815 EELNSLELVAE--TVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTER  859 (1096)
T ss_pred             ecCCceeeeee--eeeccceeehhh-hCCeEEEe--cCcEEEEEEccccc
Confidence            44222211111  112344444432 46888774  56789999876543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.63  E-value=12  Score=28.45  Aligned_cols=181  Identities=14%  Similarity=0.094  Sum_probs=77.7

Q ss_pred             CeeEEEeeCC--CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec
Q 024451           59 DTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG  136 (267)
Q Consensus        59 ~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~  136 (267)
                      +.++.+.+.-  ..|+.||+.+++..............+-+..     ..+.+..-.-.+|....+|.+.-. .+..+. 
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~-~lg~~~-  128 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLE-ELGRFS-  128 (262)
T ss_pred             CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-----ccceEEEEEeccceeEEEChHHhh-hhcccc-
Confidence            3455565543  4699999998765443221100000011111     122333444556666677654321 122111 


Q ss_pred             cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451          137 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  216 (267)
Q Consensus       137 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~  216 (267)
                      .++.=..+.  .+++.++.+....++..-|.++-.......-.........+.-+.| .+|...|=-..+-.|...|..+
T Consensus       129 y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~s  205 (262)
T COG3823         129 YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDS  205 (262)
T ss_pred             cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCC
Confidence            122234444  3444455544445666666654322211111100000011222222 1333333333333333334444


Q ss_pred             cceeee--------cccccCCccceEEEEEECCCC-CeEEEe
Q 024451          217 AKVVLN--------LGSLQNSHEGRITCLGLSADG-SALCTG  249 (267)
Q Consensus       217 ~~~~~~--------~~~~~~~~~~~v~~~~~~p~~-~~l~sg  249 (267)
                      ++....        .......+....+.+++.|++ +++++|
T Consensus       206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            433211        112234466678899999987 677776

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.57  E-value=9.5  Score=28.03  Aligned_cols=30  Identities=13%  Similarity=0.202  Sum_probs=24.7

Q ss_pred             ceEEEEEECCCC------CeEEEeECCCcEEEEecC
Q 024451          232 GRITCLGLSADG------SALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       232 ~~v~~~~~~p~~------~~l~sgs~dg~i~~w~~~  261 (267)
                      ..+..++|||-|      -+||+.+.++.+.||.-.
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            478999999954      378889999999999644

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=86.19  E-value=14  Score=28.70  Aligned_cols=100  Identities=16%  Similarity=0.234  Sum_probs=61.2

Q ss_pred             EEEEeCCCCeEEEEecCCCeEEEEeCCCcc------cceEEee---ccccc-eeEEEEecCCCEEEEeeCCCcEEEEeCC
Q 024451           99 SVSISGSNSRMFVSGSCDSTARLWDTRVAS------RAVRTFH---GHEGD-VNTVKFFPDGNRFGTGSDDGTCRLFDIR  168 (267)
Q Consensus        99 ~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~------~~~~~~~---~~~~~-i~~~~~~~~~~~l~~~~~d~~i~iwd~~  168 (267)
                      .+.|+.....+..+-+.+-.|.-||.....      +.+..++   ..... -..++...+|++.+++-..++|...|+.
T Consensus       162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~  241 (310)
T KOG4499|consen  162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT  241 (310)
T ss_pred             cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence            455665555666777778788888733211      1111111   11111 1234445678899999999999999999


Q ss_pred             CCeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEE
Q 024451          169 TGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAG  203 (267)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g  203 (267)
                      +++.+..+.-.     ...++++||-- +-..+.+.
T Consensus       242 tGK~L~eiklP-----t~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  242 TGKILLEIKLP-----TPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             CCcEEEEEEcC-----CCceEEEEecCCCccEEEEE
Confidence            99988766432     34689999963 33344433

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=85.92  E-value=21  Score=30.49  Aligned_cols=146  Identities=12%  Similarity=0.144  Sum_probs=80.0

Q ss_pred             CCeEEEEecCCCeEEEEeCCCcccce-EEe--eccccceeEEEEec-----CCCEEEEeeCCCcEEEEeCCCC-------
Q 024451          106 NSRMFVSGSCDSTARLWDTRVASRAV-RTF--HGHEGDVNTVKFFP-----DGNRFGTGSDDGTCRLFDIRTG-------  170 (267)
Q Consensus       106 ~~~~~~s~~~d~~i~iwd~~~~~~~~-~~~--~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~-------  170 (267)
                      +...++.|+..|.++|++........ ..+  ..-+.+|-.++.-+     ....||. =.-+++.+|.+...       
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            34578899999999999875432111 111  11245666665432     1223333 23356666766211       


Q ss_pred             --eeeEEEEeecCCCCCCcEEEEE---Ec-cC-CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC
Q 024451          171 --HQLQVYYQQHGENEIPHVTSIA---FS-IS-GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  243 (267)
Q Consensus       171 --~~~~~~~~~~~~~~~~~v~~~~---~s-~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  243 (267)
                        -.+...++++...   ....++   |- .. ..++.+-+.||.+.+|+.........+..  ....+|   +++.|.-
T Consensus       115 ~~~~L~~~yeh~l~~---~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~--~llPgP---l~Y~~~t  186 (418)
T PF14727_consen  115 NQYQLELIYEHSLQR---TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD--FLLPGP---LCYCPRT  186 (418)
T ss_pred             cEEEEEEEEEEeccc---ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC--CCCCcC---eEEeecC
Confidence              1222333332211   112222   22 12 35788889999999999665432222211  223343   4577777


Q ss_pred             CeEEEeECCCcEEEEec
Q 024451          244 SALCTGSWDTNLKIWAF  260 (267)
Q Consensus       244 ~~l~sgs~dg~i~~w~~  260 (267)
                      ..|++++.+..+.-|++
T Consensus       187 Dsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  187 DSFVTASSSWTLECYKY  203 (418)
T ss_pred             CEEEEecCceeEEEecH
Confidence            88888888888888876

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=85.75  E-value=20  Score=30.03  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=52.3

Q ss_pred             cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCe----eeEEEEeecCCC---CCCcEEEEEEccCCCEEEEEEeC-----
Q 024451          139 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH----QLQVYYQQHGEN---EIPHVTSIAFSISGRLLFAGYSN-----  206 (267)
Q Consensus       139 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~g~~d-----  206 (267)
                      .....+++.+++ ++++ ....-.++.|.....    ....+.......   .......++|.|+|.+.++-+..     
T Consensus        72 ~~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~  149 (367)
T TIGR02604        72 SMVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV  149 (367)
T ss_pred             CCccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence            345778888888 5554 444433444543210    112222211111   11235688999998866653311     


Q ss_pred             --------------CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEe
Q 024451          207 --------------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  249 (267)
Q Consensus       207 --------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg  249 (267)
                                    |.+.-+|....+... +   ... ......++|+|+|+++++-
T Consensus       150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~-~---a~G-~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       150 TRPGTSDESRQGLGGGLFRYNPDGGKLRV-V---AHG-FQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             ccCCCccCcccccCceEEEEecCCCeEEE-E---ecC-cCCCccceECCCCCEEEEc
Confidence                          344445543322211 1   111 2234679999999988763

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=85.23  E-value=17  Score=28.79  Aligned_cols=191  Identities=13%  Similarity=0.162  Sum_probs=102.4

Q ss_pred             eeEEEEEEecCCCeeEEEeeCCC--eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeC
Q 024451           47 GYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  124 (267)
Q Consensus        47 ~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~  124 (267)
                      .....+.|..++ .++-|.+.-|  .|+.+|+.+++........    ..-.-.-++..  +++++.-.-.++...+||.
T Consensus        45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~----~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~  117 (264)
T PF05096_consen   45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLP----PRYFGEGITIL--GDKLYQLTWKEGTGFVYDP  117 (264)
T ss_dssp             -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-T----TT--EEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred             ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECC----ccccceeEEEE--CCEEEEEEecCCeEEEEcc
Confidence            444556675543 5666766655  6999999998654433211    11112233343  4566666778889999998


Q ss_pred             CCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451          125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  204 (267)
Q Consensus       125 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~  204 (267)
                      .. -+.+..+. ..+.=..++  .+++.|+.......+.++|..+-+....+.-.........+.-+.+- +|...|=-.
T Consensus       118 ~t-l~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW  192 (264)
T PF05096_consen  118 NT-LKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW  192 (264)
T ss_dssp             TT-TEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred             cc-ceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence            64 33444443 233445555  45666665555668999998776554443322222222345566664 565555556


Q ss_pred             eCCeEEEEeCCccceeeecc--cc---------cCCccceEEEEEECCCCC-eEEEe
Q 024451          205 SNGDCYVWDTLLAKVVLNLG--SL---------QNSHEGRITCLGLSADGS-ALCTG  249 (267)
Q Consensus       205 ~dg~i~i~d~~~~~~~~~~~--~~---------~~~~~~~v~~~~~~p~~~-~l~sg  249 (267)
                      ....|...|..+++....+.  .+         ........+.+|+.|..+ +++||
T Consensus       193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            66777777877776543221  00         011246789999988655 45554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA02790 Kelch-like protein; Provisional

Probab=84.96  E-value=26  Score=30.64  Aligned_cols=100  Identities=8%  Similarity=0.008  Sum_probs=47.7

Q ss_pred             CeeEEEeeCC--CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC---eEEEEeCCCcccceEE
Q 024451           59 DTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRT  133 (267)
Q Consensus        59 ~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~---~i~iwd~~~~~~~~~~  133 (267)
                      +...+.||.+  .++..||..+..-...-+  ..  ....-.++...  ++++++.||.++   .+..||.+...  ...
T Consensus       319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~--l~--~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~--W~~  390 (480)
T PHA02790        319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPS--LL--KPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQ--WQF  390 (480)
T ss_pred             CEEEEECCcCCCCceEEEECCCCeEEECCC--CC--CCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCE--EEe
Confidence            3455666653  457788876543222111  11  11111122222  467888888654   35677765321  221


Q ss_pred             eec---cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCe
Q 024451          134 FHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH  171 (267)
Q Consensus       134 ~~~---~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  171 (267)
                      ...   .... .+++ .-+++..+.|+   .+.+||.++.+
T Consensus       391 ~~~m~~~r~~-~~~~-~~~~~IYv~GG---~~e~ydp~~~~  426 (480)
T PHA02790        391 GPSTYYPHYK-SCAL-VFGRRLFLVGR---NAEFYCESSNT  426 (480)
T ss_pred             CCCCCCcccc-ceEE-EECCEEEEECC---ceEEecCCCCc
Confidence            111   1111 1222 23556666664   57789887654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=84.70  E-value=28  Score=30.90  Aligned_cols=117  Identities=10%  Similarity=0.146  Sum_probs=67.3

Q ss_pred             cceEEEEEeCCC---CeEEEEecCCCeEEEEeCCCc----ccceEEeec-ccc--ce--eEEEEecCCCEEEEeeCCCcE
Q 024451           95 ADVLSVSISGSN---SRMFVSGSCDSTARLWDTRVA----SRAVRTFHG-HEG--DV--NTVKFFPDGNRFGTGSDDGTC  162 (267)
Q Consensus        95 ~~i~~~~~~~~~---~~~~~s~~~d~~i~iwd~~~~----~~~~~~~~~-~~~--~i--~~~~~~~~~~~l~~~~~d~~i  162 (267)
                      +.|..+.|.|..   ..-+++..-.+.|.||.+...    .+....... ...  ++  ..+.|||....++.-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            346777787642   223455666778999987521    111111111 111  11  357899988888776655444


Q ss_pred             EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCC
Q 024451          163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTL  215 (267)
Q Consensus       163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~  215 (267)
                      .+++++........    .....+.|.+.||.+||+.|+++- +.=+-++||-.
T Consensus       137 V~~sV~~d~srVka----Di~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  137 VLPSVHCDSSRVKA----DIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EeeeeeeCCceEEE----eccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            45555433221111    122345799999999999876654 34577899843

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.46  E-value=23  Score=29.65  Aligned_cols=52  Identities=13%  Similarity=0.056  Sum_probs=26.8

Q ss_pred             CCEEEEEEeCCeEEEEeCCccc-eee-ecccccCCcc--ceEEEEEECCCCCeEEE
Q 024451          197 GRLLFAGYSNGDCYVWDTLLAK-VVL-NLGSLQNSHE--GRITCLGLSADGSALCT  248 (267)
Q Consensus       197 ~~~l~~g~~dg~i~i~d~~~~~-~~~-~~~~~~~~~~--~~v~~~~~~p~~~~l~s  248 (267)
                      +.++++....+.|..+.+.... ... ....+.....  .+...+.+.|||.+.++
T Consensus       282 g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~  337 (367)
T TIGR02604       282 GLLLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVS  337 (367)
T ss_pred             CCEEeeeccCCEEEEEEeecCCCccEeecCceEecCCCcccccceeECCCCCEEEE
Confidence            5566666666666666553211 010 1011111111  35677999999987765

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.42  E-value=0.16  Score=42.98  Aligned_cols=138  Identities=12%  Similarity=0.225  Sum_probs=87.2

Q ss_pred             EeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEE-eeCCCcEEEEeCCCCeeeEEEEeec
Q 024451          102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT-GSDDGTCRLFDIRTGHQLQVYYQQH  180 (267)
Q Consensus       102 ~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~  180 (267)
                      |-+.+.. ++.++.+-.+..||-.  ....... ...+....++|..++..++. +-..+.+-+||+.+...-+.-    
T Consensus        42 w~~e~~n-lavaca~tiv~~YD~a--gq~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE----  113 (615)
T KOG2247|consen   42 WRPEGHN-LAVACANTIVIYYDKA--GQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE----  113 (615)
T ss_pred             EecCCCc-eehhhhhhHHHhhhhh--cceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh----
Confidence            4433333 6677778888888853  2222222 23445667788777766544 456789999999764321110    


Q ss_pred             CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451          181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  253 (267)
Q Consensus       181 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg  253 (267)
                       .+....-.-+.|++....++.|...|.+.+|+..+.+....+    ..|..+++++++.+.+. .+.++.|.
T Consensus       114 -~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~----Gkh~RRgtq~av~lEd~-vil~dcd~  180 (615)
T KOG2247|consen  114 -SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM----GKHQRRGTQIAVTLEDY-VILCDCDN  180 (615)
T ss_pred             -ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh----cccccceeEEEecccce-eeecCcHH
Confidence             011111122568888899999999999999998776655433    34888999999998764 44455544

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=84.22  E-value=29  Score=30.72  Aligned_cols=195  Identities=15%  Similarity=0.163  Sum_probs=100.2

Q ss_pred             eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccc-----e-EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe
Q 024451           61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD-----V-LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF  134 (267)
Q Consensus        61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-----i-~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~  134 (267)
                      .++.++.++.|.-.|..+++.+..+...........     + ..+.+.  ++ .++.++.|+.+.-.|.++.+...+.-
T Consensus        71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~-~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DG-KVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CC-EEEEEcCCCEEEEEECCCCCEEeecc
Confidence            567777788899999999877665532211000000     0 012222  23 34567778888888877554332211


Q ss_pred             eccccceeEEEEec--CCCEEEEee------CCCcEEEEeCCCCeeeEEEEeecCCC-----------------------
Q 024451          135 HGHEGDVNTVKFFP--DGNRFGTGS------DDGTCRLFDIRTGHQLQVYYQQHGEN-----------------------  183 (267)
Q Consensus       135 ~~~~~~i~~~~~~~--~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~-----------------------  183 (267)
                      ......-..+.-.|  .+..++.+.      .++.|.-+|.++++.+-.+.......                       
T Consensus       148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~  227 (527)
T TIGR03075       148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA  227 (527)
T ss_pred             cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence            11100001111112  123444443      26889999999998765432211100                       


Q ss_pred             ---CCCcE-EEEEEccCCCEEEEEEeC-----C-----------eEEEEeCCccceeeecccccCCcc-------ceEEE
Q 024451          184 ---EIPHV-TSIAFSISGRLLFAGYSN-----G-----------DCYVWDTLLAKVVLNLGSLQNSHE-------GRITC  236 (267)
Q Consensus       184 ---~~~~v-~~~~~s~~~~~l~~g~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~~~-------~~v~~  236 (267)
                         ....+ ...++++....+..+..+     +           .|.-.|+++++....+...  .|.       ..-.-
T Consensus       228 ~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~--~~D~wD~d~~~~p~l  305 (527)
T TIGR03075       228 WKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTT--PHDEWDYDGVNEMIL  305 (527)
T ss_pred             cccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCC--CCCCccccCCCCcEE
Confidence               00111 234667777777666533     2           4555677777765443221  121       11112


Q ss_pred             EEECCCCC---eEEEeECCCcEEEEec
Q 024451          237 LGLSADGS---ALCTGSWDTNLKIWAF  260 (267)
Q Consensus       237 ~~~~p~~~---~l~sgs~dg~i~~w~~  260 (267)
                      +.+..+|+   .++.+.++|.+.+.|-
T Consensus       306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr  332 (527)
T TIGR03075       306 FDLKKDGKPRKLLAHADRNGFFYVLDR  332 (527)
T ss_pred             EEeccCCcEEEEEEEeCCCceEEEEEC
Confidence            33335666   7888999998888874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA02790 Kelch-like protein; Provisional

Probab=83.53  E-value=30  Score=30.25  Aligned_cols=180  Identities=12%  Similarity=0.081  Sum_probs=81.9

Q ss_pred             CeeEEEeeCCC-----eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--eEEEEeCCCcccce
Q 024451           59 DTHLITSSGDQ-----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAV  131 (267)
Q Consensus        59 ~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~  131 (267)
                      +..++.||.++     ++..||..+..-...-+..    ....-.++...  ++++++.||.++  .+..||....  ..
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~----~~r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n--~W  343 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN----SPRLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDA--AW  343 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCC----chhhcceEEEE--CCEEEEECCcCCCCceEEEECCCC--eE
Confidence            34566676543     4667887765432221110    11111122222  467888888643  4677776432  12


Q ss_pred             EEeeccccce-eEEEEecCCCEEEEeeCCC---cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC
Q 024451          132 RTFHGHEGDV-NTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG  207 (267)
Q Consensus       132 ~~~~~~~~~i-~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg  207 (267)
                      .....-..+. ......-+++..+.||.++   .+..||.++.+-..     ......+.....+..-++...+.|   |
T Consensus       344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~-----~~~m~~~r~~~~~~~~~~~IYv~G---G  415 (480)
T PHA02790        344 VNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF-----GPSTYYPHYKSCALVFGRRLFLVG---R  415 (480)
T ss_pred             EECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe-----CCCCCCccccceEEEECCEEEEEC---C
Confidence            2221111111 1111223577777777553   46778887643211     111111111111123456666666   3


Q ss_pred             eEEEEeCCccc--eeeecccccCCccceEEEEEECCCCCeEEEeECC-----CcEEEEec
Q 024451          208 DCYVWDTLLAK--VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKIWAF  260 (267)
Q Consensus       208 ~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-----g~i~~w~~  260 (267)
                      .+..||..+.+  .+..+.   .....  .+++. .+|++.+.|+.+     ..+..||.
T Consensus       416 ~~e~ydp~~~~W~~~~~m~---~~r~~--~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~  469 (480)
T PHA02790        416 NAEFYCESSNTWTLIDDPI---YPRDN--PELII-VDNKLLLIGGFYRGSYIDTIEVYNN  469 (480)
T ss_pred             ceEEecCCCCcEeEcCCCC---CCccc--cEEEE-ECCEEEEECCcCCCcccceEEEEEC
Confidence            46678865432  222221   11111  12222 367888888765     24556654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=82.97  E-value=33  Score=30.40  Aligned_cols=157  Identities=17%  Similarity=0.129  Sum_probs=83.9

Q ss_pred             eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceE-EEEEeCCCCeEEEEec-----CCCeEEEEeCCCcccceEEe
Q 024451           61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGS-----CDSTARLWDTRVASRAVRTF  134 (267)
Q Consensus        61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~s~~-----~d~~i~iwd~~~~~~~~~~~  134 (267)
                      .++.++.|+.|.-.|..+++.+......... ....+. +-.+.  ++.+++..+     .+|.|.-+|.++++...+..
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~-~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYK-AGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeeccccccc-ccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            4677888999999999999876554321000 000111 11111  234433221     36788888876544322211


Q ss_pred             ec-----------------------------c-cccee-EEEEecCCCEEEEee-C----CC-----------cEEEEeC
Q 024451          135 HG-----------------------------H-EGDVN-TVKFFPDGNRFGTGS-D----DG-----------TCRLFDI  167 (267)
Q Consensus       135 ~~-----------------------------~-~~~i~-~~~~~~~~~~l~~~~-~----d~-----------~i~iwd~  167 (267)
                      ..                             + ...+. ...+.|..+++..+. .    ++           +|.-.|.
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~  278 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP  278 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence            10                             0 01121 346666555555443 1    12           5667788


Q ss_pred             CCCeeeEEEEeecCCCCC----CcEEEEEEccCCC---EEEEEEeCCeEEEEeCCcccee
Q 024451          168 RTGHQLQVYYQQHGENEI----PHVTSIAFSISGR---LLFAGYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~---~l~~g~~dg~i~i~d~~~~~~~  220 (267)
                      ++++..-.+...+.....    ....-+....+|+   .++.+..+|.+++.|..+++.+
T Consensus       279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            888876655432221110    1112223335665   7788999999999999888765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=82.86  E-value=27  Score=29.33  Aligned_cols=156  Identities=17%  Similarity=0.248  Sum_probs=68.8

Q ss_pred             eEEEEEeCCCCeEEEE---ecCCCe-EEEEeCCCcccceEEeeccc--cceeEEEEecCCCEEEE-----eeCCCcEEEE
Q 024451           97 VLSVSISGSNSRMFVS---GSCDST-ARLWDTRVASRAVRTFHGHE--GDVNTVKFFPDGNRFGT-----GSDDGTCRLF  165 (267)
Q Consensus        97 i~~~~~~~~~~~~~~s---~~~d~~-i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~-----~~~d~~i~iw  165 (267)
                      +.-+-++|.+..++.-   |-.+.. -|||=++......+.+..+.  ..+.-=-|.|+|+.+.-     ++.+..|.-+
T Consensus       190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~  269 (386)
T PF14583_consen  190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY  269 (386)
T ss_dssp             EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred             ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence            4456677766555544   334442 47886654443333333222  22333456888876542     2345567778


Q ss_pred             eCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC----------------eEEEEeCCccceeeecc---cc
Q 024451          166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----------------DCYVWDTLLAKVVLNLG---SL  226 (267)
Q Consensus       166 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg----------------~i~i~d~~~~~~~~~~~---~~  226 (267)
                      |+.+++.... ...      +....+--+++|.+++.=+.|.                .|++++.+..+...-..   ++
T Consensus       270 d~~t~~~~~~-~~~------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw  342 (386)
T PF14583_consen  270 DPDTGERRRL-MEM------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSW  342 (386)
T ss_dssp             -TTT--EEEE-EEE-------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-----
T ss_pred             CCCCCCceEE-EeC------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcc
Confidence            8887754332 111      1344555578888776533331                45667776544321000   00


Q ss_pred             --cCCccc-eEEEEEECCCCCeEEE-eECCCcEEEEe
Q 024451          227 --QNSHEG-RITCLGLSADGSALCT-GSWDTNLKIWA  259 (267)
Q Consensus       227 --~~~~~~-~v~~~~~~p~~~~l~s-gs~dg~i~~w~  259 (267)
                        ...+.. .=....|+|||++++- ...+|...||.
T Consensus       343 ~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  343 KVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             --BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             eeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence              000100 1134789999998764 55588888875

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.28  E-value=41  Score=32.82  Aligned_cols=155  Identities=13%  Similarity=0.181  Sum_probs=82.3

Q ss_pred             EEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCC-------CeEEEEecCCCeEEEEe
Q 024451           51 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN-------SRMFVSGSCDSTARLWD  123 (267)
Q Consensus        51 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~s~~~d~~i~iwd  123 (267)
                      .+.+.|.-.+  +=.+-|+.+.+|+.+++.....+.     +-+..|..|...-+.       -++++.-+.--.|.++-
T Consensus        83 ~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~~d-----~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilg  155 (1311)
T KOG1900|consen   83 DMGIFPEIGR--AWITIDNNLFLWNYESDNELAEYD-----GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILG  155 (1311)
T ss_pred             eeccchhhcc--eEEEeCCeEEEEEcCCCCcccccc-----chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEE
Confidence            3455564332  223569999999999865444443     223344444433111       11222223333444443


Q ss_pred             CCCcc--cceE------EeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCe--------ee-------------E
Q 024451          124 TRVAS--RAVR------TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH--------QL-------------Q  174 (267)
Q Consensus       124 ~~~~~--~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~-------------~  174 (267)
                      +....  ....      .+...+..|.++....+|+.|.+| .||  .+|.+....        +.             .
T Consensus       156 V~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP  232 (1311)
T KOG1900|consen  156 VSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP  232 (1311)
T ss_pred             EEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence            22111  0111      111224557888877788877764 455  555543210        00             0


Q ss_pred             EEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451          175 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  216 (267)
Q Consensus       175 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~  216 (267)
                      .+.+.. ..+..+|..+..+...+.+.+-+..|.+..||...
T Consensus       233 s~~~~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  233 SLLSVP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhhcCC-CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            000100 12345788999998889999999999999999755

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=81.34  E-value=26  Score=28.12  Aligned_cols=94  Identities=19%  Similarity=0.229  Sum_probs=52.8

Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE------eCCeEEEEeCCccceeeeccc-ccCCcc
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY------SNGDCYVWDTLLAKVVLNLGS-LQNSHE  231 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~------~dg~i~i~d~~~~~~~~~~~~-~~~~~~  231 (267)
                      -..|++||..+.+-     .....+-.+.|.++.|..+.+.+++|.      ....+..||.....-. .+.. ....-.
T Consensus        15 C~~lC~yd~~~~qW-----~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ip   88 (281)
T PF12768_consen   15 CPGLCLYDTDNSQW-----SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIP   88 (281)
T ss_pred             CCEEEEEECCCCEe-----ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCC
Confidence            34699999876542     222233445799999987777888875      3457888987654321 1111 001234


Q ss_pred             ceEEEEEEC-CC-CCeEEEeE-CCCcEEEE
Q 024451          232 GRITCLGLS-AD-GSALCTGS-WDTNLKIW  258 (267)
Q Consensus       232 ~~v~~~~~~-p~-~~~l~sgs-~dg~i~~w  258 (267)
                      ++|..+.+. .| .++.+.|. .+|...|.
T Consensus        89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~  118 (281)
T PF12768_consen   89 GPVTALTFISNDGSNFWVAGRSANGSTFLM  118 (281)
T ss_pred             CcEEEEEeeccCCceEEEeceecCCCceEE
Confidence            677777763 23 33444443 34443333

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=80.96  E-value=34  Score=29.20  Aligned_cols=29  Identities=21%  Similarity=0.478  Sum_probs=24.8

Q ss_pred             eEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          233 RITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .|..++..+..+.|.+-+.+|.|.+|+++
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~  219 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLG  219 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence            49999999988999999999999999985

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=80.95  E-value=38  Score=29.67  Aligned_cols=61  Identities=18%  Similarity=0.265  Sum_probs=44.7

Q ss_pred             CCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCC
Q 024451          106 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  168 (267)
Q Consensus       106 ~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  168 (267)
                      ...+++.++..|.||+||-- +......+.+-...|-.+....+|+++++.+.. .+.+-|++
T Consensus       572 esGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            34578999999999999953 333334455666778889999999988776653 67777764

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=80.82  E-value=34  Score=29.08  Aligned_cols=110  Identities=16%  Similarity=0.186  Sum_probs=56.9

Q ss_pred             eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee-
Q 024451          142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV-  220 (267)
Q Consensus       142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~-  220 (267)
                      ..+...+++.+++.+..-.-++-||--  +..   ++.........+.++.|.+++..++++ ..|.+..-+ ..++.- 
T Consensus       242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~---W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~-d~G~~~~  314 (398)
T PLN00033        242 STVNRSPDGDYVAVSSRGNFYLTWEPG--QPY---WQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSK-GTGLTEE  314 (398)
T ss_pred             eeEEEcCCCCEEEEECCccEEEecCCC--Ccc---eEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEec-CCCCccc
Confidence            344556677666665544334444432  111   111112223457889999999988877 555554322 222110 


Q ss_pred             -eecccccCC-ccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          221 -LNLGSLQNS-HEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       221 -~~~~~~~~~-~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                       ..+...... -...+..+.|.+++..+++| .+|.+....
T Consensus       315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~  354 (398)
T PLN00033        315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST  354 (398)
T ss_pred             ccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC
Confidence             011111111 12358889999888877765 567766653

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=80.79  E-value=34  Score=29.07  Aligned_cols=115  Identities=11%  Similarity=0.050  Sum_probs=62.7

Q ss_pred             ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeE--EEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451          138 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ--VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  215 (267)
Q Consensus       138 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~  215 (267)
                      ...+..+.+.+++..++++ .+|.+. +....++.-.  .+...........+.++.|.+++..+++| .+|.+.... .
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D  355 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-D  355 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-C
Confidence            3457888998888877654 556644 3333332110  11111111112347888999888877777 566655543 1


Q ss_pred             ccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEE
Q 024451          216 LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW  258 (267)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w  258 (267)
                      .++.-..... ...-...+..+.|.++++.+++| .+|.|.-|
T Consensus       356 ~G~tW~~~~~-~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        356 GGKSWKRDKG-ADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             CCcceeEccc-cCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            2221111100 01224567899998888888865 57776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	267
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-127
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		9e-66
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-65
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-65
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		4e-04
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-65
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		4e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-65
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-53
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-17
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-17
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-17
2h9l_A	329	Wdr5delta23 Length = 329		5e-17
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-17
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-17
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-17
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-17
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-17
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-17
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-17
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-17
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		7e-17
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-16
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-16
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-16
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-16
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		6e-16
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-14
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-11
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-14
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-13
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-13
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-12
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-12
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		8e-11
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-11
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-11
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-11
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		6e-09
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-11
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		5e-11
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		5e-10
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-10
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		5e-10
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		5e-10
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-10
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-09
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		9e-09
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-08
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-08
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		3e-08
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-08
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-08
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		8e-08
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-07
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		3e-07
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-06
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		3e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		3e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		5e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-06
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-06
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		4e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		5e-06
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-06
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		1e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-05
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		4e-05
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		5e-04

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score =  449 bits (1156), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 207/269 (76%), Positives = 241/269 (89%), Gaps = 2/269 (0%)
Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           M CAF+P GQSVACGGLDS CSIFNL+S  D+DGN+PVSR+L+GHKGY S CQYVPD++T
Sbjct: 112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET 171
Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
            LIT SGDQTCVLWD+TTG R S+FG EF SGHTADVLS+SI+  N+ MF+SGSCD+T R
Sbjct: 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ- 179
           LWD R+ SRAVRT+HGHEGD+N+VKFFPDG RFGTGSDDGTCRLFD+RTGHQLQVY ++ 
Sbjct: 232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291
Query: 180 -HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238
              +NE+P VTS+AFSISGRLLFAGYSNGDCYVWDTLLA++VLNLG+LQNSHEGRI+CLG
Sbjct: 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG 351
Query: 239 LSADGSALCTGSWDTNLKIWAFGGYRRVL 267
           LS+DGSALCTGSWD NLKIWAF G+R+++
Sbjct: 352 LSSDGSALCTGSWDKNLKIWAFSGHRKIV 380

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score =  246 bits (628), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 129/258 (50%), Positives = 182/258 (70%), Gaps = 19/258 (7%)
Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D 
Sbjct: 112 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 166
Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
            ++TSSGD TC LWDI TG +T+       +GHT DV+S+S++  ++R+FVSG+CD++A+
Sbjct: 167 QIVTSSGDTTCALWDIETGQQTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAK 220
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWD R      +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R   +L  Y    
Sbjct: 221 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-- 277
Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
            +N I  +TS++FS SGRLL AGY + +C VWD L A    +   +   H+ R++CLG++
Sbjct: 278 -DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVT 332
Query: 241 ADGSALCTGSWDTNLKIW 258
            DG A+ TGSWD+ LKIW
Sbjct: 333 DDGMAVATGSWDSFLKIW 350

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 92  GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
           GH A + ++   G++SR+ VS S D    +WD+   ++ V         V T  + P GN
Sbjct: 64  GHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGN 121
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD--C 209
               G  D  C +++++T  +  V   +       +++   F    +++    S+GD  C
Sbjct: 122 YVACGGLDNICSIYNLKT-REGNVRVSRELAGHTGYLSCCRFLDDNQIV---TSSGDTTC 177
Query: 210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
            +WD    +      +    H G +  L L+ D     +G+ D + K+W
Sbjct: 178 ALWDIETGQQT----TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 222

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 129/258 (50%), Positives = 182/258 (70%), Gaps = 19/258 (7%)
Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D 
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 155
Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
            ++TSSGD TC LWDI TG +T+       +GHT DV+S+S++  ++R+FVSG+CD++A+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAK 209
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWD R      +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R   +L  Y    
Sbjct: 210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-- 266
Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
            +N I  +TS++FS SGRLL AGY + +C VWD L A    +   +   H+ R++CLG++
Sbjct: 267 -DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVT 321
Query: 241 ADGSALCTGSWDTNLKIW 258
            DG A+ TGSWD+ LKIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 92  GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
           GH A + ++   G++SR+ VS S D    +WD+   ++ V         V T  + P GN
Sbjct: 53  GHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGN 110
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD--C 209
               G  D  C +++++T  +  V   +       +++   F    +++    S+GD  C
Sbjct: 111 YVACGGLDNICSIYNLKT-REGNVRVSRELAGHTGYLSCCRFLDDNQIV---TSSGDTTC 166
Query: 210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
            +WD    +      +    H G +  L L+ D     +G+ D + K+W
Sbjct: 167 ALWDIETGQQT----TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 129/258 (50%), Positives = 182/258 (70%), Gaps = 19/258 (7%)
Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D 
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 155
Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
            ++TSSGD TC LWDI TG +T+       +GHT DV+S+S++  ++R+FVSG+CD++A+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAK 209
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWD R      +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R   +L  Y    
Sbjct: 210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-- 266
Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
            +N I  +TS++FS SGRLL AGY + +C VWD L A    +   +   H+ R++CLG++
Sbjct: 267 -DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVT 321
Query: 241 ADGSALCTGSWDTNLKIW 258
            DG A+ TGSWD+ LKIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 92  GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
           GH A + ++   G++SR+ +S S D    +WD+   ++ V         V T  + P GN
Sbjct: 53  GHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGN 110
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD--C 209
               G  D  C +++++T  +  V   +       +++   F    +++    S+GD  C
Sbjct: 111 YVACGGLDNICSIYNLKT-REGNVRVSRELAGHTGYLSCCRFLDDNQIV---TSSGDTTC 166
Query: 210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
            +WD    +      +    H G +  L L+ D     +G+ D + K+W
Sbjct: 167 ALWDIETGQQT----TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 129/258 (50%), Positives = 182/258 (70%), Gaps = 19/258 (7%)
Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D 
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 155
Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
            ++TSSGD TC LWDI TG +T+       +GHT DV+S+S++  ++R+FVSG+CD++A+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAK 209
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWD R      +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R   +L  Y    
Sbjct: 210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-- 266
Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
            +N I  +TS++FS SGRLL AGY + +C VWD L A    +   +   H+ R++CLG++
Sbjct: 267 -DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVT 321
Query: 241 ADGSALCTGSWDTNLKIW 258
            DG A+ TGSWD+ LKIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 92  GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
           GH A + ++   G++SR+ +S S D    +WD+   ++ V         V T  + P GN
Sbjct: 53  GHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGN 110
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD--C 209
               G  D  C +++++T  +  V   +       +++   F    +++    S+GD  C
Sbjct: 111 YVACGGLDNICSIYNLKT-REGNVRVSRELAGHTGYLSCCRFLDDNQIV---TSSGDTTC 166
Query: 210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
            +WD    +      +    H G +  L L+ D     +G+ D + K+W
Sbjct: 167 ALWDIETGQQT----TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 129/258 (50%), Positives = 182/258 (70%), Gaps = 19/258 (7%)
Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           MTCA++P+G  VACGGLD++CSI+NL +   ++GN+ VSR L+GH GY+SCC+++  +D 
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 155
Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
            ++TSSGD TC LWDI TG +T+       +GHT DV+S+S++  ++R+FVSG+CD++A+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAK 209
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           LWD R      +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R   +L  Y    
Sbjct: 210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-- 266
Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
            +N I  +TS++FS SGRLL AGY + +C VWD L A    +   +   H+ R++CLG++
Sbjct: 267 -DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVT 321
Query: 241 ADGSALCTGSWDTNLKIW 258
            DG A+ TGSWD+ LKIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 92  GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
           GH A + ++   G++SR+ VS S D    +WD+   ++ V         V T  + P GN
Sbjct: 53  GHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGN 110
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD--C 209
               G  D  C +++++T  +  V   +       +++   F    +++    S+GD  C
Sbjct: 111 YVACGGLDNICSIYNLKT-REGNVRVSRELAGHTGYLSCCRFLDDNQIV---TSSGDTTC 166
Query: 210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
            +WD    +      +    H G +  L L+ D     +G+ D + K+W
Sbjct: 167 ALWDIETGQQT----TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score =  204 bits (520), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 108/261 (41%), Positives = 163/261 (62%), Gaps = 18/261 (6%)
Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDED 59
           M CA++P+G ++ACGGLD+ CS++ L    DK+ N+   +  ++ H  Y+S C +  + D
Sbjct: 110 MACAYAPSGCAIACGGLDNKCSVYPLT--FDKNENMAAKKKSVAMHTNYLSACSFT-NSD 166
Query: 60  THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS-RMFVSGSCDST 118
             ++T+SGD TC LWD+ +G     F      GH ADVL + ++ S +   FVSG CD  
Sbjct: 167 MQILTASGDGTCALWDVESGQLLQSF-----HGHGADVLCLDLAPSETGNTFVSGGCDKK 221
Query: 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 178
           A +WD R + + V+ F  HE DVN+V+++P G+ F +GSDD TCRL+D+R   ++ +Y +
Sbjct: 222 AMVWDMR-SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK 280
Query: 179 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238
              E+ I   +S+ FS+SGRLLFAGY++    VWD L    V    S+   HE R++ L 
Sbjct: 281 ---ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV----SILFGHENRVSTLR 333
Query: 239 LSADGSALCTGSWDTNLKIWA 259
           +S DG+A C+GSWD  L++WA
Sbjct: 334 VSPDGTAFCSGSWDHTLRVWA 354

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29  PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
           PT    N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+
Sbjct: 12  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 62
Query: 89  FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
           F+   SGH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    
Sbjct: 63  FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 120
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
           F P  N   +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 175
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           +G C +WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 176 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 115/262 (43%), Gaps = 33/262 (12%)
Query: 3   CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
            AFSP GQ++A    D    ++N N      G L   + L+GH   V    + PD  T +
Sbjct: 145 VAFSPDGQTIASASDDKTVKLWNRN------GQLL--QTLTGHSSSVWGVAFSPDGQT-I 195
Query: 63  ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 122
            ++S D+T  LW+    L  ++      +GH++ V  V+ S  + +   S S D T +LW
Sbjct: 196 ASASDDKTVKLWNRNGQLLQTL------TGHSSSVRGVAFS-PDGQTIASASDDKTVKLW 248
Query: 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 182
           +     + ++T  GH   VN V F PDG    + SDD T +L++ R G  LQ        
Sbjct: 249 NRN--GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 305
Query: 183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCLGLS 240
                V  +AFS  G+ + +   +    +W+        N   LQ    H   +  +  S
Sbjct: 306 -----VWGVAFSPDGQTIASASDDKTVKLWNR-------NGQHLQTLTGHSSSVWGVAFS 353
Query: 241 ADGSALCTGSWDTNLKIWAFGG 262
            DG  + + S D  +K+W   G
Sbjct: 354 PDGQTIASASDDKTVKLWNRNG 375

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29  PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
           PT    N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+
Sbjct: 12  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 62
Query: 89  FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
           F+   SGH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    
Sbjct: 63  FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 120
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
           F P  N   +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 175
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           +G C +WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 176 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29  PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
           PT    N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+
Sbjct: 23  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 73
Query: 89  FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
           F+   SGH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    
Sbjct: 74  FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 131
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
           F P  N   +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   
Sbjct: 132 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 186
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           +G C +WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 187 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 238

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29  PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
           PT    N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+
Sbjct: 11  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 61
Query: 89  FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
           F+   SGH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    
Sbjct: 62  FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 119
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
           F P  N   +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   
Sbjct: 120 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 174
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           +G C +WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 175 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 226

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29  PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
           PT    N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+
Sbjct: 30  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 80
Query: 89  FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
           F+   SGH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    
Sbjct: 81  FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 138
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
           F P  N   +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   
Sbjct: 139 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 193
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           +G C +WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 194 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29  PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
           PT    N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+
Sbjct: 28  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 78
Query: 89  FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
           F+   SGH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    
Sbjct: 79  FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 136
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
           F P  N   +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 191
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           +G C +WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 192 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29  PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
           PT    N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+
Sbjct: 2   PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 52
Query: 89  FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
           F+   SGH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    
Sbjct: 53  FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 110
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
           F P  N   +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   
Sbjct: 111 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 165
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           +G C +WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 166 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 217

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29  PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
           PT    N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+
Sbjct: 7   PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 57
Query: 89  FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
           F+   SGH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    
Sbjct: 58  FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 115
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
           F P  N   +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   
Sbjct: 116 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 170
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           +G C +WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 171 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 222

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29  PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
           PT    N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+
Sbjct: 12  PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 62
Query: 89  FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
           F+   SGH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    
Sbjct: 63  FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 120
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
           F P  N   +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 175
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           +G C +WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 176 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29  PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
           PT    N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+
Sbjct: 6   PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 56
Query: 89  FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
           F+   SGH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    
Sbjct: 57  FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 114
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
           F P  N   +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 169
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           +G C +WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 170 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29  PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
           PT    N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+
Sbjct: 6   PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 56
Query: 89  FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
           F+   SGH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    
Sbjct: 57  FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 114
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
           F P  N   +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 169
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           +G C +WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 170 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 22/235 (9%)
Query: 29  PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
           PT    N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+
Sbjct: 9   PTPVKPNYALMFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 59
Query: 89  FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
           F+   SGH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    
Sbjct: 60  FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 117
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
           F P  N   +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 172
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           +G C +WDT   +    L +L +     ++ +  S +G  +   + D +LK+W +
Sbjct: 173 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDY 224

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29  PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
           PT    N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+
Sbjct: 9   PTPVKPNYALMFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 59
Query: 89  FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
           F+   SGH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    
Sbjct: 60  FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 117
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
           F P  N   +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 172
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           +G C +WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 173 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 22/229 (9%)
Query: 35  NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ---S 91
           N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+F+   S
Sbjct: 11  NYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGKFEKTIS 61
Query: 92  GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
           GH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    F P  N
Sbjct: 62  GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211
              +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   +G C +
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRI 174
Query: 212 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 175 WDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 220

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 22/229 (9%)
Query: 35  NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ---S 91
           N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+F+   S
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGKFEKTIS 65
Query: 92  GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
           GH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    F P  N
Sbjct: 66  GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211
              +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   +G C +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 212 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 179 WDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 22/229 (9%)
Query: 35  NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ---S 91
           N  +   L+GH   VS  ++ P+ +  L +SS D+   +W          + G+F+   S
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGKFEKTIS 65
Query: 92  GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
           GH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    F P  N
Sbjct: 66  GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211
              +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   +G C +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 212 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 179 WDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 109/229 (47%), Gaps = 22/229 (9%)
Query: 35  NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ---S 91
           N  +   L+GH   VS  ++ P+ +  L  SS D+   +W          + G+F+   S
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGE-WLAASSADKLIKIW--------GAYDGKFEKTIS 65
Query: 92  GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
           GH   +  V+ S S+S + VS S D T ++WD   + + ++T  GH   V    F P  N
Sbjct: 66  GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211
              +GS D + R++D++TG  L+     H +     V+++ F+  G L+ +   +G C +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 212 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           WDT   +    L +L +     ++ +  S +G  +   + D  LK+W +
Sbjct: 179 WDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 18/215 (8%)
Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           ++ AFSP  + +  GG D+   ++N+       G    +     H  +VSC ++ P  D 
Sbjct: 113 LSVAFSPDNRQIVSGGRDNALRVWNVK------GECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 61  HLITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 119
            +I S G D    +WD+ TG   +        GHT  V SV++S   S +  S   D  A
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDL-----KGHTNYVTSVTVSPDGS-LCASSDKDGVA 220
Query: 120 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 179
           RLWD            G    +N + F P+       ++ G  R+FD+     +     +
Sbjct: 221 RLWDLTKGEALSEMAAG--APINQICFSPNRYWMCAATEKGI-RIFDLENKDIIVELAPE 277
Query: 180 H--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 212
           H   +  +P   SIA+S  G  L++GY++    VW
Sbjct: 278 HQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 18/226 (7%)
Query: 41  MLSGHKGYVS--CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV----FGGEFQSGHT 94
            L+GH+G+V+   C   P+  T ++++S D+T + W       +S            GH+
Sbjct: 8   QLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 95  ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 154
           A V  V++S +N    VS S D + RLW+ +   +    F GH  DV +V F PD  +  
Sbjct: 68  AFVSDVALS-NNGNFAVSASWDHSLRLWNLQ-NGQCQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS--GRLLFAGYSNGDCYVW 212
           +G  D   R+++++      +    H +     V+ + FS S    ++ +G  +    VW
Sbjct: 126 SGGRDNALRVWNVKGECMHTLSRGAHTD----WVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 213 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
           D    ++V +L      H   +T + +S DGS   +   D   ++W
Sbjct: 182 DLATGRLVTDL----KGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 118/278 (42%), Gaps = 43/278 (15%)
Query: 5   FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 64
           FSP G+ +A G  D +  I+++        N  +  +L GH+  +    Y P  D  L++
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIE-------NRKIVMILQGHEQDIYSLDYFPSGD-KLVS 182
Query: 65  SSGDQTCVLWDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121
            SGD+T  +WD+ TG   L  S+  G         V +V++S  + +   +GS D   R+
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDG---------VTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 122 WDTRVASRAVR------TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL-- 173
           WD+       R      +  GH+  V +V F  DG    +GS D + +L++++  +    
Sbjct: 234 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 293
Query: 174 ---------QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG 224
                    +V Y  H +     V S+A + +   + +G  +     WD      +L L 
Sbjct: 294 SKTPNSGTCEVTYIGHKD----FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349
Query: 225 SLQNSHEGRITCLG--LSADGSALCTGSWDTNLKIWAF 260
             +NS        G  L  + +   TGS D   +IW +
Sbjct: 350 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 112/269 (41%), Gaps = 65/269 (24%)
Query: 40  RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
           R L GH  +VS    +  +    ++ S D T  LWD+TTG  T  F      GHT DVLS
Sbjct: 80  RALRGHSHFVSDV-VISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-----VGHTKDVLS 133
Query: 100 VSISGSNSRMFVSGSCDSTARLWDT----------------------------------- 124
           V+ S S++R  VSGS D T +LW+T                                   
Sbjct: 134 VAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192
Query: 125 --------RVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 175
                    +A+  ++T H GH G +NTV   PDG+   +G  DG   L+D+  G  L  
Sbjct: 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-- 250
Query: 176 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN------LGSLQNS 229
            Y   G + I    ++ FS   R      +     +WD L  K++++      + +   +
Sbjct: 251 -YTLDGGDII---NALCFS-PNRYWLCAATGPSIKIWD-LEGKIIVDELKQEVISTSSKA 304
Query: 230 HEGRITCLGLSADGSALCTGSWDTNLKIW 258
              + T L  SADG  L  G  D  +++W
Sbjct: 305 EPPQCTSLAWSADGQTLFAGYTDNLVRVW 333

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 112/269 (41%), Gaps = 65/269 (24%)
Query: 40  RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
           R L GH  +VS    +  +    ++ S D T  LWD+TTG  T  F      GHT DVLS
Sbjct: 57  RALRGHSHFVSDV-VISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-----VGHTKDVLS 110
Query: 100 VSISGSNSRMFVSGSCDSTARLWDT----------------------------------- 124
           V+ S S++R  VSGS D T +LW+T                                   
Sbjct: 111 VAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 169
Query: 125 --------RVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 175
                    +A+  ++T H GH G +NTV   PDG+   +G  DG   L+D+  G  L  
Sbjct: 170 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-- 227
Query: 176 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN------LGSLQNS 229
            Y   G + I    ++ FS   R      +     +WD L  K++++      + +   +
Sbjct: 228 -YTLDGGDII---NALCFS-PNRYWLCAATGPSIKIWD-LEGKIIVDELKQEVISTSSKA 281
Query: 230 HEGRITCLGLSADGSALCTGSWDTNLKIW 258
              + T L  SADG  L  G  D  +++W
Sbjct: 282 EPPQCTSLAWSADGQTLFAGYTDNLVRVW 310

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 34/231 (14%)
Query: 32  KDGNLPVSRMLSGHKGYV-SCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGE 88
           + G L   ++L GH  +V +C Q+  +    +++ S D T  +W   TG  LRT V    
Sbjct: 104 RRGELKSPKVLKGHDDHVITCLQFCGNR---IVSGSDDNTLKVWSAVTGKCLRTLV---- 156
Query: 89  FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 148
              GHT  V S   S     + +SGS D T ++W+       + T +GH   V  +    
Sbjct: 157 ---GHTGGVWS---SQMRDNIIISGSTDRTLKVWNAETGE-CIHTLYGHTSTVRCMHLHE 209
Query: 149 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI-AFSISGRLLFAGYSNG 207
              R  +GS D T R++DI TG  L V         + HV ++      GR + +G  + 
Sbjct: 210 --KRVVSGSRDATLRVWDIETGQCLHVL--------MGHVAAVRCVQYDGRRVVSGAYDF 259
Query: 208 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
              VWD    +    L +LQ  H  R+    L  DG  + +GS DT++++W
Sbjct: 260 MVKVWD---PETETCLHTLQ-GHTNRV--YSLQFDGIHVVSGSLDTSIRVW 304

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 19/159 (11%)
Query: 9   GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 68
           G  V C   D   +++++ SPTD    + + R+L GH+  V+   +   +D +++++SGD
Sbjct: 224 GMMVTCSK-DRSIAVWDMASPTD----ITLRRVLVGHRAAVNVVDF---DDKYIVSASGD 275
Query: 69  QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 128
           +T  +W+ +T         EF          ++      R+ VSGS D+T RLWD    +
Sbjct: 276 RTIKVWNTSTC--------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA 327
Query: 129 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167
             +R   GHE  V  ++F  D  R  +G+ DG  +++D+
Sbjct: 328 -CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 119/295 (40%), Gaps = 70/295 (23%)
Query: 10  QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 69
           Q +  G  D+   I++ N+       L   R+L+GH G V C QY   ++  +IT S D 
Sbjct: 144 QKIVSGLRDNTIKIWDKNT-------LECKRILTGHTGSVLCLQY---DERVIITGSSDS 193
Query: 70  TCVLWDITTG---------------LR-----------------------TSVFGGEFQS 91
           T  +WD+ TG               LR                       T +       
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 253
Query: 92  GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
           GH A   +V++   + +  VS S D T ++W+T      VRT +GH+  +  +++     
Sbjct: 254 GHRA---AVNVVDFDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQY--RDR 307
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211
              +GS D T RL+DI  G  L+V     G  E+  V  I F    + + +G  +G   V
Sbjct: 308 LVVSGSSDNTIRLWDIECGACLRVL---EGHEEL--VRCIRF--DNKRIVSGAYDGKIKV 360
Query: 212 WDTLLA------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
           WD + A         L L +L   H GR+    L  D   + + S D  + IW F
Sbjct: 361 WDLVAALDPRAPAGTLCLRTLV-EHSGRV--FRLQFDEFQIVSSSHDDTILIWDF 412

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 103/275 (37%), Gaps = 43/275 (15%)
Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           + CAFS     +A    D    I++  S T K     +      H   V+CC +  ++  
Sbjct: 661 LCCAFSSDDSYIATCSADKKVKIWD--SATGK-----LVHTYDEHSEQVNCCHFT-NKSN 712
Query: 61  HLITSSG--DQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 117
           HL+ ++G  D    LWD+     R ++FG      HT  V     S  +  +  S S D 
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFG------HTNSVNHCRFS-PDDELLASCSADG 765
Query: 118 TARLWDTRVASR-----AVRTFHGHEGDVNTVKFF-------PDGNRFGTGSDDGTCRLF 165
           T RLWD R A+        R F   E     V+          DG++    + +    LF
Sbjct: 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LF 824
Query: 166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW--DTLLAKVVLNL 223
           DI T   L   +  H       +    FS    L     S     +W  D+ L KV    
Sbjct: 825 DIHTSGLLAEIHTGHHST----IQYCDFSPYDHLAVIALSQYCVELWNIDSRL-KVADCR 879
Query: 224 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
           G L   H      +  S DGS+  T S D  +++W
Sbjct: 880 GHLSWVHG-----VMFSPDGSSFLTASDDQTIRVW 909

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 103/275 (37%), Gaps = 43/275 (15%)
Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           + CAFS     +A    D    I++  S T K     +      H   V+CC +  ++  
Sbjct: 668 LCCAFSSDDSYIATCSADKKVKIWD--SATGK-----LVHTYDEHSEQVNCCHFT-NKSN 719
Query: 61  HLITSSG--DQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 117
           HL+ ++G  D    LWD+     R ++FG      HT  V     S  +  +  S S D 
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFG------HTNSVNHCRFS-PDDELLASCSADG 772
Query: 118 TARLWDTRVASR-----AVRTFHGHEGDVNTVKFF-------PDGNRFGTGSDDGTCRLF 165
           T RLWD R A+        R F   E     V+          DG++    + +    LF
Sbjct: 773 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LF 831
Query: 166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW--DTLLAKVVLNL 223
           DI T   L   +  H       +    FS    L     S     +W  D+ L KV    
Sbjct: 832 DIHTSGLLAEIHTGHHST----IQYCDFSPYDHLAVIALSQYCVELWNIDSRL-KVADCR 886
Query: 224 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
           G L   H      +  S DGS+  T S D  +++W
Sbjct: 887 GHLSWVHG-----VMFSPDGSSFLTASDDQTIRVW 916

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 29  PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
           P +     P    LSGH+  V+   + P     ++++S D T  +WD  TG        +
Sbjct: 91  PKEWIPRPPEKYALSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETG--------D 141
Query: 89  FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
           F+    GHT  V  +S   S  ++  S S D T +LWD +     +RT HGH+ +V++V 
Sbjct: 142 FERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVS 199
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 176
             P+G+   + S D T ++++++TG+ ++ +
Sbjct: 200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 95/240 (39%), Gaps = 39/240 (16%)
Query: 40  RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
           R + GH   VS    +P+ D H++++S D+T  +W++ TG     F     +GH   V  
Sbjct: 186 RTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTF-----TGHREWVRM 239
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPD--------- 149
           V     +  +  S S D T R+W   VA++  +     H   V  + + P+         
Sbjct: 240 VR-PNQDGTLIASCSNDQTVRVW--VVATKECKAELREHRHVVECISWAPESSYSSISEA 296
Query: 150 -----------GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR 198
                      G    +GS D T +++D+ TG  L              V  + F   G+
Sbjct: 297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-----WVRGVLFHSGGK 351
Query: 199 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
            + +   +    VWD    + +  L    N+HE  +T L        + TGS D  +K+W
Sbjct: 352 FILSCADDKTLRVWDYKNKRCMKTL----NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 21/232 (9%)
Query: 41  MLSGHKGYVSCC-----QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GH 93
           +L GH  +V+       Q   ++   LI+ S D+T ++W +    +   FG   ++  GH
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 94  TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 153
              V  +++S  N    +S S D T RLWD R  +   R F GH+ +V +V F PD  + 
Sbjct: 76  NHFVSDLALSQENC-FAISSSWDKTLRLWDLRTGTTYKR-FVGHQSEVYSVAFSPDNRQI 133
Query: 154 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV--TSIAFSISGRLLFAGYS-----N 206
            +   +   +L++I    +     +++  + +  V  + I  S +    FA Y      +
Sbjct: 134 LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193
Query: 207 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
           G   VW+T        +     +HE  +  L +S +G  + TG  D  L IW
Sbjct: 194 GRLKVWNT-----NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 108/285 (37%), Gaps = 75/285 (26%)
Query: 40  RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
           R L+GH  +V       D    L + S D    LWD+  G+ T  F      GHT DVLS
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFAL-SGSWDGELRLWDLAAGVSTRRF-----VGHTKDVLS 477
Query: 100 VSISGSNSRMFVSGSCDSTARLWDT----------------------RVASRAVR----- 132
           V+ S  N R  VS S D T +LW+T                      R +   ++     
Sbjct: 478 VAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS 536
Query: 133 -------------------TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 173
                              T  GH G V+TV   PDG+   +G  DG   L+D+  G +L
Sbjct: 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596
Query: 174 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR 233
              Y     N + H  ++ FS +   L A   +G   +WD     +V +L     +   +
Sbjct: 597 ---YSLEA-NSVIH--ALCFSPNRYWLCAATEHG-IKIWDLESKSIVEDLKVDLKAEAEK 649
Query: 234 I---------------TCLGLSADGSALCTGSWDTNLKIWAFGGY 263
                           T L  SADGS L +G  D  +++W  G Y
Sbjct: 650 ADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 694

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 103/277 (37%), Gaps = 63/277 (22%)
Query: 31  DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 90
           D+   +PV R   GH   V  C    D   + +++S D+T  LWD+ TG     F     
Sbjct: 45  DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRF----- 97
Query: 91  SGHTADVLSVSISGSNSRMFVSGSCDSTARLW---------------------------- 122
            GH +DV+SV I    S M +SGS D T ++W                            
Sbjct: 98  VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 123 ------------DTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164
                       D  V +  +  F       GH  ++NT+   PDG    +   DG   L
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 216
Query: 165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDT--LLAKVVL 221
           +++     +   Y    ++E   V S+AFS +   L A  + G   +  D   L+  +  
Sbjct: 217 WNLAAKKAM---YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP 270
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
                  + E     L  SADG  L  G  D  +++W
Sbjct: 271 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 103/277 (37%), Gaps = 63/277 (22%)
Query: 31  DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 90
           D+   +PV R   GH   V  C    D   + +++S D+T  LWD+ TG     F     
Sbjct: 51  DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRF----- 103
Query: 91  SGHTADVLSVSISGSNSRMFVSGSCDSTARLW---------------------------- 122
            GH +DV+SV I    S M +SGS D T ++W                            
Sbjct: 104 VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 123 ------------DTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164
                       D  V +  +  F       GH  ++NT+   PDG    +   DG   L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDT--LLAKVVL 221
           +++     +   Y    ++E   V S+AFS +   L A  + G   +  D   L+  +  
Sbjct: 223 WNLAAKKAM---YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
                  + E     L  SADG  L  G  D  +++W
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 103/277 (37%), Gaps = 63/277 (22%)
Query: 31  DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 90
           D+   +PV R   GH   V  C    D   + +++S D+T  LWD+ TG     F     
Sbjct: 51  DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRF----- 103
Query: 91  SGHTADVLSVSISGSNSRMFVSGSCDSTARLW---------------------------- 122
            GH +DV+SV I    S M +SGS D T ++W                            
Sbjct: 104 VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 123 ------------DTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164
                       D  V +  +  F       GH  ++NT+   PDG    +   DG   L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDT--LLAKVVL 221
           +++     +   Y    ++E   V S+AFS +   L A  + G   +  D   L+  +  
Sbjct: 223 WNLAAKKAM---YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
                  + E     L  SADG  L  G  D  +++W
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 103/277 (37%), Gaps = 63/277 (22%)
Query: 31  DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 90
           D+   +PV R   GH   V  C    D   + +++S D+T  LWD+ TG     F     
Sbjct: 51  DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRF----- 103
Query: 91  SGHTADVLSVSISGSNSRMFVSGSCDSTARLW---------------------------- 122
            GH +DV+SV I    S M +SGS D T ++W                            
Sbjct: 104 VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 123 ------------DTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164
                       D  V +  +  F       GH  ++NT+   PDG    +   DG   L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDT--LLAKVVL 221
           +++     +   Y    ++E   V S+AFS +   L A  + G   +  D   L+  +  
Sbjct: 223 WNLAAKKAM---YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
                  + E     L  SADG  L  G  D  +++W
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 103/277 (37%), Gaps = 63/277 (22%)
Query: 31  DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 90
           D+   +PV R   GH   V  C    D   + +++S D+T  LWD+ TG     F     
Sbjct: 51  DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRF----- 103
Query: 91  SGHTADVLSVSISGSNSRMFVSGSCDSTARLW---------------------------- 122
            GH +DV+SV I    S M +SGS D T ++W                            
Sbjct: 104 VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 123 ------------DTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164
                       D  V +  +  F       GH  ++NT+   PDG    +   DG   L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDT--LLAKVVL 221
           +++     +   Y    ++E   V S+AFS +   L A  + G   +  D   L+  +  
Sbjct: 223 WNLAAKKAM---YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
                  + E     L  SADG  L  G  D  +++W
Sbjct: 277 EFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 102/277 (36%), Gaps = 63/277 (22%)
Query: 31  DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 90
           D+   +PV R   GH   V  C    D   + +++S D+T  LWD+ TG     F     
Sbjct: 51  DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRF----- 103
Query: 91  SGHTADVLSVSISGSNSRMFVSGSCDSTARLW---------------------------- 122
            GH +DV SV I    S + +SGS D T ++W                            
Sbjct: 104 VGHKSDVXSVDIDKKASXI-ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 123 ------------DTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164
                       D  V +  +  F       GH  ++NT+   PDG    +   DG   L
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXL 222
Query: 165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDT--LLAKVVL 221
           +++      +  Y    ++E   V S+AFS +   L A  + G   +  D   L+  +  
Sbjct: 223 WNLAAK---KAXYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
                  + E     L  SADG  L  G  D  +++W
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 28  SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS--VF 85
           S  D  G       L GH+       + P+   HL+++S D T  LWDI+   +    V 
Sbjct: 159 SKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVD 218
Query: 86  GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV--ASRAVRTFHGHEGDVNT 143
                +GHTA V  VS    +  +F S + D    +WDTR    S+   +   H  +VN 
Sbjct: 219 AKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNC 278
Query: 144 VKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI------PHVTSIAFS 194
           + F P       TGS D T  L+D+R   +L+++  +  ++EI      PH  +I  S
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETILAS 335

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 12/184 (6%)
Query: 42  LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLS 99
           L GH+       + P+ + +L+++S D T  LWDI  T      +      +GHTA V  
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGN-RFGTG 156
           V+    +  +F S + D    +WDTR    S+   T   H  +VN + F P       TG
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTL 215
           S D T  L+D+R   +L+++  +  ++EI     + +S     + A   ++   +VWD  
Sbjct: 299 SADKTVALWDLRNL-KLKLHSFESHKDEI---FQVQWSPHNETILASSGTDRRLHVWD-- 352
Query: 216 LAKV 219
           L+K+
Sbjct: 353 LSKI 356

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 12/184 (6%)
Query: 42  LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLS 99
           L GH+       + P+ + +L+++S D T  LWDI  T      +      +GHTA V  
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGN-RFGTG 156
           V+    +  +F S + D    +WDTR    S+   T   H  +VN + F P       TG
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTL 215
           S D T  L+D+R   +L+++  +  ++EI     + +S     + A   ++   +VWD  
Sbjct: 301 SADKTVALWDLRNL-KLKLHSFESHKDEI---FQVQWSPHNETILASSGTDRRLHVWD-- 354
Query: 216 LAKV 219
           L+K+
Sbjct: 355 LSKI 358

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 12/184 (6%)
Query: 42  LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLS 99
           L GH+       + P+ + +L+++S D T  LWDI  T      +      +GHTA V  
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGN-RFGTG 156
           V+    +  +F S + D    +WDTR    S+   T   H  +VN + F P       TG
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTL 215
           S D T  L+D+R   +L+++  +  ++EI     + +S     + A   ++   +VWD  
Sbjct: 297 SADKTVALWDLRNL-KLKLHSFESHKDEI---FQVQWSPHNETILASSGTDRRLHVWD-- 350
Query: 216 LAKV 219
           L+K+
Sbjct: 351 LSKI 354

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 61  HLITSSGDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 118
           HL+++S D T  LWDI  G +    V      +GH+A V  V+    +  +F S + D  
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 119 ARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQV 175
             +WDTR    S+       H  +VN + F P       TGS D T  L+D+R   +L++
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL-KLKL 312
Query: 176 YYQQHGENEI------PHVTSIAFS 194
           +  +  ++EI      PH  +I  S
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILAS 337

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 61  HLITSSGDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 118
           HL+++S D T  LWDI  G +    V      +GH+A V  V+    +  +F S + D  
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 119 ARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRT------ 169
             +WDTR    S+       H  +VN + F P       TGS D T  L+D+R       
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 170 ---GHQ---LQVYYQQHGE 182
               H+    QV++  H E
Sbjct: 314 TFESHKDEIFQVHWSPHNE 332

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 11/168 (6%)
Query: 91  SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 150
            GH   V+SV IS +   +  S S D+  RLWD     + +++      D  T+ F PD 
Sbjct: 77  EGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDLE-NGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 151 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY 210
               TG+  G   +F + +G +     +   +     + SIA+S  G+ L +G  +G   
Sbjct: 135 QYLATGTHVGKVNIFGVESGKK-----EYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 211 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
           ++D    K++  L      H   I  L  S D   L T S D  +KI+
Sbjct: 190 IFDIATGKLLHTL----EGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 95/240 (39%), Gaps = 25/240 (10%)
Query: 3   CAFSPTGQSVAC---GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED 59
           CA +P   ++ C   GG      +  L      D N+P   ++ GH   V    + P  D
Sbjct: 40  CAVNPKFMALICEASGG--GAFLVLPLGKTGRVDKNVP---LVCGHTAPVLDIAWCPHND 94
Query: 60  THLITSSGDQTCVLWDITTG-----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 114
             + + S D T ++W+I  G     LR  V   E   GHT  V  V+   +   + +S  
Sbjct: 95  NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE---GHTKRVGIVAWHPTAQNVLLSAG 151
Query: 115 CDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 172
           CD+   +WD    + AV T     H   + +V +  DG    T   D   R+ + R G  
Sbjct: 152 CDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-- 208
Query: 173 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNS 229
             V  ++   +E        F   G++L  G+   S     +WDT   +  L+L  L  S
Sbjct: 209 -TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS 267

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/257 (19%), Positives = 94/257 (36%), Gaps = 25/257 (9%)
Query: 2   TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
           +C   P G ++  GG  S  SI++L +PT +     +   L+            PD    
Sbjct: 102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-----IKAELTSSAPACYALAISPDSKV- 155
Query: 62  LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121
             +   D    +WD    L       +FQ GHT     + IS   ++++ +G  D+T R 
Sbjct: 156 CFSCCSDGNIAVWD----LHNQTLVRQFQ-GHTDGASCIDISNDGTKLW-TGGLDNTVRS 209
Query: 122 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 181
           WD R   +  +  H     + ++ + P G     G +     +  +    + Q++  +  
Sbjct: 210 WDLREGRQLQQ--HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC 267
Query: 182 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241
                 V S+ F+  G+   +   +     W T     +      Q+     +    +S 
Sbjct: 268 ------VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-----FQSKESSSVLSCDISV 316
Query: 242 DGSALCTGSWDTNLKIW 258
           D   + TGS D    ++
Sbjct: 317 DDKYIVTGSGDKKATVY 333

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 10/163 (6%)
Query: 4   AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 63
           A+SP G  +A    D+   I+  N       +      L GH+  V    + P  +  L 
Sbjct: 68  AWSPCGNYLASASFDATTCIWKKNQ-----DDFECVTTLEGHENEVKSVAWAPSGNL-LA 121
Query: 64  TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 123
           T S D++  +W++              + HT DV  V +   +  +  S S D T +L+ 
Sbjct: 122 TCSRDKSVWVWEVDEEDEYECVS--VLNSHTQDVKHV-VWHPSQELLASASYDDTVKLYR 178
Query: 124 TRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 165
                     T  GHE  V ++ F P G R  + SDD T R++
Sbjct: 179 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 89/217 (41%), Gaps = 21/217 (9%)
Query: 12  VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 71
           +  G  D    +FN N+     G   V      H  Y+      P +  ++++ S D T 
Sbjct: 70  IIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDDLTV 121
Query: 72  VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 131
            LW+             F+ GH   V+ V+ +  +   F SG  D T ++W    ++   
Sbjct: 122 KLWNWENNW---ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 132 RTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 189
               G E  VN V ++  PD     T SDD T +++D +T   +        E  + +V+
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMSNVS 232
Query: 190 SIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 224
              F  +  ++ +G  +G   +W++   KV   LN+G
Sbjct: 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 16/147 (10%)
Query: 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 178
             LW+       VR+    E  V   KF    N    GSDD   R+F+  TG ++ V ++
Sbjct: 37  VELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-VDFE 94
Query: 179 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR---IT 235
            H +    ++ SIA   +   + +G  +    +W+        N  +L+ + EG    + 
Sbjct: 95  AHPD----YIRSIAVHPTKPYVLSGSDDLTVKLWNW------ENNWALEQTFEGHEHFVM 144
Query: 236 CLGLSA-DGSALCTGSWDTNLKIWAFG 261
           C+  +  D S   +G  D  +K+W+ G
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWSLG 171

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 89/217 (41%), Gaps = 21/217 (9%)
Query: 12  VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 71
           +  G  D    +FN N+     G   V      H  Y+      P +  ++++ S D T 
Sbjct: 70  IIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDDLTV 121
Query: 72  VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 131
            LW+             F+ GH   V+ V+ +  +   F SG  D T ++W    ++   
Sbjct: 122 KLWNWENNW---ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 132 RTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 189
               G E  VN V ++  PD     T SDD T +++D +T   +        E  + +V+
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMSNVS 232
Query: 190 SIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 224
              F  +  ++ +G  +G   +W++   KV   LN+G
Sbjct: 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 16/147 (10%)
Query: 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 178
             LW+       VR+    E  V   KF    N    GSDD   R+F+  TG ++ V ++
Sbjct: 37  VELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-VDFE 94
Query: 179 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR---IT 235
            H +    ++ SIA   +   + +G  +    +W+        N  +L+ + EG    + 
Sbjct: 95  AHPD----YIRSIAVHPTKPYVLSGSDDLTVKLWNW------ENNWALEQTFEGHEHFVM 144
Query: 236 CLGLSA-DGSALCTGSWDTNLKIWAFG 261
           C+  +  D S   +G  D  +K+W+ G
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWSLG 171

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 88/217 (40%), Gaps = 21/217 (9%)
Query: 12  VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 71
           +  G  D    +FN N+     G   V      H  Y+      P +  ++++ S D T 
Sbjct: 70  IIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDDLTV 121
Query: 72  VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 131
            LW+            +   GH   V+ V+ +  +   F SG  D T ++W    ++   
Sbjct: 122 KLWNWENNWALE----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 132 RTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 189
               G E  VN V ++  PD     T SDD T +++D +T   +        E  + +V+
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMSNVS 232
Query: 190 SIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 224
              F  +  ++ +G  +G   +W++   KV   LN+G
Sbjct: 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 16/147 (10%)
Query: 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 178
             LW+       VR+    E  V   KF    N    GSDD   R+F+  TG ++ V ++
Sbjct: 37  VELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-VDFE 94
Query: 179 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR---IT 235
            H +    ++ SIA   +   + +G  +    +W+        N  +L+ + EG    + 
Sbjct: 95  AHPD----YIRSIAVHPTKPYVLSGSDDLTVKLWNW------ENNWALEQTFEGHEHFVM 144
Query: 236 CLGLSA-DGSALCTGSWDTNLKIWAFG 261
           C+  +  D S   +G  D  +K+W+ G
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWSLG 171

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 81/217 (37%), Gaps = 37/217 (17%)
Query: 42  LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 101
           LSGH G V   +Y       L++ S D+T  +WDI  G  T VF G   +    D+    
Sbjct: 158 LSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI---- 211
Query: 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161
           +   N +  V+GS D+T  +W  ++   +    HG E D   V   P+ N +  G   G 
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVW--KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269
Query: 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 221
                  +GH                         G ++ +G  +    VWD    K + 
Sbjct: 270 MASVRTVSGH-------------------------GNIVVSGSYDNTLIVWDVAQMKCLY 304
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
            L    + H  RI       +     + S DT ++IW
Sbjct: 305 IL----SGHTDRIYSTIYDHERKRCISASMDTTIRIW 337

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 60/257 (23%)
Query: 48  YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 107
           Y+S   ++  E  +L   +      LWD+    R         + H+A V S+S    NS
Sbjct: 160 YISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNM-----TSHSARVGSLSW---NS 210
Query: 108 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167
            +  SGS        D RVA   V T  GH  +V  +++ PDG    +G +D    ++  
Sbjct: 211 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 270
Query: 168 RTGH----QLQVYYQQHGENEI-------------------------------------- 185
             G      LQ + Q  G  +                                       
Sbjct: 271 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 330
Query: 186 -PHVTSIAFSISGRLLFA--GYSNGDCYVWD-TLLAKVVLNLGSLQNSHEGRITCLGLSA 241
              V SI +S   + L +  G++     +W    +AKV    G     H  R+  L +S 
Sbjct: 331 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----HTSRVLSLTMSP 385
Query: 242 DGSALCTGSWDTNLKIW 258
           DG+ + + + D  L++W
Sbjct: 386 DGATVASAAADETLRLW 402

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 60/257 (23%)
Query: 48  YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 107
           Y+S   ++  E  +L   +      LWD+    R         + H+A V S+S    NS
Sbjct: 149 YISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNM-----TSHSARVGSLSW---NS 199
Query: 108 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167
            +  SGS        D RVA   V T  GH  +V  +++ PDG    +G +D    ++  
Sbjct: 200 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259
Query: 168 RTGH----QLQVYYQQHGENEI-------------------------------------- 185
             G      LQ + Q  G  +                                       
Sbjct: 260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 319
Query: 186 -PHVTSIAFSISGRLLFA--GYSNGDCYVWD-TLLAKVVLNLGSLQNSHEGRITCLGLSA 241
              V SI +S   + L +  G++     +W    +AKV    G     H  R+  L +S 
Sbjct: 320 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----HTSRVLSLTMSP 374
Query: 242 DGSALCTGSWDTNLKIW 258
           DG+ + + + D  L++W
Sbjct: 375 DGATVASAAADETLRLW 391

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 14/187 (7%)
Query: 42  LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 101
              H  Y+      P +  ++++ S D T  LW+            +   GH   V+ V+
Sbjct: 93  FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALE----QTFEGHEHFVMCVA 147
Query: 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDD 159
            +  +   F SG  D T ++W    ++       G E  VN V ++  PD     T SDD
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 219
            T +++D +T   +        E  + +V+   F  +  ++ +G  +G   +W++   KV
Sbjct: 208 LTIKIWDYQTKSCVATL-----EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 220 --VLNLG 224
              LN+G
Sbjct: 263 EKTLNVG 269

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 81/217 (37%), Gaps = 37/217 (17%)
Query: 42  LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 101
           LSGH G V   +Y       L++ S D+T  +WDI  G  T VF G   +    D+    
Sbjct: 158 LSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI---- 211
Query: 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161
           +   N +  V+GS D+T  +W  ++   +    HG E D   V   P+ N +  G   G 
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVW--KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269
Query: 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 221
                  +GH                         G ++ +G  +    VWD    K + 
Sbjct: 270 XASVRTVSGH-------------------------GNIVVSGSYDNTLIVWDVAQXKCLY 304
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
            L    + H  RI       +     + S DT ++IW
Sbjct: 305 IL----SGHTDRIYSTIYDHERKRCISASXDTTIRIW 337

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 20/207 (9%)
Query: 33  DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-----LRTSVFGG 87
           D N+P   ++ GH   V    + P  D  + + S D T ++W+I  G     LR  V   
Sbjct: 71  DKNVP---LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127
Query: 88  EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVK 145
           E   GHT  V  V+   +   + +S   D+   +WD    + AV T     H   + +V 
Sbjct: 128 E---GHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVD 183
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY- 204
           +  DG    T   D   R+ + R G    V  ++   +E        F   G++L  G+ 
Sbjct: 184 WSRDGALICTSCRDKRVRVIEPRKG---TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240
Query: 205 --SNGDCYVWDTLLAKVVLNLGSLQNS 229
             S     +WDT   +  L+L  L  S
Sbjct: 241 RMSERQVALWDTKHLEEPLSLQELDTS 267

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 60/257 (23%)
Query: 48  YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 107
           Y+S   ++  E  +L   +      LWD+    R         + H+A V S+S    NS
Sbjct: 69  YISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRL-----RNMTSHSARVGSLSW---NS 119
Query: 108 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167
            +  SGS        D RVA   V T  GH  +V  +++ PDG    +G +D    ++  
Sbjct: 120 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179
Query: 168 RTGH----QLQVYYQQHGENEI-------------------------------------- 185
             G      LQ + Q  G  +                                       
Sbjct: 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 239
Query: 186 -PHVTSIAFSISGRLLFA--GYSNGDCYVWD-TLLAKVVLNLGSLQNSHEGRITCLGLSA 241
              V SI +S   + L +  G++     +W    +AKV    G     H  R+  L +S 
Sbjct: 240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----HTSRVLSLTMSP 294
Query: 242 DGSALCTGSWDTNLKIW 258
           DG+ + + + D  L++W
Sbjct: 295 DGATVASAAADETLRLW 311

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 13/135 (9%)
Query: 42  LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 101
           L GH+G V    +   +D  +I+ S D+T  +W      +        Q+ H A V    
Sbjct: 100 LIGHQGNVCSLSF---QDGVVISGSWDKTAKVW------KEGSLVYNLQA-HNASVWDAK 149
Query: 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161
           +   +   F++ S D T +LW      + ++TF G   DV       D   F + S+DG 
Sbjct: 150 VVSFSENKFLTASADKTIKLWQN---DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGL 206
Query: 162 CRLFDIRTGHQLQVY 176
            +L D  TG  L+ Y
Sbjct: 207 IKLVDXHTGDVLRTY 221

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 99/274 (36%), Gaps = 54/274 (19%)
Query: 45  HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE---------------- 88
           H+  V   Q+ P +     +SS D+T  +WD  T     VF  E                
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 89  -----------------------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 125
                                     GH  ++L+VS S     +  + S DS  +LWD R
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 126 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC------RLFDIRTGHQLQVYYQQ 179
            AS  + T   H G  +  +     N    G  +G C       L  + T ++++++   
Sbjct: 218 RASGCLITLDQHNGKKS--QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275
Query: 180 HGENEIPHVTSIAFSISGRLLFA---GYSNGDCYV-WDTLLAKVVLNLG---SLQNSHEG 232
           +GEN + +   +  +    L F    G S+   +V + + +A   +  G   ++   H  
Sbjct: 276 NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK 335
Query: 233 RITCLGLSADGSALCTGSWDTNLKIWAFGGYRRV 266
            + C    ++   L +GS D N+  W    Y  V
Sbjct: 336 TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 91/220 (41%), Gaps = 13/220 (5%)
Query: 45  HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE--FQSGHTADVLSVSI 102
           H  +V   +Y PD  +   ++ GD T VL++   G +T VF  +      H+  V  ++ 
Sbjct: 189 HTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 247
Query: 103 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 162
           S   +++  S S D T ++W+            G   +   +          + S +G  
Sbjct: 248 SPDGTKI-ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 306
Query: 163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN 222
              +   G   QV Y   G N+   +T+++ S  G+ LF+  + G    WD       ++
Sbjct: 307 NFVNPELGSIDQVRY---GHNKA--ITALSSSADGKTLFSADAEGHINSWDISTG---IS 358
Query: 223 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262
                + H   IT +  ++ G  L T SWD +LK+   GG
Sbjct: 359 NRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGG 397

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 25/226 (11%)
Query: 42  LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 101
           L+GH+  ++  +Y  + D  L + S D +  +W    G R          GHT  + S+ 
Sbjct: 28  LTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLGTL-----DGHTGTIWSID 81
Query: 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-----GTG 156
           +    ++  V+GS D + +LWD     + V T+      V  V+F P GN F        
Sbjct: 82  VD-CFTKYCVTGSADYSIKLWDVS-NGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVM 138
Query: 157 SDDGTCRLFDIR---TGHQLQVYYQQHGENEIPH-----VTSIAFSISGRLLFAGYSNGD 208
            + G+  +++I      H+L    ++     I H      T   +S  G+ + AG+ +G 
Sbjct: 139 KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK 198
Query: 209 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 254
              +D       ++   L   HE  I+ +  S D +   T S DTN
Sbjct: 199 ISKYDVSNNYEYVDSIDL---HEKSISDMQFSPDLTYFITSSRDTN 241

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 22/224 (9%)
Query: 40  RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
           R ++GH+  V C  +    + H++ SSG ++  +      +     G     GH+++V  
Sbjct: 170 RTMAGHQARVGCLSW----NRHVL-SSGSRSGAIHHHDVRIANHQIGT--LQGHSSEVCG 222
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTG-- 156
           ++   S+     SG  D+  ++WD R +S    T   H   V  V + P   N   TG  
Sbjct: 223 LAWR-SDGLQLASGGNDNVVQIWDAR-SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280
Query: 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA--GYSNGDCYVWDT 214
           + D     ++  TG ++         +    VTS+ +S   + + +  G+ + +  +W  
Sbjct: 281 TMDKQIHFWNAATGARVNTV------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334
Query: 215 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
             + +   +     +H+ R+    LS DG  L T + D NLK W
Sbjct: 335 SSSGLTKQVDI--PAHDTRVLYSALSPDGRILSTAASDENLKFW 376

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.81
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.78
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.73
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.72
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.72
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.7
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.69
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.67
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.67
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.65
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.63
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.63
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.63
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.63
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.6
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.59
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.58
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.55
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.51
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.51
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.5
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.49
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.49
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.49
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.47
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.47
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.46
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.46
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.46
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.46
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.44
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.41
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.4
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.39
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.37
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.37
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.37
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.33
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.33
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.32
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.26
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.2
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.17
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.16
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.14
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.09
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.08
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.07
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.05
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.03
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.01
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.0
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.0
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.97
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.95
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.89
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.87
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.83
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.81
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.79
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.78
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.76
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.75
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.7
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.68
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.66
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.6
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.6
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.6
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.57
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.55
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.53
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.49
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.48
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.46
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.42
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.4
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.39
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.37
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.3
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.29
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.14
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.11
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.11
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.08
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.01
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.01
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.0
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.94
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.88
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.86
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.85
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.84
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.84
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.8
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.78
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.77
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.74
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.73
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.73
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.7
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.69
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.69
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.64
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.61
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.54
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.49
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.49
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.47
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.46
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.46
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.46
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.45
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.43
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.3
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.2
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.12
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.11
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.09
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.06
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.04
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.95
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.95
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.94
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.92
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.91
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.78
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.45
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.15
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.11
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.11
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.98
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.93
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.87
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.67
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.36
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.21
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.21
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.12
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.97
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.94
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.84
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.73
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.55
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.34
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.18
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.67
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.44
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.41
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.75
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.56
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.37
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	92.11
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.7
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.86
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	90.83
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.21
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	89.89
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	89.6
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.57
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.16
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	88.64
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	87.73
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.53
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	87.49
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	86.68
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	86.43
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	85.94
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.6
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	83.76
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	83.21
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	81.4

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.4e-48  Score=323.67  Aligned_cols=267  Identities=78%  Similarity=1.368  Sum_probs=231.8

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      ++++|+|+|++|++++.|+++++|++.......+..+..+.+.+|.+.|.++.|.|+++..|++|+.|++|++||+.++.
T Consensus       112 ~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~  191 (380)
T 3iz6_a          112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ  191 (380)
T ss_dssp             CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred             EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence            36899999999999999999999999765444555667778899999999999999877789999999999999999998


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ....+......+|...+.++.+++.+..++++++.|+.|++||++........+.+|.+.|.+++|+|++++|++++.|+
T Consensus       192 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~  271 (380)
T 3iz6_a          192 RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG  271 (380)
T ss_dssp             EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS
T ss_pred             EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC
Confidence            88777655556899999999998877889999999999999999865567788889999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecC--CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          161 TCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      +|++||+++++.+..+.....  ......+.+++|+|+++++++|+.||.|++||....+....+......|.+.|.+++
T Consensus       272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~  351 (380)
T 3iz6_a          272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG  351 (380)
T ss_dssp             CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEE
T ss_pred             eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEE
Confidence            999999999887765543221  122345889999999999999999999999999887777666555568999999999


Q ss_pred             ECCCCCeEEEeECCCcEEEEecCceEecC
Q 024451          239 LSADGSALCTGSWDTNLKIWAFGGYRRVL  267 (267)
Q Consensus       239 ~~p~~~~l~sgs~dg~i~~w~~~~~~~~~  267 (267)
                      |+|+|++|++||.||+|++|++.++++++
T Consensus       352 ~s~dg~~l~sgs~D~~i~iW~~~~~~~iv  380 (380)
T 3iz6_a          352 LSSDGSALCTGSWDKNLKIWAFSGHRKIV  380 (380)
T ss_dssp             ECSSSSEEEEECTTSCEEEEECCSSSSCC
T ss_pred             ECCCCCEEEEeeCCCCEEEEecCCCcccC
Confidence            99999999999999999999999987653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.1e-43  Score=285.74  Aligned_cols=240  Identities=21%  Similarity=0.304  Sum_probs=205.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++.||+|++||+...       ...+.+.+|..+|.+++|+|++ .+|++|+.|++|++||+.++..
T Consensus        18 ~~~fsp~~~~l~s~~~dg~v~lWd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~   89 (304)
T 2ynn_A           18 GIDFHPTEPWVLTTLYSGRVELWNYETQ-------VEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGEK   89 (304)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCC-------ceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEECCCCcE
Confidence            6889999999999999999999998652       2456778899999999999975 5899999999999999999877


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDG  160 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~  160 (267)
                      ...+     .+|...|.+++++|. ++++++++.|+.|++||++........+.+|...|.+++|+| ++..|++|+.|+
T Consensus        90 ~~~~-----~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~  163 (304)
T 2ynn_A           90 VVDF-----EAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (304)
T ss_dssp             EEEE-----ECCSSCEEEEEECSS-SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred             EEEE-----eCCCCcEEEEEEcCC-CCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence            6665     368999999999974 568899999999999998755455667889999999999999 678999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc--CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      +|++||+++......+...    +...+..+.|+|  ++.+|++|+.||.|++||++..+.+..+    ..|...|.+++
T Consensus       164 ~v~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~----~~h~~~v~~~~  235 (304)
T 2ynn_A          164 TVKVWSLGQSTPNFTLTTG----QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL----EGHMSNVSFAV  235 (304)
T ss_dssp             EEEEEETTCSSCSEEEECC----CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE----ECCSSCEEEEE
T ss_pred             eEEEEECCCCCccceeccC----CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee----CCCCCCEEEEE
Confidence            9999999877655443322    223588888876  6789999999999999999887766554    46899999999


Q ss_pred             ECCCCCeEEEeECCCcEEEEecCce
Q 024451          239 LSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       239 ~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      |+|++++|++|+.||+|++|++...
T Consensus       236 ~~p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          236 FHPTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCC
Confidence            9999999999999999999997543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.7e-42  Score=283.00  Aligned_cols=239  Identities=54%  Similarity=1.070  Sum_probs=205.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++.|+++++|++....   ........+.+|.+.|.++.|++++  .+++++.|++|++||++++..
T Consensus       102 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~  176 (340)
T 1got_B          102 TCAYAPSGNYVACGGLDNICSIYNLKTRE---GNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQ  176 (340)
T ss_dssp             EEEECTTSSEEEEEETTCEEEEEETTTCS---BSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEE
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECccCC---CcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcE
Confidence            57899999999999999999999986532   2233456678999999999999864  489999999999999999877


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...+     .+|...|.+++++| +++++++++.|+.|++||++. ......+.+|...|.+++|+|++++|++++.|++
T Consensus       177 ~~~~-----~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~  249 (340)
T 1got_B          177 TTTF-----TGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             EEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEE-----cCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc
Confidence            7665     36889999999997 567899999999999999975 3456778899999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      |++||+++++.+..+.   .......+.+++|+|+++++++|+.||.|++||....+....+    ..|.++|.+++|+|
T Consensus       250 v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~----~~h~~~v~~~~~s~  322 (340)
T 1got_B          250 CRLFDLRADQELMTYS---HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL----AGHDNRVSCLGVTD  322 (340)
T ss_dssp             EEEEETTTTEEEEEEC---CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEEEECT
T ss_pred             EEEEECCCCcEEEEEc---cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe----ecCCCcEEEEEEcC
Confidence            9999999877654432   1222346999999999999999999999999998877665444    46999999999999


Q ss_pred             CCCeEEEeECCCcEEEEe
Q 024451          242 DGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~  259 (267)
                      +|++|++||.||.|+||+
T Consensus       323 dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          323 DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEcCCccEEecC
Confidence            999999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6e-42  Score=281.28  Aligned_cols=244  Identities=43%  Similarity=0.890  Sum_probs=206.0

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      ++++|+|+|..|++++.|+++++|++..... .........+.+|...|.++.|+|++ ..|++++.|++|++||++++.
T Consensus       110 ~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~  187 (354)
T 2pbi_B          110 MACAYAPSGCAIACGGLDNKCSVYPLTFDKN-ENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQ  187 (354)
T ss_dssp             CEEEECTTSSEEEEESTTSEEEEEECCCCTT-CCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEECCCCCEEEEeeCCCCEEEEEEecccc-ccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCe
Confidence            3689999999999999999999999865321 11223445677899999999999975 579999999999999999987


Q ss_pred             eEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  159 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  159 (267)
                      ....+     .+|...+.++.+.+. ++.++++++.|+.|++||++.. .....+.+|...|.+++|+|++++|++++.|
T Consensus       188 ~~~~~-----~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D  261 (354)
T 2pbi_B          188 LLQSF-----HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQAFETHESDVNSVRYYPSGDAFASGSDD  261 (354)
T ss_dssp             EEEEE-----ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEE-----cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCeEEEEEeCCCCEEEEEeCC
Confidence            76665     368889999999875 3578999999999999999854 4677788999999999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      ++|++||++..+....+..   ......+.+++|+|++.++++|+.|+.|++||+..++.+..+    ..|...|.+++|
T Consensus       262 ~~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l----~~h~~~v~~l~~  334 (354)
T 2pbi_B          262 ATCRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL----FGHENRVSTLRV  334 (354)
T ss_dssp             SCEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE----CCCSSCEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE----ECCCCcEEEEEE
Confidence            9999999998766544321   122346899999999999999999999999999877665443    479999999999


Q ss_pred             CCCCCeEEEeECCCcEEEEe
Q 024451          240 SADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w~  259 (267)
                      +|+|++|++|+.||+|++|+
T Consensus       335 spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          335 SPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CTTSSCEEEEETTSEEEEEC
T ss_pred             CCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999995

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.4e-42  Score=280.79  Aligned_cols=240  Identities=19%  Similarity=0.242  Sum_probs=194.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++ .|++++.||+|++||+.....   .......+.+|++.|++++|+|++ .+|++|+.|++|++||++++..
T Consensus        87 ~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~---~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~  161 (344)
T 4gqb_B           87 DLTWVGER-GILVASDSGAVELWELDENET---LIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVV  161 (344)
T ss_dssp             EEEEETTT-EEEEEETTSEEEEEEECTTSS---CEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEeCCC-eEEEEECCCEEEEEeccCCCc---eeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE
Confidence            57899985 588999999999999875321   111223456899999999999976 5899999999999999999987


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe--eccccceeEEEEecC-CCEEEEeeC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGHEGDVNTVKFFPD-GNRFGTGSD  158 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~-~~~l~~~~~  158 (267)
                      ...+     .+|...|.+++|++.+..++++++.|+.|++||++... ....+  ..|...+.+++|+|+ ++++++|+.
T Consensus       162 ~~~~-----~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~  235 (344)
T 4gqb_B          162 LSSY-----RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE  235 (344)
T ss_dssp             EEEE-----CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-CEEECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred             EEEE-----cCcCCceEEEEecCCCCCceeeeccccccccccccccc-eeeeeecceeeccceeeeecCCCCcceEEecc
Confidence            7766     47999999999998777789999999999999997543 44444  245567899999995 578899999


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  237 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  237 (267)
                      |++|++||+++++.+..+..     +...|.+++|+|++ ++|++|+.||.|++||...++... .    ..|.+.|.++
T Consensus       236 dg~v~~wd~~~~~~~~~~~~-----h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~----~~H~~~V~~v  305 (344)
T 4gqb_B          236 NGTVSLVDTKSTSCVLSSAV-----HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S----QAHRDFVRDA  305 (344)
T ss_dssp             TSEEEEEESCC--CCEEEEC-----CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E----CCCSSCEEEE
T ss_pred             CCcEEEEECCCCcEEEEEcC-----CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E----cCCCCCEEEE
Confidence            99999999999887765532     23469999999998 578999999999999998776543 2    4799999999


Q ss_pred             EECCCCC-eEEEeECCCcEEEEecCc
Q 024451          238 GLSADGS-ALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       238 ~~~p~~~-~l~sgs~dg~i~~w~~~~  262 (267)
                      +|+|+++ +|++||.||+|++|++..
T Consensus       306 ~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          306 TWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             EEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            9999986 577999999999999754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6.8e-42  Score=286.27  Aligned_cols=237  Identities=23%  Similarity=0.373  Sum_probs=205.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++++|++|+.|++|++||+....       ..+.+.+|...|.+++|+|++ .+|++|+.|++|++||+.+...
T Consensus       113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-------~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~~~~~~  184 (410)
T 1vyh_C          113 RVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQGFEC  184 (410)
T ss_dssp             EEEECSSSSEEEEEESSSCEEEEETTTCC-------CCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEETTSSCE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEeccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce
Confidence            67899999999999999999999987532       456788999999999999975 5899999999999999988766


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...+     .+|...|.+++|+|. +.++++++.|+.|++||++.. ..+..+.+|...|.++.++|+++++++++.|++
T Consensus       185 ~~~~-----~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~  257 (410)
T 1vyh_C          185 IRTM-----HGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTG-YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  257 (410)
T ss_dssp             EECC-----CCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eEEE-----cCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCC-cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence            5544     478899999999974 568899999999999999754 467788899999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC--------------------CCEEEEEEeCCeEEEEeCCccceee
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS--------------------GRLLFAGYSNGDCYVWDTLLAKVVL  221 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~g~~dg~i~i~d~~~~~~~~  221 (267)
                      |++||+++++....+..     +...|.+++|+|+                    +.++++|+.||.|++||+..++.+.
T Consensus       258 v~vwd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~  332 (410)
T 1vyh_C          258 VRVWVVATKECKAELRE-----HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM  332 (410)
T ss_dssp             EEEEETTTCCEEEEECC-----CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEEECCCCceeeEecC-----CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            99999998876554422     3346999999986                    6789999999999999998877665


Q ss_pred             ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .+    ..|...|.+++|+|+|++|++|+.||.|++|++..
T Consensus       333 ~~----~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          333 TL----VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             EE----ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred             EE----ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            54    46889999999999999999999999999999754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-41  Score=284.64  Aligned_cols=235  Identities=25%  Similarity=0.440  Sum_probs=204.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++|+.|++|++||+...       .+.+.+.+|...|.+++|+|++ .+|++|+.|++|++||+.++..
T Consensus       155 ~v~~~~~~~~l~sgs~D~~i~iwd~~~~-------~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~  226 (410)
T 1vyh_C          155 DISFDHSGKLLASCSADMTIKLWDFQGF-------ECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYC  226 (410)
T ss_dssp             EEEECTTSSEEEEEETTSCCCEEETTSS-------CEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcE
Confidence            5789999999999999999999998642       3567788999999999999975 5899999999999999999877


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC------------
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD------------  149 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~------------  149 (267)
                      ...+     .+|...+.++.+++ ++.++++++.|+.|++||++.. .....+.+|...|.++.|+|+            
T Consensus       227 ~~~~-----~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  299 (410)
T 1vyh_C          227 VKTF-----TGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGS  299 (410)
T ss_dssp             EEEE-----ECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred             EEEE-----eCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence            6665     36888999999986 5678999999999999999753 456678899999999999996            


Q ss_pred             --------CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee
Q 024451          150 --------GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL  221 (267)
Q Consensus       150 --------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~  221 (267)
                              +.++++|+.|++|++||+++++.+..+..     +...|.+++|+|++++|++|+.||.|++||....+.+.
T Consensus       300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~-----h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~  374 (410)
T 1vyh_C          300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-----HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK  374 (410)
T ss_dssp             C-------CCEEEEEETTSEEEEEETTTTEEEEEEEC-----CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE
T ss_pred             cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC-----CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence                    67899999999999999999887665532     23469999999999999999999999999998776655


Q ss_pred             ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      .+    ..|...|++++|+|++++|++||.||+|++|++
T Consensus       375 ~~----~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          375 TL----NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EE----ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EE----cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            44    468899999999999999999999999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.5e-41  Score=271.12  Aligned_cols=248  Identities=19%  Similarity=0.266  Sum_probs=195.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+|+|++|++++.|++|++||+....     ......+.+|.++|++++|+|. .+.+|++|+.|++|++||++++.
T Consensus        14 ~~~~s~~g~~las~s~D~~v~iw~~~~~~-----~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~   88 (297)
T 2pm7_B           14 DAVMDYYGKRMATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR   88 (297)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEBCSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEecCCCC-----cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence            57899999999999999999999986421     1245678899999999999763 34689999999999999998763


Q ss_pred             --eEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCccc-ceEEeeccccceeEEEEecC-------
Q 024451           81 --RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPD-------  149 (267)
Q Consensus        81 --~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~-------  149 (267)
                        ....+     .+|...|.+++|+|.. +.++++++.|+.|++||++.... ....+.+|...|.+++|+|+       
T Consensus        89 ~~~~~~~-----~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~  163 (297)
T 2pm7_B           89 WSQIAVH-----AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE  163 (297)
T ss_dssp             BCCCEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred             eEEEEEe-----ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence              22222     4688899999999752 57899999999999999875422 24567789999999999996       


Q ss_pred             ------CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC---CEEEEEEeCCeEEEEeCCccce-
Q 024451          150 ------GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG---RLLFAGYSNGDCYVWDTLLAKV-  219 (267)
Q Consensus       150 ------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~g~~dg~i~i~d~~~~~~-  219 (267)
                            +++|++|+.|++|++||+++++........ ...+...|.+++|+|++   .+|++|+.|+.|++||...... 
T Consensus       164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~-l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             ------CCEEEEEETTSCEEEEEEETTTTEEEEEEE-ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE-ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                  579999999999999999876522111111 12344579999999985   8999999999999999865321 


Q ss_pred             -eeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          220 -VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       220 -~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                       ..... ....|...|.+++|+|+|++||+++.||.|+||+..
T Consensus       243 ~~~~~~-~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          243 WKKTLL-KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CEEEES-SSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             cceeee-ecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence             11111 113577899999999999999999999999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.9e-41  Score=272.85  Aligned_cols=235  Identities=18%  Similarity=0.306  Sum_probs=203.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++.++++++.|++|++||+...       .....+.+|...+.+++|+|++ .+|++++.|+.|++||++++..
T Consensus        85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~-------~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~  156 (321)
T 3ow8_A           85 SVDISHTLPIAASSSLDAHIRLWDLENG-------KQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKK  156 (321)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTT-------EEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCC-------CEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCce
Confidence            5789999999999999999999998652       2445667888889999999976 5899999999999999998876


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...+     ..|...+.+++++| +++++++++.|+.|++||++. .+.+..+.+|...|.+++|+|++++|++++.|++
T Consensus       157 ~~~~-----~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~  229 (321)
T 3ow8_A          157 EYSL-----DTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY  229 (321)
T ss_dssp             EEEE-----ECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC
T ss_pred             eEEe-----cCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCC-CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe
Confidence            6554     24677899999996 567899999999999999975 4567778899999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      |++||+++++....+.     .+...|.+++|+|++.+|++|+.||.|++||+.+.+.+..+    ..|.+.|.+++|+|
T Consensus       230 i~iwd~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~----~~h~~~v~~v~~s~  300 (321)
T 3ow8_A          230 IKIYDVQHANLAGTLS-----GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF----FDHQDQVWGVKYNG  300 (321)
T ss_dssp             EEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE----CCCSSCEEEEEECT
T ss_pred             EEEEECCCcceeEEEc-----CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE----cCCCCcEEEEEECC
Confidence            9999999877655432     23457999999999999999999999999999888776655    46889999999999


Q ss_pred             CCCeEEEeECCCcEEEEec
Q 024451          242 DGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~  260 (267)
                      ++++|++++.||.|++|+.
T Consensus       301 ~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          301 NGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             TSSEEEEEETTCCEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEEeC
Confidence            9999999999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.3e-41  Score=273.32  Aligned_cols=240  Identities=20%  Similarity=0.370  Sum_probs=201.2

Q ss_pred             ceeeCCC----CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451            2 TCAFSPT----GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT   77 (267)
Q Consensus         2 ~~~~~~~----g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~   77 (267)
                      +++|+|+    +.+|+||+.|++|++|++....     ......+.+|...|.+++|+|++ .++++++.|++|++||+.
T Consensus        37 ~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~-----~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~i~lWd~~  110 (321)
T 3ow8_A           37 SVAWGTNKKENSETVVTGSLDDLVKVWKWRDER-----LDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLE  110 (321)
T ss_dssp             EEEEC-------CEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETT
T ss_pred             EEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC-----eeeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECC
Confidence            5788874    6799999999999999986421     22345688999999999999975 589999999999999999


Q ss_pred             CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451           78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  157 (267)
                      ++.....+.     .|...+.+++|+| +++++++++.|+.|++|+++.. .....+..|...+.+++|+|++++|++++
T Consensus       111 ~~~~~~~~~-----~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~-~~~~~~~~~~~~v~~~~~spdg~~lasg~  183 (321)
T 3ow8_A          111 NGKQIKSID-----AGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESG-KKEYSLDTRGKFILSIAYSPDGKYLASGA  183 (321)
T ss_dssp             TTEEEEEEE-----CCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTC-SEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCEEEEEe-----CCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCC-ceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence            987766553     4666788899986 5678899999999999999754 35566778888999999999999999999


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  237 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  237 (267)
                      .|+.|++||+++++.+..+.     .+...|.+++|+|++++|++|+.||.|++||++..+....+    ..|...|.++
T Consensus       184 ~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~h~~~v~~~  254 (321)
T 3ow8_A          184 IDGIINIFDIATGKLLHTLE-----GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL----SGHASWVLNV  254 (321)
T ss_dssp             TTSCEEEEETTTTEEEEEEC-----CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE----CCCSSCEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEc-----ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE----cCCCCceEEE
Confidence            99999999999987665542     23346899999999999999999999999999877665444    4689999999


Q ss_pred             EECCCCCeEEEeECCCcEEEEecCce
Q 024451          238 GLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       238 ~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      +|+|++++|++|+.|++|++|++...
T Consensus       255 ~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          255 AFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCC
Confidence            99999999999999999999998643

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.3e-40  Score=267.83  Aligned_cols=242  Identities=21%  Similarity=0.378  Sum_probs=199.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++++|++++.|++|++||.....       ....+..|...|.+++|+|++ .++++|+.|+.|++||+.+...
T Consensus        60 ~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-------~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~  131 (340)
T 1got_B           60 AMHWGTDSRLLLSASQDGKLIIWDSYTTN-------KVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREG  131 (340)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTCC-------EEEEEECSSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTCSB
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCC-------cceEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEECccCCC
Confidence            57899999999999999999999986422       445677899999999999975 5899999999999999987531


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ..... ....+|...+.++.+++. + .+++++.|+.|++||++. ......+.+|.+.|.+++|+|+++++++++.|++
T Consensus       132 ~~~~~-~~~~~h~~~v~~~~~~~~-~-~l~s~s~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~  207 (340)
T 1got_B          132 NVRVS-RELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIET-GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             SCEEE-EEEECCSSCEEEEEEEET-T-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cceeE-EEecCCCccEEEEEECCC-C-cEEEEECCCcEEEEECCC-CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence            11110 112478899999999864 3 478999999999999975 4466778899999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      |++||+++++....+..     +...|.+++|+|++++|++|+.||.|++||++..+.+..+.  ...+...|.+++|+|
T Consensus       208 v~~wd~~~~~~~~~~~~-----h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~~~~v~~~~~s~  280 (340)
T 1got_B          208 AKLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS--HDNIICGITSVSFSK  280 (340)
T ss_dssp             EEEEETTTCSEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CTTCCSCEEEEEECT
T ss_pred             EEEEECCCCeeEEEEcC-----CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc--cCCcccceEEEEECC
Confidence            99999998876655422     33469999999999999999999999999998776554432  123445799999999


Q ss_pred             CCCeEEEeECCCcEEEEecCc
Q 024451          242 DGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +|++|++|+.||.|++|++..
T Consensus       281 ~g~~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          281 SGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             TSSEEEEEETTSEEEEEETTT
T ss_pred             CCCEEEEECCCCeEEEEEccc
Confidence            999999999999999999744

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.4e-40  Score=273.50  Aligned_cols=241  Identities=19%  Similarity=0.294  Sum_probs=191.8

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+++ +++++.||+|++||+......   ........+|.+.|++++|+|++ .+|++|+.|++|++||++++..
T Consensus        99 ~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~---~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~  173 (357)
T 4g56_B           99 DVAWVSEKG-ILVASDSGAVELWEILEKESL---LVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAV  173 (357)
T ss_dssp             EEEEETTTE-EEEEETTSCEEEC-----------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEcCCCC-EEEEECCCEEEEeecccccee---EEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE
Confidence            578999987 456788999999998653211   11222456899999999999976 5899999999999999999887


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce-EEeeccccceeEEEEecC-CCEEEEeeCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGDVNTVKFFPD-GNRFGTGSDD  159 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~l~~~~~d  159 (267)
                      ...+     .+|...|.++++++....++++++.|+.|++||++...... .....|...+.+++|+|+ +.+|++|+.|
T Consensus       174 ~~~~-----~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d  248 (357)
T 4g56_B          174 LKSY-----NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET  248 (357)
T ss_dssp             EEEE-----CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred             EEEE-----cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc
Confidence            7666     36889999999998777788999999999999997543221 123356778999999997 5689999999


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      +.|++||+++++....+..     +...|.+++|+|++ ++|++|+.||.|++||+..++.+..     ..|.+.|++++
T Consensus       249 ~~i~~wd~~~~~~~~~~~~-----~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~-----~~H~~~V~~va  318 (357)
T 4g56_B          249 GNVSLVNIKNPDSAQTSAV-----HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD-----LSHRDFVTGVA  318 (357)
T ss_dssp             SCEEEEESSCGGGCEEECC-----CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE-----CCCSSCEEEEE
T ss_pred             cceeEEECCCCcEeEEEec-----cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE-----CCCCCCEEEEE
Confidence            9999999998877655432     23469999999987 5789999999999999988776543     26899999999


Q ss_pred             ECC-CCCeEEEeECCCcEEEEecCc
Q 024451          239 LSA-DGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       239 ~~p-~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      |+| ++++|++||.||+|++|++..
T Consensus       319 fsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          319 WSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             EeCCCCCEEEEEcCCCeEEEEECCC
Confidence            999 799999999999999999754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.4e-40  Score=265.95  Aligned_cols=238  Identities=22%  Similarity=0.343  Sum_probs=196.3

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++.|++|++||+...       .....+.+|...|.+++|+|++ .++++|+.|++|++||+.... 
T Consensus        70 ~~~~s~dg~~l~s~s~D~~v~~wd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~-  140 (319)
T 3frx_A           70 DCTLTADGAYALSASWDKTLRLWDVATG-------ETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQC-  140 (319)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCE-
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCC-------CeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe-
Confidence            5789999999999999999999998653       2456788999999999999975 589999999999999997543 


Q ss_pred             EEEeCCccccCCccceEEEEEeCCC-----CeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEe
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSN-----SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG  156 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  156 (267)
                      ...+     .+|...+.++.+.|..     ...+++++.|+.|++||++. ......+.+|...|.+++|+|++++|+++
T Consensus       141 ~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~sp~g~~l~s~  214 (319)
T 3frx_A          141 LATL-----LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDGTLIASA  214 (319)
T ss_dssp             EEEE-----CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred             EEEE-----eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence            3333     3688899999998642     34789999999999999975 34566778999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc----cccCCccc
Q 024451          157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG----SLQNSHEG  232 (267)
Q Consensus       157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~  232 (267)
                      +.|++|++||+++++.+..+..      ...+.+++|+|++.+++++.. ..+++|++........+.    .....|..
T Consensus       215 ~~dg~i~iwd~~~~~~~~~~~~------~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~  287 (319)
T 3frx_A          215 GKDGEIMLWNLAAKKAMYTLSA------QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEP  287 (319)
T ss_dssp             ETTCEEEEEETTTTEEEEEEEC------CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCC
T ss_pred             eCCCeEEEEECCCCcEEEEecC------CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCc
Confidence            9999999999998877655432      135899999999999998865 459999987665443322    11234667


Q ss_pred             eEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          233 RITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .+.+++|+|+|++|++|+.||.|++|++.
T Consensus       288 ~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          288 HAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             ceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence            89999999999999999999999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.5e-41  Score=273.87  Aligned_cols=248  Identities=19%  Similarity=0.164  Sum_probs=191.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCC---CCCC-CCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPT---DKDG-NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT   77 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~---~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~   77 (267)
                      +++|+|||++|++++ |+++++||.....   .... ..........|...|.+++|+|++  .+++|+.||+|+|||++
T Consensus        35 ~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~  111 (344)
T 4gqb_B           35 AARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER--GILVASDSGAVELWELD  111 (344)
T ss_dssp             EEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT--EEEEEETTSEEEEEEEC
T ss_pred             EEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC--eEEEEECCCEEEEEecc
Confidence            578999999999887 7788888742100   0000 001111223456789999999963  68899999999999999


Q ss_pred             CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCC-CEEEEe
Q 024451           78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTG  156 (267)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~  156 (267)
                      +++....... ...+|...|.+++|++ +++++++++.|+.|++||++. .+.+..+.+|...|.+++|+|++ .+|+++
T Consensus       112 ~~~~~~~~~~-~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~  188 (344)
T 4gqb_B          112 ENETLIVSKF-CKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDSVFLSC  188 (344)
T ss_dssp             TTSSCEEEEE-EEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             CCCceeEeec-cccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCC-CcEEEEEcCcCCceEEEEecCCCCCceeee
Confidence            8764433321 1247999999999996 567899999999999999975 45678889999999999999987 478999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC-CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEE
Q 024451          157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  235 (267)
Q Consensus       157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  235 (267)
                      +.|++|++||+++++....+...   .+...+.+++|+|+ ++++++|+.||.|++||+++.+.+..+    ..|...|.
T Consensus       189 s~D~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~----~~h~~~v~  261 (344)
T 4gqb_B          189 SEDNRILLWDTRCPKPASQIGCS---APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS----AVHSQCVT  261 (344)
T ss_dssp             ETTSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE----ECCSSCEE
T ss_pred             ccccccccccccccceeeeeecc---eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE----cCCCCCEE
Confidence            99999999999988766543221   12235889999985 568899999999999999888776554    46899999


Q ss_pred             EEEECCCC-CeEEEeECCCcEEEEecCc
Q 024451          236 CLGLSADG-SALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       236 ~~~~~p~~-~~l~sgs~dg~i~~w~~~~  262 (267)
                      +++|+|++ ++||+||.|++|+||++..
T Consensus       262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~  289 (344)
T 4gqb_B          262 GLVFSPHSVPFLASLSEDCSLAVLDSSL  289 (344)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred             EEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence            99999998 5899999999999999754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.4e-40  Score=272.48  Aligned_cols=243  Identities=24%  Similarity=0.464  Sum_probs=196.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++.|++|++||+...       .....+.+|...|++++|+|++ .+|++++.|++|++||+.++..
T Consensus       128 ~v~~s~dg~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~  199 (393)
T 1erj_A          128 SVCFSPDGKFLATGAEDRLIRIWDIENR-------KIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQC  199 (393)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCC-------cEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCee
Confidence            5789999999999999999999998642       2556788999999999999976 5799999999999999998876


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe-------eccccceeEEEEecCCCEEE
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-------HGHEGDVNTVKFFPDGNRFG  154 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~  154 (267)
                      ...+.      +...+.++++++.+++++++++.|+.|++||++... ....+       .+|...|.+++|+|++++++
T Consensus       200 ~~~~~------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~  272 (393)
T 1erj_A          200 SLTLS------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQSVV  272 (393)
T ss_dssp             EEEEE------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred             EEEEE------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-EEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence            65542      456788999998678899999999999999987533 33333       57889999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEE-------eecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc
Q 024451          155 TGSDDGTCRLFDIRTGHQLQVYY-------QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  227 (267)
Q Consensus       155 ~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~  227 (267)
                      +++.|++|++||+++........       ......+...|.+++|++++.+|++|+.||.|++||...++.+..+    
T Consensus       273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l----  348 (393)
T 1erj_A          273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML----  348 (393)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE----
T ss_pred             EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE----
Confidence            99999999999997643211000       0000123356999999999999999999999999999887766544    


Q ss_pred             CCccceEEEEEECC------CCCeEEEeECCCcEEEEecCce
Q 024451          228 NSHEGRITCLGLSA------DGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       228 ~~~~~~v~~~~~~p------~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      ..|...|.+++|+|      ++++|++||.||+|+||++...
T Consensus       349 ~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          349 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            46899999999986      6889999999999999997543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.4e-40  Score=268.76  Aligned_cols=255  Identities=21%  Similarity=0.329  Sum_probs=196.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++.|+++++|+.....     ......+.+|...|.+++|+|++ .+|++|+.|++|++||+.++..
T Consensus        66 ~~~~sp~g~~l~s~s~D~~v~iw~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~  139 (345)
T 3fm0_A           66 KVAWSPCGNYLASASFDATTCIWKKNQDD-----FECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDE  139 (345)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEECCC------EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSC
T ss_pred             EEEECCCCCEEEEEECCCcEEEEEccCCC-----eEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCC
Confidence            57899999999999999999999986421     23456788999999999999975 5899999999999999987533


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc-cceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ....  ....+|...|.+++|+|. ++++++++.|+.|++||.+... .....+.+|...|.+++|+|++++|++++.|+
T Consensus       140 ~~~~--~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~  216 (345)
T 3fm0_A          140 YECV--SVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR  216 (345)
T ss_dssp             EEEE--EEECCCCSCEEEEEECSS-SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEE--EEecCcCCCeEEEEECCC-CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence            2211  112468889999999974 5688999999999999986433 23456789999999999999999999999999


Q ss_pred             cEEEEeCCCCeee------------EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee----ee-c
Q 024451          161 TCRLFDIRTGHQL------------QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV----LN-L  223 (267)
Q Consensus       161 ~i~iwd~~~~~~~------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~----~~-~  223 (267)
                      +|++||.......            ..... ....+...|.+++|+|++..|++++.|+.|++|+.......    .. .
T Consensus       217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~  295 (345)
T 3fm0_A          217 TVRIWRQYLPGNEQGVACSGSDPSWKCICT-LSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT  295 (345)
T ss_dssp             CEEEEEEECTTCTTCCCCC---CEEEEEEE-ECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred             eEEEeccccCCCCccceeeccCCccceeEE-ecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence            9999996432110            11111 11113457999999999999999999999999997543211    00 1


Q ss_pred             ccccCCccceEEEEEECCCC-CeEEEeECCCcEEEEecCceEec
Q 024451          224 GSLQNSHEGRITCLGLSADG-SALCTGSWDTNLKIWAFGGYRRV  266 (267)
Q Consensus       224 ~~~~~~~~~~v~~~~~~p~~-~~l~sgs~dg~i~~w~~~~~~~~  266 (267)
                      ......|...|.+++|+|++ .+||+||.||+|++|++...+++
T Consensus       296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             EEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred             eeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence            11235789999999999998 49999999999999998776654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.8e-41  Score=271.31  Aligned_cols=248  Identities=19%  Similarity=0.245  Sum_probs=193.3

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+|+|++|++++.|++|++||+....     ......+.+|.+.|++++|+|. ++.+|++|+.|++|++||++++.
T Consensus        18 ~v~~s~~g~~lasgs~D~~v~lwd~~~~~-----~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~   92 (316)
T 3bg1_A           18 DAQMDYYGTRLATCSSDRSVKIFDVRNGG-----QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT   92 (316)
T ss_dssp             EEEECGGGCEEEEEETTTEEEEEEEETTE-----EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC
T ss_pred             EeeEcCCCCEEEEEeCCCeEEEEEecCCC-----cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc
Confidence            57899999999999999999999986421     1234568899999999999753 34689999999999999998763


Q ss_pred             --eEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCccc--ceEEeeccccceeEEEEecC------
Q 024451           81 --RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPD------  149 (267)
Q Consensus        81 --~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~------  149 (267)
                        ....+     .+|...|.+++|+|.. +.++++++.|+.|++||++....  ....+.+|...|.++.|+|+      
T Consensus        93 ~~~~~~~-----~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           93 WEKSHEH-----AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CCEEEEE-----CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             ceEEEEc-----cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence              22222     4688999999999753 56899999999999999875322  13445688899999999997      


Q ss_pred             -----------CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC----CEEEEEEeCCeEEEEeC
Q 024451          150 -----------GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG----RLLFAGYSNGDCYVWDT  214 (267)
Q Consensus       150 -----------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~g~~dg~i~i~d~  214 (267)
                                 +++|++++.|++|++||++.........  ....+...|.+++|+|++    .+|++|+.||.|++||+
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~--~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~  245 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQ--KLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC  245 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEE--CCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceee--ecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence                       4789999999999999997543211111  112344579999999986    79999999999999998


Q ss_pred             CccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          215 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      ...............|.+.|.+++|+|++++||+|+.||.|+||+..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          246 DDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             SSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             cCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            65211000001113578899999999999999999999999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2e-39  Score=260.85  Aligned_cols=238  Identities=22%  Similarity=0.375  Sum_probs=196.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++++|++++.|++|++||+...       .....+.+|...|.+++|+|++ .+|++|+.|++|++||++++..
T Consensus        60 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~  131 (304)
T 2ynn_A           60 AGKFIARKNWIIVGSDDFRIRVFNYNTG-------EKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA  131 (304)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTE
T ss_pred             EEEEeCCCCEEEEECCCCEEEEEECCCC-------cEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcc
Confidence            5789999999999999999999998653       2456788999999999999976 5899999999999999987633


Q ss_pred             E-EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec--CCCEEEEeeC
Q 024451           82 T-SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSD  158 (267)
Q Consensus        82 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~  158 (267)
                      . ..+     .+|...|.+++|+|.+..++++++.|+.|++||++..........+|...+..+.|+|  +++++++++.
T Consensus       132 ~~~~~-----~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~  206 (304)
T 2ynn_A          132 LEQTF-----EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (304)
T ss_dssp             EEEEE-----CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred             hhhhh-----cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence            2 333     4789999999999877788999999999999999765444444456778899999987  6789999999


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      |++|++||+++++.+..+..     +...|.+++|+|++++|++|+.||.|++||..+.+....+    ..|.+.+.+++
T Consensus       207 D~~i~iWd~~~~~~~~~~~~-----h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~----~~~~~~~~~~~  277 (304)
T 2ynn_A          207 DLTIKIWDYQTKSCVATLEG-----HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL----NVGLERSWCIA  277 (304)
T ss_dssp             TSEEEEEETTTTEEEEEEEC-----CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE----CCSSSSEEEEE
T ss_pred             CCeEEEEeCCCCccceeeCC-----CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec----cCCCccEEEEE
Confidence            99999999999887665532     2346999999999999999999999999999888776554    45778999999


Q ss_pred             ECCCCC--eEEEeECCCcEEEEecCc
Q 024451          239 LSADGS--ALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       239 ~~p~~~--~l~sgs~dg~i~~w~~~~  262 (267)
                      |+|++.  ++++|+.| .+.+|++..
T Consensus       278 ~~~~~~~~~~asg~~~-g~~~~~~~~  302 (304)
T 2ynn_A          278 THPTGRKNYIASGFDN-GFTVLSLGN  302 (304)
T ss_dssp             ECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred             ECCCCCceEEEEecCC-ceEEEEecc
Confidence            999875  58887755 566776654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-39  Score=264.49  Aligned_cols=250  Identities=24%  Similarity=0.346  Sum_probs=184.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC--
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--   79 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--   79 (267)
                      +++|+|++++|++++.|++|++||................+.+|...|.+++|+|++ .+|++|+.|++|++||+...  
T Consensus        63 ~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~  141 (330)
T 2hes_X           63 SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGE  141 (330)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCC
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCC
Confidence            578999999999999999999999864321112234556788999999999999975 58999999999999999532  


Q ss_pred             --eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc-cceEEeeccccceeEEEEecC--CCEEE
Q 024451           80 --LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFG  154 (267)
Q Consensus        80 --~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~  154 (267)
                        .....+     .+|...|.+++|+| ++.++++++.|+.|++||.+... ..+..+.+|...|.+++|+|+  +..++
T Consensus       142 ~~~~~~~~-----~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  215 (330)
T 2hes_X          142 EYECISVL-----QEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC  215 (330)
T ss_dssp             CCEEEEEE-----CCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred             CeEEEEEe-----ccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence              222233     46889999999997 46789999999999999976432 356778899999999999998  67899


Q ss_pred             EeeCCCcEEEEeCCCCee----eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc--eeeecccccC
Q 024451          155 TGSDDGTCRLFDIRTGHQ----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--VVLNLGSLQN  228 (267)
Q Consensus       155 ~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~~~  228 (267)
                      +++.|++|++||++.+..    ...........+...|.+++|++++ .|++++.||.|++||...++  ....   ...
T Consensus       216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~---~~~  291 (330)
T 2hes_X          216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAK---RAL  291 (330)
T ss_dssp             EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEE---ESC
T ss_pred             EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEec---ccc
Confidence            999999999999865411    0011111111244579999999655 88999999999999976543  1211   123


Q ss_pred             Cccc-eEEEEEECC--CCCeEEEeECCCcEEEEecCc
Q 024451          229 SHEG-RITCLGLSA--DGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       229 ~~~~-~v~~~~~~p--~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .|.. .|.+++|+|  ++++||+||.||+|+||++..
T Consensus       292 ~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          292 CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            5766 899999999  789999999999999999753

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.7e-40  Score=269.78  Aligned_cols=247  Identities=17%  Similarity=0.183  Sum_probs=190.7

Q ss_pred             ceeeCCCCCeEEEccC------CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEe
Q 024451            2 TCAFSPTGQSVACGGL------DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD   75 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~------d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd   75 (267)
                      +++|+|||++|++++.      |+++++|+......   .........+|...|.+++|+|++  .+++++.|++|++||
T Consensus        47 ~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~---~~~~~~~~~~~~~~V~~~~~s~d~--~~l~~s~dg~v~lWd  121 (357)
T 4g56_B           47 AVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP---NESLCTAGVQTEAGVTDVAWVSEK--GILVASDSGAVELWE  121 (357)
T ss_dssp             EEEECSSSCEEEEEECSSSSSCCEEEEEESSCC------CGGGCSEEEECSSCEEEEEEETTT--EEEEEETTSCEEEC-
T ss_pred             EEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc---ceeEecccCCCCCCEEEEEEcCCC--CEEEEECCCEEEEee
Confidence            5789999999999997      78899998754221   112233445788999999999964  467889999999999


Q ss_pred             CCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEE
Q 024451           76 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFG  154 (267)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~  154 (267)
                      +.++....... ....+|...|.+++|+| +++++++++.|+.|++||++. ......+.+|...|.+++|+|+++ +++
T Consensus       122 ~~~~~~~~~~~-~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~s~~~~~~~~  198 (357)
T 4g56_B          122 ILEKESLLVNK-FAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQ-KAVLKSYNAHSSEVNCVAACPGKDTIFL  198 (357)
T ss_dssp             -------CCCC-EEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTCSSCEE
T ss_pred             ccccceeEEEe-eccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEccCCCceee
Confidence            98765433221 11246899999999996 567889999999999999975 456778889999999999999874 789


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecccccCCccce
Q 024451          155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR  233 (267)
Q Consensus       155 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  233 (267)
                      +++.|++|++||+++++....+..   ......+.+++|+|++ .+|++|+.|+.|++||++..+.+..+    ..|...
T Consensus       199 s~~~dg~v~~wd~~~~~~~~~~~~---~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~----~~~~~~  271 (357)
T 4g56_B          199 SCGEDGRILLWDTRKPKPATRIDF---CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS----AVHSQN  271 (357)
T ss_dssp             EEETTSCEEECCTTSSSCBCBCCC---TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE----CCCSSC
T ss_pred             eeccCCceEEEECCCCceeeeeee---ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE----ecccee
Confidence            999999999999998775543211   2233468999999974 68899999999999999887766544    468889


Q ss_pred             EEEEEECCCC-CeEEEeECCCcEEEEecCce
Q 024451          234 ITCLGLSADG-SALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       234 v~~~~~~p~~-~~l~sgs~dg~i~~w~~~~~  263 (267)
                      |.+++|+|++ ++||+|+.|++|+||++..-
T Consensus       272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          272 ITGLAYSYHSSPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             EEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence            9999999987 68999999999999997543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-39  Score=264.71  Aligned_cols=248  Identities=21%  Similarity=0.280  Sum_probs=194.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++.|++|++||+.....    ........+|...|.+++|+|++ .+|++|+.|+++++||+.++..
T Consensus        21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~----~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~~~   95 (345)
T 3fm0_A           21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSW----ICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQDDF   95 (345)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEEEEETTEE----EEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC-E
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCCCcc----eeeeeeccccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccCCCe
Confidence            578999999999999999999999864210    00112346899999999999975 5899999999999999987642


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc--cceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  159 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  159 (267)
                      ....   ...+|...|.+++|+| +++++++++.|+.|++||++...  .....+.+|...|.+++|+|++++|++++.|
T Consensus        96 ~~~~---~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d  171 (345)
T 3fm0_A           96 ECVT---TLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD  171 (345)
T ss_dssp             EEEE---EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT
T ss_pred             EEEE---EccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC
Confidence            2211   1247999999999997 56789999999999999987533  2345677899999999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee------------eccccc
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL------------NLGSLQ  227 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~------------~~~~~~  227 (267)
                      ++|++||.++++.......   ..+...|.+++|+|++++|++|+.||.|++||........            ....+.
T Consensus       172 ~~i~~w~~~~~~~~~~~~~---~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T 3fm0_A          172 DTVKLYREEEDDWVCCATL---EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS  248 (345)
T ss_dssp             SCEEEEEEETTEEEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC
T ss_pred             CcEEEEEecCCCEEEEEEe---cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec
Confidence            9999999987653321111   2234579999999999999999999999999963321110            001112


Q ss_pred             CCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          228 NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       228 ~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      ..|...|.+++|+|++..|++++.|+.|++|+..
T Consensus       249 ~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~  282 (345)
T 3fm0_A          249 GFHSRTIYDIAWCQLTGALATACGDDAIRVFQED  282 (345)
T ss_dssp             SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred             CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence            3488899999999999999999999999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.2e-39  Score=259.72  Aligned_cols=240  Identities=22%  Similarity=0.369  Sum_probs=198.0

Q ss_pred             ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+|++ ++|++++.|++|++|++.......  ....+.+.+|...|.++.|+|++ .+|++|+.|++|++||+.++.
T Consensus        22 ~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~~~   98 (319)
T 3frx_A           22 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKF--GVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVATGE   98 (319)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEEEEEETTEE--EEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred             EEEccCCCccEEEEecCCccEEEecCCCCCccc--cccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCCCC
Confidence            57899865 899999999999999986422110  12345788999999999999975 589999999999999999987


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCC------CEEE
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG------NRFG  154 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~l~  154 (267)
                      ....+     .+|...|.++++++ ++.++++++.|+.|++||++  ......+.+|...|.++.|.|..      ..++
T Consensus        99 ~~~~~-----~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~  170 (319)
T 3frx_A           99 TYQRF-----VGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTII  170 (319)
T ss_dssp             EEEEE-----ECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECCC------CCEEE
T ss_pred             eeEEE-----ccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECC--CCeEEEEeccCCcEEEEEEccCCCCCCCccEEE
Confidence            76655     46899999999986 56789999999999999986  34567788999999999999854      4899


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceE
Q 024451          155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI  234 (267)
Q Consensus       155 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  234 (267)
                      +++.|+.|++||+++.+....+.     .+...|.+++|+|++++|++|+.||.|++||+...+.+..+.     +..+|
T Consensus       171 s~~~d~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~v  240 (319)
T 3frx_A          171 SAGNDKMVKAWNLNQFQIEADFI-----GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS-----AQDEV  240 (319)
T ss_dssp             EEETTSCEEEEETTTTEEEEEEC-----CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-----CCSCE
T ss_pred             EEeCCCEEEEEECCcchhheeec-----CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----CCCcE
Confidence            99999999999999876554432     234579999999999999999999999999998877665542     34679


Q ss_pred             EEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          235 TCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       235 ~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      .+++|+|++.+|++++. +.+++|++...
T Consensus       241 ~~~~~sp~~~~la~~~~-~~i~v~~~~~~  268 (319)
T 3frx_A          241 FSLAFSPNRYWLAAATA-TGIKVFSLDPQ  268 (319)
T ss_dssp             EEEEECSSSSEEEEEET-TEEEEEEETTE
T ss_pred             EEEEEcCCCCEEEEEcC-CCcEEEEeCcC
Confidence            99999999999998875 55999987653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.7e-39  Score=281.83  Aligned_cols=247  Identities=21%  Similarity=0.322  Sum_probs=199.1

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC----CeEEEEeCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDIT   77 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----~~v~iwd~~   77 (267)
                      +++|+|+|++|++|+.|++|++||+....     ......+.+|.+.|.+++|+|++ ++|++++.+    +.|++||..
T Consensus        64 ~~~~spdg~~lasg~~d~~v~lWd~~~~~-----~~~~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~~~~~v~~wd~~  137 (611)
T 1nr0_A           64 VAKTSPSGYYCASGDVHGNVRIWDTTQTT-----HILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTG  137 (611)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEESSSTT-----CCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTC
T ss_pred             EEEECCCCcEEEEEeCCCCEEEeECCCCc-----ceeeEeecccCCceEEEEECCCC-CEEEEEECCCCceeEEEEeeCC
Confidence            57899999999999999999999985321     12345678999999999999986 467777765    478888853


Q ss_pred             CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451           78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  157 (267)
                      +  ....     ..+|...|.+++|+|.....+++++.|+.|++||.+. .+....+.+|...|.+++|+|++++|++++
T Consensus       138 ~--~~~~-----l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-~~~~~~l~~H~~~V~~v~fspdg~~las~s  209 (611)
T 1nr0_A          138 T--SNGN-----LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGSLFASTG  209 (611)
T ss_dssp             C--BCBC-----CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             C--Ccce-----ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC-CeEeeeeccccCceEEEEECCCCCEEEEEE
Confidence            3  2222     2579999999999986555799999999999999864 445677889999999999999999999999


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeec--CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc-----------
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG-----------  224 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-----------  224 (267)
                      .|++|++||+.+++....+....  ...+...|.+++|+|++++|++++.|+.|++||+.+.+....+.           
T Consensus       210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~  289 (611)
T 1nr0_A          210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG  289 (611)
T ss_dssp             TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred             CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence            99999999998887655432100  01345679999999999999999999999999987665432211           


Q ss_pred             ----------------------------cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          225 ----------------------------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       225 ----------------------------~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                                                  .....|...|.+++|+|+|++|++++.|++|++|++..
T Consensus       290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST  355 (611)
T ss_dssp             EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence                                        11236889999999999999999999999999999753

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.1e-38  Score=259.05  Aligned_cols=241  Identities=20%  Similarity=0.314  Sum_probs=191.3

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++.+|++++.|++|++||+...       .....+.+|...|.+++|+|++ .+|++++.|++|++||+.....
T Consensus        81 ~~~~~~~~~~l~s~s~D~~v~lwd~~~~-------~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~  152 (343)
T 2xzm_R           81 DLALSQENCFAISSSWDKTLRLWDLRTG-------TTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECK  152 (343)
T ss_dssp             EEEECSSTTEEEEEETTSEEEEEETTSS-------CEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEE
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCC-------cEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCce
Confidence            5789999999999999999999998653       2456788999999999999976 5899999999999999975432


Q ss_pred             EEEeCCccccCCccceEEEEEeCCC---------CeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCE
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSN---------SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR  152 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  152 (267)
                      .. .  ....+|...+.++.++|..         ..++++++.|+.|++||..  ......+.+|...|.+++|+|++++
T Consensus       153 ~~-~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~  227 (343)
T 2xzm_R          153 FS-S--AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKY  227 (343)
T ss_dssp             EE-C--CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             ee-e--ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCCE
Confidence            22 1  1123688889999998754         2589999999999999954  3456677899999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee--eccc-----
Q 024451          153 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL--NLGS-----  225 (267)
Q Consensus       153 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~-----  225 (267)
                      |++++.|+.|++||++...........     ...|.+++|+|++.++++| .|+.+++||+.+.+...  .+..     
T Consensus       228 l~sgs~dg~v~iwd~~~~~~~~~~~~~-----~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~  301 (343)
T 2xzm_R          228 IATGGKDKKLLIWDILNLTYPQREFDA-----GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITK  301 (343)
T ss_dssp             EEEEETTCEEEEEESSCCSSCSEEEEC-----SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred             EEEEcCCCeEEEEECCCCcccceeecC-----CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchh
Confidence            999999999999999543322222211     1358999999999888755 68889999987654322  1110     


Q ss_pred             --ccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          226 --LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       226 --~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                        ....|...|.+++|+|+|++|++|+.||.|++|++.
T Consensus       302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred             hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence              112578889999999999999999999999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.5e-38  Score=258.25  Aligned_cols=243  Identities=20%  Similarity=0.360  Sum_probs=196.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++++|+|++.|++|++||.....       ....+..|...|.+++|+|++ .++++++.|+.+++|++.....
T Consensus        69 ~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~-------~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~~~~~~  140 (354)
T 2pbi_B           69 CMDWCKDKRRIVSSSQDGKVIVWDSFTTN-------KEHAVTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYPLTFDKN  140 (354)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCC-------EEEEEECSSSCCCEEEECTTS-SEEEEESTTSEEEEEECCCCTT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCC-------cceEEecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEEEecccc
Confidence            68899999999999999999999976421       344566788899999999976 5899999999999999864311


Q ss_pred             EEE-eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec--CCCEEEEeeC
Q 024451           82 TSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSD  158 (267)
Q Consensus        82 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~  158 (267)
                      ... .......+|...+.++.|++. +..+++++.|++|++||++. .+.+..+.+|...|.+++|+|  ++++|++++.
T Consensus       141 ~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~  218 (354)
T 2pbi_B          141 ENMAAKKKSVAMHTNYLSACSFTNS-DMQILTASGDGTCALWDVES-GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC  218 (354)
T ss_dssp             CCSGGGCEEEEECSSCEEEEEECSS-SSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred             ccccccceeeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEeCCC-CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence            000 000112368889999999864 56789999999999999975 446778889999999999987  4689999999


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      |++|++||+++++....+.     .+...|.+++|+|++..|++|+.|+.|++||++..+.+..+..  ..+...+.+++
T Consensus       219 Dg~v~~wd~~~~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~--~~~~~~~~~~~  291 (354)
T 2pbi_B          219 DKKAMVWDMRSGQCVQAFE-----THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK--ESIIFGASSVD  291 (354)
T ss_dssp             TSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--TTCCSCEEEEE
T ss_pred             CCeEEEEECCCCcEEEEec-----CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC--CCcccceeEEE
Confidence            9999999999988765542     2334799999999999999999999999999987665433321  22345789999


Q ss_pred             ECCCCCeEEEeECCCcEEEEecC
Q 024451          239 LSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       239 ~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      |+|++++|++|+.|+.|++|++.
T Consensus       292 ~s~~g~~l~~g~~d~~i~vwd~~  314 (354)
T 2pbi_B          292 FSLSGRLLFAGYNDYTINVWDVL  314 (354)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETT
T ss_pred             EeCCCCEEEEEECCCcEEEEECC
Confidence            99999999999999999999974

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8.1e-38  Score=252.11  Aligned_cols=239  Identities=27%  Similarity=0.485  Sum_probs=198.8

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++.|+++++|+....       .....+.+|...|.+++|+|++ .+|++++.|+.|++||++++..
T Consensus        28 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~   99 (312)
T 4ery_A           28 SVKFSPNGEWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSSGKC   99 (312)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEECCCCCEEEEeeCCCeEEEEeCCCc-------ccchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCCCcE
Confidence            5789999999999999999999998642       2456678999999999999975 6899999999999999998876


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...+     .+|...+.++.+++ +++++++++.|+.|++||++.. +....+..|...|.++.|+|+++++++++.|+.
T Consensus       100 ~~~~-----~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
T 4ery_A          100 LKTL-----KGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  172 (312)
T ss_dssp             EEEE-----ECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEE-----cCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence            6655     36888999999997 4578899999999999999753 456778889999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccc---eEEEEE
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG---RITCLG  238 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~  238 (267)
                      |++||+++++.+..+..    .....+..++|+|+++++++++.||.|++||+...+.+..+.    .|..   .+....
T Consensus       173 i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~  244 (312)
T 4ery_A          173 CRIWDTASGQCLKTLID----DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT----GHKNEKYCIFANF  244 (312)
T ss_dssp             EEEEETTTCCEEEEECC----SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC----SSCCSSSCCCEEE
T ss_pred             EEEEECCCCceeeEEec----cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE----ecCCceEEEEEEE
Confidence            99999998876554432    223468999999999999999999999999998877665442    2332   233333


Q ss_pred             ECCCCCeEEEeECCCcEEEEecCce
Q 024451          239 LSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       239 ~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      ..+++++|++|+.||.|++|++...
T Consensus       245 ~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          245 SVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             ECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCc
Confidence            4578999999999999999997543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-37  Score=250.98  Aligned_cols=240  Identities=23%  Similarity=0.433  Sum_probs=196.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++++|++++.|++|++||+...       .....+.+|...|.++.|+|++ .++++++.|++|++||++++..
T Consensus        70 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~  141 (312)
T 4ery_A           70 DVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKC  141 (312)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCE
T ss_pred             EEEEcCCCCEEEEECCCCEEEEEECCCC-------cEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEE
Confidence            5789999999999999999999998653       2556788999999999999975 5899999999999999998876


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...+     ..|...+.++.+++ +++++++++.|+.|++||++...........+...+..++|+|+++++++++.|+.
T Consensus       142 ~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  215 (312)
T 4ery_A          142 LKTL-----PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT  215 (312)
T ss_dssp             EEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE
T ss_pred             EEEe-----cCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe
Confidence            6655     35788899999986 56788999999999999997544333333456678999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      |++||+++++.+..+..+..  ....+......+++.++++|+.||.|++||+...+.+..+    ..|.+.|.+++|+|
T Consensus       216 i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~----~~h~~~v~~~~~~p  289 (312)
T 4ery_A          216 LKLWDYSKGKCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL----QGHTDVVISTACHP  289 (312)
T ss_dssp             EEEEETTTTEEEEEECSSCC--SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE----CCCSSCEEEEEECS
T ss_pred             EEEEECCCCcEEEEEEecCC--ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh----hccCCcEEEEeecC
Confidence            99999998877655432211  1112233333467889999999999999999887766554    46889999999999


Q ss_pred             CCCeEEEeE--CCCcEEEEecC
Q 024451          242 DGSALCTGS--WDTNLKIWAFG  261 (267)
Q Consensus       242 ~~~~l~sgs--~dg~i~~w~~~  261 (267)
                      ++++|++++  .|+.|++|+.+
T Consensus       290 ~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          290 TENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSSEEEEEECTTTCCEEEEECC
T ss_pred             cCCceEEEEccCCccEEEecCC
Confidence            999999997  69999999854

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.4e-37  Score=254.09  Aligned_cols=241  Identities=20%  Similarity=0.289  Sum_probs=187.6

Q ss_pred             ceee-----CC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEe
Q 024451            2 TCAF-----SP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD   75 (267)
Q Consensus         2 ~~~~-----~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd   75 (267)
                      +++|     ++ ++++|++|+.|++|++||+...............+.+|...|.+++|+|++ .++++|+.|++|++||
T Consensus        26 ~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd  104 (343)
T 2xzm_R           26 SIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWD  104 (343)
T ss_dssp             EEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-TEEEEEETTSEEEEEE
T ss_pred             heeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-CEEEEEcCCCcEEEEE
Confidence            4566     66 899999999999999999865321111122345688999999999999975 5899999999999999


Q ss_pred             CCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe---eccccceeEEEEecCC--
Q 024451           76 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---HGHEGDVNTVKFFPDG--  150 (267)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~--  150 (267)
                      ++++.....+     .+|...|.+++|+| +++++++++.|+.|++||+.. . .....   .+|...|.++.|+|++  
T Consensus       105 ~~~~~~~~~~-----~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~-~-~~~~~~~~~~~~~~v~~~~~~~~~~~  176 (343)
T 2xzm_R          105 LRTGTTYKRF-----VGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILG-E-CKFSSAEKENHSDWVSCVRYSPIMKS  176 (343)
T ss_dssp             TTSSCEEEEE-----ECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSS-C-EEEECCTTTSCSSCEEEEEECCCCCS
T ss_pred             CCCCcEEEEE-----cCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccC-C-ceeeeecccCCCceeeeeeecccccc
Confidence            9988766555     36899999999997 456789999999999999863 2 22222   2688899999999986  


Q ss_pred             --------CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeee
Q 024451          151 --------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN  222 (267)
Q Consensus       151 --------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~  222 (267)
                              .++++++.|+.|++||.. .+....+. .    +...|.+++|+|++++|++|+.||.|++||+........
T Consensus       177 ~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~-~----h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~  250 (343)
T 2xzm_R          177 ANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFK-A----HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR  250 (343)
T ss_dssp             CSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEE-C----CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred             ccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEc-C----ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence                    789999999999999954 33333322 2    234699999999999999999999999999844322211


Q ss_pred             cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          223 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       223 ~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .    ..+...|.+++|+|++++++++ .|+.|++|++..
T Consensus       251 ~----~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~  285 (343)
T 2xzm_R          251 E----FDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMT  285 (343)
T ss_dssp             E----EECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSS
T ss_pred             e----ecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCC
Confidence            1    1244579999999999988755 588899999754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.1e-37  Score=250.12  Aligned_cols=249  Identities=26%  Similarity=0.371  Sum_probs=195.4

Q ss_pred             ceeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+|+ +++|+|||.|++|++||+......  .....+.+.+|...|.++.|+|++ .+|++++.|+.|++|+.....
T Consensus        43 ~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~~~  119 (340)
T 4aow_A           43 QIATTPQFPDMILSASRDKTIIMWKLTRDETN--YGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTTGT  119 (340)
T ss_dssp             EEEECTTCTTEEEEEETTSCEEEEEECCSSSC--SEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred             EEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc--cceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecccc
Confidence            6789997 689999999999999998753211  122456788999999999999975 589999999999999987653


Q ss_pred             eEEEeCC--------------------------------------ccccCCccceEEEEEeCCC-CeEEEEecCCCeEEE
Q 024451           81 RTSVFGG--------------------------------------EFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARL  121 (267)
Q Consensus        81 ~~~~~~~--------------------------------------~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~i  121 (267)
                      .......                                      ....+|...+..+++.+.. ..++++++.|+.|++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i  199 (340)
T 4aow_A          120 TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV  199 (340)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred             eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE
Confidence            3221100                                      0123577778888887543 456789999999999


Q ss_pred             EeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451          122 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF  201 (267)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  201 (267)
                      ||++. .+....+.+|.+.|.+++|+|++++|++++.|+.|++||+++.+.+..+..      ...+.+++|+|++.++ 
T Consensus       200 ~d~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~~-  271 (340)
T 4aow_A          200 WNLAN-CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG------GDIINALCFSPNRYWL-  271 (340)
T ss_dssp             EETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC------SSCEEEEEECSSSSEE-
T ss_pred             EECCC-CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC------CceEEeeecCCCCcee-
Confidence            99875 446777889999999999999999999999999999999998877654432      1358999999987655 


Q ss_pred             EEEeCCeEEEEeCCccceeeeccc-----ccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          202 AGYSNGDCYVWDTLLAKVVLNLGS-----LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       202 ~g~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      +++.|+.|++||++....+..+..     ....|...|++++|+|+|++|++|+.||.|+||++.
T Consensus       272 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          272 CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            555799999999887655433321     123688899999999999999999999999999874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-37  Score=251.80  Aligned_cols=240  Identities=19%  Similarity=0.281  Sum_probs=182.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccc-cC-CeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      +++|+|+  +|++++.|++|++||+....     ......+ .+ |...|.+++|+|++ .+|++|+.|++|++||++..
T Consensus        19 ~~~~s~~--~las~~~D~~i~lw~~~~~~-----~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~   90 (330)
T 2hes_X           19 SFDFSQG--ILATGSTDRKIKLVSVKYDD-----FTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEES   90 (330)
T ss_dssp             EEEEETT--EEEEEESSSCEEEEECSSSC-----CEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC---
T ss_pred             eeccCCC--EEEEEcCCCEEEEEEecCCC-----eEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccC
Confidence            4678876  99999999999999986421     1223333 34 99999999999975 58999999999999998532


Q ss_pred             -------eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc---cceEEeeccccceeEEEEecC
Q 024451           80 -------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPD  149 (267)
Q Consensus        80 -------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~  149 (267)
                             .....+     .+|...|.+++|+| +++++++++.|+.|++||++...   ..+..+.+|...|.++.|+|+
T Consensus        91 ~~~~~~~~~~~~~-----~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~  164 (330)
T 2hes_X           91 ADRTFEMDLLAII-----EGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS  164 (330)
T ss_dssp             ----CCCEEEEEE-----C----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS
T ss_pred             cCccccceeEEEE-----cCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC
Confidence                   122222     47999999999997 46789999999999999985322   345667899999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCe--eeEEEEeecCCCCCCcEEEEEEccC--CCEEEEEEeCCeEEEEeCCccce-----e
Q 024451          150 GNRFGTGSDDGTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSIS--GRLLFAGYSNGDCYVWDTLLAKV-----V  220 (267)
Q Consensus       150 ~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~g~~dg~i~i~d~~~~~~-----~  220 (267)
                      +++|++++.|++|++||..++.  .+..+     ..+...|.+++|+|+  +..|++|+.|+.|++||+.....     .
T Consensus       165 ~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~  239 (330)
T 2hes_X          165 EALLASSSYDDTVRIWKDYDDDWECVAVL-----NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW  239 (330)
T ss_dssp             SSEEEEEETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCeeEEEEc-----cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence            9999999999999999987653  32222     223457999999998  67899999999999999764311     0


Q ss_pred             eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          221 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .....+...|...|.+++|+|++ +|++|+.||.|++|+..
T Consensus       240 ~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~  279 (330)
T 2hes_X          240 VCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV  279 (330)
T ss_dssp             EEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE
T ss_pred             EEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC
Confidence            01111223488999999999765 89999999999999863

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.8e-39  Score=266.41  Aligned_cols=246  Identities=20%  Similarity=0.357  Sum_probs=196.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++|+.|++|++||....       .....+.+|...|.+++|+|++ .+|++|+.|+.+++||+.+...
T Consensus        71 ~~~~sp~~~~l~s~s~D~~v~iWd~~~~-------~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~iw~~~~~~~  142 (380)
T 3iz6_a           71 SLDWTPEKNWIVSASQDGRLIVWNALTS-------QKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSACSIFNLSSQAD  142 (380)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEEETTTT-------EEEEEEECCCTTCCCCEECTTS-SEEEECCSSSCCEEEECCCCSS
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCC-------ccceEEecCCCCEEEEEECCCC-CEEEEeeCCCcEEEEECCCCcc
Confidence            6789999999999999999999998652       2456778999999999999976 5899999999999999975421


Q ss_pred             EE--EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe-----eccccceeEEEEec-CCCEE
Q 024451           82 TS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-----HGHEGDVNTVKFFP-DGNRF  153 (267)
Q Consensus        82 ~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~~-~~~~l  153 (267)
                      ..  ........+|...+.++.+.+.....+++++.|+.|++||++... .+..+     .+|...|.++.|+| ++++|
T Consensus       143 ~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  221 (380)
T 3iz6_a          143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ-RISIFGSEFPSGHTADVLSLSINSLNANMF  221 (380)
T ss_dssp             CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC-EEEEECCCSSSSCCSCEEEEEECSSSCCEE
T ss_pred             ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc-EEEEeecccCCCCccCeEEEEeecCCCCEE
Confidence            10  000122357889999999988766778999999999999997543 34444     57889999999987 78999


Q ss_pred             EEeeCCCcEEEEeCCCC-eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc---CC
Q 024451          154 GTGSDDGTCRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ---NS  229 (267)
Q Consensus       154 ~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~---~~  229 (267)
                      ++|+.|++|++||++.. +....+.     .+...|.+++|+|++++|++|+.||.|++||++.++.+..+....   ..
T Consensus       222 ~sgs~D~~v~~wd~~~~~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~  296 (380)
T 3iz6_a          222 ISGSCDTTVRLWDLRITSRAVRTYH-----GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN  296 (380)
T ss_dssp             EEEETTSCEEEEETTTTCCCCEEEC-----CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred             EEEECCCeEEEEECCCCCcceEEEC-----CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence            99999999999999854 3333332     233468999999999999999999999999998876654432111   12


Q ss_pred             ccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          230 HEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      +...|.+++|+|+|++|++|+.||.|++|+..
T Consensus       297 ~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          297 ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             SSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred             ccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence            33458999999999999999999999999963

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.4e-37  Score=254.77  Aligned_cols=244  Identities=24%  Similarity=0.400  Sum_probs=188.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccccc------------------CCeeeEEEEEEecCCCeeEE
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS------------------GHKGYVSCCQYVPDEDTHLI   63 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~------------------~h~~~v~~~~~~~~~~~~l~   63 (267)
                      +++|+|+|++|++++ |+++++|++....       ....+.                  .+...|.+++|+|++ .+|+
T Consensus        69 ~v~fspdg~~la~g~-~~~v~i~~~~~g~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~  139 (393)
T 1erj_A           69 CVKFSNDGEYLATGC-NKTTQVYRVSDGS-------LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLA  139 (393)
T ss_dssp             EEEECTTSSEEEEEC-BSCEEEEETTTCC-------EEEEECC-----------------CCCCBEEEEEECTTS-SEEE
T ss_pred             EEEECCCCCEEEEEc-CCcEEEEEecCCC-------EEEEecCccccccccccccccccCCCceeEEEEEECCCC-CEEE
Confidence            688999999999976 7899999986432       111222                  233459999999976 5899


Q ss_pred             EeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeE
Q 024451           64 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT  143 (267)
Q Consensus        64 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~  143 (267)
                      +|+.|++|++||++++.....+     .+|...|.+++|++. +..+++++.|+.|++||++... ....+ .+...+.+
T Consensus       140 s~~~d~~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~p~-~~~l~s~s~d~~v~iwd~~~~~-~~~~~-~~~~~v~~  211 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKIVMIL-----QGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQ-CSLTL-SIEDGVTT  211 (393)
T ss_dssp             EEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTE-EEEEE-ECSSCEEE
T ss_pred             EEcCCCeEEEEECCCCcEEEEE-----ccCCCCEEEEEEcCC-CCEEEEecCCCcEEEEECCCCe-eEEEE-EcCCCcEE
Confidence            9999999999999988766655     468999999999974 5678999999999999997543 33334 35678999


Q ss_pred             EEEec-CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeec--CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee
Q 024451          144 VKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       144 ~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  220 (267)
                      ++|+| +++++++++.|+.|++||+++++.+..+....  ...+...|.+++|+|++++|++|+.||.|++||+......
T Consensus       212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~  291 (393)
T 1erj_A          212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK  291 (393)
T ss_dssp             EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCc
Confidence            99999 89999999999999999999887655442111  1234567999999999999999999999999998654321


Q ss_pred             ee--------cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          221 LN--------LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       221 ~~--------~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ..        .......|...|.+++|+|++++|++|+.||.|++|+...
T Consensus       292 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~  341 (393)
T 1erj_A          292 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS  341 (393)
T ss_dssp             ---------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             ccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            10        0001136888999999999999999999999999999753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.4e-37  Score=270.03  Aligned_cols=238  Identities=18%  Similarity=0.269  Sum_probs=193.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++ ++++++|++..+.       ....+.+|...|++++|+|++ .+|++|+.|++|+|||+.++..
T Consensus        23 ~~~~spdg~~l~~~~-~~~v~l~~~~~~~-------~~~~~~~h~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~~~~   93 (611)
T 1nr0_A           23 VLGNTPAGDKIQYCN-GTSVYTVPVGSLT-------DTEIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTH   93 (611)
T ss_dssp             CCEECTTSSEEEEEE-TTEEEEEETTCSS-------CCEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTC
T ss_pred             EEeeCCCCCEEEeCC-CCEEEEecCCCcc-------cCeEecCCCCceEEEEECCCC-cEEEEEeCCCCEEEeECCCCcc
Confidence            578999999999987 5699999986422       456788999999999999976 6899999999999999975432


Q ss_pred             --EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC----CeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEE
Q 024451           82 --TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFG  154 (267)
Q Consensus        82 --~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~  154 (267)
                        ...+     .+|...|.+++|+|. ++.+++++.+    +.|++||..   .....+.+|...|.+++|+|+++ .|+
T Consensus        94 ~~~~~~-----~~~~~~v~~v~fs~d-g~~l~~~~~~~~~~~~v~~wd~~---~~~~~l~gh~~~v~~v~f~p~~~~~l~  164 (611)
T 1nr0_A           94 ILKTTI-----PVFSGPVKDISWDSE-SKRIAAVGEGRERFGHVFLFDTG---TSNGNLTGQARAMNSVDFKPSRPFRII  164 (611)
T ss_dssp             CEEEEE-----ECSSSCEEEEEECTT-SCEEEEEECCSSCSEEEEETTTC---CBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred             eeeEee-----cccCCceEEEEECCC-CCEEEEEECCCCceeEEEEeeCC---CCcceecCCCCCceEEEECCCCCeEEE
Confidence              2222     468889999999975 5566776654    478999853   24556789999999999999987 599


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccc---ccCCcc
Q 024451          155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS---LQNSHE  231 (267)
Q Consensus       155 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---~~~~~~  231 (267)
                      +++.|++|++||..+++....+.     .+...|.+++|+|++++|++|+.|+.|++||...++....+..   ....|.
T Consensus       165 s~s~D~~v~lwd~~~~~~~~~l~-----~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~  239 (611)
T 1nr0_A          165 SGSDDNTVAIFEGPPFKFKSTFG-----EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS  239 (611)
T ss_dssp             EEETTSCEEEEETTTBEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred             EEeCCCeEEEEECCCCeEeeeec-----cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccC
Confidence            99999999999998876554432     2345799999999999999999999999999887765544311   012699


Q ss_pred             ceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          232 GRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       232 ~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +.|.+++|+|+|++|++|+.|++|++|++..
T Consensus       240 ~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          240 GSVFGLTWSPDGTKIASASADKTIKIWNVAT  270 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence            9999999999999999999999999999754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.2e-37  Score=275.00  Aligned_cols=243  Identities=27%  Similarity=0.400  Sum_probs=195.3

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++.|++|++||+...       ...+.+.+|...|.+++|+|++ .+|++++.|++|++||......
T Consensus       435 ~v~~s~~g~~l~sgs~Dg~v~vwd~~~~-------~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~  506 (694)
T 3dm0_A          435 DVVLSSDGQFALSGSWDGELRLWDLAAG-------VSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECK  506 (694)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCC-------cceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcc
Confidence            5789999999999999999999998652       2456788999999999999976 5799999999999999876544


Q ss_pred             EEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ....  ....+|...|.++++++.. ...+++++.|+.|++||++. .+....+.+|.+.|.+++|+|+++++++++.|+
T Consensus       507 ~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg  583 (694)
T 3dm0_A          507 YTIS--EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN-CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG  583 (694)
T ss_dssp             EEEC--SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeec--cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            3332  1224688899999999754 35789999999999999974 445677889999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc-------------
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ-------------  227 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-------------  227 (267)
                      +|++||+++++.+..+.      ....+.+++|+|++.+++++. ++.|++||+...+.+..+....             
T Consensus       584 ~i~iwd~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  656 (694)
T 3dm0_A          584 VVLLWDLAEGKKLYSLE------ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPA  656 (694)
T ss_dssp             BCEEEETTTTEEEECCB------CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC------------
T ss_pred             eEEEEECCCCceEEEec------CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccc
Confidence            99999999887653321      123689999999998887764 6679999998776554332100             


Q ss_pred             --CCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          228 --NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       228 --~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                        ..+...+.+++|+|+|++|++|+.||+|++|+++.
T Consensus       657 ~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          657 ATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             ----CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence              01112478999999999999999999999999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-37  Score=254.42  Aligned_cols=249  Identities=19%  Similarity=0.268  Sum_probs=199.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+|++++|++++.|++|++||+....     ......+.+|...|++++|+|+ ++.+|++++.|+.|++||+.++.
T Consensus        16 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   90 (379)
T 3jrp_A           16 DAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR   90 (379)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE
T ss_pred             EEEEcCCCCEEEEEECCCcEEEEecCCCc-----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc
Confidence            67899999999999999999999986321     2355678899999999999865 24689999999999999999875


Q ss_pred             --eEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcc-cceEEeeccccceeEEEEec--------
Q 024451           81 --RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFP--------  148 (267)
Q Consensus        81 --~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~--------  148 (267)
                        ....+     ..|...+.+++|++.. +.++++++.|+.|++||++... .....+.+|...|.++.|+|        
T Consensus        91 ~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  165 (379)
T 3jrp_A           91 WSQIAVH-----AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE  165 (379)
T ss_dssp             EEEEEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC------
T ss_pred             eeEeeee-----cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccc
Confidence              33332     3588899999999752 6789999999999999997542 23445678999999999999        


Q ss_pred             -----CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC---CCEEEEEEeCCeEEEEeCCcccee
Q 024451          149 -----DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---GRLLFAGYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       149 -----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~g~~dg~i~i~d~~~~~~~  220 (267)
                           +++++++++.|+.|++||+++++......... ..+...|.+++|+|+   +.+|++++.||.|++||+......
T Consensus       166 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~  244 (379)
T 3jrp_A          166 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP  244 (379)
T ss_dssp             ----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             ccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEE-ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence                 69999999999999999998765432221111 223457999999999   899999999999999998765321


Q ss_pred             ee-cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          221 LN-LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       221 ~~-~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .. .......|...|.+++|+|++++|++++.||.|++|++.
T Consensus       245 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          245 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            11 111123488899999999999999999999999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.4e-38  Score=266.67  Aligned_cols=247  Identities=19%  Similarity=0.240  Sum_probs=189.7

Q ss_pred             ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+| ++++|++|+.||+|++||+....     ......+.+|.+.|++++|+|.++.+|++|+.|++|++||++++.
T Consensus       124 ~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-----~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~  198 (435)
T 4e54_B          124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-----KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI  198 (435)
T ss_dssp             EEEECSSCTTCEEEEETTSCEEEECSSCCS-----CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred             EEEEeCCCCCEEEEEeCCCEEEEEECCCCC-----ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence            689999 56799999999999999986532     223445679999999999999766789999999999999998765


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEEEeeCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDD  159 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d  159 (267)
                      .......   ..+...+.++++++ +++++++|+.||.|++||++.  +.+..+.+|...|.+++|+|+++ ++++++.|
T Consensus       199 ~~~~~~~---~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d  272 (435)
T 4e54_B          199 LRVFASS---DTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVD  272 (435)
T ss_dssp             EEEEECC---SSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSS--CBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred             eeEEecc---CCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCc--ceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence            4333321   23445577888986 567899999999999999863  45667889999999999999876 78899999


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec----------------
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL----------------  223 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~----------------  223 (267)
                      +.|++||+++.+....+..  ...+...|.+++|+|++.+|++|+.||.|++||+...+....+                
T Consensus       273 ~~v~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (435)
T 4e54_B          273 QTVKIWDLRQVRGKASFLY--SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA  350 (435)
T ss_dssp             SBCCEEETTTCCSSSCCSB--CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred             ceeeEEecccccccceEEE--eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence            9999999987654332211  1234457999999999999999999999999997653211100                


Q ss_pred             -----------------------------------------ccccCCccceEEEE-EECCCCCeEEEeECCCcEEEEecC
Q 024451          224 -----------------------------------------GSLQNSHEGRITCL-GLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       224 -----------------------------------------~~~~~~~~~~v~~~-~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                                                               ..+...|...|.++ +|+|+|++||+|+ |+.|+||++.
T Consensus       351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred             EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence                                                     00012355566776 6999999999886 8899999874


Q ss_pred             c
Q 024451          262 G  262 (267)
Q Consensus       262 ~  262 (267)
                      .
T Consensus       430 ~  430 (435)
T 4e54_B          430 E  430 (435)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.8e-37  Score=267.54  Aligned_cols=229  Identities=28%  Similarity=0.528  Sum_probs=194.1

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++.|+++++|+...        .....+.+|...|.+++|+|++ ++|++++.|+.|++||... ..
T Consensus       349 ~~~~s~~g~~l~~~~~dg~v~~~~~~~--------~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~-~~  418 (577)
T 2ymu_A          349 GVAFSPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG-QL  418 (577)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTC--------CEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTC-CE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEcCCC--------CEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCC-CE
Confidence            578999999999999999999999542        2456778999999999999976 5899999999999999654 33


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...+     .+|...|.+++++| +++++++++.|+.|++||..  .+....+.+|...|.+++|+|+++++++++.|+.
T Consensus       419 ~~~~-----~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~  490 (577)
T 2ymu_A          419 LQTL-----TGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT  490 (577)
T ss_dssp             EEEE-----ECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             EEEe-----cCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence            3333     36888999999986 56788999999999999964  3467778899999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      |++||. +++.+..+..     +...|.+++|+|++++|++++.||.|++||. .++.+..+    ..|.+.|++++|+|
T Consensus       491 i~iw~~-~~~~~~~~~~-----h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~----~~h~~~v~~~~fs~  559 (577)
T 2ymu_A          491 VKLWNR-NGQLLQTLTG-----HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL----TGHSSSVWGVAFSP  559 (577)
T ss_dssp             EEEEET-TSCEEEEEEC-----CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE----ECCSSCEEEEEECT
T ss_pred             EEEEcC-CCCEEEEEeC-----CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE----cCCCCCEEEEEEcC
Confidence            999996 4555554432     2346999999999999999999999999995 44544433    47999999999999


Q ss_pred             CCCeEEEeECCCcEEEEe
Q 024451          242 DGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~  259 (267)
                      ||++|++++.|++|++|+
T Consensus       560 dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          560 DGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             TSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEeCCCEEEEeC
Confidence            999999999999999996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-38  Score=272.10  Aligned_cols=244  Identities=14%  Similarity=0.024  Sum_probs=181.1

Q ss_pred             CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-----CCeeEEEeeCCCeEEEEeCCCCe
Q 024451            6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-----EDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +|+++.+++++.|++|+||++....   ........+.+|.+.|.+++|+|+     +..+|++++.|++|++||+.++.
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~---~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~  246 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTST---LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA  246 (524)
T ss_dssp             ------------CEEEEEEEEETTT---CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred             chhhhhhccCCCCceEEEEEccCCC---CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence            4555667778899999999986422   111112345678899999999996     13589999999999999997653


Q ss_pred             eE---E-Ee--CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEE--EEecCC-C
Q 024451           81 RT---S-VF--GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV--KFFPDG-N  151 (267)
Q Consensus        81 ~~---~-~~--~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~  151 (267)
                      ..   . ..  ......+|...+.+++|+++  ..+++|+.||+|++||++....+...+.+|...|.++  .|+|++ .
T Consensus       247 ~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~  324 (524)
T 2j04_B          247 TDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT  324 (524)
T ss_dssp             SSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCC
T ss_pred             cccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCe
Confidence            21   0 00  00122468899999999864  3789999999999999975544556678999999999  567887 8


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCcc
Q 024451          152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE  231 (267)
Q Consensus       152 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~  231 (267)
                      +|++++.|++|+|||+++++....+..+..   ...+.+++|+|+++.+++++.|+.|++||++....+..+    ..|.
T Consensus       325 ~laS~S~D~tvklWD~~~~~~~~~~~~~~~---~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l----~gH~  397 (524)
T 2j04_B          325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFR---GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL----VSRE  397 (524)
T ss_dssp             EEEEEETTSEEEEECGGGHHHHCEEEEECS---CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE----EECS
T ss_pred             EEEEeccCCeEEEEECCCCCcccccccccc---cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee----ecCC
Confidence            999999999999999998766544433221   123678999999999999999999999999877654433    3589


Q ss_pred             ceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          232 GRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       232 ~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      +.|++++|+|+|++|++||.||+|++|++.
T Consensus       398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          398 TTITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             SCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             CceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence            999999999999999999999999999863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-36  Score=245.59  Aligned_cols=242  Identities=18%  Similarity=0.260  Sum_probs=200.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++.|+.|++||+...       .....+.+|...|.+++|+|++ .+|++++.|+.|++||+.++..
T Consensus        37 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~  108 (369)
T 3zwl_B           37 QVKYNKEGDLLFSCSKDSSASVWYSLNG-------ERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSNGQC  108 (369)
T ss_dssp             EEEECTTSCEEEEEESSSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCCE
T ss_pred             EEEEcCCCCEEEEEeCCCEEEEEeCCCc-------hhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE
Confidence            6789999999999999999999998652       2556788999999999999965 5899999999999999988754


Q ss_pred             EEEeCCcc----------------------------------------------------ccCCcc--ceEEEEEeCCCC
Q 024451           82 TSVFGGEF----------------------------------------------------QSGHTA--DVLSVSISGSNS  107 (267)
Q Consensus        82 ~~~~~~~~----------------------------------------------------~~~~~~--~i~~~~~~~~~~  107 (267)
                      ...+....                                                    ...|..  .+.++++++ ++
T Consensus       109 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  187 (369)
T 3zwl_B          109 VATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KG  187 (369)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GG
T ss_pred             EEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CC
Confidence            44331000                                                    001111  677777876 45


Q ss_pred             eEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCc
Q 024451          108 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH  187 (267)
Q Consensus       108 ~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  187 (267)
                      +.+++++.|+.|++||++........+..|...|.+++|+|++++|++++.|+.|++||+++++....+.      ....
T Consensus       188 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~  261 (369)
T 3zwl_B          188 KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE------TDCP  261 (369)
T ss_dssp             CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------CSSC
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec------CCCC
Confidence            6788999999999999986456677888899999999999999999999999999999999887765543      1246


Q ss_pred             EEEEEEccCCCEEEEEEeCC--------------eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451          188 VTSIAFSISGRLLFAGYSNG--------------DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  253 (267)
Q Consensus       188 v~~~~~s~~~~~l~~g~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg  253 (267)
                      +..++|+|+++++++++.++              .+++||....+.+..+    ..|...|.+++|+|++++|++++.||
T Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~dg  337 (369)
T 3zwl_B          262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV----QGHFGPLNTVAISPQGTSYASGGEDG  337 (369)
T ss_dssp             EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE----ECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe----ecccCcEEEEEECCCCCEEEEEcCCC
Confidence            89999999999999999888              8999999887766554    46889999999999999999999999


Q ss_pred             cEEEEecCc
Q 024451          254 NLKIWAFGG  262 (267)
Q Consensus       254 ~i~~w~~~~  262 (267)
                      .|++|++..
T Consensus       338 ~v~iw~~~~  346 (369)
T 3zwl_B          338 FIRLHHFEK  346 (369)
T ss_dssp             EEEEEEECH
T ss_pred             eEEEEECcc
Confidence            999999754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.8e-36  Score=246.18  Aligned_cols=249  Identities=16%  Similarity=0.242  Sum_probs=194.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+|++++|++++.||+|++||+....   ........+.+|...|.+++|+|. ++.+|++++.|++|++||++++.
T Consensus        16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~   92 (351)
T 3f3f_A           16 DVVYDFYGRHVATCSSDQHIKVFKLDKDT---SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ   92 (351)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEEECSSS---CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred             EEEEcCCCCEEEEeeCCCeEEEEECCCCC---CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence            68899999999999999999999987532   122345667899999999999985 24689999999999999998762


Q ss_pred             ---------eEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcccceEEe-------------ecc
Q 024451           81 ---------RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTF-------------HGH  137 (267)
Q Consensus        81 ---------~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~  137 (267)
                               ....+     .+|...+.+++|++.. +.++++++.|+.|++||++.... ...+             ..|
T Consensus        93 ~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~  166 (351)
T 3f3f_A           93 EECSGRRWNKLCTL-----NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD-LRSWTLTSEMKVLSIPPANH  166 (351)
T ss_dssp             CTTSSCSEEEEEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC-TTCCEEEEEEESCSCCCSSC
T ss_pred             ccccccCcceeeee-----cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH-hccccccccccccccccCCc
Confidence                     23332     3688899999999752 67889999999999999875432 1111             257


Q ss_pred             ccceeEEEEecC---CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC----CEEEEEEeCCeEE
Q 024451          138 EGDVNTVKFFPD---GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG----RLLFAGYSNGDCY  210 (267)
Q Consensus       138 ~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~g~~dg~i~  210 (267)
                      ...+.++.|+|+   ++++++++.|+.+.+|+...++..... .  ...+...|.+++|+|++    ++|++|+.||.|+
T Consensus       167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA-K--LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE-E--CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee-e--cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence            788999999997   899999999999988887766542221 1  12344579999999998    8999999999999


Q ss_pred             EEeCCcccee------------------------------------------eecccccCCccceEEEEEECCCCCeEEE
Q 024451          211 VWDTLLAKVV------------------------------------------LNLGSLQNSHEGRITCLGLSADGSALCT  248 (267)
Q Consensus       211 i~d~~~~~~~------------------------------------------~~~~~~~~~~~~~v~~~~~~p~~~~l~s  248 (267)
                      +||+......                                          .........|.+.|.+++|+|++++|++
T Consensus       244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  323 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS  323 (351)
T ss_dssp             EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred             EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence            9998653110                                          0011112468899999999999999999


Q ss_pred             eECCCcEEEEecCc
Q 024451          249 GSWDTNLKIWAFGG  262 (267)
Q Consensus       249 gs~dg~i~~w~~~~  262 (267)
                      |+.||.|++|++..
T Consensus       324 ~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          324 AGDDGKVRLWKATY  337 (351)
T ss_dssp             EETTSCEEEEEECT
T ss_pred             ecCCCcEEEEecCc
Confidence            99999999999863

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.1e-38  Score=258.55  Aligned_cols=245  Identities=12%  Similarity=0.142  Sum_probs=186.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-   80 (267)
                      +++|+|+|++|++++.|++|++||+....     ......+.+|...|.+++|+|++ .+|++++.|++|++||+.++. 
T Consensus        16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~~   89 (377)
T 3dwl_C           16 EHAFNSQRTEFVTTTATNQVELYEQDGNG-----WKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDGT   89 (377)
T ss_dssp             CCEECSSSSEEECCCSSSCBCEEEEETTE-----EEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC------C
T ss_pred             EEEECCCCCEEEEecCCCEEEEEEccCCc-----eEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCCc
Confidence            68899999999999999999999987421     12456788999999999999975 589999999999999998765 


Q ss_pred             --eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc--ceEEeec-cccceeEEEEecCCCEEEE
Q 024451           81 --RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHG-HEGDVNTVKFFPDGNRFGT  155 (267)
Q Consensus        81 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~  155 (267)
                        ....+     .+|...+.+++|++ +++++++++.|+.|++||++....  ....+.+ |...|.+++|+|+++++++
T Consensus        90 ~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~  163 (377)
T 3dwl_C           90 WKQTLVL-----LRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA  163 (377)
T ss_dssp             CCCEEEC-----CCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred             eeeeeEe-----cccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence              22222     46889999999997 566789999999999999875432  3566666 9999999999999999999


Q ss_pred             eeCCCcEEEEeCCCCe--------------eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee
Q 024451          156 GSDDGTCRLFDIRTGH--------------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL  221 (267)
Q Consensus       156 ~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~  221 (267)
                      ++.|+.|++||++..+              .........  .+...|.+++|+|++++|++|+.||.|++||+...+...
T Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  241 (377)
T 3dwl_C          164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP  241 (377)
T ss_dssp             EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred             EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence            9999999999986322              011111111  345579999999999999999999999999988776521


Q ss_pred             ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      ........|..+|.+++|+|++++|++|+.|+.+ +|+..
T Consensus       242 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          242 RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            1111224688899999999999999999876666 66543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.6e-36  Score=248.49  Aligned_cols=256  Identities=21%  Similarity=0.345  Sum_probs=198.4

Q ss_pred             ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcc-------cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEE
Q 024451            2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPV-------SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL   73 (267)
Q Consensus         2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~i   73 (267)
                      +++|+| ++++|++++.||+|++||+....... ....       .....+|...|.+++|+|++..++++++.|+.|++
T Consensus        48 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  126 (408)
T 4a11_B           48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS-YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKV  126 (408)
T ss_dssp             EEEECTTTCCEEEEEETTSCEEEEECCCCSSSS-CEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEE
T ss_pred             EEEEecCCCCEEEEEcCCCeEEEEECCCCcccc-eEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEE
Confidence            688999 99999999999999999987643111 0000       11124699999999999966678999999999999


Q ss_pred             EeCCCCeeEEEeCCccccCCccceEEEEEeCC--CCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC
Q 024451           74 WDITTGLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN  151 (267)
Q Consensus        74 wd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  151 (267)
                      ||+.++.....+.      +...+.++.+.+.  +..++++++.|+.|++||++.. .....+.+|...|.+++|+|+++
T Consensus       127 wd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~  199 (408)
T 4a11_B          127 WDTNTLQTADVFN------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-SCSHILQGHRQEILAVSWSPRYD  199 (408)
T ss_dssp             EETTTTEEEEEEE------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-CCCEEECCCCSCEEEEEECSSCT
T ss_pred             eeCCCCccceecc------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-ceeeeecCCCCcEEEEEECCCCC
Confidence            9999987666552      5567888888764  3348999999999999999754 45677888999999999999988


Q ss_pred             -EEEEeeCCCcEEEEeCCCCeeeEEEEeec-----------CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce
Q 024451          152 -RFGTGSDDGTCRLFDIRTGHQLQVYYQQH-----------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  219 (267)
Q Consensus       152 -~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~  219 (267)
                       .+++++.|+.|++||+++++........+           ...+...|.+++|+|++++|++++.||.|++||+...+.
T Consensus       200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  279 (408)
T 4a11_B          200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN  279 (408)
T ss_dssp             TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred             cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence             58999999999999998765322221100           022445799999999999999999999999999876543


Q ss_pred             eeec-------------------------------------------ccccCCccceEEEEEECCCCCeEEEeECCCcEE
Q 024451          220 VLNL-------------------------------------------GSLQNSHEGRITCLGLSADGSALCTGSWDTNLK  256 (267)
Q Consensus       220 ~~~~-------------------------------------------~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~  256 (267)
                      ....                                           ......|.+.|.+++|+|++++|++|+.||.|+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  359 (408)
T 4a11_B          280 TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL  359 (408)
T ss_dssp             CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEE
Confidence            2110                                           001135888999999999999999999999999


Q ss_pred             EEecCceEe
Q 024451          257 IWAFGGYRR  265 (267)
Q Consensus       257 ~w~~~~~~~  265 (267)
                      +|++.....
T Consensus       360 iw~~~~~~~  368 (408)
T 4a11_B          360 AWVPSLYEP  368 (408)
T ss_dssp             EEEECC---
T ss_pred             EEeCCCCCc
Confidence            999876543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.3e-37  Score=256.27  Aligned_cols=241  Identities=19%  Similarity=0.297  Sum_probs=195.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++.|+.+++||.....       ....+..| ..+....|+|++ .+|++++.|+.|++||+.++..
T Consensus        61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~-------~~~~~~~~-~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~  131 (420)
T 3vl1_A           61 GNTFEKVGSHLYKARLDGHDFLFNTIIRD-------GSKMLKRA-DYTAVDTAKLQM-RRFILGTTEGDIKVLDSNFNLQ  131 (420)
T ss_dssp             TCEEEEEETTEEEEEETTEEEEEECCSEE-------TTTTSCSC-CEEEEEEECSSS-CEEEEEETTSCEEEECTTSCEE
T ss_pred             ceeeeecCCeEEEEEcCCcEEEEEecccc-------eeeEEecC-CceEEEEEecCC-CEEEEEECCCCEEEEeCCCcce
Confidence            47899999999999999999999986522       23344555 344445666754 6899999999999999998876


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...+     .+|...|.+++|++ +++++++++.|+.|++||++.. +....+.+|...|.+++|+|++++|++++.|++
T Consensus       132 ~~~~-----~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~  204 (420)
T 3vl1_A          132 REID-----QAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDG-SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGT  204 (420)
T ss_dssp             EEET-----TSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC-CCCEEEECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             eeec-----ccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence            5543     46899999999997 4668899999999999999754 456778899999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEE---------------------EEEEccCCCEEEEEEeCCeEEEEeCCcccee
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVT---------------------SIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~---------------------~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  220 (267)
                      |++||+++++....+....  .....+.                     +++|+|+++++++|+.||.|++||+...+.+
T Consensus       205 v~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~  282 (420)
T 3vl1_A          205 IRLWECGTGTTIHTFNRKE--NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT  282 (420)
T ss_dssp             EEEEETTTTEEEEEECBTT--BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEeECCCCceeEEeecCC--CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            9999999988766553321  1222344                     4455789999999999999999999887765


Q ss_pred             eecccccCCccceEEEEEECCCCC-eEEEeECCCcEEEEecCce
Q 024451          221 LNLGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       221 ~~~~~~~~~~~~~v~~~~~~p~~~-~l~sgs~dg~i~~w~~~~~  263 (267)
                      ...   ...|...|.+++|+|+++ +|++|+.||.|++|++...
T Consensus       283 ~~~---~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  323 (420)
T 3vl1_A          283 IQL---PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP  323 (420)
T ss_dssp             EEE---CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             EEc---ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence            544   246888999999999999 9999999999999998653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=9.4e-36  Score=239.91  Aligned_cols=243  Identities=23%  Similarity=0.364  Sum_probs=191.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|++++ +|++ |.|++|++||+....     ......+.+|...|++++|+|++ +++++|+.|++|++||+++++.
T Consensus        30 ~l~WS~~~-~lAv-g~D~tV~iWd~~tg~-----~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           30 LVDWSSGN-VLAV-ALDNSVYLWSASSGD-----ILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             CEEECTTS-EEEE-EETTEEEEEETTTCC-----EEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE
T ss_pred             EEEECCCC-EEEE-EeCCEEEEEECCCCC-----EEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCcee
Confidence            36899876 5665 469999999986522     11222356788999999999976 5899999999999999999887


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...+     .+|...+.++...   ..++++++.++.+++|+..........+.+|...+..+.+.++++++++++.|++
T Consensus       102 ~~~~-----~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  173 (318)
T 4ggc_A          102 LRNM-----TSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL  173 (318)
T ss_dssp             EEEE-----ECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEe-----cCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc
Confidence            7665     3688888877665   3578999999999999987666667788899999999999999999999999999


Q ss_pred             EEEEeCCCCeeeE----EEEe---------ecC------------------------------CCCCCcEEEEEEccCCC
Q 024451          162 CRLFDIRTGHQLQ----VYYQ---------QHG------------------------------ENEIPHVTSIAFSISGR  198 (267)
Q Consensus       162 i~iwd~~~~~~~~----~~~~---------~~~------------------------------~~~~~~v~~~~~s~~~~  198 (267)
                      |++||+++++...    ....         ...                              ......+..++|++++.
T Consensus       174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~  253 (318)
T 4ggc_A          174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK  253 (318)
T ss_dssp             EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTT
T ss_pred             eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccccc
Confidence            9999998653210    0000         000                              00123467788999988


Q ss_pred             EEEEEE--eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          199 LLFAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       199 ~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      .+++++  .|+.|++||+.+++.+..+    ..|.+.|++++|+|+|++|||||.||+|+||++..+.
T Consensus       254 ~~~~~sg~~d~~i~iwd~~~~~~~~~l----~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          254 ELISGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEEEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             ceEEEEEcCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            887765  7899999999888877655    4699999999999999999999999999999987653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.5e-37  Score=257.64  Aligned_cols=255  Identities=22%  Similarity=0.383  Sum_probs=192.3

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCC----CCCCCcccccccCCe------------eeEEEEEEecCCC-eeEEE
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHK------------GYVSCCQYVPDED-THLIT   64 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~----~~~~~~~~~~~~~h~------------~~v~~~~~~~~~~-~~l~s   64 (267)
                      +++|+|+|++|++|+.||.|++|++.....    ......+...+.+|.            ..|.+++|+|++. .++++
T Consensus        33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s  112 (447)
T 3dw8_B           33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLL  112 (447)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEE
Confidence            688999999999999999999999875331    112233466788998            8899999999753 57999


Q ss_pred             eeCCCeEEEEeCCCCeeEEE-e----------------------------------CCccccCCccceEEEEEeCCCCeE
Q 024451           65 SSGDQTCVLWDITTGLRTSV-F----------------------------------GGEFQSGHTADVLSVSISGSNSRM  109 (267)
Q Consensus        65 ~~~d~~v~iwd~~~~~~~~~-~----------------------------------~~~~~~~~~~~i~~~~~~~~~~~~  109 (267)
                      ++.|++|++||+.++..... +                                  ......+|...|.+++|++ ++++
T Consensus       113 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~  191 (447)
T 3dw8_B          113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYET  191 (447)
T ss_dssp             EECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSE
T ss_pred             eCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCE
Confidence            99999999999876432110 0                                  0011357999999999997 4667


Q ss_pred             EEEecCCCeEEEEeCCCcccceE-------EeeccccceeEEEEecCC-CEEEEeeCCCcEEEEeCCCCee----eEEEE
Q 024451          110 FVSGSCDSTARLWDTRVASRAVR-------TFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQ----LQVYY  177 (267)
Q Consensus       110 ~~s~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~  177 (267)
                      ++++ .|+.|++||++.......       .+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.    ...+.
T Consensus       192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  270 (447)
T 3dw8_B          192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE  270 (447)
T ss_dssp             EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC
T ss_pred             EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec
Confidence            8888 799999999974333333       255899999999999998 9999999999999999998765    33332


Q ss_pred             eecCCC-------CCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc-cceeeecccccCCccc---------------eE
Q 024451          178 QQHGEN-------EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEG---------------RI  234 (267)
Q Consensus       178 ~~~~~~-------~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~---------------~v  234 (267)
                      .+....       +...|.+++|+|++++|++++. +.|++||+.. .+.+..+    ..|..               .+
T Consensus       271 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~i~~~  345 (447)
T 3dw8_B          271 EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY----QVHEYLRSKLCSLYENDCIFDK  345 (447)
T ss_dssp             CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE----ESCGGGTTTHHHHHHTSGGGCC
T ss_pred             cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee----eccccccccccccccccccccc
Confidence            211100       0126999999999999999988 9999999876 4444332    22332               13


Q ss_pred             EEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          235 TCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       235 ~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      ..++|+|++++|++|+.||.|++|++..-
T Consensus       346 ~~~~~s~~~~~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          346 FECCWNGSDSVVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             CCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred             eEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence            34999999999999999999999998543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-37  Score=255.56  Aligned_cols=250  Identities=13%  Similarity=0.262  Sum_probs=203.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-   80 (267)
                      +++|+|++++|++++.|+.|++|++......   ......+.+|...|.+++|+|++..+|++++.|+.|++||+.++. 
T Consensus        72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  148 (416)
T 2pm9_A           72 DLDWSHNNKIIAGALDNGSLELYSTNEANNA---INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTE  148 (416)
T ss_dssp             EEEECSSSSCEEEEESSSCEEEECCSSTTSC---CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSS
T ss_pred             EEEECCCCCeEEEEccCCeEEEeeccccccc---ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcc
Confidence            6789999999999999999999998752211   125567889999999999999856789999999999999998765 


Q ss_pred             -----eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc------ccceeEEEEecC
Q 024451           81 -----RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------EGDVNTVKFFPD  149 (267)
Q Consensus        81 -----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~  149 (267)
                           .....  .....|...+.+++|++....++++++.|+.|++||++.. .....+..|      ...|.+++|+|+
T Consensus       149 ~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~  225 (416)
T 2pm9_A          149 SPSNYTPLTP--GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPK  225 (416)
T ss_dssp             CTTTCCCBCC--CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSS
T ss_pred             cccccccccc--ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-CcceEEeccccccccCCceEEEEECCC
Confidence                 22211  1224688899999999865788999999999999999753 345555555      788999999998


Q ss_pred             C-CEEEEeeCCC---cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEEEeCCeEEEEeCCccceeeecc
Q 024451          150 G-NRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLG  224 (267)
Q Consensus       150 ~-~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~  224 (267)
                      + .++++++.|+   .|++||+++++.......   ..+...+.+++|+| ++.+|++++.||.|++||+...+.+..+ 
T Consensus       226 ~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~-  301 (416)
T 2pm9_A          226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLN---QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF-  301 (416)
T ss_dssp             CTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC---SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE-
T ss_pred             CCCEEEEEECCCCCceEEEEeCCCCCCCcEEee---cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee-
Confidence            7 6899999999   999999988632211111   02345799999999 8999999999999999999887766554 


Q ss_pred             cccCCccceEEEEEECCCC-CeEEEeECCCcEEEEecCceE
Q 024451          225 SLQNSHEGRITCLGLSADG-SALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       225 ~~~~~~~~~v~~~~~~p~~-~~l~sgs~dg~i~~w~~~~~~  264 (267)
                         ..|...|.+++|+|++ ++|++++.||.|++|++....
T Consensus       302 ---~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          302 ---PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             ---ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             ---cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence               4688899999999999 899999999999999986543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.2e-35  Score=236.67  Aligned_cols=240  Identities=22%  Similarity=0.360  Sum_probs=197.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccc--ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM--LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      +++|+|++++|++++ |+.+++|++......    .....  ..+|...|.++.|+|++ .++++++.|+.|++||+.++
T Consensus        56 ~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~  129 (337)
T 1gxr_A           56 AVTISNPTRHVYTGG-KGCVKVWDISHPGNK----SPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAP  129 (337)
T ss_dssp             EEEECSSSSEEEEEC-BSEEEEEETTSTTCC----SCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC
T ss_pred             EEEEecCCcEEEEcC-CCeEEEEECCCCCce----eeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCC
Confidence            678999999999999 999999998753211    11222  23799999999999975 58999999999999999887


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  159 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  159 (267)
                      ......   ....|...+.++++++ +++++++++.|+.|++||++. .+....+.+|...+.+++|+|+++++++++.|
T Consensus       130 ~~~~~~---~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          130 TPRIKA---ELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             --EEEE---EEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             Ccceee---ecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCC-CceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence            532221   1135788899999997 567889999999999999975 45677788899999999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      +.|++||+++++....+.      ....+.+++|+|+++++++++.+|.|++||....+... .    ..|...|.+++|
T Consensus       205 g~i~~~d~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~----~~~~~~v~~~~~  273 (337)
T 1gxr_A          205 NTVRSWDLREGRQLQQHD------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L----HLHESCVLSLKF  273 (337)
T ss_dssp             SEEEEEETTTTEEEEEEE------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-E----CCCSSCEEEEEE
T ss_pred             CcEEEEECCCCceEeeec------CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-E----cCCccceeEEEE
Confidence            999999999887655432      12368999999999999999999999999988765432 2    468889999999


Q ss_pred             CCCCCeEEEeECCCcEEEEecCce
Q 024451          240 SADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      +|++++|++++.||.|++|++...
T Consensus       274 ~~~~~~l~~~~~dg~i~~~~~~~~  297 (337)
T 1gxr_A          274 AYCGKWFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CCCCCEEEEecCCCcEEEEECCCC
Confidence            999999999999999999997543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.6e-37  Score=251.01  Aligned_cols=243  Identities=22%  Similarity=0.315  Sum_probs=192.8

Q ss_pred             ceeeCCC----CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451            2 TCAFSPT----GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT   77 (267)
Q Consensus         2 ~~~~~~~----g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~   77 (267)
                      +++|+|+    |++|++++.||+|++||+...       .....+.+|...|.+++|+|.+..+|++++.|+.|++||+.
T Consensus        74 ~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~  146 (366)
T 3k26_A           74 TCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ  146 (366)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCEEEEECTTTC-------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             EEEeccCCCCCCCEEEEecCCCEEEEEEchhc-------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence            5789998    779999999999999998652       24566789999999999999555689999999999999999


Q ss_pred             CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc---------------------------
Q 024451           78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---------------------------  130 (267)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~---------------------------  130 (267)
                      ++.....+..  ..+|...|.+++|++ +++++++++.|+.|++||++.....                           
T Consensus       147 ~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (366)
T 3k26_A          147 TDTLVAIFGG--VEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD  223 (366)
T ss_dssp             TTEEEEEECS--TTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred             cCeEEEEecc--cccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence            8877666521  136889999999997 5678899999999999998743211                           


Q ss_pred             eEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCee--------------eEEEEeecCCCCCCcEEEEEEccC
Q 024451          131 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ--------------LQVYYQQHGENEIPHVTSIAFSIS  196 (267)
Q Consensus       131 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~v~~~~~s~~  196 (267)
                      .....+|...|.++.|+  ++++++++.|+.|++||+++.+.              +..+     ..+...+.+++|+|+
T Consensus       224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~  296 (366)
T 3k26_A          224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF-----DYSQCDIWYMRFSMD  296 (366)
T ss_dssp             EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE-----ECSSCCSSCCCCEEC
T ss_pred             cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc-----cccCCcEEEEEEcCC
Confidence            11223488999999998  77999999999999999987643              2111     112345788899999


Q ss_pred             --CCEEEEEEeCCeEEEEeCCccceeeecccccCCc--cceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          197 --GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH--EGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       197 --~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                        +++|++|+.||.|++||+...+...........|  ...|.+++|+|++++|++|+.||.|++|++.
T Consensus       297 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          297 FWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             TTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence              9999999999999999998765332111111334  7899999999999999999999999999863

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-35  Score=245.90  Aligned_cols=240  Identities=19%  Similarity=0.308  Sum_probs=199.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++++|++++.|+.|++||...        .....+.+|...|.++.|+|++ .+|++++.|+.|++||+.++..
T Consensus       113 ~~~~s~~~~~l~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~  183 (425)
T 1r5m_A          113 CLAWSHDGNSIVTGVENGELRLWNKTG--------ALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTV  183 (425)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTS--------CEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCC--------CeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcE
Confidence            578999999999999999999999322        2456678999999999999975 5899999999999999988765


Q ss_pred             EEEeCCc---------------------------------------------------cccCCccceEEEEEeCCCCeEE
Q 024451           82 TSVFGGE---------------------------------------------------FQSGHTADVLSVSISGSNSRMF  110 (267)
Q Consensus        82 ~~~~~~~---------------------------------------------------~~~~~~~~i~~~~~~~~~~~~~  110 (267)
                      ...+...                                                   ....|...+.++++++. ++++
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l  262 (425)
T 1r5m_A          184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT-NKLL  262 (425)
T ss_dssp             EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT-TTEE
T ss_pred             EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC-CCEE
Confidence            4433211                                                   11257788999999974 5688


Q ss_pred             EEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEE
Q 024451          111 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS  190 (267)
Q Consensus       111 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  190 (267)
                      ++++.|+.|++||++. ......+.+|...|.++.|+|++ ++++++.|+.|++||+++++.+..+..     +...+.+
T Consensus       263 ~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~i~~  335 (425)
T 1r5m_A          263 LSASDDGTLRIWHGGN-GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV-----DGVPIFA  335 (425)
T ss_dssp             EEEETTSCEEEECSSS-BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC-----TTCCEEE
T ss_pred             EEEcCCCEEEEEECCC-CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc-----CCccEEE
Confidence            9999999999999875 34567777899999999999999 999999999999999998876655432     2346999


Q ss_pred             EEEccCCCEEEEEEeCCeEEEEeCCccc--------------------eeeecccccCCccc--eEEEEEECCCCCeEEE
Q 024451          191 IAFSISGRLLFAGYSNGDCYVWDTLLAK--------------------VVLNLGSLQNSHEG--RITCLGLSADGSALCT  248 (267)
Q Consensus       191 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~--------------------~~~~~~~~~~~~~~--~v~~~~~~p~~~~l~s  248 (267)
                      ++|+|++++|++++.||.|++||+...+                    .+..+    ..|..  .|.+++|+|++++|++
T Consensus       336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~  411 (425)
T 1r5m_A          336 GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY----QSSQDNDYIFDLSWNCAGNKISV  411 (425)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE----CCTTCCCCEEEEEECTTSSEEEE
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh----cCcccCCceEEEEccCCCceEEE
Confidence            9999999999999999999999998766                    33333    35655  9999999999999999


Q ss_pred             eECCCcEEEEecCc
Q 024451          249 GSWDTNLKIWAFGG  262 (267)
Q Consensus       249 gs~dg~i~~w~~~~  262 (267)
                      ++.||.|++|++.|
T Consensus       412 ~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          412 AYSLQEGSVVAIPG  425 (425)
T ss_dssp             EESSSCCEEEECCC
T ss_pred             EecCceEEEEeecC
Confidence            99999999999865

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=260.80  Aligned_cols=249  Identities=12%  Similarity=0.092  Sum_probs=189.0

Q ss_pred             ceeeCCC------CCeEEEccCCCeEEEeecCCCCCCC----CCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeE
Q 024451            2 TCAFSPT------GQSVACGGLDSVCSIFNLNSPTDKD----GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC   71 (267)
Q Consensus         2 ~~~~~~~------g~~l~~~~~d~~v~~w~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v   71 (267)
                      +++|+|+      +.+|++++.||+|++||+.......    ........+.+|...|++++|+|+  ..|++|+.||+|
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV  289 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFV  289 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEE
Confidence            4788886      6799999999999999986532110    001123467899999999999985  379999999999


Q ss_pred             EEEeCCCCee-EEEeCCccccCCccceEEEE-EeCCCC-eEEEEecCCCeEEEEeCCCcccceEEeecccc--ceeEEEE
Q 024451           72 VLWDITTGLR-TSVFGGEFQSGHTADVLSVS-ISGSNS-RMFVSGSCDSTARLWDTRVASRAVRTFHGHEG--DVNTVKF  146 (267)
Q Consensus        72 ~iwd~~~~~~-~~~~~~~~~~~~~~~i~~~~-~~~~~~-~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~i~~~~~  146 (267)
                      ++||++++.. ...+     .+|...|.+++ ..++++ +++++++.|++|++||++... ....+.+|..  .|.+++|
T Consensus       290 ~lWD~~~~~~~~~~~-----~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~-~~~~~~~~~~~~~v~~v~f  363 (524)
T 2j04_B          290 AEFDLTDPEVPSFYD-----QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA-TTKTTVSRFRGSNLVPVVY  363 (524)
T ss_dssp             EEEETTBCSSCSEEE-----ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH-HHCEEEEECSCCSCCCEEE
T ss_pred             EEEECCCCCCceEEe-----ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC-cccccccccccCcccceEe
Confidence            9999986532 2222     46899999995 334454 789999999999999997533 3445556653  4789999


Q ss_pred             ecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc-----c---
Q 024451          147 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-----K---  218 (267)
Q Consensus       147 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~-----~---  218 (267)
                      +|+++.+++++.|++|++||++++.++..+..     +...|.+++|+|++++|++|+.||.|++||....     +   
T Consensus       364 sp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-----H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~  438 (524)
T 2j04_B          364 CPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-----RETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSS  438 (524)
T ss_dssp             ETTTTEEEEECSSSEEEEEETTCTTCCEEEEE-----CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC----
T ss_pred             CCCcCeEEEeCCCCcEEEEECcccccceeeec-----CCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCc
Confidence            99999999999999999999998876655443     2347999999999999999999999999985321     0   


Q ss_pred             ------eeeecc--------------------------cccCCccceEEEEEECCCCC---eEEEeECCCcEEEEecCce
Q 024451          219 ------VVLNLG--------------------------SLQNSHEGRITCLGLSADGS---ALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       219 ------~~~~~~--------------------------~~~~~~~~~v~~~~~~p~~~---~l~sgs~dg~i~~w~~~~~  263 (267)
                            .+..+.                          .....|..+|.+++|+|+++   .+|+|+.||.|+||.+.+-
T Consensus       439 ~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          439 ATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             --CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             cceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence                  010000                          00124778999999999965   9999999999999998653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1e-35  Score=264.30  Aligned_cols=241  Identities=26%  Similarity=0.379  Sum_probs=195.6

Q ss_pred             ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+|++ ++|+|++.|++|++|++.......  ....+.+.+|...|.+++|+|++ .+|++|+.|++|++||+.++.
T Consensus       387 ~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~~~  463 (694)
T 3dm0_A          387 AIATPIDNADIIVSASRDKSIILWKLTKDDKAY--GVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAAGV  463 (694)
T ss_dssp             EEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--CEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred             EEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--ccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCc
Confidence            57888865 799999999999999987532111  12345688999999999999975 689999999999999999987


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE---eeccccceeEEEEecCC--CEEEE
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT---FHGHEGDVNTVKFFPDG--NRFGT  155 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~~i~~~~~~~~~--~~l~~  155 (267)
                      ....+     .+|...|.+++|++. ++++++++.|+.|++||..... ....   ..+|...|.++.|+|++  ..+++
T Consensus       464 ~~~~~-----~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  536 (694)
T 3dm0_A          464 STRRF-----VGHTKDVLSVAFSLD-NRQIVSASRDRTIKLWNTLGEC-KYTISEGGEGHRDWVSCVRFSPNTLQPTIVS  536 (694)
T ss_dssp             EEEEE-----ECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCE-EEEECSSTTSCSSCEEEEEECSCSSSCEEEE
T ss_pred             ceeEE-----eCCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEECCCCc-ceeeccCCCCCCCcEEEEEEeCCCCcceEEE
Confidence            76655     469999999999974 5678999999999999975322 1211   24688899999999986  68999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEE
Q 024451          156 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  235 (267)
Q Consensus       156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  235 (267)
                      ++.|++|++||+++.+....+.     .+...|.+++|+|++++|++|+.||.|++||+...+.+..+     .+...|.
T Consensus       537 ~s~d~~v~vwd~~~~~~~~~~~-----~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~-----~~~~~v~  606 (694)
T 3dm0_A          537 ASWDKTVKVWNLSNCKLRSTLA-----GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL-----EANSVIH  606 (694)
T ss_dssp             EETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC-----BCSSCEE
T ss_pred             EeCCCeEEEEECCCCcEEEEEc-----CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe-----cCCCcEE
Confidence            9999999999999877654432     23457999999999999999999999999999888766543     2456799


Q ss_pred             EEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          236 CLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       236 ~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      +++|+|++.+|++++ |+.|++|++...
T Consensus       607 ~~~~sp~~~~l~~~~-~~~i~iwd~~~~  633 (694)
T 3dm0_A          607 ALCFSPNRYWLCAAT-EHGIKIWDLESK  633 (694)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred             EEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence            999999998888765 667999998653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-35  Score=256.94  Aligned_cols=232  Identities=28%  Similarity=0.501  Sum_probs=194.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+++.|++++.|+++++||....        ....+.+|...|.+++|+|++ .++++++.|+.|++||... ..
T Consensus       308 ~~~~~~~~~~l~t~~~d~~i~~w~~~~~--------~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~-~~  377 (577)
T 2ymu_A          308 GVAFSPDGQTIASASDDKTVKLWNRNGQ--------HLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNG-QL  377 (577)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTC-CE
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCC--------eeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCCC-CE
Confidence            5789999999999999999999997531        345577899999999999976 5899999999999999654 33


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...+     .+|...|.++++++ +++++++++.|+.|++||..  .+....+.+|...|.+++|+|+++++++++.|++
T Consensus       378 ~~~~-----~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~  449 (577)
T 2ymu_A          378 LQTL-----TGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT  449 (577)
T ss_dssp             EEEE-----ECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEe-----cCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE
Confidence            3333     36888999999986 46678999999999999964  4467778899999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      |++||.. ++.+..+..     +...+.+++|+|++++|++++.|+.|++||. .++.+..+    ..|...|++++|+|
T Consensus       450 v~~w~~~-~~~~~~~~~-----~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~----~~h~~~v~~l~~s~  518 (577)
T 2ymu_A          450 VKLWNRN-GQLLQTLTG-----HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL----TGHSSSVRGVAFSP  518 (577)
T ss_dssp             EEEEETT-SCEEEEEEC-----CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE----ECCSSCEEEEEECT
T ss_pred             EEEEECC-CCEEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE----eCCCCCEEEEEEcC
Confidence            9999974 444443322     2346999999999999999999999999995 44544433    46889999999999


Q ss_pred             CCCeEEEeECCCcEEEEecCc
Q 024451          242 DGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +|++||+++.||.|++|+..+
T Consensus       519 dg~~l~s~~~dg~v~lwd~~~  539 (577)
T 2ymu_A          519 DGQTIASASDDKTVKLWNRNG  539 (577)
T ss_dssp             TSSCEEEEETTSEEEEECTTS
T ss_pred             CCCEEEEEECcCEEEEEeCCC
Confidence            999999999999999999754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.9e-36  Score=249.49  Aligned_cols=235  Identities=13%  Similarity=0.091  Sum_probs=174.6

Q ss_pred             EEccCCCeEEEeecCCCCCCCCCCcc--cccccCCeeeEEEEEEecCCCeeEE--EeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451           13 ACGGLDSVCSIFNLNSPTDKDGNLPV--SRMLSGHKGYVSCCQYVPDEDTHLI--TSSGDQTCVLWDITTGLRTSVFGGE   88 (267)
Q Consensus        13 ~~~~~d~~v~~w~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~--s~~~d~~v~iwd~~~~~~~~~~~~~   88 (267)
                      ++++.|+++++|++....+.......  ......+...+.+++|+|++. +++  +++.|++|+|||++++.....+   
T Consensus        98 ~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~-~la~as~~~d~~i~iwd~~~~~~~~~~---  173 (365)
T 4h5i_A           98 TQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT-VAAIASSKVPAIMRIIDPSDLTEKFEI---  173 (365)
T ss_dssp             HHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS-CEEEEESCSSCEEEEEETTTTEEEEEE---
T ss_pred             EEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC-EEEEEECCCCCEEEEeECCCCcEEEEe---
Confidence            34567889999998653221100000  112234556789999999875 554  5568999999999998776654   


Q ss_pred             cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce-EEeeccccceeEEEEecCCCEEEEeeCCC----cEE
Q 024451           89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTGSDDG----TCR  163 (267)
Q Consensus        89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~  163 (267)
                         .|...|.+++|+| +++++++++.++ +++|+........ ....+|...|.+++|+|+++++++++.|+    .++
T Consensus       174 ---~~~~~V~~v~fsp-dg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~  248 (365)
T 4h5i_A          174 ---ETRGEVKDLHFST-DGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLT  248 (365)
T ss_dssp             ---ECSSCCCEEEECT-TSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEE
T ss_pred             ---CCCCceEEEEEcc-CCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEe
Confidence               3667899999996 567788887554 5555554443322 23456888999999999999999999887    688


Q ss_pred             EEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC
Q 024451          164 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG  243 (267)
Q Consensus       164 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  243 (267)
                      +||+.......... .....+...|.+++|+|+|++|++|+.|+.|+|||+.+++.+..+   ...|..+|++++|+|||
T Consensus       249 ~~~~~~~~~~~~~~-~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~---~~gH~~~V~~v~fSpdg  324 (365)
T 4h5i_A          249 KISIKSGNTSVLRS-KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF---KQAHSFAITEVTISPDS  324 (365)
T ss_dssp             EEEEETTEEEEEEE-EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE---TTSSSSCEEEEEECTTS
T ss_pred             ecccccceecceee-eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe---cCcccCCEEEEEECCCC
Confidence            89987665432111 111233457999999999999999999999999999988876543   25799999999999999


Q ss_pred             CeEEEeECCCcEEEEec
Q 024451          244 SALCTGSWDTNLKIWAF  260 (267)
Q Consensus       244 ~~l~sgs~dg~i~~w~~  260 (267)
                      ++|||||.|++|+||++
T Consensus       325 ~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          325 TYVASVSAANTIHIIKL  341 (365)
T ss_dssp             CEEEEEETTSEEEEEEC
T ss_pred             CEEEEEeCCCeEEEEEc
Confidence            99999999999999997

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-34  Score=235.25  Aligned_cols=234  Identities=20%  Similarity=0.386  Sum_probs=196.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++++|++++.|+.|++||+....     ......+.+|...|.++.|+|++ .++++++.|+.|++||++++..
T Consensus       102 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~  175 (337)
T 1gxr_A          102 SCKLLPDGCTLIVGGEASTLSIWDLAAPT-----PRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTL  175 (337)
T ss_dssp             EEEECTTSSEEEEEESSSEEEEEECCCC-------EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEcCCCCEEEEEcCCCcEEEEECCCCC-----cceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCce
Confidence            57899999999999999999999986532     22445677899999999999965 5899999999999999998876


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ...+     ..|...+.++++++ +++.+++++.|+.|++||++... ....+ .+...+.+++|+|+++++++++.|+.
T Consensus       176 ~~~~-----~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~-~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~  247 (337)
T 1gxr_A          176 VRQF-----QGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGR-QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSN  247 (337)
T ss_dssp             EEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTE-EEEEE-ECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeee-----ecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCc-eEeee-cCCCceEEEEECCCCCEEEEEcCCCc
Confidence            6655     35788999999997 45788999999999999997533 34444 47788999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      |++||+++++... +     ..+...+.+++|+|+++++++++.||.|++||....+....     ..|...+.+++|+|
T Consensus       248 i~~~~~~~~~~~~-~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-----~~~~~~v~~~~~s~  316 (337)
T 1gxr_A          248 VEVLHVNKPDKYQ-L-----HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-----SKESSSVLSCDISV  316 (337)
T ss_dssp             EEEEETTSSCEEE-E-----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-----EECSSCEEEEEECT
T ss_pred             EEEEECCCCCeEE-E-----cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-----ecCCCcEEEEEECC
Confidence            9999998876432 1     12335799999999999999999999999999988776533     24778999999999


Q ss_pred             CCCeEEEeECCCcEEEEec
Q 024451          242 DGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~  260 (267)
                      ++++|++++.||.|++|++
T Consensus       317 ~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          317 DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEecCCCeEEEEEE
Confidence            9999999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.5e-36  Score=244.08  Aligned_cols=255  Identities=20%  Similarity=0.287  Sum_probs=192.0

Q ss_pred             ceeeCCC---CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEe------cCCCeeEEEeeCCCeEE
Q 024451            2 TCAFSPT---GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV------PDEDTHLITSSGDQTCV   72 (267)
Q Consensus         2 ~~~~~~~---g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~~~~l~s~~~d~~v~   72 (267)
                      +++|+|+   |++|++++.|+.|++||+....      .....+.+|...|.++.|.      |+ +.+|++++.|+.|+
T Consensus        70 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~~~~d~~i~  142 (357)
T 3i2n_A           70 CGTFGATSLQQRYLATGDFGGNLHIWNLEAPE------MPVYSVKGHKEIINAIDGIGGLGIGEG-APEIVTGSRDGTVK  142 (357)
T ss_dssp             EEECTTCCTTTCCEEEEETTSCEEEECTTSCS------SCSEEECCCSSCEEEEEEESGGGCC-C-CCEEEEEETTSCEE
T ss_pred             EEEEcCCCCCCceEEEecCCCeEEEEeCCCCC------ccEEEEEecccceEEEeeccccccCCC-ccEEEEEeCCCeEE
Confidence            5789998   7999999999999999987532      1345678999999999764      54 45899999999999


Q ss_pred             EEeCCCCe-eEEEeCCccccCCccceEEEEEeC---CCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec
Q 024451           73 LWDITTGL-RTSVFGGEFQSGHTADVLSVSISG---SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP  148 (267)
Q Consensus        73 iwd~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~  148 (267)
                      +||+.++. ....+... ...+...+.++.+.+   ++++++++++.|+.|++||++...  ......|...|.++.|+|
T Consensus       143 vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~v~~~~~~~  219 (357)
T 3i2n_A          143 VWDPRQKDDPVANMEPV-QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA--LRWETNIKNGVCSLEFDR  219 (357)
T ss_dssp             EECTTSCSSCSEEECCC-TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEEESC
T ss_pred             EEeCCCCCCcceecccc-CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc--eeeecCCCCceEEEEcCC
Confidence            99998865 34444211 111244788888532   467789999999999999997543  244467889999999999


Q ss_pred             ---CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceee---
Q 024451          149 ---DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVL---  221 (267)
Q Consensus       149 ---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~---  221 (267)
                         +++++++++.|+.|++||+++++....+.......+...|.+++|+|+++ ++++|+.||.|++||+.......   
T Consensus       220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  299 (357)
T 3i2n_A          220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD  299 (357)
T ss_dssp             SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred             CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence               89999999999999999998765543332111112345799999999998 89999999999999986533210   


Q ss_pred             ------------ecccccCCccceEEEEEECCCCCeEE-EeECCCcEEEEecCceEec
Q 024451          222 ------------NLGSLQNSHEGRITCLGLSADGSALC-TGSWDTNLKIWAFGGYRRV  266 (267)
Q Consensus       222 ------------~~~~~~~~~~~~v~~~~~~p~~~~l~-sgs~dg~i~~w~~~~~~~~  266 (267)
                                  ........|.++|.+++|+|++++|+ +|+.||.|++|++..+.++
T Consensus       300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~i  357 (357)
T 3i2n_A          300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNKI  357 (357)
T ss_dssp             TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC----
T ss_pred             CCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcccC
Confidence                        00011246889999999999999998 8999999999999877653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=4.7e-37  Score=255.57  Aligned_cols=250  Identities=15%  Similarity=0.118  Sum_probs=177.7

Q ss_pred             eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEec-------CCCeeEEEeeCCCeEEEEeCC
Q 024451            5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-------DEDTHLITSSGDQTCVLWDIT   77 (267)
Q Consensus         5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------~~~~~l~s~~~d~~v~iwd~~   77 (267)
                      +.+++.+|++++.|++|++||.......  .......+.||.+.|.+++|+|       .++++|+||+.|++|+|||+.
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~--~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETII--TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEE--EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccc--eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence            4567788999999999999998653211  1123456889999999999987       234789999999999999998


Q ss_pred             CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce------------------------EE
Q 024451           78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV------------------------RT  133 (267)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~------------------------~~  133 (267)
                      ++.....+     .+|...+.+++|+|.+..++++++.|+.|++||++......                        ..
T Consensus       175 ~~~~~~~~-----~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  249 (393)
T 4gq1_A          175 DEGPILAG-----YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH  249 (393)
T ss_dssp             TTEEEEEE-----EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred             CCceeeee-----cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence            77655443     35778899999998766789999999999999987532110                        11


Q ss_pred             eeccccceeEEEEe-cCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCC-------------CCCcEEEEEEcc--CC
Q 024451          134 FHGHEGDVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-------------EIPHVTSIAFSI--SG  197 (267)
Q Consensus       134 ~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~s~--~~  197 (267)
                      ..+|...+.++.|. |+++.+++++.|+++++||+..++....+.......             .........|++  ++
T Consensus       250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (393)
T 4gq1_A          250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD  329 (393)
T ss_dssp             --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred             cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCC
Confidence            24677788999987 799999999999999999998765443322111000             000111223443  34


Q ss_pred             CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceEec
Q 024451          198 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRRV  266 (267)
Q Consensus       198 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~~  266 (267)
                      .++++|+.||.|++||...++.....    ..|..+|.+++|+|||++||+++.|| +.+|.+-|+.||
T Consensus       330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~----~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~gf~~l  393 (393)
T 4gq1_A          330 YFATAHSQHGLIQLINTYEKDSNSIP----IQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMGFTRL  393 (393)
T ss_dssp             EEEEEETTTTEEEEEETTCTTCCEEE----EECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGGGCC-
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEEe----cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeCcccC
Confidence            46777888999999999877655433    35778999999999999999998655 777778888775

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.4e-36  Score=250.57  Aligned_cols=237  Identities=20%  Similarity=0.290  Sum_probs=191.3

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      ..|+|++++|++++.|+.|++||+...       .....+.+|...|++++|+|++ .+|++++.|++|++||+.++...
T Consensus       103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~  174 (420)
T 3vl1_A          103 DTAKLQMRRFILGTTEGDIKVLDSNFN-------LQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNP  174 (420)
T ss_dssp             EEECSSSCEEEEEETTSCEEEECTTSC-------EEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCC
T ss_pred             EEEecCCCEEEEEECCCCEEEEeCCCc-------ceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCc
Confidence            368999999999999999999997642       2455678999999999999975 58999999999999999987665


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec---cc---------------------
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---HE---------------------  138 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~---~~---------------------  138 (267)
                      ..+     .+|...|.+++|++. ++++++++.|+.|++||++.. +....+..   |.                     
T Consensus       175 ~~~-----~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  247 (420)
T 3vl1_A          175 RTL-----IGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTG-TTIHTFNRKENPHDGVNSIALFVGTDRQLHEIST  247 (420)
T ss_dssp             EEE-----ECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTT-EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCC
T ss_pred             eEE-----cCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCC-ceeEEeecCCCCCCCccEEEEecCCcceeeeccc
Confidence            554     368899999999974 668899999999999999754 34555543   22                     


Q ss_pred             cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCcc
Q 024451          139 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLA  217 (267)
Q Consensus       139 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~  217 (267)
                      ..+.+++|+|+++++++++.|+.|++||+++++....+..    .+...+.+++|+|++. +|++|+.||.|++||+...
T Consensus       248 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~  323 (420)
T 3vl1_A          248 SKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS----KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP  323 (420)
T ss_dssp             CCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC----TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             CcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc----ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence            3445555678899999999999999999998876654432    2335799999999999 9999999999999999876


Q ss_pred             ce-eeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          218 KV-VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       218 ~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +. +..+   ...|...|.++.+ |++++|++++.||.|++|++..
T Consensus       324 ~~~~~~~---~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          324 ECPVGEF---LINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             TSCSEEE---EESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred             cCchhhh---hccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence            54 2222   2346778888865 5788999999999999999754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.2e-35  Score=242.77  Aligned_cols=241  Identities=15%  Similarity=0.202  Sum_probs=197.3

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++.|+.|++||+....     ......+.+|...|.+++|+|++ .+|++++.|+.|++||++++..
T Consensus        13 ~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~   86 (372)
T 1k8k_C           13 CHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTW   86 (372)
T ss_dssp             EEEECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeCCCCc-----EEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCCCee
Confidence            68899999999999999999999986421     22456778999999999999965 5899999999999999988764


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc---ceEEeeccccceeEEEEecCCCEEEEeeC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDGNRFGTGSD  158 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  158 (267)
                      ...+.   ...|...+.+++|++ +++++++++.|+.|++||++....   ......+|...|.+++|+|+++++++++.
T Consensus        87 ~~~~~---~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           87 KPTLV---ILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             EEEEE---CCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             eeeEE---eecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            43332   135788899999996 467889999999999999875432   12333578899999999999999999999


Q ss_pred             CCcEEEEeCC------------------CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee
Q 024451          159 DGTCRLFDIR------------------TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       159 d~~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  220 (267)
                      |+.|++||++                  .++....+.     .+...+.+++|+|++++|++++.||.|++||+...+.+
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  237 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-----SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  237 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-----CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecC-----CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence            9999999964                  333333221     23457999999999999999999999999999887766


Q ss_pred             eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          221 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ..+    ..|..+|.+++|+|++++|++| .|+.|++|++..
T Consensus       238 ~~~----~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          238 ATL----ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEE----ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEE----ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            554    3578899999999999999887 899999999754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-37  Score=254.76  Aligned_cols=256  Identities=14%  Similarity=0.131  Sum_probs=203.7

Q ss_pred             ceeeCCC-CCeEEEccCCCeEEEeecCCCCCCCC--CCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451            2 TCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDG--NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         2 ~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      +++|+|+ +++|++++.|++|++||+........  .........+|...|.+++|+|++..++++++.|+.|++||+++
T Consensus       118 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  197 (416)
T 2pm9_A          118 TVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA  197 (416)
T ss_dssp             EEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred             EEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence            6789998 89999999999999999876431100  01112345689999999999998667899999999999999999


Q ss_pred             CeeEEEeCCc-cccCCccceEEEEEeCCCCeEEEEecCCC---eEEEEeCCCcccceEEee-ccccceeEEEEec-CCCE
Q 024451           79 GLRTSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRTFH-GHEGDVNTVKFFP-DGNR  152 (267)
Q Consensus        79 ~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~s~~~d~---~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~  152 (267)
                      +.....+... ...+|...+.+++|++.+..++++++.|+   .|++||++........+. +|...|.+++|+| ++++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  277 (416)
T 2pm9_A          198 KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL  277 (416)
T ss_dssp             TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC
T ss_pred             CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe
Confidence            8776665421 11234788999999987667899999998   999999986555667777 8999999999999 8999


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecc-------
Q 024451          153 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLG-------  224 (267)
Q Consensus       153 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~-------  224 (267)
                      +++++.|+.|++||+++++.+..+..     +...+.+++|+|++ .++++++.||.|++||+...+......       
T Consensus       278 l~s~~~dg~v~~wd~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  352 (416)
T 2pm9_A          278 LLSSGRDNTVLLWNPESAEQLSQFPA-----RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQ  352 (416)
T ss_dssp             EEEEESSSEEEEECSSSCCEEEEEEC-----SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC--------
T ss_pred             EEEEeCCCCEEEeeCCCCccceeecC-----CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccccccc
Confidence            99999999999999998877665432     23468899999999 899999999999999987654322110       


Q ss_pred             ------------------------cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          225 ------------------------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       225 ------------------------~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                                              ..+..|..++.+++|+|+|++|++|+.||.|+||++..
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          353 ESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             --------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             CCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence                                    01112667888999999999999999999999998753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.3e-36  Score=245.29  Aligned_cols=250  Identities=18%  Similarity=0.265  Sum_probs=197.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++++|++++.|++|++||+....     ......+.+|...|.++.|+|++ .+|++++.|+.|++||++++..
T Consensus        57 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~  130 (372)
T 1k8k_C           57 GVDWAPDSNRIVTCGTDRNAYVWTLKGRT-----WKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQEND  130 (372)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEEETTE-----EEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTT
T ss_pred             EEEEeCCCCEEEEEcCCCeEEEEECCCCe-----eeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCc
Confidence            57899999999999999999999985421     11233457799999999999975 5899999999999999987652


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC-----------------cccceEEeeccccceeEE
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-----------------ASRAVRTFHGHEGDVNTV  144 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~i~~~  144 (267)
                      ..... ....+|...+.+++|++ +++++++++.|+.|++||++.                 .......+.+|...|.++
T Consensus       131 ~~~~~-~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  208 (372)
T 1k8k_C          131 WWVCK-HIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV  208 (372)
T ss_dssp             EEEEE-EECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE
T ss_pred             ceeee-eeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEE
Confidence            11111 11246888999999997 567889999999999999631                 234566777899999999


Q ss_pred             EEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc--cc--ee
Q 024451          145 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL--AK--VV  220 (267)
Q Consensus       145 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~--~~--~~  220 (267)
                      .|+|+++++++++.|+.|++||+++++.+..+..     +...+.+++|+|++.++++| .|+.+++||...  ++  ..
T Consensus       209 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~  282 (372)
T 1k8k_C          209 CFSANGSRVAWVSHDSTVCLADADKKMAVATLAS-----ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFG  282 (372)
T ss_dssp             EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-----SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEEC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc-----CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEe
Confidence            9999999999999999999999998887665532     23469999999999999888 899999999876  31  00


Q ss_pred             ee-----------------c----------------ccccCCccceEEEEEEC-CCC---CeEEEeECCCcEEEEecCce
Q 024451          221 LN-----------------L----------------GSLQNSHEGRITCLGLS-ADG---SALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       221 ~~-----------------~----------------~~~~~~~~~~v~~~~~~-p~~---~~l~sgs~dg~i~~w~~~~~  263 (267)
                      ..                 +                ..+...|..+|.+++|. ++|   ++|++|+.||.|++|++...
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          283 GRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             CCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             eccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence            00                 0                22234799999999976 677   99999999999999998654


Q ss_pred             Ee
Q 024451          264 RR  265 (267)
Q Consensus       264 ~~  265 (267)
                      ++
T Consensus       363 ~~  364 (372)
T 1k8k_C          363 ES  364 (372)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.9e-35  Score=247.52  Aligned_cols=255  Identities=23%  Similarity=0.356  Sum_probs=199.2

Q ss_pred             ceeeCCC-CCeEEEccCCCeEEEeecCCCCCC---CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451            2 TCAFSPT-GQSVACGGLDSVCSIFNLNSPTDK---DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT   77 (267)
Q Consensus         2 ~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~   77 (267)
                      +++|+|+ +.+|++++.||.|++|++......   .+.......+.+|...|++++|+|++..+|++|+.||+|++||+.
T Consensus       133 ~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  212 (430)
T 2xyi_A          133 RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN  212 (430)
T ss_dssp             EEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETT
T ss_pred             EEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCC
Confidence            5789997 789999999999999998752111   112334567789999999999999876589999999999999998


Q ss_pred             CCeeE--EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc--cceEEeeccccceeEEEEecCCC-E
Q 024451           78 TGLRT--SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDGN-R  152 (267)
Q Consensus        78 ~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~-~  152 (267)
                      ++...  .........+|...|.+++|++.+..++++++.|+.|++||++...  .....+..|...|.+++|+|+++ +
T Consensus       213 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~  292 (430)
T 2xyi_A          213 ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI  292 (430)
T ss_dssp             SCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred             CCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCE
Confidence            73210  0001112246888999999998778899999999999999998642  45667778999999999999887 6


Q ss_pred             EEEeeCCCcEEEEeCCCCe-eeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceee---------
Q 024451          153 FGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVL---------  221 (267)
Q Consensus       153 l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~---------  221 (267)
                      +++++.|+.|++||+++.+ .+..+. .    +...|.+++|+|++. ++++++.||.|++||+.......         
T Consensus       293 l~tg~~dg~v~vwd~~~~~~~~~~~~-~----h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  367 (430)
T 2xyi_A          293 LATGSADKTVALWDLRNLKLKLHSFE-S----HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  367 (430)
T ss_dssp             EEEEETTSEEEEEETTCTTSCSEEEE-C----CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCC
T ss_pred             EEEEeCCCeEEEEeCCCCCCCeEEee-c----CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCC
Confidence            8899999999999998743 333332 2    234699999999985 68999999999999987622100         


Q ss_pred             -ecccccCCccceEEEEEECCCCC-eEEEeECCCcEEEEecC
Q 024451          222 -NLGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       222 -~~~~~~~~~~~~v~~~~~~p~~~-~l~sgs~dg~i~~w~~~  261 (267)
                       ........|...|.+++|+|+++ +|++++.||.|++|++.
T Consensus       368 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          368 PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             TTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             cceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence             11112356888999999999999 89999999999999874

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7.5e-35  Score=244.27  Aligned_cols=236  Identities=22%  Similarity=0.377  Sum_probs=194.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++|+.|++|++||+...       ...+.+.+|...+.++.+++   .++++|+.|+.+++||......
T Consensus       152 sv~fspdg~~lasgs~Dg~v~iWd~~~~-------~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~  221 (420)
T 4gga_A          152 SVAWIKEGNYLAVGTSSAEVQLWDVQQQ-------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH  221 (420)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC
T ss_pred             EEEECCCCCEEEEEECCCeEEEEEcCCC-------cEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccce
Confidence            6889999999999999999999998652       35677889999999998865   4799999999999999976533


Q ss_pred             E-EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc---ceEEeeccccceeEEEEecCC-CEEEE-
Q 024451           82 T-SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDG-NRFGT-  155 (267)
Q Consensus        82 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~-~~l~~-  155 (267)
                      . ..+     .+|...+..+.+.+ .++++++++.|+.+++|+......   .......|...|.+++|+|.+ ..+++ 
T Consensus       222 ~~~~~-----~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~  295 (420)
T 4gga_A          222 HVATL-----SGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG  295 (420)
T ss_dssp             EEEEE-----ECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEE
T ss_pred             eeEEe-----cccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEE
Confidence            2 222     46888899998886 467889999999999999864332   345566788999999999965 45554 


Q ss_pred             -eeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE--eCCeEEEEeCCccceeeecccccCCccc
Q 024451          156 -GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEG  232 (267)
Q Consensus       156 -~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~  232 (267)
                       |+.|++|++||+++++....+..      ...+.++.|++++..+++++  .||.|++||..+.+.+..+    ..|.+
T Consensus       296 ~gs~D~~I~iwd~~t~~~~~~~~~------~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l----~gH~~  365 (420)
T 4gga_A          296 GGTSDRHIRIWNVCSGACLSAVDA------HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL----KGHTS  365 (420)
T ss_dssp             ECTTTCEEEEEETTTTEEEEEEEC------SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE----CCCSS
T ss_pred             eecCCCEEEEEeCCccccceeecc------ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE----cCCCC
Confidence             45899999999999887665432      13588999999999988765  6899999999888877655    57999


Q ss_pred             eEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          233 RITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      +|++++|+|+|++|+|||.|++|+||++...
T Consensus       366 ~V~~l~~spdg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          366 RVLSLTMSPDGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             CEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            9999999999999999999999999998643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-34  Score=245.96  Aligned_cols=234  Identities=25%  Similarity=0.382  Sum_probs=196.6

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS   83 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~   83 (267)
                      ++.+++++|++|+.||+|++||+...       .....+.+|.+.|.+++|+|++  ++++|+.|++|++||++++....
T Consensus       127 ~~~~~~~~l~sgs~dg~i~vwd~~~~-------~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~  197 (464)
T 3v7d_B          127 CLQFEDNYVITGADDKMIRVYDSINK-------KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTH  197 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEECCCEEEEEcCCCcEEEEECCCC-------cEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEE
Confidence            45667889999999999999998652       2566788999999999999864  89999999999999999988776


Q ss_pred             EeCCccccCCccceEEEEEeC-CCCeEEEEecCCCeEEEEeCCCcccc----------------------eEEeeccccc
Q 024451           84 VFGGEFQSGHTADVLSVSISG-SNSRMFVSGSCDSTARLWDTRVASRA----------------------VRTFHGHEGD  140 (267)
Q Consensus        84 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~s~~~d~~i~iwd~~~~~~~----------------------~~~~~~~~~~  140 (267)
                      .+     .+|...|.++++.+ +++.++++++.|+.|++||++.....                      ...+.+|...
T Consensus       198 ~~-----~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (464)
T 3v7d_B          198 VF-----EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS  272 (464)
T ss_dssp             EE-----CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred             EE-----CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence            65     36889999999985 45678999999999999998753321                      4456778888


Q ss_pred             eeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee
Q 024451          141 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       141 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  220 (267)
                      +.++  +++++++++++.|+.|++||+++++.+..+.     .+...+.+++|+|+++.+++|+.||.|++||+.+++.+
T Consensus       273 v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  345 (464)
T 3v7d_B          273 VRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-----GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM  345 (464)
T ss_dssp             EEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            8777  5678899999999999999999887765542     23356999999999999999999999999999888776


Q ss_pred             eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          221 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      ..+    ..|...|.+++|+  +++|++|+.||.|++|++....
T Consensus       346 ~~~----~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~  383 (464)
T 3v7d_B          346 YTL----QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS  383 (464)
T ss_dssp             EEE----CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred             EEE----eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc
Confidence            655    4688999999998  5899999999999999986543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.7e-35  Score=265.39  Aligned_cols=239  Identities=21%  Similarity=0.295  Sum_probs=205.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++.||+|++||+...       .....+.+|.+.|.++.|+|++ .+|++++.|+.|++||+.++..
T Consensus        18 ~i~~sp~~~~la~~~~~g~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~   89 (814)
T 3mkq_A           18 GIDFHPTEPWVLTTLYSGRVEIWNYETQ-------VEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGEK   89 (814)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCC-------ceEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcE
Confidence            6789999999999999999999998642       2456778999999999999976 5899999999999999999877


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDG  160 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~  160 (267)
                      ...+     .+|...|.+++|++. ++.+++++.||.|++||+.........+.+|...|.+++|+| +++.+++++.|+
T Consensus        90 ~~~~-----~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  163 (814)
T 3mkq_A           90 VVDF-----EAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (814)
T ss_dssp             EEEE-----ECCSSCEEEEEECSS-SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             EEEE-----ecCCCCEEEEEEeCC-CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence            6655     368889999999974 567889999999999999765456677888999999999999 889999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc--CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      .|++||+++++....+...+    ...+..++|+|  ++.++++|+.||.|++||....+.+..+    ..|...|.+++
T Consensus       164 ~v~vwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~v~~~~  235 (814)
T 3mkq_A          164 TVKVWSLGQSTPNFTLTTGQ----ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL----EGHMSNVSFAV  235 (814)
T ss_dssp             EEEEEETTCSSCSEEEECCC----TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE----ECCSSCEEEEE
T ss_pred             eEEEEECCCCcceeEEecCC----CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE----cCCCCCEEEEE
Confidence            99999998776655443322    24588999999  9999999999999999999887765544    45888999999


Q ss_pred             ECCCCCeEEEeECCCcEEEEecCc
Q 024451          239 LSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       239 ~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      |+|++++|++|+.||.|++|++..
T Consensus       236 ~~~~~~~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          236 FHPTLPIIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCC
Confidence            999999999999999999999764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.1e-35  Score=241.98  Aligned_cols=250  Identities=15%  Similarity=0.210  Sum_probs=197.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC---CC---eeEEEeeCCCeEEEEe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---ED---THLITSSGDQTCVLWD   75 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~---~~l~s~~~d~~v~iwd   75 (267)
                      +++|+|  ++|++++.||+|++|++..... ....+....+.+|...|.++.|+|+   ++   .+|++++.|+.|++||
T Consensus        21 ~~~~~~--~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~   97 (397)
T 1sq9_A           21 SVSACN--SFTVSCSGDGYLKVWDNKLLDN-ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYR   97 (397)
T ss_dssp             EEEECS--SEEEEEETTSEEEEEESBCCTT-CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEE
T ss_pred             EEEecC--CeEEEEcCCCEEEEEECCCccc-ccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEE
Confidence            678988  8999999999999999876321 1123345677899999999999996   24   5899999999999999


Q ss_pred             CCCCee-----EEEeCCccccCC-----ccceEEEEEe----CCCCeE-EEEecCCCeEEEEeCCC------cccceE--
Q 024451           76 ITTGLR-----TSVFGGEFQSGH-----TADVLSVSIS----GSNSRM-FVSGSCDSTARLWDTRV------ASRAVR--  132 (267)
Q Consensus        76 ~~~~~~-----~~~~~~~~~~~~-----~~~i~~~~~~----~~~~~~-~~s~~~d~~i~iwd~~~------~~~~~~--  132 (267)
                      +.++..     ...+     ..|     ...|.+++|+    +. +.. +++++.|+.|++||++.      .. .+.  
T Consensus        98 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~  170 (397)
T 1sq9_A           98 ITREDETKKVIFEKL-----DLLDSDMKKHSFWALKWGASNDRL-LSHRLVATDVKGTTYIWKFHPFADESNSL-TLNWS  170 (397)
T ss_dssp             EEECTTTCCEEEEEE-----CCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHT-TTCCC
T ss_pred             ccCCcccccccceee-----cccccccCCCcEEEEEEeeccCCC-CceEEEEEeCCCcEEEEeCCccccccccc-eeecc
Confidence            987654     3333     245     5889999999    64 456 89999999999999875      32 333  


Q ss_pred             ---Ee-------eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCC---CCcEEEEEEccCCCE
Q 024451          133 ---TF-------HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE---IPHVTSIAFSISGRL  199 (267)
Q Consensus       133 ---~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~  199 (267)
                         .+       ..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+...  ..+   ...+.+++|+|++.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~h~~~~~~i~~i~~~~~~~~  247 (397)
T 1sq9_A          171 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ--HSMINNSNSIRSVKFSPQGSL  247 (397)
T ss_dssp             CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC--C---CCCCCEEEEEECSSTTE
T ss_pred             CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc--ccccccCCccceEEECCCCCE
Confidence               45       3478899999999999 9999999999999999988766554320  002   346999999999999


Q ss_pred             EEEEEeC---CeEEEEeCCccceeeecccc---------cCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          200 LFAGYSN---GDCYVWDTLLAKVVLNLGSL---------QNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       200 l~~g~~d---g~i~i~d~~~~~~~~~~~~~---------~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      |++++.|   |.|++||+...+.+..+...         ...|...|.+++|+|++++|++++.||.|++|++....
T Consensus       248 l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          248 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  324 (397)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            9999999   99999999887766554210         00188999999999999999999999999999986543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.5e-35  Score=242.44  Aligned_cols=242  Identities=16%  Similarity=0.146  Sum_probs=190.1

Q ss_pred             ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+|++ ++|++++.|++|++||+....     ........+|...|.++.|+|++..+|++++.|+.|++||+.+..
T Consensus        78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (383)
T 3ei3_B           78 SLEWHPTHPTTVAVGSKGGDIILWDYDVQN-----KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV  152 (383)
T ss_dssp             EEEECSSCTTEEEEEEBTSCEEEEETTSTT-----CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE
T ss_pred             EEEECCCCCCEEEEEcCCCeEEEEeCCCcc-----cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc
Confidence            67899999 999999999999999987532     122223457999999999999656789999999999999998643


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEEEeeCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDD  159 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d  159 (267)
                      . ..+.  ....|...+.++++++ +++++++++.|+.|++||++  ......+.+|...|.+++|+|+++ ++++++.|
T Consensus       153 ~-~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  226 (383)
T 3ei3_B          153 I-QVFA--KTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD  226 (383)
T ss_dssp             E-EEEE--CCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred             e-EEEe--ccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence            3 3332  1234567899999997 45688999999999999984  446777889999999999999998 99999999


Q ss_pred             CcEEEEeCCC----CeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEEEeCCeEEEEeCCccceeeecccc---cCCc-
Q 024451          160 GTCRLFDIRT----GHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL---QNSH-  230 (267)
Q Consensus       160 ~~i~iwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~---~~~~-  230 (267)
                      +.|++||+++    +.....+ .     +...+.+++|+| ++.+|++++.||.|++||+...+....+...   ...| 
T Consensus       227 ~~i~iwd~~~~~~~~~~~~~~-~-----~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  300 (383)
T 3ei3_B          227 ATVKLWDLRNIKDKNSYIAEM-P-----HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHL  300 (383)
T ss_dssp             SEEEEEEGGGCCSTTCEEEEE-E-----CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTS
T ss_pred             CEEEEEeCCCCCcccceEEEe-c-----CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccc
Confidence            9999999987    3333322 1     234799999999 9999999999999999998876544332110   0111 


Q ss_pred             ---------cceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          231 ---------EGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       231 ---------~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                               .+.+..++|+|++++  +|+.||.|++|++..
T Consensus       301 ~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~  339 (383)
T 3ei3_B          301 TPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS  339 (383)
T ss_dssp             CCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT
T ss_pred             cceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC
Confidence                     234566788888888  888999999999753

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.3e-35  Score=242.90  Aligned_cols=238  Identities=22%  Similarity=0.372  Sum_probs=194.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC-Ce
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~   80 (267)
                      +++|+|+|++|++++.||.|++||+...       .....+.+|...|.++.|.+   .++++++.|+.|++||+.. ..
T Consensus       139 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~  208 (401)
T 4aez_A          139 SVKWSHDGSFLSVGLGNGLVDIYDVESQ-------TKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANH  208 (401)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC
T ss_pred             EEEECCCCCEEEEECCCCeEEEEECcCC-------eEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcc
Confidence            5789999999999999999999998653       24567789999999999954   4799999999999999984 33


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCC-CEEEEee--
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGS--  157 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~--  157 (267)
                      ....+     .+|...|.++++++ +++++++++.|+.|++||++. ......+.+|...|.+++|+|++ .++++++  
T Consensus       209 ~~~~~-----~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs  281 (401)
T 4aez_A          209 QIGTL-----QGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT  281 (401)
T ss_dssp             EEEEE-----ECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTC-SSEEEEECCCSSCCCEEEECTTSTTEEEEECCT
T ss_pred             eeeEE-----cCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCC-CCccEEecCCcceEEEEEECCCCCCEEEEecCC
Confidence            33333     46889999999997 567899999999999999975 44566777899999999999976 4566654  


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE--EeCCeEEEEeCCccceeeecccccCCccceEE
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG--YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  235 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  235 (267)
                      .|+.|++||+++++....+.  +    ...+.+++|+|+++.++++  +.||.|++||+...+......  ...|.+.|.
T Consensus       282 ~d~~i~i~d~~~~~~~~~~~--~----~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~--~~~h~~~v~  353 (401)
T 4aez_A          282 MDKQIHFWNAATGARVNTVD--A----GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD--IPAHDTRVL  353 (401)
T ss_dssp             TTCEEEEEETTTCCEEEEEE--C----SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE--EECCSSCCC
T ss_pred             CCCEEEEEECCCCCEEEEEe--C----CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE--ecCCCCCEE
Confidence            79999999999887765542  1    2369999999999999994  489999999987754433221  146889999


Q ss_pred             EEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          236 CLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       236 ~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      +++|+|++++|++++.||.|++|++..-.
T Consensus       354 ~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          354 YSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             EEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            99999999999999999999999986543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.9e-35  Score=244.52  Aligned_cols=246  Identities=21%  Similarity=0.324  Sum_probs=194.9

Q ss_pred             eeeCCCCCeE-EEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-
Q 024451            3 CAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-   80 (267)
Q Consensus         3 ~~~~~~g~~l-~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-   80 (267)
                      |+++|+...+ ++++.||.|++|++......   ......+.+|.+.|++++|+|.++.+|++|+.|++|++||+.++. 
T Consensus        40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~---~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           40 CAVNPKFMALICEASGGGAFLVLPLGKTGRV---DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             EEECSSEEEEEBCCSSSCCEEEEETTCCEEC---CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             EEECCCeEEEEEEEcCCCEEEEEECccCCCC---CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            6778877544 45789999999998653211   123456789999999999999545689999999999999998762 


Q ss_pred             ------eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe--eccccceeEEEEecCCCE
Q 024451           81 ------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGHEGDVNTVKFFPDGNR  152 (267)
Q Consensus        81 ------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~  152 (267)
                            ....+     .+|...|.+++|++....++++++.|+.|++||++.. .....+  .+|...|.+++|+|++++
T Consensus       117 ~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~  190 (402)
T 2aq5_A          117 VLPLREPVITL-----EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-AAVLTLGPDVHPDTIYSVDWSRDGAL  190 (402)
T ss_dssp             SSCBCSCSEEE-----ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-EEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred             ccccCCceEEe-----cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-CccEEEecCCCCCceEEEEECCCCCE
Confidence                  22222     4689999999999865578999999999999999754 456666  789999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE---EeCCeEEEEeCCccceeeecccccCC
Q 024451          153 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG---YSNGDCYVWDTLLAKVVLNLGSLQNS  229 (267)
Q Consensus       153 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g---~~dg~i~i~d~~~~~~~~~~~~~~~~  229 (267)
                      |++++.|+.|++||+++++.+..+...+.   ...+.++.|+|++.++++|   +.|+.|++||+...+......  ...
T Consensus       191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~--~~~  265 (402)
T 2aq5_A          191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHE---GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ--ELD  265 (402)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSC---SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE--ECC
T ss_pred             EEEEecCCcEEEEeCCCCceeeeeccCCC---CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE--ecc
Confidence            99999999999999999877655422221   2247889999999999999   689999999988765422211  124


Q ss_pred             ccceEEEEEECCCCCeEEE-eECCCcEEEEecCc
Q 024451          230 HEGRITCLGLSADGSALCT-GSWDTNLKIWAFGG  262 (267)
Q Consensus       230 ~~~~v~~~~~~p~~~~l~s-gs~dg~i~~w~~~~  262 (267)
                      |...+.+++|+|++++|++ |+.||.|++|++..
T Consensus       266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~  299 (402)
T 2aq5_A          266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS  299 (402)
T ss_dssp             CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred             CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence            6678999999999999974 55799999999865

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.5e-35  Score=238.96  Aligned_cols=243  Identities=19%  Similarity=0.282  Sum_probs=190.2

Q ss_pred             ceeeCCCCC-eEEEccC---CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC--CeeEEEeeCCCeEEEEe
Q 024451            2 TCAFSPTGQ-SVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWD   75 (267)
Q Consensus         2 ~~~~~~~g~-~l~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~d~~v~iwd   75 (267)
                      +++|+|++. ++++++.   |++|++||+....      .......+|...|.+++|+|+.  +.+|++++.|+.|++||
T Consensus        23 ~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd   96 (357)
T 3i2n_A           23 DCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD------LKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN   96 (357)
T ss_dssp             EEEECTTSSEEEEEEC--CCCEEEEEEEECSSS------EEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred             EEEEcCCCceEEEecCccCCCcEEEEEeCCCCc------ccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence            678999995 4556666   9999999987532      1112234799999999999974  46899999999999999


Q ss_pred             CCCCe-eEEEeCCccccCCccceEEEEEeC-----CCCeEEEEecCCCeEEEEeCCCcccceEEeecccc----ceeEEE
Q 024451           76 ITTGL-RTSVFGGEFQSGHTADVLSVSISG-----SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG----DVNTVK  145 (267)
Q Consensus        76 ~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~i~~~~  145 (267)
                      +.++. ....+     .+|...|.++.+.+     ++++++++++.|+.|++||++........+..|.+    .+.++.
T Consensus        97 ~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (357)
T 3i2n_A           97 LEAPEMPVYSV-----KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA  171 (357)
T ss_dssp             TTSCSSCSEEE-----CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred             CCCCCccEEEE-----EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence            98875 44443     46889999997753     45678999999999999999865545666665544    788888


Q ss_pred             ----EecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc---CCCEEEEEEeCCeEEEEeCCccc
Q 024451          146 ----FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI---SGRLLFAGYSNGDCYVWDTLLAK  218 (267)
Q Consensus       146 ----~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~g~~dg~i~i~d~~~~~  218 (267)
                          |+|+++++++++.|+.|++||+++++....  ..    ....+.+++|+|   ++.++++|+.||.|++||+...+
T Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~----~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TN----IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             EECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EE----CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred             EEeccCCCCCEEEEEccCCeEEEEECccCceeee--cC----CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence                678999999999999999999998875432  11    224699999999   99999999999999999987655


Q ss_pred             eeeeccc-ccCCccceEEEEEECCCCC-eEEEeECCCcEEEEecC
Q 024451          219 VVLNLGS-LQNSHEGRITCLGLSADGS-ALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       219 ~~~~~~~-~~~~~~~~v~~~~~~p~~~-~l~sgs~dg~i~~w~~~  261 (267)
                      ....+.. ....|...|.+++|+|+++ +|++|+.||.|++|++.
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  290 (357)
T 3i2n_A          246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE  290 (357)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred             cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence            4322210 1126889999999999998 89999999999999975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-35  Score=264.05  Aligned_cols=251  Identities=18%  Similarity=0.269  Sum_probs=199.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC-CeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+|+|++|++++.||+|++||+....     ......+.+|.+.|++++|+|+. +.+|++|+.||+|++||+.++.
T Consensus        14 ~l~~s~dg~~latg~~dg~I~vwd~~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~   88 (753)
T 3jro_A           14 DAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR   88 (753)
T ss_dssp             EECCCSSSCCEEEEETTTEEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE
T ss_pred             EEEECCCCCeEEEEECCCcEEEEecCCCC-----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            57899999999999999999999986321     23556788999999999998762 4689999999999999999875


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcc-cceEEeeccccceeEEEEec----------
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFP----------  148 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~----------  148 (267)
                      .....   ...+|...|.++.|+|.. +.++++++.||.|++||++... .....+.+|...|.++.|+|          
T Consensus        89 ~~~~~---~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~  165 (753)
T 3jro_A           89 WSQIA---VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN  165 (753)
T ss_dssp             EEEEE---EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--------
T ss_pred             ccccc---cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccc
Confidence            22221   124688999999999752 6789999999999999997542 23445678999999999999          


Q ss_pred             ---CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC---CCEEEEEEeCCeEEEEeCCccceeee
Q 024451          149 ---DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---GRLLFAGYSNGDCYVWDTLLAKVVLN  222 (267)
Q Consensus       149 ---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~g~~dg~i~i~d~~~~~~~~~  222 (267)
                         +++++++++.||.|++||++++.......... ..+...|.+++|+|+   +.++++|+.||.|++||....+....
T Consensus       166 ~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~  244 (753)
T 3jro_A          166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK  244 (753)
T ss_dssp             -CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB
T ss_pred             cCCCCCEEEEEECCCeEEEEeccCCcccceeeeee-cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce
Confidence               58999999999999999998764322211111 233457999999999   89999999999999999876532111


Q ss_pred             -cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          223 -LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       223 -~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                       .......|.+.|.+++|+|+|++|++|+.||.|++|++.
T Consensus       245 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence             111124588899999999999999999999999999976

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=9.4e-35  Score=232.87  Aligned_cols=212  Identities=17%  Similarity=0.250  Sum_probs=168.7

Q ss_pred             cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC--eeEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCC
Q 024451           41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDS  117 (267)
Q Consensus        41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~  117 (267)
                      .+.+|...|++++|+|++ .+|++|+.|++|+|||+..+  .....+     .+|...|.+++|+++ .++++++++.|+
T Consensus         4 ~~~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~~~~~~~~l-----~gH~~~V~~v~~s~~~~g~~l~s~s~D~   77 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETHKLIDTL-----TGHEGPVWRVDWAHPKFGTILASCSYDG   77 (297)
T ss_dssp             ECCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSSCBCCCEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred             eccCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCCCcEEEEEE-----ccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence            467899999999999976 58999999999999999753  223333     479999999999754 367899999999


Q ss_pred             eEEEEeCCCcc-cceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEeCCCCeee-EEEEeecCCCCCCcEEEEEE
Q 024451          118 TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAF  193 (267)
Q Consensus       118 ~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~  193 (267)
                      +|++||++... .....+.+|...|.+++|+|+  +++|++++.|++|++||++++... .....    .+...+.+++|
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~----~h~~~v~~~~~  153 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID----AHAIGVNSASW  153 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE----CCSSCEEEEEE
T ss_pred             EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee----cccCccceEee
Confidence            99999987542 244566789999999999997  889999999999999999876322 11222    22346999999


Q ss_pred             ccC-------------CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC---CeEEEeECCCcEEE
Q 024451          194 SIS-------------GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG---SALCTGSWDTNLKI  257 (267)
Q Consensus       194 s~~-------------~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~sgs~dg~i~~  257 (267)
                      +|+             +++|++|+.|+.|++||....+...........|...|.+++|+|++   ++||+||.|++|+|
T Consensus       154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i  233 (297)
T 2pm7_B          154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII  233 (297)
T ss_dssp             CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence            997             57999999999999999876542111111125799999999999985   89999999999999


Q ss_pred             EecCc
Q 024451          258 WAFGG  262 (267)
Q Consensus       258 w~~~~  262 (267)
                      |++..
T Consensus       234 Wd~~~  238 (297)
T 2pm7_B          234 WTQDN  238 (297)
T ss_dssp             EEESS
T ss_pred             EEeCC
Confidence            99754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.5e-34  Score=269.82  Aligned_cols=242  Identities=25%  Similarity=0.419  Sum_probs=205.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++.||+|++||+...       .....+.+|.+.|.+++|+|++ .++++++.|++|++||+.++..
T Consensus       620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~~-------~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~  691 (1249)
T 3sfz_A          620 HACFSQDGQRIASCGADKTLQVFKAETG-------EKLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGKL  691 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCC-------CEEEEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCCCce
Confidence            5789999999999999999999998653       2456778999999999999976 5899999999999999999877


Q ss_pred             EEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ...+     .+|...+.++.|++. +..++++++.|+.|++||++.. .....+.+|.+.|.+++|+|+++++++++.|+
T Consensus       692 ~~~~-----~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg  765 (1249)
T 3sfz_A          692 VHTY-----DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADG  765 (1249)
T ss_dssp             EEEE-----ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECSSTTEEEEEESSS
T ss_pred             EEEE-----cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheecCCCCCEEEEEEecCCCEEEEEECCC
Confidence            7665     368889999999875 4557889999999999999754 45677889999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeec--------------------------------------------------CCCCCCcEEE
Q 024451          161 TCRLFDIRTGHQLQVYYQQH--------------------------------------------------GENEIPHVTS  190 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~v~~  190 (267)
                      .|++||+++++....+....                                                  ...+...+.+
T Consensus       766 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~  845 (1249)
T 3sfz_A          766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY  845 (1249)
T ss_dssp             EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCE
T ss_pred             eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEE
Confidence            99999998876543322100                                                  0023346788


Q ss_pred             EEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          191 IAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       191 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      ++|+|++.++++|+.+|.|++||.........+    ..|.+.|.+++|+|+|++|++++.||.|++|++.
T Consensus       846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADC----RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             EEECSSTTEEEEECSSSCEEEEETTTTEEEEEE----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec----CCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence            999999999999999999999999887766544    4689999999999999999999999999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.5e-35  Score=242.62  Aligned_cols=255  Identities=17%  Similarity=0.243  Sum_probs=197.4

Q ss_pred             ceeeCCC----C---CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCC-----eeeEEEEEEe----cCCCee-EEE
Q 024451            2 TCAFSPT----G---QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-----KGYVSCCQYV----PDEDTH-LIT   64 (267)
Q Consensus         2 ~~~~~~~----g---~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~~~~~~-l~s   64 (267)
                      +++|+|+    |   ++|++++.|++|++|++......  .......+.+|     ...|.++.|+    |++ .+ |++
T Consensus        67 ~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~  143 (397)
T 1sq9_A           67 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET--KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVA  143 (397)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT--CCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEE
T ss_pred             EEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc--ccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEE
Confidence            5789998    9   99999999999999998753211  01114566778     6999999999    865 56 999


Q ss_pred             eeCCCeEEEEeCCC------CeeEE-----EeCC--ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce
Q 024451           65 SSGDQTCVLWDITT------GLRTS-----VFGG--EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV  131 (267)
Q Consensus        65 ~~~d~~v~iwd~~~------~~~~~-----~~~~--~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~  131 (267)
                      ++.|+.|++||+.+      +....     .+..  .....|...+.++++++..  ++++++.|+.|++||++. ...+
T Consensus       144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~-~~~~  220 (397)
T 1sq9_A          144 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELST-LRPL  220 (397)
T ss_dssp             EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTT-TEEE
T ss_pred             EeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCC-Ccee
Confidence            99999999999987      43322     2210  0013477889999999754  889999999999999975 4466


Q ss_pred             EEeec---c---ccceeEEEEecCCCEEEEeeCC---CcEEEEeCCCCeeeEEEEeecC--------CCCCCcEEEEEEc
Q 024451          132 RTFHG---H---EGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHG--------ENEIPHVTSIAFS  194 (267)
Q Consensus       132 ~~~~~---~---~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~v~~~~~s  194 (267)
                      ..+..   |   ...|.+++|+|++++|++++.|   +.|++||+++++.+..+.....        ..+...|.+++|+
T Consensus       221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  300 (397)
T 1sq9_A          221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN  300 (397)
T ss_dssp             EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred             EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEEC
Confidence            77777   8   8999999999999999999999   9999999998876655432100        0034579999999


Q ss_pred             cCCCEEEEEEeCCeEEEEeCCccceeeecccc--cCCc---------------cceEEEEEECCCC----------CeEE
Q 024451          195 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL--QNSH---------------EGRITCLGLSADG----------SALC  247 (267)
Q Consensus       195 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~--~~~~---------------~~~v~~~~~~p~~----------~~l~  247 (267)
                      |++++|++++.||.|++||+...+.+..+...  ...|               ..+|.+++|+|++          ++|+
T Consensus       301 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~  380 (397)
T 1sq9_A          301 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC  380 (397)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE
T ss_pred             CCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE
Confidence            99999999999999999999887766554200  0034               8899999999998          7999


Q ss_pred             EeECCCcEEEEecCc
Q 024451          248 TGSWDTNLKIWAFGG  262 (267)
Q Consensus       248 sgs~dg~i~~w~~~~  262 (267)
                      +|+.||.|++|++.+
T Consensus       381 s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          381 CVCLDRSIRWFREAG  395 (397)
T ss_dssp             EEETTTEEEEEEEEC
T ss_pred             EecCCCcEEEEEcCC
Confidence            999999999999753

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.6e-35  Score=240.48  Aligned_cols=243  Identities=16%  Similarity=0.214  Sum_probs=186.1

Q ss_pred             ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+| ++++|++++.|++|++||+...     .........+|...|.+++|+|++ .+|++++.|+.|++||+. +.
T Consensus       123 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~  195 (383)
T 3ei3_B          123 GMKFNQFNTNQLFVSSIRGATTLRDFSGS-----VIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GH  195 (383)
T ss_dssp             EEEEETTEEEEEEEEETTTEEEEEETTSC-----EEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SC
T ss_pred             EEEeCCCCCCEEEEEeCCCEEEEEECCCC-----ceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CC
Confidence            578999 7899999999999999998641     111222234566889999999976 589999999999999995 44


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc---ccceEEeeccccceeEEEEec-CCCEEEEe
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA---SRAVRTFHGHEGDVNTVKFFP-DGNRFGTG  156 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  156 (267)
                      ....+     .+|...|.+++|++....++++++.|+.|++||++..   ......+ +|...|.+++|+| ++++|+++
T Consensus       196 ~~~~~-----~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~  269 (383)
T 3ei3_B          196 EIFKE-----KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTT  269 (383)
T ss_dssp             EEEEE-----ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEE
T ss_pred             EEEEe-----ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEE
Confidence            44443     3688999999999765548999999999999998752   2233334 7999999999999 99999999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEEeecCC--CCC----------CcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc
Q 024451          157 SDDGTCRLFDIRTGHQLQVYYQQHGE--NEI----------PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG  224 (267)
Q Consensus       157 ~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~----------~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~  224 (267)
                      +.|+.|++||+++++....+..+...  .+.          ..+..++|+|++++  +|+.||.|++||+.+++.+..+.
T Consensus       270 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~  347 (383)
T 3ei3_B          270 DQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR  347 (383)
T ss_dssp             ESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC
T ss_pred             cCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec
Confidence            99999999999987765544332110  011          23444566666666  66789999999998887765553


Q ss_pred             cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          225 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       225 ~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .  ..|.+.+.+++|+|++++|++|+ ||.|++|++..
T Consensus       348 ~--~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          348 D--PNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             B--TTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             C--CCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            1  12567788889999999999998 99999999753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=227.29  Aligned_cols=233  Identities=22%  Similarity=0.355  Sum_probs=191.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++++|++++.|+.+++|++.....    ......+.+|...|.++.|.+   .++++++.|+.|++||  .+..
T Consensus        64 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~d~~i~~~d--~~~~  134 (313)
T 3odt_A           64 SVCYDSEKELLLFGGKDTMINGVPLFATSG----EDPLYTLIGHQGNVCSLSFQD---GVVISGSWDKTAKVWK--EGSL  134 (313)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTCCTT----SCC-CEECCCSSCEEEEEEET---TEEEEEETTSEEEEEE--TTEE
T ss_pred             EEEECCCCCEEEEecCCCeEEEEEeeecCC----CCcccchhhcccCEEEEEecC---CEEEEEeCCCCEEEEc--CCcE
Confidence            578999999999999999999999875322    124556789999999999943   4799999999999999  3444


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec-cccceeEEEEecCCCEEEEeeCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ...+     ..|...+.++.+.+.+...+++++.|+.|++||..   .....+.. |...+.++.|+|++. +++++.|+
T Consensus       135 ~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg  205 (313)
T 3odt_A          135 VYNL-----QAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDG  205 (313)
T ss_dssp             EEEE-----ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTS
T ss_pred             EEec-----ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCC
Confidence            4333     35888999999998677889999999999999943   34555555 889999999999988 99999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      .|++||+++++.+..+..     +...+.+++|+|++ .+++++.||.|++||+...+....+    ..|..+|.+++|+
T Consensus       206 ~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~i~~~~~~  275 (313)
T 3odt_A          206 LIKLVDMHTGDVLRTYEG-----HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI----TLPAISIWSVDCM  275 (313)
T ss_dssp             EEEEEETTTCCEEEEEEC-----CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE----ECSSSCEEEEEEC
T ss_pred             eEEEEECCchhhhhhhhc-----CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE----eccCceEEEEEEc
Confidence            999999998877655432     23469999999999 5889999999999999888766554    4577899999999


Q ss_pred             CCCCeEEEeECCCcEEEEecCce
Q 024451          241 ADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       241 p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      |+++ +++++.||.|++|++..-
T Consensus       276 ~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          276 SNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             TTSC-EEEEETTSCEEEEESCGG
T ss_pred             cCCC-EEEEeCCCcEEEEeCCCC
Confidence            9998 556899999999998653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.9e-34  Score=234.72  Aligned_cols=244  Identities=9%  Similarity=0.086  Sum_probs=190.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCe-eEEEeeCCCeEEEEeC-CCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT-HLITSSGDQTCVLWDI-TTG   79 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~d~~v~iwd~-~~~   79 (267)
                      +++|+|++++|++++.|+.|++|++.....    ......+.+|...|.+++|+|++ . +|++++.|+.|++||+ .++
T Consensus        16 ~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~   90 (342)
T 1yfq_A           16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAK----NVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEEEETTTT----EEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSSS
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEEEeCCCCc----cccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccCC
Confidence            678999999999999999999999875321    11234456899999999999974 6 7999999999999999 876


Q ss_pred             eeEEEeCCccccC--CccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc--------ccceEEeeccccceeEEEEecC
Q 024451           80 LRTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--------SRAVRTFHGHEGDVNTVKFFPD  149 (267)
Q Consensus        80 ~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~i~~~~~~~~  149 (267)
                      .. ..+     .+  |...|.++++++  +.++++++.|+.|++||++..        ......+. |...+.+++|+|+
T Consensus        91 ~~-~~~-----~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~  161 (342)
T 1yfq_A           91 SF-QAL-----TNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS  161 (342)
T ss_dssp             SE-EEC-----BSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred             ce-Eec-----cccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence            54 222     35  889999999997  668899999999999998630        22344444 7889999999988


Q ss_pred             CCEEEEeeCCCcEEEEeCCC-CeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEEEeCCeEEEEeCCcc------ceee
Q 024451          150 GNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLA------KVVL  221 (267)
Q Consensus       150 ~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~------~~~~  221 (267)
                      +  +++++.|+.|++||+++ +........   ......+.+++|+| +++++++|+.||.+++|+....      +...
T Consensus       162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~  236 (342)
T 1yfq_A          162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEE---SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             E--EEEEESTTEEEEEESSCCTTCCCEEEE---CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             c--EEEEeCCCeEEEEECCccccccceeee---cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence            6  99999999999999987 543222111   12234689999999 9999999999999999998765      3332


Q ss_pred             eccccc-----CCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          222 NLGSLQ-----NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       222 ~~~~~~-----~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      .+....     ..|...|.+++|+|++++|++|+.||.|++|++....
T Consensus       237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence            221110     0234599999999999999999999999999986443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-33  Score=234.43  Aligned_cols=243  Identities=17%  Similarity=0.295  Sum_probs=190.1

Q ss_pred             ceeeCCCCC-eEEEccCCCeEEEeec----CCCCCC---CCCCcccccc------cCCeeeEEEEEEecCCCeeEEEeeC
Q 024451            2 TCAFSPTGQ-SVACGGLDSVCSIFNL----NSPTDK---DGNLPVSRML------SGHKGYVSCCQYVPDEDTHLITSSG   67 (267)
Q Consensus         2 ~~~~~~~g~-~l~~~~~d~~v~~w~~----~~~~~~---~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~~~   67 (267)
                      +++|+|+|+ +|++++.|+.|++|++    ......   .....+...+      .+|.+.|++++|+|++ .+|++++.
T Consensus        50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~  128 (425)
T 1r5m_A           50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG-NSIVTGVE  128 (425)
T ss_dssp             EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS-SEEEEEET
T ss_pred             EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC-CEEEEEeC
Confidence            688999999 9999999999999999    542200   0000111112      2378899999999975 58999999


Q ss_pred             CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc------------------
Q 024451           68 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR------------------  129 (267)
Q Consensus        68 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~------------------  129 (267)
                      |+.|++|| .++.....+     .+|...+.+++|++ +++++++++.|+.|++||++....                  
T Consensus       129 dg~i~i~~-~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  201 (425)
T 1r5m_A          129 NGELRLWN-KTGALLNVL-----NFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN  201 (425)
T ss_dssp             TSCEEEEE-TTSCEEEEE-----CCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred             CCeEEEEe-CCCCeeeec-----cCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence            99999999 444444444     36888999999986 456788999999999999853211                  


Q ss_pred             -------------------------------------ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCee
Q 024451          130 -------------------------------------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  172 (267)
Q Consensus       130 -------------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  172 (267)
                                                           ....+.+|...|.+++|+|+++++++++.|+.|++||+++++.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  281 (425)
T 1r5m_A          202 HSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS  281 (425)
T ss_dssp             ----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred             ccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence                                                 1123456788899999999999999999999999999998776


Q ss_pred             eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC
Q 024451          173 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD  252 (267)
Q Consensus       173 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d  252 (267)
                      ...+..     +...+.+++|+|++ .+++++.||.|++||+...+.+..+    ..|...|.+++|+|++++|++++.|
T Consensus       282 ~~~~~~-----~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~d  351 (425)
T 1r5m_A          282 QNCFYG-----HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS----IVDGVPIFAGRISQDGQKYAVAFMD  351 (425)
T ss_dssp             SEEECC-----CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE----ECTTCCEEEEEECTTSSEEEEEETT
T ss_pred             ceEecC-----CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec----ccCCccEEEEEEcCCCCEEEEEECC
Confidence            655422     23469999999999 9999999999999999887766544    3578899999999999999999999


Q ss_pred             CcEEEEecCc
Q 024451          253 TNLKIWAFGG  262 (267)
Q Consensus       253 g~i~~w~~~~  262 (267)
                      |.|++|++..
T Consensus       352 g~i~i~~~~~  361 (425)
T 1r5m_A          352 GQVNVYDLKK  361 (425)
T ss_dssp             SCEEEEECHH
T ss_pred             CeEEEEECCC
Confidence            9999999754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-35  Score=248.43  Aligned_cols=252  Identities=13%  Similarity=0.197  Sum_probs=188.3

Q ss_pred             ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC---
Q 024451            2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT---   77 (267)
Q Consensus         2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~---   77 (267)
                      +++|+| ++++|++|+.|++|++||+....... ...... ..+|...|.+++|+|++ .+|++++.|++|++||++   
T Consensus        68 ~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~  144 (437)
T 3gre_A           68 SSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSL-TYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQ  144 (437)
T ss_dssp             EEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSE-EEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEE
T ss_pred             EEEECCCCCCEEEEecCCceEEEeECcccccCc-ccceee-eccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEecccc
Confidence            678999 99999999999999999986411111 011111 22699999999999965 589999999999999994   


Q ss_pred             CCeeEEEeCCc------ccc-CCccceEEEEEe-CCCCeEEEEecCCCeEEEEeCCCcccceEEeec--cccceeEEEEe
Q 024451           78 TGLRTSVFGGE------FQS-GHTADVLSVSIS-GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFF  147 (267)
Q Consensus        78 ~~~~~~~~~~~------~~~-~~~~~i~~~~~~-~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~  147 (267)
                      ++.........      +.. ++...+.++.+. .+++.++++++.|+.|++||++. .+.+..+.+  |...|.+++|+
T Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s  223 (437)
T 3gre_A          145 QESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT-LERLQIIENSPRHGAVSSICID  223 (437)
T ss_dssp             ETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT-CCEEEEEECCGGGCCEEEEEEC
T ss_pred             CCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CeeeEEEccCCCCCceEEEEEC
Confidence            33322221110      000 145556666633 23567899999999999999975 445666776  88999999999


Q ss_pred             cCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEc----cCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451          148 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS----ISGRLLFAGYSNGDCYVWDTLLAKVVLNL  223 (267)
Q Consensus       148 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  223 (267)
                      |+++++++++.|+.|++||+++++.+..+...    +...|.+++|+    +++.+|++|+.||.|++||+..++.+..+
T Consensus       224 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  299 (437)
T 3gre_A          224 EECCVLILGTTRGIIDIWDIRFNVLIRSWSFG----DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAF  299 (437)
T ss_dssp             TTSCEEEEEETTSCEEEEETTTTEEEEEEBCT----TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEEcCCccEEEEEecC----CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence            99999999999999999999987766544211    22368999665    46779999999999999999876654332


Q ss_pred             ccc--------------------cC--CccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          224 GSL--------------------QN--SHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       224 ~~~--------------------~~--~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ...                    ..  .|...|.+++|+ ++++|++|+.||.|++|++..
T Consensus       300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          300 INSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             ESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC
T ss_pred             EcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC
Confidence            210                    01  277889999999 779999999999999999754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.1e-34  Score=240.09  Aligned_cols=249  Identities=16%  Similarity=0.233  Sum_probs=195.3

Q ss_pred             ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+| ++++|++++.||+|++||+...............+.+|...|.+++|+|++..+|++++.|++|++||+.++.
T Consensus        86 ~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  165 (402)
T 2aq5_A           86 DIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA  165 (402)
T ss_dssp             EEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC
Confidence            578999 9999999999999999998764221111124566789999999999999875689999999999999999987


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe-eccccc-eeEEEEecCCCEEEEe--
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGD-VNTVKFFPDGNRFGTG--  156 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~--  156 (267)
                      ....+.   ..+|...|.+++|++ +++++++++.|+.|++||++.. .....+ .+|.+. +.++.|+|++++++++  
T Consensus       166 ~~~~~~---~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~  240 (402)
T 2aq5_A          166 AVLTLG---PDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS  240 (402)
T ss_dssp             EEEEEC---TTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEEEEEC
T ss_pred             ccEEEe---cCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEEEecc
Confidence            766552   035888999999997 5678899999999999999854 345555 678765 8999999999999999  


Q ss_pred             -eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE-EEeCCeEEEEeCCccce-eeecccccCCccce
Q 024451          157 -SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGR  233 (267)
Q Consensus       157 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-g~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~  233 (267)
                       +.|+.|++||+++.+........   .....+.+++|+|+++++++ |+.||.|++||+...+. +..+...  .|..+
T Consensus       241 ~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~--~~~~~  315 (402)
T 2aq5_A          241 RMSERQVALWDTKHLEEPLSLQEL---DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF--SSKES  315 (402)
T ss_dssp             TTCCEEEEEEETTBCSSCSEEEEC---CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE--CCSSC
T ss_pred             CCCCceEEEEcCccccCCceEEec---cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc--ccCCc
Confidence             79999999999886642222221   12235899999999999965 55799999999887663 2222211  26689


Q ss_pred             EEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          234 ITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       234 v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      |.+++|+|++.++++  .|+.+++|++..
T Consensus       316 v~~~~~sp~~~~~~s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          316 QRGMGYMPKRGLEVN--KCEIARFYKLHE  342 (402)
T ss_dssp             CSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred             ccceEEeccccccee--cceeEEEEEcCC
Confidence            999999999999875  467999998743

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-33  Score=234.60  Aligned_cols=232  Identities=21%  Similarity=0.355  Sum_probs=189.9

Q ss_pred             eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451            5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS   83 (267)
Q Consensus         5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~   83 (267)
                      +++++..+++++.|+.|++||+....       ....+ ..|...|.+++|+|++ .+|++|+.|+.|++||+.++....
T Consensus        99 ~~~s~~~l~~~~~d~~v~lw~~~~~~-------~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~  170 (401)
T 4aez_A           99 LDWSNLNVVAVALERNVYVWNADSGS-------VSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTKLR  170 (401)
T ss_dssp             EEECTTSEEEEEETTEEEEEETTTCC-------EEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEE
T ss_pred             EeecCCCEEEEECCCeEEEeeCCCCc-------EeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEEECcCCeEEE
Confidence            33445678899999999999986532       22223 3489999999999965 589999999999999999887766


Q ss_pred             EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEE
Q 024451           84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR  163 (267)
Q Consensus        84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  163 (267)
                      .+     .+|...+.++.+++   +++++++.|+.|++||++........+.+|.+.|.+++|+|++++|++++.|+.|+
T Consensus       171 ~~-----~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~  242 (401)
T 4aez_A          171 TM-----AGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ  242 (401)
T ss_dssp             EE-----CCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             Ee-----cCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence            65     36888999999953   58899999999999999865666778889999999999999999999999999999


Q ss_pred             EEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEE--eCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          164 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       164 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      +||+++++....+..     +...+.+++|+|++. ++++|+  .||.|++||+...+....+     .+...|.+++|+
T Consensus       243 iwd~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-----~~~~~v~~~~~s  312 (401)
T 4aez_A          243 IWDARSSIPKFTKTN-----HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-----DAGSQVTSLIWS  312 (401)
T ss_dssp             EEETTCSSEEEEECC-----CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-----ECSSCEEEEEEC
T ss_pred             EccCCCCCccEEecC-----CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-----eCCCcEEEEEEC
Confidence            999998776554322     234689999999765 555554  6999999999887766544     356789999999


Q ss_pred             CCCCeEEE--eECCCcEEEEecCc
Q 024451          241 ADGSALCT--GSWDTNLKIWAFGG  262 (267)
Q Consensus       241 p~~~~l~s--gs~dg~i~~w~~~~  262 (267)
                      |++++|++  |+.||.|++|++..
T Consensus       313 ~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          313 PHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             SSSSEEEEEECTTTCEEEEEEEET
T ss_pred             CCCCeEEEEeecCCCcEEEEecCC
Confidence            99999999  44899999999755

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.6e-35  Score=240.10  Aligned_cols=246  Identities=15%  Similarity=0.204  Sum_probs=177.8

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++++|++++.|++|++||+....    .......+.+|...|.+++|+|++ .+|++++.|+.|++||++++..
T Consensus        60 ~~~~s~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~  134 (377)
T 3dwl_C           60 CVDWAPKSNRIVTCSQDRNAYVYEKRPDG----TWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQEND  134 (377)
T ss_dssp             EEEECTTTCCEEEEETTSSEEEC----------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEEcCCCC----ceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCccc
Confidence            57899999999999999999999987532    122345677899999999999965 5899999999999999987652


Q ss_pred             ---EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc-----------------ccceEEeeccccce
Q 024451           82 ---TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-----------------SRAVRTFHGHEGDV  141 (267)
Q Consensus        82 ---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-----------------~~~~~~~~~~~~~i  141 (267)
                         ...+.    ..|...|.+++|++ +++++++++.|+.|++||++..                 ......+ +|...|
T Consensus       135 ~~~~~~~~----~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v  208 (377)
T 3dwl_C          135 WWVSKHLK----RPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWV  208 (377)
T ss_dssp             CCCCEEEC----SSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSE
T ss_pred             ceeeeEee----cccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceE
Confidence               22321    23889999999997 5678999999999999998421                 2234445 899999


Q ss_pred             eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc---
Q 024451          142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK---  218 (267)
Q Consensus       142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~---  218 (267)
                      .+++|+|++++|++++.|+.|++||+++++....... ....+...+.+++|+|++++|++|+.++.+ +|+.....   
T Consensus       209 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~  286 (377)
T 3dwl_C          209 HAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALI-TVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAH  286 (377)
T ss_dssp             EEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECC-CEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeE-eecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEE
Confidence            9999999999999999999999999998876211111 011233569999999999999999766655 66653111   


Q ss_pred             --eee-------------------------------------------ecccccCCccceEEEEEECCCC-C---eEEEe
Q 024451          219 --VVL-------------------------------------------NLGSLQNSHEGRITCLGLSADG-S---ALCTG  249 (267)
Q Consensus       219 --~~~-------------------------------------------~~~~~~~~~~~~v~~~~~~p~~-~---~l~sg  249 (267)
                        .+.                                           ........|...|+++++.+.. .   .|+||
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~  366 (377)
T 3dwl_C          287 TRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSS  366 (377)
T ss_dssp             SBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             EeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEee
Confidence              000                                           0001122389999999976543 3   69999


Q ss_pred             ECCCcEEEEec
Q 024451          250 SWDTNLKIWAF  260 (267)
Q Consensus       250 s~dg~i~~w~~  260 (267)
                      |.||.|++|++
T Consensus       367 g~Dg~i~iWdl  377 (377)
T 3dwl_C          367 GTDGRVVLWTL  377 (377)
T ss_dssp             ETTSEEEEECC
T ss_pred             cCCCcEEEecC
Confidence            99999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-33  Score=224.59  Aligned_cols=230  Identities=19%  Similarity=0.289  Sum_probs=189.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-   80 (267)
                      +++| |++++|++++.||.|++||+...       .....+..|...|.+++|+|++ .++++++.|+.|++|++.... 
T Consensus        23 ~~~~-~~~~~l~s~~~dg~v~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~   93 (313)
T 3odt_A           23 DVVA-VDDSKVASVSRDGTVRLWSKDDQ-------WLGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFATSG   93 (313)
T ss_dssp             EEEE-EETTEEEEEETTSEEEEEEESSS-------EEEEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEEEETTCCTT
T ss_pred             EEEe-cCCCEEEEEEcCCcEEEEECCCC-------EEEEEeecCCccEEEEEECCCC-CEEEEecCCCeEEEEEeeecCC
Confidence            5678 99999999999999999998542       2455677899999999999975 589999999999999987542 


Q ss_pred             --eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEee
Q 024451           81 --RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGS  157 (267)
Q Consensus        81 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~  157 (267)
                        ....+     .+|...+.++.+.   +.++++++.|+.|++||.   ......+..|...+.++.|.| +++++++++
T Consensus        94 ~~~~~~~-----~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  162 (313)
T 3odt_A           94 EDPLYTL-----IGHQGNVCSLSFQ---DGVVISGSWDKTAKVWKE---GSLVYNLQAHNASVWDAKVVSFSENKFLTAS  162 (313)
T ss_dssp             SCC-CEE-----CCCSSCEEEEEEE---TTEEEEEETTSEEEEEET---TEEEEEEECCSSCEEEEEEEETTTTEEEEEE
T ss_pred             CCcccch-----hhcccCEEEEEec---CCEEEEEeCCCCEEEEcC---CcEEEecccCCCceeEEEEccCCCCEEEEEE
Confidence              22222     4688899999994   357899999999999993   345677788999999999998 899999999


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  237 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  237 (267)
                      .|+.|++||..  +....+.    ..+...+.+++|+|++. +++++.||.|++||+...+.+..+    ..|.+.|.++
T Consensus       163 ~d~~i~i~d~~--~~~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~i~~~  231 (313)
T 3odt_A          163 ADKTIKLWQND--KVIKTFS----GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY----EGHESFVYCI  231 (313)
T ss_dssp             TTSCEEEEETT--EEEEEEC----SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEE
T ss_pred             CCCCEEEEecC--ceEEEEe----ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh----hcCCceEEEE
Confidence            99999999943  3333322    11345799999999998 999999999999999887766554    4688999999


Q ss_pred             EECCCCCeEEEeECCCcEEEEecCce
Q 024451          238 GLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       238 ~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      +|+|++ .|++++.||.|++|++...
T Consensus       232 ~~~~~~-~l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          232 KLLPNG-DIVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             EECTTS-CEEEEETTSEEEEECTTTC
T ss_pred             EEecCC-CEEEEecCCEEEEEECCCC
Confidence            999999 6889999999999997543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=231.01  Aligned_cols=241  Identities=20%  Similarity=0.293  Sum_probs=184.6

Q ss_pred             ceeeCCC---CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451            2 TCAFSPT---GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         2 ~~~~~~~---g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      +++|+|+   |++|++++.||.|++||+....     ......+.+|...|.++.|+|++ .+|++++.|+.|++||+.+
T Consensus        44 ~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~  117 (368)
T 3mmy_A           44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-----QTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSS  117 (368)
T ss_dssp             EEEECCTTSSSEEEEEEETTSEEEEEEECTTS-----CEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT
T ss_pred             EEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-----ceeEEEeccccCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCC
Confidence            6889999   6999999999999999987521     12346778999999999999965 5899999999999999998


Q ss_pred             CeeEEEeCCccccCCccceEEEEEe-CCCCeEEEEecCCCeEEEEeCCCcccceEEeecc--------------------
Q 024451           79 GLRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--------------------  137 (267)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------------  137 (267)
                      +.....      .+|...+.++.|. .++++++++++.|+.|++||++... ....+..|                    
T Consensus       118 ~~~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 3mmy_A          118 NQAIQI------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVLQLPERCYCADVIYPMAVVATAER  190 (368)
T ss_dssp             TEEEEE------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEEECSSCEEEEEEETTEEEEEEGGG
T ss_pred             CCceee------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEEecCCCceEEEecCCeeEEEeCCC
Confidence            876543      3588899999993 2456789999999999999987533 23333222                    


Q ss_pred             ---------------------ccceeEEEEecCCCE----EEEeeCCCcEEEEeCCCCe---eeEEEEeecCC-------
Q 024451          138 ---------------------EGDVNTVKFFPDGNR----FGTGSDDGTCRLFDIRTGH---QLQVYYQQHGE-------  182 (267)
Q Consensus       138 ---------------------~~~i~~~~~~~~~~~----l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~-------  182 (267)
                                           ...+.++.+.++...    +++++.|+.|++||++...   ....+..+...       
T Consensus       191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (368)
T 3mmy_A          191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP  270 (368)
T ss_dssp             CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCC
T ss_pred             cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccc
Confidence                                 123445555554443    9999999999999998763   22222211100       


Q ss_pred             CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       183 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      .+...|.+++|+|++++|++|+.||.|++||+...+.+..+    ..|..+|.+++|+|+|++|++|+.|+..+.|.
T Consensus       271 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS----EQLDQPISACCFNHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             EEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC----CCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred             ccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe----cCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence            01115999999999999999999999999999887776554    46889999999999999999999988655554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.6e-34  Score=240.02  Aligned_cols=212  Identities=15%  Similarity=0.205  Sum_probs=169.5

Q ss_pred             cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451           39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  118 (267)
Q Consensus        39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~  118 (267)
                      .+...+|...|+|++|+|.+..+||+|+.||+|+|||+.++.....+.   ..+|...|.+++|+|.++.+|++++.|++
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~---~~gH~~~V~~l~f~p~~~~~l~s~s~D~~  188 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK---GIGAGGSITGLKFNPLNTNQFYASSMEGT  188 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC---CCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE---ccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence            344567888999999999877789999999999999998775444332   24799999999999877789999999999


Q ss_pred             EEEEeCCCcccceEEee---ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc
Q 024451          119 ARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  195 (267)
Q Consensus       119 i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  195 (267)
                      |++||++..  ....+.   .+...+.+++|+|++++|++|+.|+.|++||++.. .+..+     ..+...|.+++|+|
T Consensus       189 v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~-----~~h~~~v~~v~~~p  260 (435)
T 4e54_B          189 TRLQDFKGN--ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNL-----RMHKKKVTHVALNP  260 (435)
T ss_dssp             EEEEETTSC--EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCS-----BCCSSCEEEEEECT
T ss_pred             EEEeeccCC--ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEE-----ecccceEEeeeecC
Confidence            999998742  222222   23445789999999999999999999999999753 32221     23345799999999


Q ss_pred             CCC-EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          196 SGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       196 ~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ++. ++++|+.|+.|++||++..+....+. ....|...|.+++|+|+|++|++|+.||.|+||++..
T Consensus       261 ~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~-~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          261 CCDWFLATASVDQTVKIWDLRQVRGKASFL-YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             TCSSEEEEEETTSBCCEEETTTCCSSSCCS-BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred             CCceEEEEecCcceeeEEecccccccceEE-EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence            876 77889999999999987765443322 1246889999999999999999999999999999754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-34  Score=231.72  Aligned_cols=237  Identities=11%  Similarity=0.105  Sum_probs=174.8

Q ss_pred             eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEE
Q 024451            5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV   84 (267)
Q Consensus         5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~   84 (267)
                      +.+++.+|++|+.||+|++||+....       ....+.  ...|.++.|+|.    +++++.|++|++|+.........
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~-------~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~  110 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSK-------TITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILD  110 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSS-------CEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCc-------EEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEee
Confidence            45688999999999999999986532       222222  466777788875    89999999999998764221111


Q ss_pred             eC-----CccccCCccceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccceEEe-eccccceeEEEEecCCCEEEEee
Q 024451           85 FG-----GEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus        85 ~~-----~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~  157 (267)
                      +.     .....+|...|.+++++|. +++++++++.|+.|++||++... ..... ..|...+.+++|+|+++++++|+
T Consensus       111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~~pdg~~lasg~  189 (343)
T 3lrv_A          111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-QYIVHSAKSDVEYSSGVLHKDSLLLALYS  189 (343)
T ss_dssp             TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-EEEEECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred             cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-EEEEEecCCCCceEEEEECCCCCEEEEEc
Confidence            00     0112356678999999861 45688999999999999998544 34333 34556799999999999999999


Q ss_pred             CCCcEEEEeCCCCeee-EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceE--
Q 024451          158 DDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI--  234 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--  234 (267)
                      .|+.|++||+++++.. ..+..    .+...|.+++|+|++.+|++++ ++.|++||++..+.+..+..+ ..|...+  
T Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~----~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~  263 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQASSRFPV----DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY-TIPEFKTGT  263 (343)
T ss_dssp             TTSCEEEEESSCTTSCCEECCC----CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC-BC-----CC
T ss_pred             CCCEEEEEECCCCCCCccEEec----cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc-ccccccccc
Confidence            9999999999988765 33321    1345799999999999999999 559999999887655433221 1133333  


Q ss_pred             EEEEECCCCCeEEEeEC-CCcEEEEecC
Q 024451          235 TCLGLSADGSALCTGSW-DTNLKIWAFG  261 (267)
Q Consensus       235 ~~~~~~p~~~~l~sgs~-dg~i~~w~~~  261 (267)
                      .+++|+|+|++|++++. |+.+++|++.
T Consensus       264 ~~~~~~~~g~~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          264 VTYDIDDSGKNMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence            46999999999999998 9999999874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.3e-34  Score=230.98  Aligned_cols=213  Identities=19%  Similarity=0.273  Sum_probs=163.8

Q ss_pred             ccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCCe
Q 024451           40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDST  118 (267)
Q Consensus        40 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~  118 (267)
                      ..+.+|.+.|++++|+|++ .+|++|+.|++|++||+.++......   ...+|...|.+++|+++ +++++++++.|++
T Consensus         7 ~~~~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~~~~~~---~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~   82 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQILIA---DLRGHEGPVWQVAWAHPMYGNILASCSYDRK   82 (316)
T ss_dssp             -------CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTEEEEEE---EEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred             eecccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCCcEEEE---EEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence            3467999999999999975 58999999999999999876432211   12479999999999754 4678999999999


Q ss_pred             EEEEeCCCcc-cceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc
Q 024451          119 ARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  195 (267)
Q Consensus       119 i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  195 (267)
                      |++||++... .....+.+|...|.+++|+|+  +.+|++++.|++|++||++.+......  .....+...+.+++|+|
T Consensus        83 v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~--~~~~~h~~~v~~~~~~~  160 (316)
T 3bg1_A           83 VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK--KINNAHTIGCNAVSWAP  160 (316)
T ss_dssp             EEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC--CBTTSSSSCBCCCEECC
T ss_pred             EEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee--eeeccccCCcceEEEcc
Confidence            9999987532 245567789999999999997  789999999999999999875322111  11223445688899998


Q ss_pred             C-----------------CCEEEEEEeCCeEEEEeCCccc---eeeecccccCCccceEEEEEECCCC----CeEEEeEC
Q 024451          196 S-----------------GRLLFAGYSNGDCYVWDTLLAK---VVLNLGSLQNSHEGRITCLGLSADG----SALCTGSW  251 (267)
Q Consensus       196 ~-----------------~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~sgs~  251 (267)
                      +                 +.+|++|+.|+.|++||.....   ....+    ..|...|.+++|+|++    ++||+|+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l----~~h~~~V~~v~~sp~~~~~~~~las~s~  236 (316)
T 3bg1_A          161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL----EAHSDWVRDVAWAPSIGLPTSTIASCSQ  236 (316)
T ss_dssp             CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC----BCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred             ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec----ccCCCceEEEEecCCCCCCCceEEEEcC
Confidence            7                 4689999999999999986432   22222    4699999999999986    89999999


Q ss_pred             CCcEEEEecCc
Q 024451          252 DTNLKIWAFGG  262 (267)
Q Consensus       252 dg~i~~w~~~~  262 (267)
                      ||+|++|++..
T Consensus       237 D~~v~iw~~~~  247 (316)
T 3bg1_A          237 DGRVFIWTCDD  247 (316)
T ss_dssp             TCEEEEEECSS
T ss_pred             CCeEEEEEccC
Confidence            99999998754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.5e-32  Score=232.78  Aligned_cols=236  Identities=20%  Similarity=0.349  Sum_probs=190.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+|++ .|++++.||+|++||+...       .....+.+|...|.+++|.+. +..++++++.|++|++||+.++.
T Consensus       167 ~l~~~~~~-~l~s~s~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~  238 (464)
T 3v7d_B          167 ALKYAHGG-ILVSGSTDRTVRVWDIKKG-------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES  238 (464)
T ss_dssp             EEEECSTT-EEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCC
T ss_pred             EEEEcCCC-EEEEEeCCCCEEEEECCCC-------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCc
Confidence            57889888 8999999999999998652       255678899999999999863 44789999999999999998764


Q ss_pred             eEEEeC------------------CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecccccee
Q 024451           81 RTSVFG------------------GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVN  142 (267)
Q Consensus        81 ~~~~~~------------------~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~  142 (267)
                      ......                  .....+|...+.++...   +.++++++.|+.|++||++. .+....+.+|...|.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~  314 (464)
T 3v7d_B          239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH---GNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIY  314 (464)
T ss_dssp             CC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEE
T ss_pred             ccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC---CCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCEE
Confidence            321110                  01224677888887543   46889999999999999975 456777889999999


Q ss_pred             EEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeee
Q 024451          143 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN  222 (267)
Q Consensus       143 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~  222 (267)
                      ++.|+|+++++++++.|+.|++||+++++.+..+..     +...+.+++|+  +.++++|+.||.|++||+...+....
T Consensus       315 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~  387 (464)
T 3v7d_B          315 STIYDHERKRCISASMDTTIRIWDLENGELMYTLQG-----HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS  387 (464)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-----CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee
Confidence            999999999999999999999999999887665432     33468999987  58999999999999999987665433


Q ss_pred             cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          223 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       223 ~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .     .|...+..++|+|++++|++|+ ||.|++|++..
T Consensus       388 ~-----~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~  421 (464)
T 3v7d_B          388 Y-----HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS  421 (464)
T ss_dssp             E-----ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred             e-----cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence            2     3556677889999999999998 99999999754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.8e-33  Score=226.08  Aligned_cols=238  Identities=25%  Similarity=0.375  Sum_probs=177.4

Q ss_pred             EccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCC
Q 024451           14 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH   93 (267)
Q Consensus        14 ~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~   93 (267)
                      +|-..|+-.+|....   ...++.+..+++||++.|++++|+|++..+|+|||.|++|++||+.+.............+|
T Consensus         9 ~g~d~g~~~~~~~~~---~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h   85 (340)
T 4aow_A            9 SGVDLGTENLYFQSM---MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH   85 (340)
T ss_dssp             --------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC
T ss_pred             cccCCCCccEEEEEc---cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC
Confidence            333445555543322   12224466689999999999999998767999999999999999976532211111223579


Q ss_pred             ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeee
Q 024451           94 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL  173 (267)
Q Consensus        94 ~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  173 (267)
                      ...|.+++|++ +++++++++.|+.|++|+.... ........+...+....++++++++++++.|+.+++||+......
T Consensus        86 ~~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~  163 (340)
T 4aow_A           86 SHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTG-TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY  163 (340)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred             CCCEEEEEECC-CCCEEEEEcccccceEEeeccc-ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE
Confidence            99999999996 5678999999999999998743 345555667788899999999999999999999999999765543


Q ss_pred             EEEEeecCCCCCCcEEEEEEccCC--CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC
Q 024451          174 QVYYQQHGENEIPHVTSIAFSISG--RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  251 (267)
Q Consensus       174 ~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~  251 (267)
                      ...    ...+...+..++|++++  .++++++.|+.|++||....+....+    ..|.++|.+++|+|++++|++|+.
T Consensus       164 ~~~----~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~----~~h~~~v~~~~~s~~~~~l~s~s~  235 (340)
T 4aow_A          164 TVQ----DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH----IGHTGYLNTVTVSPDGSLCASGGK  235 (340)
T ss_dssp             EEC----SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE----CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEE----eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe----cCCCCcEEEEEECCCCCEEEEEeC
Confidence            221    22334578899998764  57889999999999999887766554    468899999999999999999999


Q ss_pred             CCcEEEEecCceE
Q 024451          252 DTNLKIWAFGGYR  264 (267)
Q Consensus       252 dg~i~~w~~~~~~  264 (267)
                      ||.|++|++...+
T Consensus       236 Dg~i~iwd~~~~~  248 (340)
T 4aow_A          236 DGQAMLWDLNEGK  248 (340)
T ss_dssp             TCEEEEEETTTTE
T ss_pred             CCeEEEEEeccCc
Confidence            9999999986544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2e-32  Score=230.46  Aligned_cols=225  Identities=27%  Similarity=0.504  Sum_probs=188.5

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS   83 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~   83 (267)
                      ++++++++|++|+.||+|++||....       .....+.+|...|.++.|  + +.++++|+.||+|++||+.++....
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~~~~~~~~  207 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTL-------ECKRILTGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDVNTGEMLN  207 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSC-------CEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCC-------eEEEEEcCCCCcEEEEEE--C-CCEEEEEcCCCeEEEEECCCCcEEE
Confidence            56679999999999999999998642       255678899999999998  3 3589999999999999999987766


Q ss_pred             EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc--eEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      .+     .+|...+.++.+++   ..+++++.|+.|++||++.....  ...+.+|...|.++.|  +++++++++.|+.
T Consensus       208 ~~-----~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~  277 (435)
T 1p22_A          208 TL-----IHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT  277 (435)
T ss_dssp             EE-----CCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred             EE-----cCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCe
Confidence            65     36888999999863   47899999999999998754322  2567789999999998  6789999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      |++||+++++.+..+..     +...+.++.|  ++.++++|+.||.|++||..+++.+..+    ..|...|.+++|  
T Consensus       278 i~vwd~~~~~~~~~~~~-----~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~~~~--  344 (435)
T 1p22_A          278 IKVWNTSTCEFVRTLNG-----HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL----EGHEELVRCIRF--  344 (435)
T ss_dssp             EEEEETTTCCEEEEEEC-----CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE----CCCSSCEEEEEC--
T ss_pred             EEEEECCcCcEEEEEcC-----CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE----eCCcCcEEEEEe--
Confidence            99999999877665432     2346888888  4689999999999999999888776554    468899999998  


Q ss_pred             CCCeEEEeECCCcEEEEecC
Q 024451          242 DGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~~  261 (267)
                      ++++|++|+.||.|++|++.
T Consensus       345 ~~~~l~sg~~dg~i~vwd~~  364 (435)
T 1p22_A          345 DNKRIVSGAYDGKIKVWDLV  364 (435)
T ss_dssp             CSSEEEEEETTSCEEEEEHH
T ss_pred             cCCEEEEEeCCCcEEEEECC
Confidence            78999999999999999974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.5e-34  Score=234.16  Aligned_cols=249  Identities=14%  Similarity=0.209  Sum_probs=190.1

Q ss_pred             ceeeCCC----CCeEEEccCCCeEEEeecCCCCCCCCCCcccc--cccCCeeeEEEEEEecCC---CeeEEEeeCCCeEE
Q 024451            2 TCAFSPT----GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR--MLSGHKGYVSCCQYVPDE---DTHLITSSGDQTCV   72 (267)
Q Consensus         2 ~~~~~~~----g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~---~~~l~s~~~d~~v~   72 (267)
                      +++|+|+    ...+++++.++.|++||+.....    .....  ....|...|++++|+|+.   +.+|++|+.|+.|+
T Consensus        23 ~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~   98 (366)
T 3k26_A           23 GVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE----IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR   98 (366)
T ss_dssp             EEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC----EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred             EEEEecccCCCCceEEEECCCCEEEEEEcCCCcE----EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence            5789984    45677777777999999874221    11111  112366889999999973   35899999999999


Q ss_pred             EEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe---eccccceeEEEEecC
Q 024451           73 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---HGHEGDVNTVKFFPD  149 (267)
Q Consensus        73 iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~  149 (267)
                      +||+.++.....+     .+|...|.+++|++.+++++++++.|+.|++||++.. .....+   .+|...|.+++|+|+
T Consensus        99 v~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A           99 IINPITMQCIKHY-----VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-TLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             EECTTTCCEEEEE-----ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-EEEEEECSTTSCSSCEEEEEECTT
T ss_pred             EEEchhceEeeee-----cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-eEEEEecccccccCceeEEEECCC
Confidence            9999988766655     3688999999999756788999999999999999754 345555   679999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCeeeEEEEe-----------------------ecCCCCCCcEEEEEEccCCCEEEEEEeC
Q 024451          150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQ-----------------------QHGENEIPHVTSIAFSISGRLLFAGYSN  206 (267)
Q Consensus       150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----------------------~~~~~~~~~v~~~~~s~~~~~l~~g~~d  206 (267)
                      ++++++++.|+.|++||+++++....+..                       .....+...|.+++|+  ++++++++.|
T Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d  250 (366)
T 3k26_A          173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE  250 (366)
T ss_dssp             SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred             CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence            99999999999999999987643211100                       0001134568999998  7799999999


Q ss_pred             CeEEEEeCCccceeee----------cccccCCccceEEEEEECCC--CCeEEEeECCCcEEEEecCc
Q 024451          207 GDCYVWDTLLAKVVLN----------LGSLQNSHEGRITCLGLSAD--GSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       207 g~i~i~d~~~~~~~~~----------~~~~~~~~~~~v~~~~~~p~--~~~l~sgs~dg~i~~w~~~~  262 (267)
                      |.|++||+...+....          .......|...|.+++|+|+  +++|++|+.||.|++|++..
T Consensus       251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~  318 (366)
T 3k26_A          251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV  318 (366)
T ss_dssp             SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred             CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence            9999999866543100          00111357788999999999  99999999999999999865

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.9e-32  Score=239.27  Aligned_cols=241  Identities=17%  Similarity=0.230  Sum_probs=197.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeee-EEEEEEec--CCCeeEEEeeCCCeEEEEeCCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY-VSCCQYVP--DEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~--~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      +++|+|+|++|++++ ++.+++|++.....   .......+.+|... |++++|+|  ++ .+|++++.|++|++||+.+
T Consensus        23 ~~~~spdg~~l~~~~-~~~v~v~~~~~~~~---~~~~~~~~~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~~   97 (615)
T 1pgu_A           23 HLSYDPTTNAIAYPC-GKSAFVRCLDDGDS---KVPPVVQFTGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTF   97 (615)
T ss_dssp             CCEEETTTTEEEEEE-TTEEEEEECCSSCC---SSCSEEEECTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEE
T ss_pred             EEEECCCCCEEEEec-CCeEEEEECCCCCC---ccccceEEecCCCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCCC
Confidence            678999999999998 88999999874311   11255678899999 99999999  76 5899999999999999975


Q ss_pred             C--------eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC----CeEEEEeCCCcccceEEeeccccceeEEEE
Q 024451           79 G--------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----STARLWDTRVASRAVRTFHGHEGDVNTVKF  146 (267)
Q Consensus        79 ~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~  146 (267)
                      +        .....+     ..|...+.+++|++. ++++++++.+    +.|++||..   .....+.+|...|.+++|
T Consensus        98 ~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~v~~~d~~---~~~~~~~~~~~~v~~~~~  168 (615)
T 1pgu_A           98 DKESNSVEVNVKSEF-----QVLAGPISDISWDFE-GRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINACHL  168 (615)
T ss_dssp             EGGGTEEEEEEEEEE-----ECCSSCEEEEEECTT-SSEEEEEECCSSCSEEEEETTTC---CEEEECCSCSSCEEEEEE
T ss_pred             Ccccccccccccchh-----hcccccEEEEEEeCC-CCEEEEeccCCCCccEEEEEECC---CcceeeecCCccEEEEEE
Confidence            4        222222     357889999999974 5677888877    789999842   456778899999999999


Q ss_pred             ecCCC-EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCC---cEEEEEEccC-CCEEEEEEeCCeEEEEeCCccceee
Q 024451          147 FPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP---HVTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVL  221 (267)
Q Consensus       147 ~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~~  221 (267)
                      +|+++ .+++++.|+.|++||+++++....+..     +..   .+.+++|+|+ ++++++++.||.|++||+..++.+.
T Consensus       169 ~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  243 (615)
T 1pgu_A          169 KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT-----HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK  243 (615)
T ss_dssp             CSSSSCEEEEEETTTEEEEEETTTBEEEEEECS-----SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred             CCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc-----cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE
Confidence            99997 899999999999999998776655432     223   6999999999 9999999999999999998877665


Q ss_pred             ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .+......|.+.|.+++|+ ++++|++++.||.|++|++..
T Consensus       244 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~  283 (615)
T 1pgu_A          244 YIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT  283 (615)
T ss_dssp             ECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT
T ss_pred             EecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC
Confidence            5421111688999999999 999999999999999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-33  Score=237.25  Aligned_cols=247  Identities=14%  Similarity=0.210  Sum_probs=187.1

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccccc----------C--CeeeEEEEEE--ecCCCeeEEEeeC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS----------G--HKGYVSCCQY--VPDEDTHLITSSG   67 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~----------~--h~~~v~~~~~--~~~~~~~l~s~~~   67 (267)
                      +++|+|++++|++++.|++|++||+.....  +  .......          .  +...+.++.+  +|+ +.++++++.
T Consensus       116 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~  190 (437)
T 3gre_A          116 QITMIPNFDAFAVSSKDGQIIVLKVNHYQQ--E--SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVALTN  190 (437)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEEEEEEEE--T--TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEEEET
T ss_pred             EEEEeCCCCEEEEEeCCCEEEEEEeccccC--C--ceeeccccceeEEEEccCcccccCceEEEEEEcCC-CCEEEEEeC
Confidence            678999999999999999999999852100  0  0111111          1  5556666664  343 468999999


Q ss_pred             CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEE
Q 024451           68 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKF  146 (267)
Q Consensus        68 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~  146 (267)
                      |+.|++||++++.....+..   ..|...|.++++++. ++++++++.||.|++||++. ...+..+. .|...|.++.|
T Consensus       191 d~~i~iwd~~~~~~~~~~~~---~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~  265 (437)
T 3gre_A          191 LSRVIIFDIRTLERLQIIEN---SPRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPITHVEV  265 (437)
T ss_dssp             TSEEEEEETTTCCEEEEEEC---CGGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEEEEEEE
T ss_pred             CCeEEEEeCCCCeeeEEEcc---CCCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCceEEEEe
Confidence            99999999999877666532   127889999999864 67899999999999999985 44555554 67788999966


Q ss_pred             e----cCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC---------------------CCCCCcEEEEEEccCCCEEE
Q 024451          147 F----PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG---------------------ENEIPHVTSIAFSISGRLLF  201 (267)
Q Consensus       147 ~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------------~~~~~~v~~~~~s~~~~~l~  201 (267)
                      +    |++.++++++.|+.|++||+++++....+.....                     ..+...|.+++|+ ++++|+
T Consensus       266 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~  344 (437)
T 3gre_A          266 CQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL  344 (437)
T ss_dssp             CTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred             ccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence            5    4577999999999999999999887766543210                     0133458899999 789999


Q ss_pred             EEEeCCeEEEEeCCccceeeeccc---------------------------------ccCCccceEEEEEECCC--CCeE
Q 024451          202 AGYSNGDCYVWDTLLAKVVLNLGS---------------------------------LQNSHEGRITCLGLSAD--GSAL  246 (267)
Q Consensus       202 ~g~~dg~i~i~d~~~~~~~~~~~~---------------------------------~~~~~~~~v~~~~~~p~--~~~l  246 (267)
                      +|+.||.|++||+..++....+..                                 ....|...|.+++|+++  +.+|
T Consensus       345 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l  424 (437)
T 3gre_A          345 TDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLL  424 (437)
T ss_dssp             EEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEE
T ss_pred             ecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEE
Confidence            999999999999987665433321                                 01138899999999988  7899


Q ss_pred             EEeECCCcEEEEe
Q 024451          247 CTGSWDTNLKIWA  259 (267)
Q Consensus       247 ~sgs~dg~i~~w~  259 (267)
                      ++|+.||.|+||.
T Consensus       425 ~s~~~dG~I~iw~  437 (437)
T 3gre_A          425 VACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEETTSCEEEEC
T ss_pred             EEEcCCceEEEeC
Confidence            9999999999994

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.7e-33  Score=229.85  Aligned_cols=257  Identities=11%  Similarity=0.089  Sum_probs=177.4

Q ss_pred             CceeeCCCCCeEEEccC-------CCeEEEeecCCCCCCCC-CC--cccccccCCeeeEEEEEEecC--------CCeeE
Q 024451            1 MTCAFSPTGQSVACGGL-------DSVCSIFNLNSPTDKDG-NL--PVSRMLSGHKGYVSCCQYVPD--------EDTHL   62 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~-------d~~v~~w~~~~~~~~~~-~~--~~~~~~~~h~~~v~~~~~~~~--------~~~~l   62 (267)
                      ++++|+|+|++|++||.       ++.|++|++........ ..  .....+.+|...|.++++.++        +...|
T Consensus        18 ~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l   97 (365)
T 4h5i_A           18 YGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKI   97 (365)
T ss_dssp             EEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHH
T ss_pred             EEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEE
Confidence            47899999999999875       44699999875331100 00  011246788888998887652        11123


Q ss_pred             EEeeCCCeEEEEeCCCCeeEE----EeCCccccCCccceEEEEEeCCCCeEEE--EecCCCeEEEEeCCCcccceEEeec
Q 024451           63 ITSSGDQTCVLWDITTGLRTS----VFGGEFQSGHTADVLSVSISGSNSRMFV--SGSCDSTARLWDTRVASRAVRTFHG  136 (267)
Q Consensus        63 ~s~~~d~~v~iwd~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~--s~~~d~~i~iwd~~~~~~~~~~~~~  136 (267)
                      ++++.|+++|+|++.+.....    .........++..+..++|+|.+ ++++  +++.|++|++||++.. .....+ .
T Consensus        98 ~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~-~~~~~~-~  174 (365)
T 4h5i_A           98 TQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDL-TEKFEI-E  174 (365)
T ss_dssp             HHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTT-EEEEEE-E
T ss_pred             EEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCC-cEEEEe-C
Confidence            345568899999986542111    11111123355568889999754 4443  5668999999999753 344555 4


Q ss_pred             cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC----eEEEE
Q 024451          137 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----DCYVW  212 (267)
Q Consensus       137 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg----~i~i~  212 (267)
                      |...|.+++|+|+|+++++++.| .+++|+..+++......   ...+...+.+++|+|++..+++++.++    .+++|
T Consensus       175 ~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          175 TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKT---DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEEC---CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeee---cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence            77889999999999999998855 56667666665543221   122345689999999999999999887    68888


Q ss_pred             eCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451          213 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      |................|...|++++|+|+|++||+|+.|++|+||++...+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~  302 (365)
T 4h5i_A          251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS  302 (365)
T ss_dssp             EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred             ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence            8755433211111124688899999999999999999999999999986544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5.9e-32  Score=221.92  Aligned_cols=242  Identities=14%  Similarity=0.149  Sum_probs=173.4

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      .+++|+|+|++|++|+.|+ +++|++....         .....+...+..+.+.++....+++++.|++|++||..++.
T Consensus        23 ~~v~fs~dg~~la~g~~~~-~~iw~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~   92 (355)
T 3vu4_A           23 TDYEFNQDQSCLILSTLKS-FEIYNVHPVA---------HIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ   92 (355)
T ss_dssp             CEEEECTTSSEEEEECSSE-EEEEEETTEE---------EEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred             EEEEECCCCCEEEEEcCCE-EEEEecCCcc---------eeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence            3689999999999998775 7899976411         11111222467778887765555778889999999999887


Q ss_pred             eEEEeCCccccCCccceEEEEEeCC----------------CC------------------eEEEE--ecCCCeEEEEeC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGS----------------NS------------------RMFVS--GSCDSTARLWDT  124 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~----------------~~------------------~~~~s--~~~d~~i~iwd~  124 (267)
                      ....+.      +...+.++.+++.                ..                  ..++.  ++.||.|++||+
T Consensus        93 ~~~~~~------~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~  166 (355)
T 3vu4_A           93 DVSRIK------VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKL  166 (355)
T ss_dssp             EEEEEE------CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEEC
T ss_pred             EEEEEE------CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEEC
Confidence            655442      2233444444321                00                  22333  688999999998


Q ss_pred             CCcc--------------cc-eEEeeccccceeEEEEecCCCEEEEeeCCCc-EEEEeCCCCeeeEEEEeecCCCCCCcE
Q 024451          125 RVAS--------------RA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQLQVYYQQHGENEIPHV  188 (267)
Q Consensus       125 ~~~~--------------~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~v  188 (267)
                      +...              .+ ...+.+|.+.|.+++|+|++++|++++.|++ |++||+++++.+..+...   .+...|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g---~h~~~v  243 (355)
T 3vu4_A          167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG---LDRADV  243 (355)
T ss_dssp             CC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT---TCCSCE
T ss_pred             CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC---CCCCcE
Confidence            7432              11 5678899999999999999999999999998 999999998877665421   123579


Q ss_pred             EEEEEccCCCEEEEEEeCCeEEEEeCCccceee--eccc-----------------ccCCccceEEEEEECCCCCeEEEe
Q 024451          189 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL--NLGS-----------------LQNSHEGRITCLGLSADGSALCTG  249 (267)
Q Consensus       189 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~-----------------~~~~~~~~v~~~~~~p~~~~l~sg  249 (267)
                      .+++|+|++++|++++.|+.|++||+.......  .+..                 +...+..+...++|+|++++|+++
T Consensus       244 ~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~  323 (355)
T 3vu4_A          244 VDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVW  323 (355)
T ss_dssp             EEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEE
Confidence            999999999999999999999999986542110  0000                 111122234668999999999999


Q ss_pred             ECCCcEEEEecC
Q 024451          250 SWDTNLKIWAFG  261 (267)
Q Consensus       250 s~dg~i~~w~~~  261 (267)
                      +.||.+++|++.
T Consensus       324 ~~dg~~~~~~~~  335 (355)
T 3vu4_A          324 PHTRMIETFKVV  335 (355)
T ss_dssp             TTTTEEEEEEEE
T ss_pred             eCCCeEEEEEEE
Confidence            999999999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.2e-32  Score=228.55  Aligned_cols=227  Identities=26%  Similarity=0.430  Sum_probs=182.9

Q ss_pred             CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451            6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF   85 (267)
Q Consensus         6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~   85 (267)
                      ..++++|++|+.||+|++||+...       .....+.+|...|.++.|++   ..+++|+.|++|++||+.++......
T Consensus       180 ~~~~~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~  249 (435)
T 1p22_A          180 QYDERVIITGSSDSTVRVWDVNTG-------EMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLR  249 (435)
T ss_dssp             ECCSSEEEEEETTSCEEEEESSSC-------CEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred             EECCCEEEEEcCCCeEEEEECCCC-------cEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceee
Confidence            348899999999999999998753       24567789999999999975   37999999999999999876543211


Q ss_pred             CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEE
Q 024451           86 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF  165 (267)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw  165 (267)
                        ....+|...+.++.+.   ++++++++.|+.|++||++. ......+.+|...|.++.++  ++++++++.|+.|++|
T Consensus       250 --~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iw  321 (435)
T 1p22_A          250 --RVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTST-CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLW  321 (435)
T ss_dssp             --EEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred             --eEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCc-CcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEE
Confidence              1124688899999984   45889999999999999975 44677888999999999984  6799999999999999


Q ss_pred             eCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc---------eeeecccccCCccceEEE
Q 024451          166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK---------VVLNLGSLQNSHEGRITC  236 (267)
Q Consensus       166 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~---------~~~~~~~~~~~~~~~v~~  236 (267)
                      |+++++.+..+..     +...+.+++|  ++.++++|+.||.|++||+...+         .+..+    ..|.+.|.+
T Consensus       322 d~~~~~~~~~~~~-----h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~h~~~v~~  390 (435)
T 1p22_A          322 DIECGACLRVLEG-----HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL----VEHSGRVFR  390 (435)
T ss_dssp             ETTTCCEEEEECC-----CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE----CCCSSCCCC
T ss_pred             ECCCCCEEEEEeC-----CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec----cCCCCCeEE
Confidence            9999877655432     3346889888  78899999999999999986554         22222    468899999


Q ss_pred             EEECCCCCeEEEeECCCcEEEEecCce
Q 024451          237 LGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       237 ~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      ++|  ++++|++|+.||.|++|++...
T Consensus       391 l~~--~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          391 LQF--DEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             EEE--CSSCEEECCSSSEEEEEC----
T ss_pred             EEe--CCCEEEEEeCCCEEEEEECCCC
Confidence            999  6889999999999999998654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.4e-31  Score=222.85  Aligned_cols=226  Identities=26%  Similarity=0.439  Sum_probs=190.6

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      .+++++|++|++|+.||+|++||+...       .....+.+|...|.++.|++   .++++|+.|++|++||+.++...
T Consensus       123 ~~~~~~g~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~  192 (445)
T 2ovr_B          123 TCLQFCGNRIVSGSDDNTLKVWSAVTG-------KCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECI  192 (445)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTTC-------CEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEEcCCEEEEEECCCcEEEEECCCC-------cEEEEEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCcCcEE
Confidence            357788999999999999999998642       25667889999999999974   47999999999999999998776


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  162 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  162 (267)
                      ..+     .+|...|.++.+++   ..+++++.|+.|++||++. .+....+.+|...|.++.+  +++++++++.|+.|
T Consensus       193 ~~~-----~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i  261 (445)
T 2ovr_B          193 HTL-----YGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIET-GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMV  261 (445)
T ss_dssp             EEE-----CCCSSCEEEEEEET---TEEEEEETTSEEEEEESSS-CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCE
T ss_pred             EEE-----CCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCC-CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEE
Confidence            665     36888999999863   4689999999999999975 4467778899999999998  67899999999999


Q ss_pred             EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC
Q 024451          163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD  242 (267)
Q Consensus       163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  242 (267)
                      ++||+++++.+..+.     .+...+.+++|  ++.++++|+.||.|++||+.+++.+..+    ..|...+.++.+  +
T Consensus       262 ~iwd~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~v~~~~~--~  328 (445)
T 2ovr_B          262 KVWDPETETCLHTLQ-----GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL----TGHQSLTSGMEL--K  328 (445)
T ss_dssp             EEEEGGGTEEEEEEC-----CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE----CCCCSCEEEEEE--E
T ss_pred             EEEECCCCcEeEEec-----CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE----cCCcccEEEEEE--e
Confidence            999999887665542     23346889988  7889999999999999999888776554    467888888876  4


Q ss_pred             CCeEEEeECCCcEEEEecCc
Q 024451          243 GSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       243 ~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +++|++|+.||.|++|++..
T Consensus       329 ~~~l~~~~~dg~i~vwd~~~  348 (445)
T 2ovr_B          329 DNILVSGNADSTVKIWDIKT  348 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTT
T ss_pred             CCEEEEEeCCCeEEEEECCC
Confidence            67999999999999999754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-32  Score=224.25  Aligned_cols=216  Identities=18%  Similarity=0.242  Sum_probs=173.4

Q ss_pred             ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC--eeEEEeCCccccCCccceEEEEEeCC-CCeEEEEec
Q 024451           38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGS  114 (267)
Q Consensus        38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~  114 (267)
                      +...+.+|+..|++++|+|++ .+|++|+.|+.|++||+...  .....+     .+|...|.+++|+++ +++++++++
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~~   76 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTL-----TGHEGPVWRVDWAHPKFGTILASCS   76 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             ccEEecCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCCcceeeeEe-----cCCCCcEEEEEeCCCCCCCEEEEec
Confidence            345678999999999999975 58999999999999999743  333333     468999999999754 267899999


Q ss_pred             CCCeEEEEeCCCcc-cceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEE
Q 024451          115 CDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI  191 (267)
Q Consensus       115 ~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  191 (267)
                      .|+.|++||++... .....+..|...|.+++|+|+  ++++++++.|+.|++||+++.........   ..+...+.++
T Consensus        77 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~~v~~~  153 (379)
T 3jrp_A           77 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII---DAHAIGVNSA  153 (379)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE---ECCTTCEEEE
T ss_pred             cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe---cCCCCceEEE
Confidence            99999999987543 145667789999999999999  99999999999999999988743322211   1233469999


Q ss_pred             EEcc-------------CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC---CCeEEEeECCCcE
Q 024451          192 AFSI-------------SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD---GSALCTGSWDTNL  255 (267)
Q Consensus       192 ~~s~-------------~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~sgs~dg~i  255 (267)
                      +|+|             ++.++++|+.||.|++||+...+...........|...|.+++|+|+   +++|++++.||.|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i  233 (379)
T 3jrp_A          154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC  233 (379)
T ss_dssp             EECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred             EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence            9999             69999999999999999987654332222222568999999999999   8999999999999


Q ss_pred             EEEecCc
Q 024451          256 KIWAFGG  262 (267)
Q Consensus       256 ~~w~~~~  262 (267)
                      ++|++..
T Consensus       234 ~iwd~~~  240 (379)
T 3jrp_A          234 IIWTQDN  240 (379)
T ss_dssp             EEEEESS
T ss_pred             EEEeCCC
Confidence            9999865

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-31  Score=225.95  Aligned_cols=209  Identities=12%  Similarity=0.099  Sum_probs=167.2

Q ss_pred             cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC--CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEE
Q 024451           43 SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT--TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR  120 (267)
Q Consensus        43 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~  120 (267)
                      .+|.+.|.+++|+|++..++++++.|++|++||+.  ++.....+..   ..|...+.+++|++ +++++++++.++.++
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~  174 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR---FCFSKRPNAISIAE-DDTTVIIADKFGDVY  174 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE---EECSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec---ccCCCCceEEEEcC-CCCEEEEEeCCCcEE
Confidence            35777899999999875445899999999999998  6655554421   24667899999997 457889999999999


Q ss_pred             EEeCCCccc---ceEEeeccccceeEEEEecC---CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEc
Q 024451          121 LWDTRVASR---AVRTFHGHEGDVNTVKFFPD---GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  194 (267)
Q Consensus       121 iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s  194 (267)
                      +|++.....   ....+.+|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+..    .+...|.+++|+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~----~h~~~v~~~~~s  250 (450)
T 2vdu_B          175 SIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF----GHKHFVSSICCG  250 (450)
T ss_dssp             EEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC----CCSSCEEEEEEC
T ss_pred             EEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec----CCCCceEEEEEC
Confidence            999864332   22366789999999999999   99999999999999999998876654332    234579999999


Q ss_pred             cCCCEEEEEEeCCeEEEEeCCccceeeeccccc---------------------CCccceEEEEEECCCCCeEEEeE-CC
Q 024451          195 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ---------------------NSHEGRITCLGLSADGSALCTGS-WD  252 (267)
Q Consensus       195 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~---------------------~~~~~~v~~~~~~p~~~~l~sgs-~d  252 (267)
                       ++.+|++|+.|+.|++||+..++.+..+....                     ..+...|.+++|+|++++|++++ .|
T Consensus       251 -d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d  329 (450)
T 2vdu_B          251 -KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT  329 (450)
T ss_dssp             -STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC
T ss_pred             -CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC
Confidence             99999999999999999998877554432100                     02345789999999999999999 89


Q ss_pred             CcEEEEec
Q 024451          253 TNLKIWAF  260 (267)
Q Consensus       253 g~i~~w~~  260 (267)
                      +.|++|++
T Consensus       330 ~~i~iw~~  337 (450)
T 2vdu_B          330 KCIIILEM  337 (450)
T ss_dssp             SEEEEEEE
T ss_pred             CeEEEEEe
Confidence            99999998

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.5e-31  Score=222.89  Aligned_cols=240  Identities=20%  Similarity=0.324  Sum_probs=188.9

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      ++|+++ ++|++| .|++|++||.....     ......+.+|...|++++|+|++ .+|++|+.|++|++||++++...
T Consensus       111 l~wS~~-n~lAvg-ld~tV~lWd~~tg~-----~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~~  182 (420)
T 4gga_A          111 VDWSSG-NVLAVA-LDNSVYLWSASSGD-----ILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRL  182 (420)
T ss_dssp             EEECTT-SEEEEE-ETTEEEEEETTTCC-----EEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEECCC-CEEEEE-eCCEEEEEECCCCC-----EEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcEE
Confidence            678875 566665 59999999986522     22223456888999999999975 58999999999999999998877


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC  162 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  162 (267)
                      ..+     .+|...+.++.+++   .++++++.|+.+++||.+........+.+|...+..+.++|+++++++++.|+.+
T Consensus       183 ~~~-----~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v  254 (420)
T 4gga_A          183 RNM-----TSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV  254 (420)
T ss_dssp             EEE-----CCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEE-----eCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccc
Confidence            665     46888999988863   5889999999999999887666777888999999999999999999999999999


Q ss_pred             EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEE--EEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~--g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      ++||..+++........ ...+...|.+++|+|.+. .+++  |+.|+.|++||+.+++....+     .+...+.++.|
T Consensus       255 ~i~~~~~~~~~~~~~~~-~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~-----~~~~~v~~~~~  328 (420)
T 4gga_A          255 NVWPSAPGEGGWVPLQT-FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-----DAHSQVCSILW  328 (420)
T ss_dssp             EEEESSCCSSCSCCSEE-ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE-----ECSSCEEEEEE
T ss_pred             eEEeeccccccceeeee-ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee-----ccccceeeeee
Confidence            99999876532111111 122345799999999765 4444  347899999999888766544     23457889999


Q ss_pred             CCCCCeEEEeE--CCCcEEEEecCceE
Q 024451          240 SADGSALCTGS--WDTNLKIWAFGGYR  264 (267)
Q Consensus       240 ~p~~~~l~sgs--~dg~i~~w~~~~~~  264 (267)
                      +|+++.|++++  .|+.|+||++...+
T Consensus       329 ~~~~~~lv~~sg~~d~~I~iwd~~~~~  355 (420)
T 4gga_A          329 SPHYKELISGHGFAQNQLVIWKYPTMA  355 (420)
T ss_dssp             ETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred             cCCCCeEEEEEecCCCEEEEEECCCCc
Confidence            99999998765  79999999985543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-31  Score=225.77  Aligned_cols=241  Identities=10%  Similarity=0.066  Sum_probs=177.9

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCC-----------------CC-----ccccccc-CCeeeEEEEEEecC
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG-----------------NL-----PVSRMLS-GHKGYVSCCQYVPD   57 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~-----------------~~-----~~~~~~~-~h~~~v~~~~~~~~   57 (267)
                      .+++|+|||+++||++.|++|+  |...+..-++                 ..     .....+. .|...|.+|+|+|+
T Consensus        19 ~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPd   96 (588)
T 2j04_A           19 NNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPI   96 (588)
T ss_dssp             CCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSS
T ss_pred             EEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCC
Confidence            3689999999999999999997  4332210000                 00     0011222 56889999999997


Q ss_pred             CCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc------ce
Q 024451           58 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR------AV  131 (267)
Q Consensus        58 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~------~~  131 (267)
                      + .+|++++.||+|++||.++  ....+. ....-....+.+++|+| +++++++|+.||+|++||+.....      .+
T Consensus        97 G-~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l  171 (588)
T 2j04_A           97 D-DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFE  171 (588)
T ss_dssp             S-SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEE
T ss_pred             C-CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceee
Confidence            6 5799999999999999654  222221 00000023599999997 577899999999999999875421      23


Q ss_pred             EEe----eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeee---EEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451          132 RTF----HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL---QVYYQQHGENEIPHVTSIAFSISGRLLFAGY  204 (267)
Q Consensus       132 ~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~  204 (267)
                      ..+    .+|...|.+++|+|+|  +++++.|+++++||+..++..   ..+..    .+...|.+++|+  ++.+++++
T Consensus       172 ~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~----~h~~~V~svaFs--g~~LASa~  243 (588)
T 2j04_A          172 SSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN----ASRRKITDLKIV--DYKVVLTC  243 (588)
T ss_dssp             EEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC----CCSSCCCCEEEE--TTEEEEEC
T ss_pred             eeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc----cccCcEEEEEEE--CCEEEEEe
Confidence            454    5678899999999998  888999999999999876632   12211    123468999999  68888886


Q ss_pred             eCCeEEEEeCCccceeeecccccCCccceEEEEEE--CCCCCeEEEeECCCcEEEEecCc
Q 024451          205 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL--SADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       205 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                       ++.|++||....+.....    .+|.+.|..++|  +|++..|++++.||+ ++|.++.
T Consensus       244 -~~tIkLWd~~~~~~~~~~----~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~  297 (588)
T 2j04_A          244 -PGYVHKIDLKNYSISSLK----TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE  297 (588)
T ss_dssp             -SSEEEEEETTTTEEEEEE----CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS
T ss_pred             -CCeEEEEECCCCeEEEEE----cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc
Confidence             699999998876652211    258899999999  999999999999999 9998754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.7e-32  Score=219.26  Aligned_cols=227  Identities=18%  Similarity=0.246  Sum_probs=184.0

Q ss_pred             ceeeCCCCC-eEEEccCCCeEEEeec-CCCCCCCCCCcccccccC--CeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451            2 TCAFSPTGQ-SVACGGLDSVCSIFNL-NSPTDKDGNLPVSRMLSG--HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT   77 (267)
Q Consensus         2 ~~~~~~~g~-~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~   77 (267)
                      +++|+|+++ +|++++.||.|++||+ ...        ....+.+  |...|.++.|+| + .++++++.|+.|++||+.
T Consensus        61 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--------~~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~  130 (342)
T 1yfq_A           61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSP--------SFQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             EEEEEESSSEEEEEEETTSCEEEECSSSSS--------SEEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHH
T ss_pred             EEEECCCCCcEEEEEcCCCeEEEEEeccCC--------ceEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEccc
Confidence            578999999 9999999999999998 642        1255677  999999999999 4 589999999999999987


Q ss_pred             C---------CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC-ccc-ceEEeeccccceeEEEE
Q 024451           78 T---------GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-ASR-AVRTFHGHEGDVNTVKF  146 (267)
Q Consensus        78 ~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~-~~~~~~~~~~~i~~~~~  146 (267)
                      +         +.....      ..|...+.++++++.  . +++++.|+.|++||++. ... .......|...+.++.|
T Consensus       131 ~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~--~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~  201 (342)
T 1yfq_A          131 NYGDGVIAVKNLNSNN------TKVKNKIFTMDTNSS--R-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL  201 (342)
T ss_dssp             HHTTBCEEEEESCSSS------SSSCCCEEEEEECSS--E-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred             ccccccccccCCeeeE------EeeCCceEEEEecCC--c-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence            5         332221      237788999999854  2 88999999999999975 332 23344567889999999


Q ss_pred             ec-CCCEEEEeeCCCcEEEEeCCCC------eeeEEEEeecCC-----CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451          147 FP-DGNRFGTGSDDGTCRLFDIRTG------HQLQVYYQQHGE-----NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  214 (267)
Q Consensus       147 ~~-~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~  214 (267)
                      +| +++++++++.|+.|++||++..      +....+.. +..     .+...|.+++|+|++++|++|+.||.|++||+
T Consensus       202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC-HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC-CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec-ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence            99 9999999999999999999876      44433332 211     11337999999999999999999999999999


Q ss_pred             CccceeeecccccCCc-cceEEEEEECCCCCeEEEeECCCc
Q 024451          215 LLAKVVLNLGSLQNSH-EGRITCLGLSADGSALCTGSWDTN  254 (267)
Q Consensus       215 ~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~sgs~dg~  254 (267)
                      ...+.+..+    ..| .++|.+++  |++++|++|+.||.
T Consensus       281 ~~~~~~~~~----~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          281 QTRKKIKNF----AKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             TTTEEEEEC----CCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             ccHhHhhhh----hcccCCCceEec--CCCCeEEEEecCCc
Confidence            888776554    356 89999999  99999999999998

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.8e-32  Score=227.77  Aligned_cols=254  Identities=14%  Similarity=0.178  Sum_probs=183.6

Q ss_pred             ceeeCCCC--CeEEEccCCCeEEEeecCCCCCC--------------------CCCCcc------------c-ccccCCe
Q 024451            2 TCAFSPTG--QSVACGGLDSVCSIFNLNSPTDK--------------------DGNLPV------------S-RMLSGHK   46 (267)
Q Consensus         2 ~~~~~~~g--~~l~~~~~d~~v~~w~~~~~~~~--------------------~~~~~~------------~-~~~~~h~   46 (267)
                      +++|+|++  .+|++++.|++|++||+......                    ....+.            . ....+|.
T Consensus        98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  177 (447)
T 3dw8_B           98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT  177 (447)
T ss_dssp             EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred             EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence            57899998  89999999999999998641100                    000000            1 1146899


Q ss_pred             eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-eEEEe--CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEe
Q 024451           47 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVF--GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD  123 (267)
Q Consensus        47 ~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd  123 (267)
                      ..|.+++|+|++ .+|++| .|+.|++||+++.. ....+  ......+|...|.+++|+|.+..++++++.|+.|++||
T Consensus       178 ~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  255 (447)
T 3dw8_B          178 YHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD  255 (447)
T ss_dssp             SCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             cceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence            999999999975 578888 79999999998432 22222  11123468899999999976547899999999999999


Q ss_pred             CCCccc---ceEEeecccc------------ceeEEEEecCCCEEEEeeCCCcEEEEeCCC-CeeeEEEEeecCCCC---
Q 024451          124 TRVASR---AVRTFHGHEG------------DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENE---  184 (267)
Q Consensus       124 ~~~~~~---~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~---  184 (267)
                      ++....   ....+.+|..            .|.+++|+|++++|++++. +.|++||+++ ++.+..+..+.....   
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~  334 (447)
T 3dw8_B          256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLC  334 (447)
T ss_dssp             TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred             CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccc
Confidence            975432   1566777765            8999999999999999999 9999999987 555544432211000   


Q ss_pred             -------CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccc----------------------------ccCC
Q 024451          185 -------IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS----------------------------LQNS  229 (267)
Q Consensus       185 -------~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----------------------------~~~~  229 (267)
                             ...+..++|+|++++|++|+.||.|++||+...+.+.....                            ....
T Consensus       335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (447)
T 3dw8_B          335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLD  414 (447)
T ss_dssp             HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCC
T ss_pred             ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccc
Confidence                   00133489999999999999999999999887654321100                            0113


Q ss_pred             ccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          230 HEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      +...|..++|+|++++||+++.++ +.+|.
T Consensus       415 ~~~~i~~~~~~p~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          415 FNKKILHTAWHPKENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             TTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred             cCCceeEEEECCCCCEEEEEecce-eeeec
Confidence            456789999999999999998776 66664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.1e-31  Score=240.10  Aligned_cols=238  Identities=23%  Similarity=0.385  Sum_probs=195.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC-e
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-L   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~   80 (267)
                      +++|+|+|++|++++.||.|++||+...       .....+.+|.+.|+++.|+|++ .+|++++.|++|++||+.++ .
T Consensus        60 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~  131 (814)
T 3mkq_A           60 AGKFIARKNWIIVGSDDFRIRVFNYNTG-------EKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA  131 (814)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSE
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEECCCC-------cEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCce
Confidence            5789999999999999999999998652       2456678899999999999976 57999999999999999876 3


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec--CCCEEEEeeC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSD  158 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~  158 (267)
                      ....+     .+|...+.+++|+|.++..+++++.||.|++||++...........+...+.+++|+|  +++++++++.
T Consensus       132 ~~~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  206 (814)
T 3mkq_A          132 LEQTF-----EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (814)
T ss_dssp             EEEEE-----ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred             EEEEE-----cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence            33333     3688899999999756778999999999999998754433333334458899999999  8999999999


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      |+.|++||+++++....+..     +...+.+++|+|+++++++|+.||.|++||..+.+....+    ..|...+.+++
T Consensus       207 dg~i~~~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~~~~~~v~~~~  277 (814)
T 3mkq_A          207 DLTIKIWDYQTKSCVATLEG-----HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL----NVGLERSWCIA  277 (814)
T ss_dssp             TSEEEEEETTTTEEEEEEEC-----CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE----CCSSSSEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe----ecCCCcEEEEE
Confidence            99999999998876655432     2346999999999999999999999999999887766544    45778999999


Q ss_pred             ECCCCC--eEEEeECCCcEEEEecCc
Q 024451          239 LSADGS--ALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       239 ~~p~~~--~l~sgs~dg~i~~w~~~~  262 (267)
                      |+|++.  ++++++ |+.+.+|++..
T Consensus       278 ~~~~~~~~~~~~~~-~~~~~~~~~~~  302 (814)
T 3mkq_A          278 THPTGRKNYIASGF-DNGFTVLSLGN  302 (814)
T ss_dssp             ECTTCGGGEEEEEE-TTEEEEEECSC
T ss_pred             EccCCCceEEEEEe-CCCEEEEEcCC
Confidence            999987  455554 67788887643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-31  Score=241.38  Aligned_cols=241  Identities=10%  Similarity=0.095  Sum_probs=185.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++||+|+.||+|++|+....       .... ...|...|.+++|+| +. +|++++.|++|++||+.++..
T Consensus        22 ~lafspdg~~lAsgs~Dg~I~lw~~~~~-------~~~~-~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~   91 (902)
T 2oaj_A           22 AAAFDFTQNLLAIATVTGEVHIYGQQQV-------EVVI-KLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKV   91 (902)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEECSTTC-------EEEE-ECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeCCCc-------EEEE-EcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcE
Confidence            6899999999999999999999997531       1222 235888999999999 54 899999999999999998876


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce----------EEeeccccceeEEEEecC-C
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV----------RTFHGHEGDVNTVKFFPD-G  150 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~----------~~~~~~~~~i~~~~~~~~-~  150 (267)
                      ...+.      |...|.+++++| +++++++|+.||.|++||++......          ..+.+|.+.|.+++|+|+ +
T Consensus        92 ~~~~~------~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~  164 (902)
T 2oaj_A           92 LTTVF------VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI  164 (902)
T ss_dssp             EEEEE------CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred             EEEEc------CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence            66552      556899999986 46788999999999999987533210          223578899999999996 5


Q ss_pred             CEEEEeeCCCcEEEEeCCCCeeeEEEEeecC-------------CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451          151 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-------------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  217 (267)
Q Consensus       151 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  217 (267)
                      ..+++++.|+.| +||+++++....+..+..             ..+...|.+++|+|++.+|++|+.||.|++||+.++
T Consensus       165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred             CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            789999999999 999999877655432200             112356999999999999999999999999999877


Q ss_pred             ceeee--ccc--ccC----------CccceEEEEEEC----CCC-CeEEEeECCC-----cEEEEec
Q 024451          218 KVVLN--LGS--LQN----------SHEGRITCLGLS----ADG-SALCTGSWDT-----NLKIWAF  260 (267)
Q Consensus       218 ~~~~~--~~~--~~~----------~~~~~v~~~~~~----p~~-~~l~sgs~dg-----~i~~w~~  260 (267)
                      +.+..  +..  ...          .|.++|.+++|+    |++ .+|++|+.|.     .+++|++
T Consensus       244 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          244 HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            65432  110  000          245689999995    553 5788887763     7888875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.6e-31  Score=248.41  Aligned_cols=243  Identities=23%  Similarity=0.388  Sum_probs=193.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC-CeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+|+|++|++++.|++|++||+...       .....+.+|...|.++.|+|++ ..++++++.|+.|++||+.++.
T Consensus       662 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~  734 (1249)
T 3sfz_A          662 CCAFSSDDSYIATCSADKKVKIWDSATG-------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE  734 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred             EEEEecCCCEEEEEeCCCeEEEEECCCC-------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence            6889999999999999999999998753       2566788999999999999853 3578899999999999999987


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc------------------------------
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA------------------------------  130 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~------------------------------  130 (267)
                      ....+     .+|...|.+++|++ +++.+++++.||.|++||++.....                              
T Consensus       735 ~~~~~-----~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  808 (1249)
T 3sfz_A          735 CRNTM-----FGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA  808 (1249)
T ss_dssp             EEEEE-----CCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred             hhhee-----cCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence            76655     36889999999997 4668899999999999997532110                              


Q ss_pred             -----------------------eE-EeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCC
Q 024451          131 -----------------------VR-TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP  186 (267)
Q Consensus       131 -----------------------~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  186 (267)
                                             .. ...+|...+.+++|+|+++++++++.|+.|++||+.++.....+.     .+..
T Consensus       809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-----~h~~  883 (1249)
T 3sfz_A          809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-----GHLS  883 (1249)
T ss_dssp             TSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-----CCSS
T ss_pred             CCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-----CCcc
Confidence                                   00 112677889999999999999999999999999999887655442     2334


Q ss_pred             cEEEEEEccCCCEEEEEEeCCeEEEEeCCccce-----------------------------------------------
Q 024451          187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-----------------------------------------------  219 (267)
Q Consensus       187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~-----------------------------------------------  219 (267)
                      .|.+++|+|+++.+++++.||.+++||......                                               
T Consensus       884 ~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  963 (1249)
T 3sfz_A          884 WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ  963 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSC
T ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCc
Confidence            688888888888888888888888888532100                                               


Q ss_pred             ------------e-----------eec-----ccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          220 ------------V-----------LNL-----GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       220 ------------~-----------~~~-----~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                                  +           ...     ......|...|.+++|+|+|++|++++.||.|++|++..
T Consensus       964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A          964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred             EEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence                        0           000     001135888999999999999999999999999999754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.2e-30  Score=220.08  Aligned_cols=231  Identities=24%  Similarity=0.416  Sum_probs=183.1

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG   87 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   87 (267)
                      +++.+++++.|++|++||+...       .....+.+|...|.++.|.   +.++++++.|+.|++||+.++.....+  
T Consensus       208 ~~~~l~s~s~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~--  275 (445)
T 2ovr_B          208 HEKRVVSGSRDATLRVWDIETG-------QCLHVLMGHVAAVRCVQYD---GRRVVSGAYDFMVKVWDPETETCLHTL--  275 (445)
T ss_dssp             ETTEEEEEETTSEEEEEESSSC-------CEEEEEECCSSCEEEEEEC---SSCEEEEETTSCEEEEEGGGTEEEEEE--
T ss_pred             cCCEEEEEeCCCEEEEEECCCC-------cEEEEEcCCcccEEEEEEC---CCEEEEEcCCCEEEEEECCCCcEeEEe--
Confidence            4567888888888888887542       2445667888889888882   357888999999999998887766555  


Q ss_pred             ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeC
Q 024451           88 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI  167 (267)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~  167 (267)
                         .+|...+.++.+   ++..+++++.|+.|++||++.. +....+.+|...+.++.++  ++++++++.|+.|++||+
T Consensus       276 ---~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~  346 (445)
T 2ovr_B          276 ---QGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDI  346 (445)
T ss_dssp             ---CCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             ---cCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEEC
Confidence               368888999988   3567899999999999999754 4667788898888888774  679999999999999999


Q ss_pred             CCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccc-cCCccceEEEEEECCCCCeE
Q 024451          168 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL-QNSHEGRITCLGLSADGSAL  246 (267)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l  246 (267)
                      ++++.+..+...  ..+...|.+++|+  ++++++|+.||.|++||...++.+..+... ...|.+.|.+++|+|++.+|
T Consensus       347 ~~~~~~~~~~~~--~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  422 (445)
T 2ovr_B          347 KTGQCLQTLQGP--NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC  422 (445)
T ss_dssp             TTCCEEEEECST--TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE
T ss_pred             CCCcEEEEEccC--CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEE
Confidence            988776554321  1234578999985  579999999999999999888766554211 13578899999999999999


Q ss_pred             EEeECCCc----EEEEecCce
Q 024451          247 CTGSWDTN----LKIWAFGGY  263 (267)
Q Consensus       247 ~sgs~dg~----i~~w~~~~~  263 (267)
                      |+|+.||+    +.+|+|..-
T Consensus       423 a~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          423 AVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEECSSSSSCCEEEEEECCCC
T ss_pred             EEcccCCCCccEEEEEECCCC
Confidence            99999998    999998753

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7.1e-31  Score=229.32  Aligned_cols=250  Identities=16%  Similarity=0.186  Sum_probs=198.7

Q ss_pred             ceeeCC--CCCeEEEccCCCeEEEeecCCCCC-CCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC----CeEEEE
Q 024451            2 TCAFSP--TGQSVACGGLDSVCSIFNLNSPTD-KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLW   74 (267)
Q Consensus         2 ~~~~~~--~g~~l~~~~~d~~v~~w~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----~~v~iw   74 (267)
                      +++|+|  ++++|++++.||+|++||+..... ..........+.+|...|.+++|+|++ .+|++++.|    +.|++|
T Consensus        69 ~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~v~~~  147 (615)
T 1pgu_A           69 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISW  147 (615)
T ss_dssp             EEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEET
T ss_pred             EEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC-CEEEEeccCCCCccEEEEE
Confidence            578999  999999999999999999853100 000123455678899999999999976 578888887    689999


Q ss_pred             eCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecccc---ceeEEEEecC-C
Q 024451           75 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG---DVNTVKFFPD-G  150 (267)
Q Consensus        75 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~i~~~~~~~~-~  150 (267)
                      |.  +.....+     .+|...|.+++|++.+..++++++.|+.|++||.+. .+....+.+|..   .|.+++|+|+ +
T Consensus       148 d~--~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (615)
T 1pgu_A          148 DS--GNSLGEV-----SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSG  219 (615)
T ss_dssp             TT--CCEEEEC-----CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred             EC--CCcceee-----ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC-cceeeeecccCCCCceEEEEEECCCCC
Confidence            83  3444433     468899999999986655899999999999999874 446677888988   9999999999 9


Q ss_pred             CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCc
Q 024451          151 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH  230 (267)
Q Consensus       151 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~  230 (267)
                      +++++++.|+.|++||+++++.+..+.. ....+...|.+++|+ ++.++++++.||.|++||+...+....+......+
T Consensus       220 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  297 (615)
T 1pgu_A          220 EFVITVGSDRKISCFDGKSGEFLKYIED-DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL  297 (615)
T ss_dssp             CEEEEEETTCCEEEEETTTCCEEEECCB-TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred             CEEEEEeCCCeEEEEECCCCCEeEEecc-cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcc
Confidence            9999999999999999998876654311 000234579999999 99999999999999999998877665543222334


Q ss_pred             cceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          231 EGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       231 ~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      ...+.++.|. +++++++++.||.|++|++...
T Consensus       298 ~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~  329 (615)
T 1pgu_A          298 GNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD  329 (615)
T ss_dssp             GGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE
T ss_pred             cCceeEEEeC-CCCeEEEEECCCCEEEEECCCC
Confidence            5678888885 8999999999999999998653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-31  Score=216.89  Aligned_cols=240  Identities=13%  Similarity=0.061  Sum_probs=177.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCC----CCCCCCcccccccCCeeeEEEEEEec--CCCeeEEEeeCCCeEEEEe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPT----DKDGNLPVSRMLSGHKGYVSCCQYVP--DEDTHLITSSGDQTCVLWD   75 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~----~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~~~d~~v~iwd   75 (267)
                      +++|+|+   +++++.|+++++|+.....    ...+. .......+|...|.+++|+|  ++ .++++++.|++|++||
T Consensus        81 ~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd  155 (343)
T 3lrv_A           81 TGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNK-VLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQS  155 (343)
T ss_dssp             TTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCC-EEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEE
T ss_pred             eeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcc-eeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEE
Confidence            3567777   9999999999999876311    00111 12223346778999999999  65 5899999999999999


Q ss_pred             CCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec-cccceeEEEEecCCCEEE
Q 024451           76 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFG  154 (267)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~  154 (267)
                      ++++.......    ..+...+.+++|+| ++.++++|+.|+.|++||++........+.. |.+.|.+++|+|++.+|+
T Consensus       156 ~~~~~~~~~~~----~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~  230 (343)
T 3lrv_A          156 YEDDSQYIVHS----AKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMV  230 (343)
T ss_dssp             SSSSCEEEEEC----CCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEE
T ss_pred             CCCCcEEEEEe----cCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEE
Confidence            99887654442    23555789999996 5678999999999999999865543366777 999999999999999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcE--EEEEEccCCCEEEEEEe-CCeEEEEeCCccceeeecccccCCcc
Q 024451          155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV--TSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHE  231 (267)
Q Consensus       155 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~~  231 (267)
                      +++.| .|++||+++.+....+....  .+...+  .+++|+|++++|++++. |+.+++|+..........        
T Consensus       231 s~~~~-~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~--------  299 (343)
T 3lrv_A          231 VECDQ-TVVCFDLRKDVGTLAYPTYT--IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK--------  299 (343)
T ss_dssp             EEESS-BEEEEETTSSTTCBSSCCCB--C-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE--------
T ss_pred             EEeCC-eEEEEEcCCCCcceeecccc--cccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe--------
Confidence            99954 99999999876543211100  011122  46999999999999998 999999997654332211        


Q ss_pred             ceEEEEEECC---CCCeEEEeECCCcEEEEecCc
Q 024451          232 GRITCLGLSA---DGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       232 ~~v~~~~~~p---~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .++..++|+|   +.+.+++++.||.++++-..+
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          300 DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence            4678889998   889999999999999986443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=243.88  Aligned_cols=254  Identities=15%  Similarity=0.131  Sum_probs=184.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccc-----cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~   76 (267)
                      .++|+|+|+.|++|+.|++|++||+........ ......+     .+|...|++++|+|++ ++||+|+.|++|++||+
T Consensus       440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~-~~~~~~l~~~~~~~h~~~V~svafspdg-~~LAsgs~DgtV~lwd~  517 (902)
T 2oaj_A          440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN-ASFEVNLSRTLNKAKELAVDKISFAAET-LELAVSIETGDVVLFKY  517 (902)
T ss_dssp             CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-BCEEEEHHHHTTCSSSCCEEEEEEETTT-TEEEEEETTSCEEEEEE
T ss_pred             cccccccCcEEEEecCCCcEEEEECCCccccCC-ceEEeechhhcCCCCCCceeEEEecCCC-CeEEEEecCcEEEEEEe
Confidence            357899999999999999999999876421100 0000011     2899999999999976 58999999999999999


Q ss_pred             CCCeeEE--------E--------------------------------eCCccccCCccceEEEEEeCCCCeEEEEecCC
Q 024451           77 TTGLRTS--------V--------------------------------FGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  116 (267)
Q Consensus        77 ~~~~~~~--------~--------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d  116 (267)
                      .++....        .                                .......+|...|.+++|+| ++ ++++|+.|
T Consensus       518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D  595 (902)
T 2oaj_A          518 EVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAA  595 (902)
T ss_dssp             EECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETT
T ss_pred             cCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCC
Confidence            7652100        0                                00012246999999999986 45 89999999


Q ss_pred             CeEEEEeCCCcccce-----EEee-ccccceeEEEEe-----cCC---CEEEEeeCCCcEEEEeC---CCCeeeEEEEee
Q 024451          117 STARLWDTRVASRAV-----RTFH-GHEGDVNTVKFF-----PDG---NRFGTGSDDGTCRLFDI---RTGHQLQVYYQQ  179 (267)
Q Consensus       117 ~~i~iwd~~~~~~~~-----~~~~-~~~~~i~~~~~~-----~~~---~~l~~~~~d~~i~iwd~---~~~~~~~~~~~~  179 (267)
                      ++|++||++... .+     +.+. +|...|++++|+     |||   .++++++.|++|++||+   .+++....+..+
T Consensus       596 ~tv~lwd~~~~~-~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~  674 (902)
T 2oaj_A          596 GSLMLIDRRGPA-IIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDI  674 (902)
T ss_dssp             SEEEEEETTTTE-EEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEE
T ss_pred             CcEEEEECCCCe-EEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCc
Confidence            999999986432 22     1233 788999999999     885   89999999999999999   677665555443


Q ss_pred             cCCCCCCcEEEEE-Ec----------------------cCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451          180 HGENEIPHVTSIA-FS----------------------ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  236 (267)
Q Consensus       180 ~~~~~~~~v~~~~-~s----------------------~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  236 (267)
                      ...++..+|..++ |+                      +++..|+++  +..+++|++.+.+.....    ..|...+.+
T Consensus       675 ~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~----~~~~~~~~~  748 (902)
T 2oaj_A          675 TNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKG----FKYPLAATG  748 (902)
T ss_dssp             EECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEE----CSSCEEEEE
T ss_pred             eecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeE----cccceeeeE
Confidence            3222334555555 65                      344444444  789999999887776554    234455666


Q ss_pred             E---E------ECCCCCeEEEeECCCcEEEEecCceEec
Q 024451          237 L---G------LSADGSALCTGSWDTNLKIWAFGGYRRV  266 (267)
Q Consensus       237 ~---~------~~p~~~~l~sgs~dg~i~~w~~~~~~~~  266 (267)
                      +   .      |++++..|++++.||+|++|++-+++.+
T Consensus       749 v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~  787 (902)
T 2oaj_A          749 LSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQ  787 (902)
T ss_dssp             EEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHH
Confidence            5   6      7889999999999999999998777654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-30  Score=219.77  Aligned_cols=248  Identities=12%  Similarity=0.084  Sum_probs=186.0

Q ss_pred             ceeeCCCCCeE-EEccCCCeEEEeecCCCCCCCCCCccccccc--CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451            2 TCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         2 ~~~~~~~g~~l-~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      +++|+|+|++| ++++.|++|++||+....   +  .....+.  .|...|.+++|+|++ .+|++++.|+.|++|++.+
T Consensus       107 ~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~---~--~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~~~~  180 (450)
T 2vdu_B          107 NLRLTSDESRLIACADSDKSLLVFDVDKTS---K--NVLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSIDINS  180 (450)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECSSS---S--SCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTS
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEECcCCC---C--ceeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEecCC
Confidence            57899999996 999999999999986211   1  1333443  567889999999976 5899999999999999987


Q ss_pred             CeeEEEeCCccccCCccceEEEEEeCC--CCeEEEEecCCCeEEEEeCCCcccceEE-eeccccceeEEEEecCCCEEEE
Q 024451           79 GLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGT  155 (267)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~  155 (267)
                      +..... ......+|...|.+++|++.  .++++++++.|+.|++||++... .+.. +.+|...|.+++|+ ++++|++
T Consensus       181 ~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~~~~s-d~~~l~s  257 (450)
T 2vdu_B          181 IPEEKF-TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF-IVDKWLFGHKHFVSSICCG-KDYLLLS  257 (450)
T ss_dssp             CCCSSC-CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT-CEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred             cccccc-cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc-eeeeeecCCCCceEEEEEC-CCCEEEE
Confidence            653320 01122468899999999974  26789999999999999987544 3444 56899999999999 9999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEEeec--------------------CCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeC
Q 024451          156 GSDDGTCRLFDIRTGHQLQVYYQQH--------------------GENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDT  214 (267)
Q Consensus       156 ~~~d~~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~  214 (267)
                      ++.|+.|++||+++++.+..+....                    .......+.+++|+|+++++++++ .++.|++||+
T Consensus       258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            9999999999999988766553211                    001224689999999999999999 8999999998


Q ss_pred             --CccceeeecccccCCccceEEEEEECCCCCeEEEeEC------CCcEEEEec
Q 024451          215 --LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKIWAF  260 (267)
Q Consensus       215 --~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~------dg~i~~w~~  260 (267)
                        .....+.....+ ..| +.|.+++|+|++.++++++.      +..|++|.+
T Consensus       338 ~~~~~~~l~~~~~~-~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~  389 (450)
T 2vdu_B          338 SEKQKGDLALKQII-TFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY  389 (450)
T ss_dssp             CSSSTTCEEEEEEE-ECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred             ccCCCCceeeccEe-ccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence              443211111112 234 78999999996555554443      556899976

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.4e-30  Score=207.74  Aligned_cols=233  Identities=13%  Similarity=0.108  Sum_probs=153.2

Q ss_pred             eEEEccCCCeEEEeecCCCCCCCCCCcccccccC-------------------------CeeeEEEEEEecCC---CeeE
Q 024451           11 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-------------------------HKGYVSCCQYVPDE---DTHL   62 (267)
Q Consensus        11 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~-------------------------h~~~v~~~~~~~~~---~~~l   62 (267)
                      .++++++. +|++|+.....    +.....++.+                         |...|.+++++|++   .+.+
T Consensus        56 ~~~~~~~~-~v~lw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l  130 (356)
T 2w18_A           56 CIITACED-VVSLWKALDAW----QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL  130 (356)
T ss_dssp             EEEEEESS-EEEEEEESSSS----BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEE
T ss_pred             EEEEeccc-eEEEcccCCCc----cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEE
Confidence            56777755 89999987631    1112222222                         34567777777751   2456


Q ss_pred             EEeeC--------------------CCeEEEEeCCC-CeeEEEeCCccccCCccceEEEEEeC--CCCeEEEEecCCCeE
Q 024451           63 ITSSG--------------------DQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISG--SNSRMFVSGSCDSTA  119 (267)
Q Consensus        63 ~s~~~--------------------d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~s~~~d~~i  119 (267)
                      ++++.                    |+.|++|++.. ++....+     .+|...+..++|++  .++..+++++.|++|
T Consensus       131 ~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-----~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TI  205 (356)
T 2w18_A          131 LKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-----FLMPPEETILTFAEVQGMQEALLGTTIMNNI  205 (356)
T ss_dssp             EEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-----EECCCSSCEEEEEEEETSTTEEEEEETTSEE
T ss_pred             EeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-----ccCCCceeeEEeeccCCCCceEEEecCCCcE
Confidence            65443                    77777777733 4333222     24555555555554  355789999999999


Q ss_pred             EEEeCCCcccceEEeeccc---cceeEEEEecCCCEE------------EEeeCCCcEEEEeCCCCeeeEEEEeecCCCC
Q 024451          120 RLWDTRVASRAVRTFHGHE---GDVNTVKFFPDGNRF------------GTGSDDGTCRLFDIRTGHQLQVYYQQHGENE  184 (267)
Q Consensus       120 ~iwd~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l------------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  184 (267)
                      +|||++++ +.++.+.+|.   ..+.+++|+|+++++            ++|+.|++|++||..+++.+..+......++
T Consensus       206 kIWDl~TG-k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh  284 (356)
T 2w18_A          206 VIWNLKTG-QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQ  284 (356)
T ss_dssp             EEEETTTC-CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTC
T ss_pred             EEEECCCC-cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCC
Confidence            99999854 4566676543   357788999999876            5688999999999999887654321111122


Q ss_pred             CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEE-EEEECCCCCeEEEeECCCcEEEEec
Q 024451          185 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       185 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      .....+..+  ++..+++|+.||.|+|||+.+++.+..+    ..|...+. +++|+|||++|++|+.|++|+||++
T Consensus       285 ~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL----~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          285 AGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALL----PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEE----CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEe----cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            222333333  3789999999999999999998877665    35655544 6899999999999999999999985

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.1e-30  Score=212.08  Aligned_cols=219  Identities=19%  Similarity=0.266  Sum_probs=172.0

Q ss_pred             ccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCCe
Q 024451           40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDST  118 (267)
Q Consensus        40 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~  118 (267)
                      ..+.+|+..|++++|+|++ .+|++|+.|+.|++||+.++....... ....+|...|.+++|++. +++++++++.|+.
T Consensus         5 ~~~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSNWELS-DSWRAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCCEEEE-EEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             ccCcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCcceec-ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            4567999999999999975 589999999999999998653211111 112468999999999975 4678999999999


Q ss_pred             EEEEeCCCcc--------cceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEeCCCCeeeEEEEe--------ec
Q 024451          119 ARLWDTRVAS--------RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQ--------QH  180 (267)
Q Consensus       119 i~iwd~~~~~--------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------~~  180 (267)
                      |++||++...        .....+.+|...|.+++|+|+  ++++++++.|+.|++||+++++.+..+..        ..
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence            9999987532        346677789999999999999  99999999999999999987754322110        01


Q ss_pred             CCCCCCcEEEEEEccC---CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC----CeEEEeECCC
Q 024451          181 GENEIPHVTSIAFSIS---GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG----SALCTGSWDT  253 (267)
Q Consensus       181 ~~~~~~~v~~~~~s~~---~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~sgs~dg  253 (267)
                      ...+...+.+++|+|+   +..+++++.++.+.+|+....+.... . ....|...|.+++|+|++    ++|++|+.||
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg  240 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA-A-KLPGHKSLIRSISWAPSIGRWYQLIATGCKDG  240 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE-E-ECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred             cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee-e-ecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence            1123456899999997   89999999999998887665543211 1 124689999999999998    8999999999


Q ss_pred             cEEEEecCc
Q 024451          254 NLKIWAFGG  262 (267)
Q Consensus       254 ~i~~w~~~~  262 (267)
                      .|++|++..
T Consensus       241 ~i~iwd~~~  249 (351)
T 3f3f_A          241 RIRIFKITE  249 (351)
T ss_dssp             CEEEEEEEE
T ss_pred             eEEEEeCCC
Confidence            999999754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-30  Score=210.86  Aligned_cols=217  Identities=24%  Similarity=0.368  Sum_probs=176.0

Q ss_pred             CCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEe
Q 024451           34 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG  113 (267)
Q Consensus        34 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~  113 (267)
                      +.......+.+|+..|++++|+|++ .+|++++.|+.|++||+.++.....+     .+|...|.+++|++ ++++++++
T Consensus        20 G~~~~~~~l~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~s~   92 (369)
T 3zwl_B           20 GSHMKAIKLTGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLNGERLGTL-----DGHTGTIWSIDVDC-FTKYCVTG   92 (369)
T ss_dssp             CCSEEEEEEECCSSCEEEEEECTTS-CEEEEEESSSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECT-TSSEEEEE
T ss_pred             ccccccEEEEEeeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCchhhhhh-----hhcCCcEEEEEEcC-CCCEEEEE
Confidence            3344455689999999999999975 58999999999999999988777665     36888999999997 56788999


Q ss_pred             cCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeec--------
Q 024451          114 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQH--------  180 (267)
Q Consensus       114 ~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~--------  180 (267)
                      +.|+.|++||++.. +....+. +...+.++.|+|+++++++++.+     +.|++||++.......+....        
T Consensus        93 ~~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~  170 (369)
T 3zwl_B           93 SADYSIKLWDVSNG-QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII  170 (369)
T ss_dssp             ETTTEEEEEETTTC-CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred             eCCCeEEEEECCCC-cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence            99999999999754 3455555 78899999999999999999999     999999997654321111110        


Q ss_pred             CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc-cceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       181 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      .......+.+++|+|+++++++++.||.|++||+.. .+....+    ..|...|.+++|+|++++|++++.||.|++|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d  246 (369)
T 3zwl_B          171 THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI----DLHEKSISDMQFSPDLTYFITSSRDTNSFLVD  246 (369)
T ss_dssp             CCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE----ECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE----ecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence            011122689999999999999999999999999987 4444333    45888999999999999999999999999999


Q ss_pred             cCce
Q 024451          260 FGGY  263 (267)
Q Consensus       260 ~~~~  263 (267)
                      +...
T Consensus       247 ~~~~  250 (369)
T 3zwl_B          247 VSTL  250 (369)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            8653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1e-30  Score=217.20  Aligned_cols=233  Identities=21%  Similarity=0.331  Sum_probs=180.8

Q ss_pred             CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeC--------Cc
Q 024451           17 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG--------GE   88 (267)
Q Consensus        17 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--------~~   88 (267)
                      .++++++|+....       .....+.+|.+.|++++|+|.++.+|++|+.|+.|++||+.++.....+.        ..
T Consensus        21 ~~~~~~v~~~~~~-------~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   93 (408)
T 4a11_B           21 AESTRRVLGLELN-------KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRD   93 (408)
T ss_dssp             HHHHHHHHTEEEC-------TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTT
T ss_pred             ccCcceeeccccC-------cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccc
Confidence            4556778877542       24556788999999999999334689999999999999998764322221        11


Q ss_pred             cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC---CCEEEEeeCCCcEEEE
Q 024451           89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD---GNRFGTGSDDGTCRLF  165 (267)
Q Consensus        89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~iw  165 (267)
                      ...+|...|.+++|++.+.+++++++.|+.|++||++.. .....+. +...+.++.+.|.   +.++++++.|+.|++|
T Consensus        94 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (408)
T 4a11_B           94 HPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL-QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC  171 (408)
T ss_dssp             CTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT-EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred             ccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC-ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence            123589999999999867778999999999999999753 3344443 6778999999884   4599999999999999


Q ss_pred             eCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCcccee-eec-----------ccccCCccc
Q 024451          166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVV-LNL-----------GSLQNSHEG  232 (267)
Q Consensus       166 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~-~~~-----------~~~~~~~~~  232 (267)
                      |+++++....+..     +...|.+++|+|++. .+++|+.||.|++||++..... ..+           ......|..
T Consensus       172 d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (408)
T 4a11_B          172 DLKSGSCSHILQG-----HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG  246 (408)
T ss_dssp             ESSSSCCCEEECC-----CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred             eCCCcceeeeecC-----CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC
Confidence            9998876655432     334699999999998 5889999999999998765421 111           111246889


Q ss_pred             eEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          233 RITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      .|.+++|+|++++|++++.||.|++|++...
T Consensus       247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  277 (408)
T 4a11_B          247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG  277 (408)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence            9999999999999999999999999998654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.98  E-value=2.2e-30  Score=217.85  Aligned_cols=208  Identities=22%  Similarity=0.366  Sum_probs=167.5

Q ss_pred             cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC----------CeeEEEeCCccccCCccceEEEEEeCCCCeEE
Q 024451           41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----------GLRTSVFGGEFQSGHTADVLSVSISGSNSRMF  110 (267)
Q Consensus        41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  110 (267)
                      ...+|.+.|++++|+|++..++++++.||.|++||+.+          ......+     .+|...+.+++|++....++
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~~l  197 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-----RGHQKEGYGLSWNPNLNGYL  197 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-----ECCSSCCCCEEECTTSTTEE
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-----cCCCCCeEEEEeCCCCCCeE
Confidence            34689999999999997667899999999999999976          2222222     46888999999998665589


Q ss_pred             EEecCCCeEEEEeCCCccc------ceEEeeccccceeEEEEec-CCCEEEEeeCCCcEEEEeCCCCe---eeEEEEeec
Q 024451          111 VSGSCDSTARLWDTRVASR------AVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGH---QLQVYYQQH  180 (267)
Q Consensus       111 ~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~  180 (267)
                      ++++.||.|++|++.....      ....+.+|...|.+++|+| ++.+|++++.|+.|++||+++..   ....+.   
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~---  274 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD---  274 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE---
T ss_pred             EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee---
Confidence            9999999999999875221      1355668999999999999 67899999999999999998763   333322   


Q ss_pred             CCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccc-eeeecccccCCccceEEEEEECCCCC-eEEEeECCCcEEE
Q 024451          181 GENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNLKI  257 (267)
Q Consensus       181 ~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~sgs~dg~i~~  257 (267)
                        .+...+.+++|+|++. ++++|+.||.|++||++... .+..+    ..|...|.+++|+|+++ +|++++.||.|++
T Consensus       275 --~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~----~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i  348 (430)
T 2xyi_A          275 --AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF----ESHKDEIFQVQWSPHNETILASSGTDRRLHV  348 (430)
T ss_dssp             --CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE----ECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred             --cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe----ecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence              2234699999999987 68899999999999988643 23222    35889999999999985 6899999999999


Q ss_pred             EecCc
Q 024451          258 WAFGG  262 (267)
Q Consensus       258 w~~~~  262 (267)
                      |++..
T Consensus       349 wd~~~  353 (430)
T 2xyi_A          349 WDLSK  353 (430)
T ss_dssp             EEGGG
T ss_pred             EeCCC
Confidence            99864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.98  E-value=1.4e-29  Score=207.35  Aligned_cols=215  Identities=19%  Similarity=0.285  Sum_probs=165.4

Q ss_pred             cccccccCCeeeEEEEEEecCC--CeeEEEeeCCCeEEEEeCCC-CeeE-EEeCCccccCCccceEEEEEeCCCCeEEEE
Q 024451           37 PVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWDITT-GLRT-SVFGGEFQSGHTADVLSVSISGSNSRMFVS  112 (267)
Q Consensus        37 ~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~d~~v~iwd~~~-~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s  112 (267)
                      .....+.+|...|++++|+|++  +.+|++|+.|+.|++||+.+ +... ..+     .+|...|.+++|++ +++++++
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~s  103 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-----QMHTGPVLDVCWSD-DGSKVFT  103 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE-----EECSSCEEEEEECT-TSSEEEE
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe-----ccccCCEEEEEECc-CCCEEEE
Confidence            3556788999999999999975  57999999999999999987 4333 222     46889999999997 5678899


Q ss_pred             ecCCCeEEEEeCCCcccceEEeeccccceeEEEE--ecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeec----------
Q 024451          113 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF--FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH----------  180 (267)
Q Consensus       113 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------  180 (267)
                      ++.|+.|++||++...  ...+.+|...|.++.|  +|+++++++++.|+.|++||+++++.+..+....          
T Consensus       104 ~~~dg~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  181 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP  181 (368)
T ss_dssp             EETTSEEEEEETTTTE--EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT
T ss_pred             EcCCCcEEEEEcCCCC--ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC
Confidence            9999999999997533  3346679999999999  8899999999999999999998876554432111          


Q ss_pred             --------------------------CCCCCCcEEEEEEccCCCE----EEEEEeCCeEEEEeCCccc---eeeeccccc
Q 024451          181 --------------------------GENEIPHVTSIAFSISGRL----LFAGYSNGDCYVWDTLLAK---VVLNLGSLQ  227 (267)
Q Consensus       181 --------------------------~~~~~~~v~~~~~s~~~~~----l~~g~~dg~i~i~d~~~~~---~~~~~~~~~  227 (267)
                                                ..........+++.++...    +++|+.||.|++||.....   ....+    
T Consensus       182 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~----  257 (368)
T 3mmy_A          182 MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF----  257 (368)
T ss_dssp             EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE----
T ss_pred             eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee----
Confidence                                      0001123445555544443    9999999999999987652   22221    


Q ss_pred             CCccc------------eEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          228 NSHEG------------RITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       228 ~~~~~------------~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      ..|..            +|.+++|+|++++|++|+.||.|++|++...
T Consensus       258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence            23333            7999999999999999999999999998654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.1e-30  Score=230.87  Aligned_cols=214  Identities=18%  Similarity=0.249  Sum_probs=169.3

Q ss_pred             ccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC--eeEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCC
Q 024451           40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCD  116 (267)
Q Consensus        40 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d  116 (267)
                      ..+.+|++.|++++|+|++ .++++|+.||+|++||+..+  .....+     .+|...|.+++|+++. ++++++++.|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~~~~~~~~l-----~~h~~~V~~l~~s~~~~~~~l~s~s~D   76 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTL-----TGHEGPVWRVDWAHPKFGTILASCSYD   76 (753)
T ss_dssp             -----CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred             eecccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCCCCccceec-----cCCcCceEEEEecCCCCCCEEEEEeCC
Confidence            4578999999999999976 58999999999999999744  333333     4789999999998652 6789999999


Q ss_pred             CeEEEEeCCCcc-cceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEE
Q 024451          117 STARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  193 (267)
Q Consensus       117 ~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  193 (267)
                      |.|++||+.... .....+.+|...|.++.|+|+  ++.+++++.||.|++||++++........   ..+...+.+++|
T Consensus        77 g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~---~~~~~~v~~l~~  153 (753)
T 3jro_A           77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII---DAHAIGVNSASW  153 (753)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE---ECCSSCEEEEEE
T ss_pred             CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe---ecCCCceEEEEe
Confidence            999999987532 145667789999999999999  99999999999999999987743322111   123357999999


Q ss_pred             cc-------------CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC---CCeEEEeECCCcEEE
Q 024451          194 SI-------------SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD---GSALCTGSWDTNLKI  257 (267)
Q Consensus       194 s~-------------~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~sgs~dg~i~~  257 (267)
                      +|             ++..+++|+.||.|++||+...............|.++|.+++|+|+   +++|++|+.||.|++
T Consensus       154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i  233 (753)
T 3jro_A          154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII  233 (753)
T ss_dssp             CCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred             cCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence            99             58999999999999999987654322221222578999999999999   899999999999999


Q ss_pred             EecCc
Q 024451          258 WAFGG  262 (267)
Q Consensus       258 w~~~~  262 (267)
                      |++..
T Consensus       234 wd~~~  238 (753)
T 3jro_A          234 WTQDN  238 (753)
T ss_dssp             EEESS
T ss_pred             ecCCC
Confidence            99865

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-29  Score=214.27  Aligned_cols=226  Identities=15%  Similarity=0.148  Sum_probs=170.3

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCee-----eEEEEEEecCCCeeEEEeeCCCeEEEEeC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG-----YVSCCQYVPDEDTHLITSSGDQTCVLWDI   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~d~~v~iwd~   76 (267)
                      +|+|+|+|.+||+++.||+|++||...         +...+. |..     .|.+++|+|++ ++|++|+.||+|+|||+
T Consensus        90 ~vawSPdG~~LAs~s~dg~V~iwd~~~---------~l~~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~  158 (588)
T 2j04_A           90 VCKPSPIDDWMAVLSNNGNVSVFKDNK---------MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSI  158 (588)
T ss_dssp             EEEECSSSSCEEEEETTSCEEEEETTE---------EEEECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCc---------eeeecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEEC
Confidence            689999999999999999999999532         344455 555     49999999975 68999999999999999


Q ss_pred             CCCee-------EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc--ceEEe-eccccceeEEEE
Q 024451           77 TTGLR-------TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTF-HGHEGDVNTVKF  146 (267)
Q Consensus        77 ~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~~~i~~~~~  146 (267)
                      .++..       ...+.... .+|...|.+++|+|. +  +++++.|+.|++|++.....  ....+ .+|...|.+++|
T Consensus       159 ~~~~l~~~~~i~l~ti~~~~-~gh~~~V~sVawSPd-g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF  234 (588)
T 2j04_A          159 RKNSENTPEFYFESSIRLSD-AGSKDWVTHIVWYED-V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI  234 (588)
T ss_dssp             CCCTTTCCCCEEEEEEECSC-TTCCCCEEEEEEETT-E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred             CCCccccccceeeeeeeccc-ccccccEEEEEEcCC-c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence            88641       33332222 468889999999974 3  78899999999999865332  12345 478889999999


Q ss_pred             ecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEE--ccCCCEEEEEEeCCeEEEEeCCccce-----
Q 024451          147 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF--SISGRLLFAGYSNGDCYVWDTLLAKV-----  219 (267)
Q Consensus       147 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~g~~dg~i~i~d~~~~~~-----  219 (267)
                      +  ++.+|+++ |++|++||+.+++......     ++...+..+.|  +|++..+++++.+|. ++|.......     
T Consensus       235 s--g~~LASa~-~~tIkLWd~~~~~~~~~~~-----gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~  305 (588)
T 2j04_A          235 V--DYKVVLTC-PGYVHKIDLKNYSISSLKT-----GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNI  305 (588)
T ss_dssp             E--TTEEEEEC-SSEEEEEETTTTEEEEEEC-----SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCS
T ss_pred             E--CCEEEEEe-CCeEEEEECCCCeEEEEEc-----CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCce
Confidence            9  68999887 6999999998766533221     23346899999  999999999999999 9998632110     


Q ss_pred             --------ee--ec--ccc-cCCccceEEEEEECCCCCeEEEeEC
Q 024451          220 --------VL--NL--GSL-QNSHEGRITCLGLSADGSALCTGSW  251 (267)
Q Consensus       220 --------~~--~~--~~~-~~~~~~~v~~~~~~p~~~~l~sgs~  251 (267)
                              +.  +.  ..+ ...+...|.+++|+|||+.+|+++.
T Consensus       306 l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          306 IAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             SHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             EEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence                    00  00  000 1123557999999999999999874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=3.2e-28  Score=201.67  Aligned_cols=234  Identities=15%  Similarity=0.176  Sum_probs=180.9

Q ss_pred             ceeeCCCCCeE-EEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l-~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+|+|+.| ++++.|++|++||+...       .....+..|. .+.+++|+|++..++++++.|+.|++||+.++.
T Consensus        36 ~~~~s~dg~~l~~~~~~d~~i~v~d~~~~-------~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~  107 (391)
T 1l0q_A           36 GAVISPDGTKVYVANAHSNDVSIIDTATN-------NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT  107 (391)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEETTTT-------EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             eEEECCCCCEEEEECCCCCeEEEEECCCC-------eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe
Confidence            57899999876 77889999999998642       2334444444 899999999876555667778999999999887


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE-EEeeCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDD  159 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d  159 (267)
                      ....+.      +...+.++++++.+..++++++.|+.|++||++.. +....+..+ ..+.++.|+|+++++ ++++.|
T Consensus       108 ~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~  179 (391)
T 1l0q_A          108 VAGTVK------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTVSVG-RSPKGIAVTPDGTKVYVANFDS  179 (391)
T ss_dssp             EEEEEE------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECC-SSEEEEEECTTSSEEEEEETTT
T ss_pred             EEEEEe------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEecC-CCcceEEECCCCCEEEEEeCCC
Confidence            665543      33457899999766556688999999999998743 345555544 457999999999887 677889


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE---eCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  236 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  236 (267)
                      +.|++||+++++....+..      ...+.+++|+|+++++++++   .++.|++||+...+.+..+.    .|. .+.+
T Consensus       180 ~~v~~~d~~~~~~~~~~~~------~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~----~~~-~~~~  248 (391)
T 1l0q_A          180 MSISVIDTVTNSVIDTVKV------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP----VGP-DPAG  248 (391)
T ss_dssp             TEEEEEETTTTEEEEEEEC------SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE----CCS-SEEE
T ss_pred             CEEEEEECCCCeEEEEEec------CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe----cCC-CccE
Confidence            9999999998876544321      13578999999999999888   58999999998776654432    233 4789


Q ss_pred             EEECCCCCeE-EEeECCCcEEEEecCc
Q 024451          237 LGLSADGSAL-CTGSWDTNLKIWAFGG  262 (267)
Q Consensus       237 ~~~~p~~~~l-~sgs~dg~i~~w~~~~  262 (267)
                      ++|+|++++| ++++.|+.|++|++..
T Consensus       249 ~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          249 IAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            9999999987 6778899999999754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=7.4e-30  Score=212.17  Aligned_cols=252  Identities=14%  Similarity=0.105  Sum_probs=160.1

Q ss_pred             CCCCCeEEEccCCCeEEEeecCCCCCCCCC-Ccccc-cccCCeeeEEEEEE-------------------ecCCCeeEEE
Q 024451            6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGN-LPVSR-MLSGHKGYVSCCQY-------------------VPDEDTHLIT   64 (267)
Q Consensus         6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~-~~~~~-~~~~h~~~v~~~~~-------------------~~~~~~~l~s   64 (267)
                      +|++..|+.++.|+.|++|+...+...... .+... ....|...+..+.|                   .|....++++
T Consensus        27 ~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las  106 (393)
T 4gq1_A           27 SPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLAC  106 (393)
T ss_dssp             SGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEE
T ss_pred             CCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEE
Confidence            455555666677889999986543211110 00000 00112222333332                   2223467999


Q ss_pred             eeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeC-------CCCeEEEEecCCCeEEEEeCCCcccceEEeecc
Q 024451           65 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG-------SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH  137 (267)
Q Consensus        65 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~  137 (267)
                      ++.|++|+|||.+++............+|...|++++|+|       .++++|++++.|++|+|||++... ....+.+|
T Consensus       107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~-~~~~~~~~  185 (393)
T 4gq1_A          107 VCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG-PILAGYPL  185 (393)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE-EEEEEEEC
T ss_pred             EeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc-eeeeecCC
Confidence            9999999999998876543322234568999999999985       256799999999999999987543 45566678


Q ss_pred             ccceeEEEEecCC-CEEEEeeCCCcEEEEeCCCCeeeEEEEeec--------------------CCCCCCcEEEEEEc-c
Q 024451          138 EGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--------------------GENEIPHVTSIAFS-I  195 (267)
Q Consensus       138 ~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~v~~~~~s-~  195 (267)
                      ...+.+++|+|++ ++|++++.|++|++||+++++.........                    ...+...+.++.|+ +
T Consensus       186 ~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~  265 (393)
T 4gq1_A          186 SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGS  265 (393)
T ss_dssp             SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETT
T ss_pred             CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecC
Confidence            8999999999987 479999999999999998876433221110                    01123456778876 8


Q ss_pred             CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEE------------------EEEECC--CCCeEEEeECCCcE
Q 024451          196 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT------------------CLGLSA--DGSALCTGSWDTNL  255 (267)
Q Consensus       196 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~------------------~~~~~p--~~~~l~sgs~dg~i  255 (267)
                      ++..+++++.|+.+++||+...+....+.    .|...+.                  ...++|  ++.++++|+.||.|
T Consensus       266 dg~~l~s~s~d~~i~vwd~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V  341 (393)
T 4gq1_A          266 DGSGILAMCKSGAWLRWNLFANNDYNEIS----DSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLI  341 (393)
T ss_dssp             TTCEEEEECTTSEEEEEEC-----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEE
T ss_pred             CCCEEEEEeCCCCEEEEECccCCCCceEe----eecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEE
Confidence            99999999999999999987654332221    1222222                  223333  34467889999999


Q ss_pred             EEEecCc
Q 024451          256 KIWAFGG  262 (267)
Q Consensus       256 ~~w~~~~  262 (267)
                      +||+...
T Consensus       342 ~lwd~~~  348 (393)
T 4gq1_A          342 QLINTYE  348 (393)
T ss_dssp             EEEETTC
T ss_pred             EEEECCC
Confidence            9999743

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=8.8e-28  Score=201.61  Aligned_cols=235  Identities=14%  Similarity=0.155  Sum_probs=183.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+++++++++.|+.|++||+...       .....+..|...+.+++|+|++..++++++.|+.|++||+.++..
T Consensus       174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~  246 (433)
T 3bws_A          174 TISIPEHNELWVSQMQANAVHVFDLKTL-------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE  246 (433)
T ss_dssp             EEEEGGGTEEEEEEGGGTEEEEEETTTC-------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEcCCCEEEEEECCCCEEEEEECCCc-------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence            4678999999999999999999998642       244556688899999999998765556777899999999998876


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEec--------CCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  153 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  153 (267)
                      ...+.      +...+..+++++.+ +.+++++        .|+.|++||++.. +.... ..|...+.+++|+|+++.+
T Consensus       247 ~~~~~------~~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~-~~~~~-~~~~~~~~~~~~~~~g~~l  317 (433)
T 3bws_A          247 IRKTD------KIGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKE-KLIDT-IGPPGNKRHIVSGNTENKI  317 (433)
T ss_dssp             EEECC------CCSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTT-EEEEE-EEEEECEEEEEECSSTTEE
T ss_pred             EEEec------CCCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCC-cEEee-ccCCCCcceEEECCCCCEE
Confidence            65543      23458889998754 4555655        5889999998743 33333 3466688999999999754


Q ss_pred             -EEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe---------------CCeEEEEeCCcc
Q 024451          154 -GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---------------NGDCYVWDTLLA  217 (267)
Q Consensus       154 -~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---------------dg~i~i~d~~~~  217 (267)
                       ++++.|+.|++||+++++....+.  .    ...+.+++|+|+++++++++.               ||.|++||..+.
T Consensus       318 ~~~~~~~~~v~v~d~~~~~~~~~~~--~----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~  391 (433)
T 3bws_A          318 YVSDMCCSKIEVYDLKEKKVQKSIP--V----FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD  391 (433)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE--C----SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred             EEEecCCCEEEEEECCCCcEEEEec--C----CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence             666899999999999877655432  1    235889999999999988876               579999999887


Q ss_pred             ceeeecccccCCccceEEEEEECCCCCeEEEeEC-CCcEEEEecCce
Q 024451          218 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKIWAFGGY  263 (267)
Q Consensus       218 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-dg~i~~w~~~~~  263 (267)
                      +....+.     +...+.+++|+|+|++|++++. |+.|++|++.++
T Consensus       392 ~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~~  433 (433)
T 3bws_A          392 TVKEFWE-----AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDGF  433 (433)
T ss_dssp             EEEEEEE-----CSSSEEEEEECTTSCEEEEEETTTTEEEEEEETTC
T ss_pred             cEEEEec-----CCCCCceEEEcCCCCEEEEEECCCCeEEEEEecCC
Confidence            7665442     2456899999999999998875 999999998763

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.2e-27  Score=200.83  Aligned_cols=241  Identities=11%  Similarity=0.067  Sum_probs=186.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++.++++++.|++|++||+......  .......+.+|...|.+++|+|+ +.++++++.|+.|++||++++..
T Consensus       127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~~~d~~~~~~  203 (433)
T 3bws_A          127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTV--RLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANAVHVFDLKTLAY  203 (433)
T ss_dssp             CCEESSSSEEEEEBTTSSSEEEEETTTCCEE--EECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEEEEETTTCCE
T ss_pred             EEEEeCCCeEEEEeCCCCeEEEEECCCCeEe--eecCcccccccCCceeEEEEcCC-CEEEEEECCCCEEEEEECCCceE
Confidence            5789998899999999999999998653210  00011145689999999999885 46899999999999999998776


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee----
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS----  157 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----  157 (267)
                      ...+.     .|...+.++++++.+..++++++.|+.|++||++.. +....+.. ...+.+++|+|+++.+++++    
T Consensus       204 ~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~  276 (433)
T 3bws_A          204 KATVD-----LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK-LEIRKTDK-IGLPRGLLLSKDGKELYIAQFSAS  276 (433)
T ss_dssp             EEEEE-----CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEECCC-CSEEEEEEECTTSSEEEEEEEESC
T ss_pred             EEEEc-----CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC-cEEEEecC-CCCceEEEEcCCCCEEEEEECCCC
Confidence            65542     467789999999876666677778999999998743 34455544 34589999999999999887    


Q ss_pred             ----CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE-EEEEeCCeEEEEeCCccceeeecccccCCccc
Q 024451          158 ----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG  232 (267)
Q Consensus       158 ----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  232 (267)
                          .|+.|++||+++++........      ..+..++|+|+++.+ ++++.++.|++||....+....+     .+..
T Consensus       277 ~~~~~dg~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~-----~~~~  345 (433)
T 3bws_A          277 NQESGGGRLGIYSMDKEKLIDTIGPP------GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI-----PVFD  345 (433)
T ss_dssp             TTCSCCEEEEEEETTTTEEEEEEEEE------ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE-----ECSS
T ss_pred             ccccCCCeEEEEECCCCcEEeeccCC------CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe-----cCCC
Confidence                5889999999988765443211      247889999999755 56688999999999877665443     2556


Q ss_pred             eEEEEEECCCCCeEEEeEC---------------CCcEEEEecCce
Q 024451          233 RITCLGLSADGSALCTGSW---------------DTNLKIWAFGGY  263 (267)
Q Consensus       233 ~v~~~~~~p~~~~l~sgs~---------------dg~i~~w~~~~~  263 (267)
                      .+.+++|+|+|++|++++.               ||.|++|+....
T Consensus       346 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~  391 (433)
T 3bws_A          346 KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD  391 (433)
T ss_dssp             SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred             CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence            7899999999999988877               579999997543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=3.9e-27  Score=195.12  Aligned_cols=228  Identities=14%  Similarity=0.163  Sum_probs=178.0

Q ss_pred             CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451            9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE   88 (267)
Q Consensus         9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   88 (267)
                      +.++++++.|++|++||+...       .....+..|. .+.+++|+|++..++++++.|+.|++||+.+++....+.  
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~-------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--   71 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSN-------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--   71 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTT-------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--
T ss_pred             CEEEEEcCCCCEEEEEECCCC-------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--
Confidence            357899999999999998642       2445556664 489999999876555788899999999999887766553  


Q ss_pred             cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE-EEeeCCCcEEEEeC
Q 024451           89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRLFDI  167 (267)
Q Consensus        89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~  167 (267)
                          +...+.++++++.+..++++++.++.|++||+... +....+.. ...+.+++|+|+++.+ ++++.|+.|++||+
T Consensus        72 ----~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  145 (391)
T 1l0q_A           72 ----AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN-TVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINT  145 (391)
T ss_dssp             ----CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ----CCCCccceEECCCCCEEEEEECCCCEEEEEECCCC-eEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence                22378999999866666677778899999998753 34455543 4568999999999977 68888999999999


Q ss_pred             CCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE-EEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeE
Q 024451          168 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL  246 (267)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  246 (267)
                      ++++....+.. +     ..+..++|+|+++.+ +++..++.|++||+...+.....     .+...+.+++|+|++++|
T Consensus       146 ~~~~~~~~~~~-~-----~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~l  214 (391)
T 1l0q_A          146 VTKAVINTVSV-G-----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV-----KVEAAPSGIAVNPEGTKA  214 (391)
T ss_dssp             TTTEEEEEEEC-C-----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-----ECSSEEEEEEECTTSSEE
T ss_pred             CCCcEEEEEec-C-----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE-----ecCCCccceEECCCCCEE
Confidence            98876654432 1     246899999999987 56778899999999887655433     245678999999999999


Q ss_pred             EEeE---CCCcEEEEecCce
Q 024451          247 CTGS---WDTNLKIWAFGGY  263 (267)
Q Consensus       247 ~sgs---~dg~i~~w~~~~~  263 (267)
                      ++++   .|+.|++|++...
T Consensus       215 ~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          215 YVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             EEEEECSSCCEEEEEETTTT
T ss_pred             EEEecCcCCCcEEEEECCCC
Confidence            9888   6999999998643

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=1.6e-27  Score=195.47  Aligned_cols=205  Identities=11%  Similarity=0.098  Sum_probs=146.3

Q ss_pred             cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451           39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  118 (267)
Q Consensus        39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~  118 (267)
                      .....+|...|.+++|+|++ .+|++|+.| .+++||.++........       ...+..+.+.+....++++++.|+.
T Consensus        12 ~~~~~~h~~~V~~v~fs~dg-~~la~g~~~-~~~iw~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~   82 (355)
T 3vu4_A           12 IVPENHVSNPVTDYEFNQDQ-SCLILSTLK-SFEIYNVHPVAHIMSQE-------MRHLSKVRMLHRTNYVAFVTGVKEV   82 (355)
T ss_dssp             -------CCCCCEEEECTTS-SEEEEECSS-EEEEEEETTEEEEEEEE-------CSCCCEEEECTTSSEEEEECSSTTE
T ss_pred             ccccccCCCceEEEEECCCC-CEEEEEcCC-EEEEEecCCcceeeeee-------cCCeEEEEEcCCCCEEEEEECCccE
Confidence            34557899999999999976 578877766 47899988765443221       1135566677665556678888999


Q ss_pred             EEEEeCCCcccceEEeeccccceeEEEEecCC-----------------------------------CEEEE--eeCCCc
Q 024451          119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-----------------------------------NRFGT--GSDDGT  161 (267)
Q Consensus       119 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------------------------~~l~~--~~~d~~  161 (267)
                      |++||.+.. +.+..+. +...|.++.++++.                                   ++++.  ++.||.
T Consensus        83 v~iWd~~~~-~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~  160 (355)
T 3vu4_A           83 VHIWDDVKK-QDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQ  160 (355)
T ss_dssp             EEEEETTTT-EEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTC
T ss_pred             EEEEECCCC-cEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcE
Confidence            999998753 3444444 55677777776542                                   23333  567888


Q ss_pred             EEEEeCCCCee----------------eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCe-EEEEeCCccceeeecc
Q 024451          162 CRLFDIRTGHQ----------------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD-CYVWDTLLAKVVLNLG  224 (267)
Q Consensus       162 i~iwd~~~~~~----------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~  224 (267)
                      |++||+++++.                ...+     ..+...|.+++|+|++++|++|+.||. |++||+.+++.+..+.
T Consensus       161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~  235 (355)
T 3vu4_A          161 IHITKLQSSGSATTQDQGVQQKAILGKGVLI-----KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR  235 (355)
T ss_dssp             EEEEECCC------------------CCEEE-----CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCCccccccccccccccCcccEEE-----EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            88888876541                1111     234457999999999999999999998 9999998887765542


Q ss_pred             cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          225 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       225 ~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .  ..|...|.+++|+|++++|++|+.|++|++|++.
T Consensus       236 ~--g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          236 R--GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             C--TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             c--CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            0  1288999999999999999999999999999974

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=9.4e-27  Score=187.20  Aligned_cols=206  Identities=17%  Similarity=0.242  Sum_probs=157.8

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCC----------------------------------CCCCcccccccCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDK----------------------------------DGNLPVSRMLSGHKG   47 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~----------------------------------~~~~~~~~~~~~h~~   47 (267)
                      +++|+|+|++|++|+.|++|++|++......                                  .........+.+|..
T Consensus        72 ~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (318)
T 4ggc_A           72 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ  151 (318)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred             EEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccC
Confidence            5789999999999999999999998753100                                  000112345678899


Q ss_pred             eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEE--EEecCCCeEEEEeCC
Q 024451           48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF--VSGSCDSTARLWDTR  125 (267)
Q Consensus        48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~s~~~d~~i~iwd~~  125 (267)
                      .+.++.+.+.+ .++++++.|++|++||+.++....... .....+...+.++.+.+.....+  ++++.++.|++||.+
T Consensus       152 ~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~  229 (318)
T 4ggc_A          152 EVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPL-QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC  229 (318)
T ss_dssp             CEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCS-EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT
T ss_pred             ceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccce-eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc
Confidence            99999999875 589999999999999998754322111 11235677888998887666554  467789999999987


Q ss_pred             CcccceEEeeccccceeEEEEecCCCEEEEee--CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE
Q 024451          126 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG  203 (267)
Q Consensus       126 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g  203 (267)
                      ...  ......+...+..+.|+|+++.+++++  .|+.|++||+++++.+..+..     +...|.+++|+|++++|++|
T Consensus       230 ~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g-----H~~~V~~l~~spdg~~l~S~  302 (318)
T 4ggc_A          230 SGA--CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----HTSRVLSLTMSPDGATVASA  302 (318)
T ss_dssp             TCC--EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-----CSSCEEEEEECTTSSCEEEE
T ss_pred             ccc--ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC-----CCCCEEEEEEcCCCCEEEEE
Confidence            533  233345677899999999998887654  899999999999887765532     34579999999999999999


Q ss_pred             EeCCeEEEEeCCc
Q 024451          204 YSNGDCYVWDTLL  216 (267)
Q Consensus       204 ~~dg~i~i~d~~~  216 (267)
                      +.||.|++||+..
T Consensus       303 s~D~~v~iWd~~~  315 (318)
T 4ggc_A          303 AADETLRLWRCFE  315 (318)
T ss_dssp             ETTTEEEEECCSC
T ss_pred             ecCCeEEEEECCC
Confidence            9999999999754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.5e-27  Score=189.00  Aligned_cols=182  Identities=14%  Similarity=0.153  Sum_probs=128.8

Q ss_pred             CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEec--CCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCc
Q 024451           17 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP--DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT   94 (267)
Q Consensus        17 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~   94 (267)
                      .|++|++|++.+.    +  .....+.+|...++.++|+|  .+..+|++++.|++|||||+.+++.+..+.+.  ..+.
T Consensus       155 ~d~~V~~~~~s~d----G--~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~--~~~v  226 (356)
T 2w18_A          155 SDQQVEVMTFAED----G--GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID--DSYQ  226 (356)
T ss_dssp             TTCEEEEEEECTT----S--CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC--C---
T ss_pred             CCCcEEEEEECCC----C--ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC--Ccce
Confidence            4888888887432    1  13445667888888888877  23468999999999999999999887777421  1123


Q ss_pred             cceEEEEEeCCCCeEE------------EEecCCCeEEEEeCCCcccceEEe-----eccccceeEEEEecCCCEEEEee
Q 024451           95 ADVLSVSISGSNSRMF------------VSGSCDSTARLWDTRVASRAVRTF-----HGHEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus        95 ~~i~~~~~~~~~~~~~------------~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~  157 (267)
                      ..+.+++|+|. ++++            ++|+.|++|++||.... +.+..+     .+|...+.+..+  ++..+++++
T Consensus       227 ~~v~~vafSpd-G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg-k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS  302 (356)
T 2w18_A          227 ASVCHKAYSEM-GLLFIVLSHPCAKESESLRSPVFQLIVINPKTT-LSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAIL  302 (356)
T ss_dssp             CCCEEEEEEET-TEEEEEEC------------CCEEEEEEETTTT-EEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEE
T ss_pred             eeeEEEEECCC-CCEEEEeccCCCcceeeccCCCcEEEEEECCCC-EEEEEEEeeccCCCcceeEcccc--CCCEEEEEc
Confidence            45667788864 4444            67889999999998743 333333     366555444443  478899999


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  214 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~  214 (267)
                      .|++|+|||+.+++.+..+..+..    ..+..++|+|+|++|++|+.|+.|+|||.
T Consensus       303 ~DgTIkIWDl~tGk~l~tL~gH~~----~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          303 TSGTIAIWDLLLGQCTALLPPVSD----QHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTSCEEEEETTTCSEEEEECCC------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCcEEEEECCCCcEEEEecCCCC----CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            999999999999988776532211    23456899999999999999999999984

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=8.3e-24  Score=176.92  Aligned_cols=225  Identities=15%  Similarity=0.115  Sum_probs=169.3

Q ss_pred             CCeEEEccCC------CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC---eEEEEeCCCC
Q 024451            9 GQSVACGGLD------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ---TCVLWDITTG   79 (267)
Q Consensus         9 g~~l~~~~~d------~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~   79 (267)
                      +..++.++.+      ++|++||+...        ..+.+.+|...|.+++|+|++ ++|++++.|+   .|++||+.++
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~--------~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg  213 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGY--------NQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANG  213 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSC--------SCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTC
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCC--------CCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCC
Confidence            6667666654      79999998531        235567899999999999976 4788888875   9999999988


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe--EEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  157 (267)
                      ......      .|...+.+++|+|.+..++++++.++.  |++||++..  ....+..|...+.++.|+|+|+.|+.++
T Consensus       214 ~~~~l~------~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~spdg~~l~~~s  285 (415)
T 2hqs_A          214 AVRQVA------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG--QIRQVTDGRSNNTEPTWFPDSQNLAFTS  285 (415)
T ss_dssp             CEEEEE------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CEEECCCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cEEEee------cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC--CEEeCcCCCCcccceEECCCCCEEEEEE
Confidence            665432      356678899999765545547766654  999998743  3456677888899999999999998887


Q ss_pred             C-CC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC---CeEEEEeCCccceeeecccccCCcc
Q 024451          158 D-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHE  231 (267)
Q Consensus       158 ~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~  231 (267)
                      . ++  .|.+||+.+++... +.     .....+.+++|+|+|++|++++.+   ..|++||+.+++... +    ..+.
T Consensus       286 ~~~g~~~i~~~d~~~~~~~~-l~-----~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l----~~~~  354 (415)
T 2hqs_A          286 DQAGRPQVYKVNINGGAPQR-IT-----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-L----SSTF  354 (415)
T ss_dssp             CTTSSCEEEEEETTSSCCEE-CC-----CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-C----CCSS
T ss_pred             CCCCCcEEEEEECCCCCEEE-Ee-----cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-e----cCCC
Confidence            6 45  67777988765322 11     122367899999999999988764   589999988765432 2    2233


Q ss_pred             ceEEEEEECCCCCeEEEeECCC---cEEEEecCc
Q 024451          232 GRITCLGLSADGSALCTGSWDT---NLKIWAFGG  262 (267)
Q Consensus       232 ~~v~~~~~~p~~~~l~sgs~dg---~i~~w~~~~  262 (267)
                       .+.+++|+|+|++|++++.|+   .|.+|++.+
T Consensus       355 -~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g  387 (415)
T 2hqs_A          355 -LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  387 (415)
T ss_dssp             -SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             -CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence             789999999999999988877   799998755

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=5.7e-23  Score=177.18  Aligned_cols=250  Identities=11%  Similarity=0.044  Sum_probs=177.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEec----CCCeeEEEee-CCCeEEEEeC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP----DEDTHLITSS-GDQTCVLWDI   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~s~~-~d~~v~iwd~   76 (267)
                      .++|+|+|++|++++.|++|++||+...+     ..+...+. +...+..++|+|    ++. ++++++ .+++|.+||.
T Consensus       183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~t-----~~~~~~i~-~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~  255 (543)
T 1nir_A          183 ISRMSASGRYLLVIGRDARIDMIDLWAKE-----PTKVAEIK-IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDG  255 (543)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSS-----CEEEEEEE-CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEET
T ss_pred             eEEECCCCCEEEEECCCCeEEEEECcCCC-----CcEEEEEe-cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEec
Confidence            36799999999999999999999983111     12344444 334578999999    875 566666 5899999999


Q ss_pred             CCCeeEEEeCCccc-----cCC-ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCC
Q 024451           77 TTGLRTSVFGGEFQ-----SGH-TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG  150 (267)
Q Consensus        77 ~~~~~~~~~~~~~~-----~~~-~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~  150 (267)
                      .+.+.+..+.....     ..| ...+..+.+++.+..++++...++.|.+||.............+...+..+.|+|++
T Consensus       256 ~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg  335 (543)
T 1nir_A          256 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSH  335 (543)
T ss_dssp             TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTS
T ss_pred             cccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCC
Confidence            99877666542110     002 336788999987778888899999999999875332221122355668899999999


Q ss_pred             CEEEEe-eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC-CCEEEEEE-eCCeEEEEeCCc-------ccee
Q 024451          151 NRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGY-SNGDCYVWDTLL-------AKVV  220 (267)
Q Consensus       151 ~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~-~dg~i~i~d~~~-------~~~~  220 (267)
                      ++++++ ..+++|.+||+++++....+... ...+......+ ++|+ +..++++. .|+.|.+||..+       .+.+
T Consensus       336 ~~l~va~~~~~~v~v~D~~tg~l~~~i~~g-~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v  413 (543)
T 1nir_A          336 RYFMTAANNSNKVAVIDSKDRRLSALVDVG-KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV  413 (543)
T ss_dssp             CEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred             CEEEEEecCCCeEEEEECCCCeEEEeeccC-CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEE
Confidence            987655 46899999999998876654321 11111112222 4677 55666665 579999999877       5555


Q ss_pred             eecccccCCccceEEEEEECCCCCeEEEeE-------CCCcEEEEecCceE
Q 024451          221 LNLGSLQNSHEGRITCLGLSADGSALCTGS-------WDTNLKIWAFGGYR  264 (267)
Q Consensus       221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-------~dg~i~~w~~~~~~  264 (267)
                      ..+    ..|...+..++++|+|++|++++       .+++|.+||...+.
T Consensus       414 ~~l----~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          414 AEL----QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             EEE----ECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             EEE----EcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence            444    34666778899999999999987       27899999987543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1.6e-22  Score=164.03  Aligned_cols=245  Identities=11%  Similarity=0.081  Sum_probs=160.0

Q ss_pred             ceeeCCCCCeEEEccCC-CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC-
Q 024451            2 TCAFSPTGQSVACGGLD-SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-   79 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d-~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-   79 (267)
                      .++|+|+|++|++++.+ +.+.+|++....   +.......+..+. .+..++|+|++..+++++..++.|.+||+..+ 
T Consensus        42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~  117 (343)
T 1ri6_A           42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDD---GALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL  117 (343)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEEECTTT---CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred             eEEECCCCCEEEEeecCCCeEEEEEecCCC---CceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc
Confidence            57899999988888876 999999986321   1122223333333 67889999987544445556899999999433 


Q ss_pred             --eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE----Eeec-cccceeEEEEecCCCE
Q 024451           80 --LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR----TFHG-HEGDVNTVKFFPDGNR  152 (267)
Q Consensus        80 --~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~----~~~~-~~~~i~~~~~~~~~~~  152 (267)
                        .....+.      ....+..+++++....++++...++.|++||+....+...    .... ....+..++|+|++++
T Consensus       118 ~~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~  191 (343)
T 1ri6_A          118 PVGVVDVVE------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  191 (343)
T ss_dssp             EEEEEEEEC------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             ccccccccc------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE
Confidence              2222221      2234777889876555555554899999999874232221    2222 2346788999999997


Q ss_pred             EEEe-eCCCcEEEEeCCC--Ceee--EEEEeec-CCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCc----cceee
Q 024451          153 FGTG-SDDGTCRLFDIRT--GHQL--QVYYQQH-GENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLL----AKVVL  221 (267)
Q Consensus       153 l~~~-~~d~~i~iwd~~~--~~~~--~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~----~~~~~  221 (267)
                      ++++ ..++.|.+||++.  ++..  ....... .......+..++|+|++++++++. .++.|++||+..    .+.+.
T Consensus       192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~  271 (343)
T 1ri6_A          192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG  271 (343)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence            7555 4889999999954  3221  1111100 111123567899999999887554 789999999872    22222


Q ss_pred             ecccccCCccceEEEEEECCCCCeEEEeE-CCCcEEEEecC
Q 024451          222 NLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAFG  261 (267)
Q Consensus       222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~  261 (267)
                      ..    ..+. .+..++|+|+|++|++++ .|+.+.+|+++
T Consensus       272 ~~----~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          272 FQ----PTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EE----ECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             ee----cCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            11    1222 377899999999888877 58999999653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=5.6e-22  Score=165.81  Aligned_cols=213  Identities=14%  Similarity=0.076  Sum_probs=157.8

Q ss_pred             ceeeCCCCCeEEEccCCC---eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe--EEEEeC
Q 024451            2 TCAFSPTGQSVACGGLDS---VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT--CVLWDI   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~---~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~--v~iwd~   76 (267)
                      +++|+|+|+.|++++.|+   .|++||+....        ...+..|...+.+++|+|++..++++++.|+.  |++||+
T Consensus       183 ~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--------~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~  254 (415)
T 2hqs_A          183 SPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  254 (415)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCC--------EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--------EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEEC
Confidence            578999999999999886   99999986421        23456788899999999987654447776654  999999


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC-CC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEE
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  153 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  153 (267)
                      .++.....      ..|...+.++.|+|.+ +.++.++. ++  .|.+||+...  ....+..+...+.+++|+|+|+++
T Consensus       255 ~~~~~~~l------~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~spdG~~l  325 (415)
T 2hqs_A          255 ASGQIRQV------TDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGG--APQRITWEGSQNQDADVSSDGKFM  325 (415)
T ss_dssp             TTCCEEEC------CCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSS--CCEECCCSSSEEEEEEECTTSSEE
T ss_pred             CCCCEEeC------cCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCC--CEEEEecCCCcccCeEECCCCCEE
Confidence            88764322      2466778899999754 55555554 55  5777787643  234455566778899999999999


Q ss_pred             EEeeCC---CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC---eEEEEeCCccceeeeccccc
Q 024451          154 GTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQ  227 (267)
Q Consensus       154 ~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~  227 (267)
                      +.++.+   ..|.+||+.+++... +. .    . ..+.+++|+|+|+.|+.++.++   .|++||+.... ...+    
T Consensus       326 ~~~~~~~g~~~i~~~d~~~~~~~~-l~-~----~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l----  393 (415)
T 2hqs_A          326 VMVSSNGGQQHIAKQDLATGGVQV-LS-S----T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARL----  393 (415)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEE-CC-C----S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEEC----
T ss_pred             EEEECcCCceEEEEEECCCCCEEE-ec-C----C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEe----
Confidence            988764   589999998876532 11 1    1 1578999999999999988776   89999986433 2222    


Q ss_pred             CCccceEEEEEECCCC
Q 024451          228 NSHEGRITCLGLSADG  243 (267)
Q Consensus       228 ~~~~~~v~~~~~~p~~  243 (267)
                      ..|.+.|.+++|+|.-
T Consensus       394 ~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          394 PATDGQVKFPAWSPYL  409 (415)
T ss_dssp             CCSSSEEEEEEECCCC
T ss_pred             eCCCCCCcCCcccccc
Confidence            4688899999999964

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1.4e-22  Score=160.66  Aligned_cols=229  Identities=15%  Similarity=0.129  Sum_probs=160.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCC-CCCCCCCCcccccccCC-eeeEEEEEEecCCCeeEEEee--CCCeEEEEe--
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNS-PTDKDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSS--GDQTCVLWD--   75 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~--~d~~v~iwd--   75 (267)
                      +++|+|+|++|++++ ++.|.+||+.. ..       ......+| ...+.+++|+|++ .+|++++  .++..+||.  
T Consensus        46 ~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~  116 (297)
T 2ojh_A           46 APNWSPDGKYLLLNS-EGLLYRLSLAGDPS-------PEKVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLP  116 (297)
T ss_dssp             EEEECTTSSEEEEEE-TTEEEEEESSSCCS-------CEECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEE
T ss_pred             eeEECCCCCEEEEEc-CCeEEEEeCCCCCC-------ceEeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEE
Confidence            578999999999987 78999999865 22       22333444 4678899999976 4677777  334555554  


Q ss_pred             CCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEE
Q 024451           76 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT  155 (267)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  155 (267)
                      ..++... .+.      +...+..+.|++.+..+++++..++.+++|++.........+..+...+.++.|+|++++++.
T Consensus       117 ~~~~~~~-~~~------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  189 (297)
T 2ojh_A          117 STGGTPR-LMT------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYF  189 (297)
T ss_dssp             TTCCCCE-ECC------SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEE
T ss_pred             CCCCceE-Eee------cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEE
Confidence            4444322 221      222377888987655555588889999999865433445566677788999999999998877


Q ss_pred             ee-CCCcEEEEeCC-CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-----------CeEEEEeCCccceeee
Q 024451          156 GS-DDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----------GDCYVWDTLLAKVVLN  222 (267)
Q Consensus       156 ~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-----------g~i~i~d~~~~~~~~~  222 (267)
                      ++ .|+.+++|+++ .+.....+.     .....+..++|+|++++|++++.+           +.|++||+...+....
T Consensus       190 ~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~  264 (297)
T 2ojh_A          190 NSSRTGQMQIWRVRVDGSSVERIT-----DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL  264 (297)
T ss_dssp             EECTTSSCEEEEEETTSSCEEECC-----CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred             EecCCCCccEEEECCCCCCcEEEe-----cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence            66 58999999986 333332221     122457889999999999888765           5699999876554221


Q ss_pred             cccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451          223 LGSLQNSHEGRITCLGLSADGSALCTGSWDT  253 (267)
Q Consensus       223 ~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg  253 (267)
                      . .. ..|...+.+++|+|++++|++++.|.
T Consensus       265 ~-~~-~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          265 F-DL-FGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             E-EE-EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             e-cc-CCCCcccccceECCCCCEEEEEEecc
Confidence            1 11 24667788999999999999887764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=8.2e-23  Score=171.69  Aligned_cols=210  Identities=14%  Similarity=0.055  Sum_probs=148.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCC---C-CCCCcc----cccccCCeeeEEEEEEecCCCeeEE----EeeCCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTD---K-DGNLPV----SRMLSGHKGYVSCCQYVPDEDTHLI----TSSGDQ   69 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~---~-~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~l~----s~~~d~   69 (267)
                      .+++++++.++++++.|+ +++|+...-..   . ......    ......|...|.+++|+|++ .+|+    +++.|+
T Consensus        41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~lav~~~sgs~d~  118 (434)
T 2oit_A           41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN-LTLSACMMSSEYGS  118 (434)
T ss_dssp             CEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS-CEEEEEEEETTTEE
T ss_pred             EEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC-CEEEEEEeccCCCc
Confidence            367899999999999998 89987532100   0 000000    00112356789999999986 4677    899999


Q ss_pred             eEEEEeCCCC--------eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccce
Q 024451           70 TCVLWDITTG--------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV  141 (267)
Q Consensus        70 ~v~iwd~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i  141 (267)
                      +|++||+.+.        .....+  ....+|...|.+++|+|....++++++.||.|++||++.. .......+|...|
T Consensus       119 ~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~~~~~~~~~~v  195 (434)
T 2oit_A          119 IIAFFDVRTFSNEAKQQKRPFAYH--KLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKVCATLPSTVAV  195 (434)
T ss_dssp             EEEEEEHHHHHCTTCSSCCCSEEE--ECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEEEEEECGGGCE
T ss_pred             eEEEEEccccccCCcCCcceeeee--eccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cceeeccCCCCce
Confidence            9999998653        111111  1234688999999999876788999999999999999854 3344456788899


Q ss_pred             eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCC--CCCCcEEEEEEccCCCEEEEEE-eCC------eEEEE
Q 024451          142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISGRLLFAGY-SNG------DCYVW  212 (267)
Q Consensus       142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~g~-~dg------~i~i~  212 (267)
                      .+++|+|+|++|++|+.|++|++||++ ++....+......  .+...+.+++|++++.++++.. .+|      .+++|
T Consensus       196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~  274 (434)
T 2oit_A          196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA  274 (434)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence            999999999999999999999999998 4443333221111  1123689999999888776543 333      38999


Q ss_pred             eCCcc
Q 024451          213 DTLLA  217 (267)
Q Consensus       213 d~~~~  217 (267)
                      ++...
T Consensus       275 ~l~~~  279 (434)
T 2oit_A          275 LLPKK  279 (434)
T ss_dssp             ECCCT
T ss_pred             EeccC
Confidence            98654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=9e-22  Score=159.25  Aligned_cols=243  Identities=13%  Similarity=0.132  Sum_probs=164.1

Q ss_pred             ceeeCCCCCeEEEccC-CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC-C--eEEEEeCC
Q 024451            2 TCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-Q--TCVLWDIT   77 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~-d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-~--~v~iwd~~   77 (267)
                      .++|+|+|++++.++. ++.|.+||.....     . ....+..+..+..+++|+|++. +++++..+ +  .|.+||+.
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-----~-~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~  116 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEP-----P-KVVAIQEGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFL  116 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSS-----C-EEEEEEECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETT
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCc-----e-eEEecccCCCCccceEECCCCC-EEEEecCCCCcccEEEEECC
Confidence            4689999986655554 8999999986532     1 1344555666666689999764 56655555 3  89999999


Q ss_pred             CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe-EEEEeCCCcccce---EEeeccccceeEEEEecCCCEE
Q 024451           78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST-ARLWDTRVASRAV---RTFHGHEGDVNTVKFFPDGNRF  153 (267)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~-i~iwd~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l  153 (267)
                      ++.....+.      .......++++|.+..++++...++. +.+|++.......   ............++|+|+++++
T Consensus       117 ~~~~~~~~~------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l  190 (331)
T 3u4y_A          117 KNKFISTIP------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFA  190 (331)
T ss_dssp             TTEEEEEEE------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEE
T ss_pred             CCCeEEEEE------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEE
Confidence            887665543      22345789999866567777777778 9999986432211   1112334557899999999965


Q ss_pred             E-EeeCCCcEEEEeCCCCee---eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccce--eeecccc
Q 024451          154 G-TGSDDGTCRLFDIRTGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKV--VLNLGSL  226 (267)
Q Consensus       154 ~-~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~--~~~~~~~  226 (267)
                      + ++..++.|.+||+++++.   +..+..      ...+..++|+|++++++++. .++.|.+||..+++.  +.....-
T Consensus       191 ~v~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~  264 (331)
T 3u4y_A          191 FVANLIGNSIGILETQNPENITLLNAVGT------NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG  264 (331)
T ss_dssp             EEEETTTTEEEEEECSSTTSCEEEEEEEC------SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred             EEEeCCCCeEEEEECCCCcccceeeeccC------CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc
Confidence            4 455789999999998776   433321      12457889999999776665 477899999887665  2111100


Q ss_pred             ---cCCccceEEEEEECCCCCeEEEeEC-CCcEEEEecCce
Q 024451          227 ---QNSHEGRITCLGLSADGSALCTGSW-DTNLKIWAFGGY  263 (267)
Q Consensus       227 ---~~~~~~~v~~~~~~p~~~~l~sgs~-dg~i~~w~~~~~  263 (267)
                         ..........++|+|+|++|+.++. ++.|.+|++.+.
T Consensus       265 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          265 LLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             CCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             cccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence               0111112256899999998866554 669999998653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=4.1e-21  Score=157.47  Aligned_cols=251  Identities=11%  Similarity=0.051  Sum_probs=160.0

Q ss_pred             ceeeCCCCCeEEEccCC----CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEe-eCCCeEEEEeC
Q 024451            2 TCAFSPTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDI   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d----~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~d~~v~iwd~   76 (267)
                      .++|+|+|++|++++.+    +.+.+|++....   +..........+......+++  ++. +|+++ ..++.|.+|++
T Consensus        54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~---g~~~~~~~~~~~~~~p~~~~~--dg~-~l~~~~~~~~~v~~~~~  127 (361)
T 3scy_A           54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK---GTLHLLNTQKTMGADPCYLTT--NGK-NIVTANYSGGSITVFPI  127 (361)
T ss_dssp             SEEECTTSSEEEEEECCSSTTCEEEEEEEETTT---TEEEEEEEEECSSSCEEEEEE--CSS-EEEEEETTTTEEEEEEB
T ss_pred             eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC---CcEEEeeEeccCCCCcEEEEE--CCC-EEEEEECCCCEEEEEEe
Confidence            36899999999998886    799999986531   112222223334444555666  444 45554 46899999999


Q ss_pred             CCCeeEEEe------CCcc---ccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc------c------eEEee
Q 024451           77 TTGLRTSVF------GGEF---QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR------A------VRTFH  135 (267)
Q Consensus        77 ~~~~~~~~~------~~~~---~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~------~------~~~~~  135 (267)
                      .........      .+..   ...+...+.+++++|....++++...++.|++|++.....      .      .....
T Consensus       128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (361)
T 3scy_A          128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV  207 (361)
T ss_dssp             CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred             CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence            753221111      0000   0112334578899976555666666788999998764331      1      11122


Q ss_pred             ccccceeEEEEecCCCEEEEee-CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC--CeEEEE
Q 024451          136 GHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN--GDCYVW  212 (267)
Q Consensus       136 ~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d--g~i~i~  212 (267)
                      .+......++|+|+|+++++++ .++.|.+||+++++...................++|+|+|++|+++..+  +.|.+|
T Consensus       208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~  287 (361)
T 3scy_A          208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF  287 (361)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred             CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence            3345578999999999887776 6899999999876542222111112222346899999999999776654  899999


Q ss_pred             eCC--ccceeeecccccCCccceEEEEEECCCCCeEEEeE-CCCcEEEEecC
Q 024451          213 DTL--LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAFG  261 (267)
Q Consensus       213 d~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~  261 (267)
                      ++.  .++.. .......  ...+..++|+|+|++|++++ .++.|.+|.++
T Consensus       288 ~~~~~~g~~~-~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          288 KVDETNGTLT-KVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             EECTTTCCEE-EEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             EEcCCCCcEE-EeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            975  22211 1111111  34567899999999998887 57899998664

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=3.6e-21  Score=156.88  Aligned_cols=250  Identities=10%  Similarity=0.053  Sum_probs=159.2

Q ss_pred             ceeeCCCCCeEEEccC---CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee-CCCeEEEEeCC
Q 024451            2 TCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDIT   77 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d~~v~iwd~~   77 (267)
                      .++|+|+|+ |++++.   ++.|.+|++....     ......+..+...+..++|+|++. +|++++ .++.|++|++.
T Consensus        44 ~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~-----~~~~~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           44 YLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT-----AHKLNTVVAPGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             CEEECTTCE-EEEEEEETTEEEEEEEEEETTE-----EEEEEEEEEESCCCSEEEEETTTT-EEEEEETTTTEEEEEEEC
T ss_pred             eEEEccCCe-EEEEEecCCCceEEEEEecCCc-----EEEeeeeecCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeC
Confidence            478999999 555443   6899999985321     122233344666778899999875 566665 78999999996


Q ss_pred             C-Cee--EEEeCCccc----cCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc--eEEeecc-ccceeEEEEe
Q 024451           78 T-GLR--TSVFGGEFQ----SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--VRTFHGH-EGDVNTVKFF  147 (267)
Q Consensus        78 ~-~~~--~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--~~~~~~~-~~~i~~~~~~  147 (267)
                      . +..  ...+.....    ......+..++++|... ++++...++.|++|++......  ...+..+ ......++|+
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s  195 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS  195 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence            3 221  111110000    01223477899997554 7777778899999998732221  1112222 2357789999


Q ss_pred             cCCCEEEE-eeCCCcEEEEeCCC--CeeeEEEEeecCCC---CCCcEEEEEEccCCCEEEE-EEeCCeEEEEeCCcccee
Q 024451          148 PDGNRFGT-GSDDGTCRLFDIRT--GHQLQVYYQQHGEN---EIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       148 ~~~~~l~~-~~~d~~i~iwd~~~--~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~-g~~dg~i~i~d~~~~~~~  220 (267)
                      |+|+++++ ...++.+.+|+++.  ++............   ....+..++|+|+|++|++ ...++.|.+||+......
T Consensus       196 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~  275 (347)
T 3hfq_A          196 PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL  275 (347)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCE
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcE
Confidence            99996655 56788999999874  43221111111110   1134788999999998855 455899999998633211


Q ss_pred             eecccccCCccceEEEEEECCCCCeEEEeECC-CcEEEEec
Q 024451          221 LNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TNLKIWAF  260 (267)
Q Consensus       221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-g~i~~w~~  260 (267)
                      .....+ ..+...+..++|+|+|++|++++.+ +.|.+|++
T Consensus       276 ~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          276 TLIQQI-STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             EEEEEE-ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEeEEE-ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            111111 2344557889999999999888765 89999965

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=9.2e-21  Score=154.40  Aligned_cols=247  Identities=11%  Similarity=0.076  Sum_probs=173.4

Q ss_pred             ceeeCCCCCeEEEccC-------CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEE
Q 024451            2 TCAFSPTGQSVACGGL-------DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW   74 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~-------d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iw   74 (267)
                      .++|+|+|+.+++++.       ++.|.+||.....       ....+.. ...+..+.|+|++..++++...++.|.+|
T Consensus        45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE-------VTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI  116 (353)
T ss_dssp             EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC-------EEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe-------EEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence            4679999988888774       5789999976421       2222221 23356788999876666677778999999


Q ss_pred             eCCCCeeEEEeCCcccc----CCccceEEEEEeCCCCeEEEEe-cCCCeEEEEeCCCcccceEEeeccccceeEEEEecC
Q 024451           75 DITTGLRTSVFGGEFQS----GHTADVLSVSISGSNSRMFVSG-SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD  149 (267)
Q Consensus        75 d~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  149 (267)
                      |..++.....+......    .....+..+.+++.+..++++. +.++.|.+||.+.. +....+..+...+..+.|+|+
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~s~d  195 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI-KLKTAIQNTGKMSTGLALDSE  195 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT-EEEEEECCCCTTCCCCEEETT
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC-ceEEEecCCCCccceEEECCC
Confidence            99988766555321100    0011267788998666666555 45889999998743 345555445556889999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCccceeeecccccC
Q 024451          150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQN  228 (267)
Q Consensus       150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~  228 (267)
                      +++++++..++.|.+||+.+++....+.. ........+..++|+|+++.++++.. ++.|++||..+++.......   
T Consensus       196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---  271 (353)
T 3vgz_A          196 GKRLYTTNADGELITIDTADNKILSRKKL-LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA---  271 (353)
T ss_dssp             TTEEEEECTTSEEEEEETTTTEEEEEEEC-CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC---
T ss_pred             CCEEEEEcCCCeEEEEECCCCeEEEEEEc-CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc---
Confidence            99999999999999999998876654432 11122345788999999998877765 49999999988776554421   


Q ss_pred             CccceEEEEEECCCCCeEEEeE-CCCcEEEEecCceE
Q 024451          229 SHEGRITCLGLSADGSALCTGS-WDTNLKIWAFGGYR  264 (267)
Q Consensus       229 ~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~~~~  264 (267)
                       .. + ..++|+|+|++++.++ .++.|.+|+.....
T Consensus       272 -~~-~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          272 -PE-S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             -SS-C-CCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             -CC-C-ceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence             11 1 4689999999665555 69999999985443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=2.4e-21  Score=167.11  Aligned_cols=236  Identities=13%  Similarity=0.123  Sum_probs=168.3

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccccc-CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC--CCCe
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGL   80 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~--~~~~   80 (267)
                      +|+|++..+++++.|++|.+||....       .+...+. +|.  +++++|+|++ ++|++++.|++|++||+  .++.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~-------~~~~~i~~g~~--~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~  213 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSK-------KIVKVIDTGYA--VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPT  213 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTC-------CEEEEEECSTT--EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCc-------eEEEEEecCcc--cceEEECCCC-CEEEEECCCCeEEEEECcCCCCc
Confidence            47899999999999999999997642       2444555 444  8899999976 58999999999999999  7776


Q ss_pred             eEEEeCCccccCCccceEEEEEeC----CCCeEEEEec-CCCeEEEEeCCCcccceEEeec----------c-ccceeEE
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISG----SNSRMFVSGS-CDSTARLWDTRVASRAVRTFHG----------H-EGDVNTV  144 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~s~~-~d~~i~iwd~~~~~~~~~~~~~----------~-~~~i~~~  144 (267)
                      ....+.      +...+..+++++    .+ +++++++ .+++|.+||.... +.+..+..          | ...+..+
T Consensus       214 ~~~~i~------~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~~~~~~~~~~~v~~i  285 (543)
T 1nir_A          214 KVAEIK------IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAI  285 (543)
T ss_dssp             EEEEEE------CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred             EEEEEe------cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEecccc-ccceeecccCcccCccccccCCceEEE
Confidence            555442      234568899986    54 4455554 6899999998643 34444433          2 2368899


Q ss_pred             EEecCCCE-EEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeee
Q 024451          145 KFFPDGNR-FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLN  222 (267)
Q Consensus       145 ~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~  222 (267)
                      .++|+++. +++...+++|.+||..+.+.+.......    ...+..+.|+|++++++++. .++.|.+||..+++....
T Consensus       286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~----~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~  361 (543)
T 1nir_A          286 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA----APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL  361 (543)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC----CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc----CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEe
Confidence            99997665 5666789999999998765543211111    12467889999999877655 589999999998877655


Q ss_pred             cccccCCccceEEEEEECCC-CCeEEEeE-CCCcEEEEecCc
Q 024451          223 LGSLQNSHEGRITCLGLSAD-GSALCTGS-WDTNLKIWAFGG  262 (267)
Q Consensus       223 ~~~~~~~~~~~v~~~~~~p~-~~~l~sgs-~dg~i~~w~~~~  262 (267)
                      +..-...|.+....+ ++|+ +..+++++ .|++|++|+...
T Consensus       362 i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          362 VDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             EECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             eccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence            432223465443333 4676 67777775 589999999754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=1.6e-21  Score=154.55  Aligned_cols=224  Identities=14%  Similarity=0.153  Sum_probs=155.2

Q ss_pred             EccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC-CeeEEEeCCccccC
Q 024451           14 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFGGEFQSG   92 (267)
Q Consensus        14 ~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~   92 (267)
                      +++.|++|++||+...        ....+..|...|.+++|+|++. +|++++ ++.|++||+.+ +.......    ..
T Consensus        17 ~~~~~~~i~~~d~~~~--------~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~----~~   82 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR--------KMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDT----GF   82 (297)
T ss_dssp             -CCCCEEEEEEETTTT--------EEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEECCC----TT
T ss_pred             CCCcceeEEEEeCCCC--------ceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEecc----cc
Confidence            4578999999998642        1234556888999999999764 677765 88999999998 65544332    11


Q ss_pred             CccceEEEEEeCCCCeEEEEec--CCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE-EeeCCCcEEEEeCCC
Q 024451           93 HTADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDDGTCRLFDIRT  169 (267)
Q Consensus        93 ~~~~i~~~~~~~~~~~~~~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~  169 (267)
                      +...+.++.|++. ++.+++++  .++..++|.+.........+..+ ..+..+.|+|++++++ ++..|+.+++|+++.
T Consensus        83 ~~~~~~~~~~spd-g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~  160 (297)
T 2ojh_A           83 ATICNNDHGISPD-GALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI  160 (297)
T ss_dssp             CCCBCSCCEECTT-SSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             ccccccceEECCC-CCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence            2356778889875 55666766  33456666543222334444433 3488999999999887 778899999999643


Q ss_pred             C-eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCc-cceeeecccccCCccceEEEEEECCCCCeE
Q 024451          170 G-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSAL  246 (267)
Q Consensus       170 ~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  246 (267)
                      . .....+     ......+.+++|+|+++.++.++ .++.+++|++.. ......+    ..|...+.+++|+|+|++|
T Consensus       161 ~~~~~~~~-----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l  231 (297)
T 2ojh_A          161 DSGVETRL-----THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI----TDSAYGDWFPHPSPSGDKV  231 (297)
T ss_dssp             TTCCEEEC-----CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC----CCCSEEEEEEEECTTSSEE
T ss_pred             CCCcceEc-----ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE----ecCCcccCCeEECCCCCEE
Confidence            2 222211     12234689999999999888766 488899998652 2233222    3466789999999999999


Q ss_pred             EEeECC-----------CcEEEEecCc
Q 024451          247 CTGSWD-----------TNLKIWAFGG  262 (267)
Q Consensus       247 ~sgs~d-----------g~i~~w~~~~  262 (267)
                      +.++.+           +.|.+|++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~l~~~d~~~  258 (297)
T 2ojh_A          232 VFVSYDADVFDHPRDLDVRVQLMDMDG  258 (297)
T ss_dssp             EEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred             EEEEcCCCCCcccccCceEEEEEecCC
Confidence            988876           5699998754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=4.9e-22  Score=177.56  Aligned_cols=238  Identities=11%  Similarity=0.048  Sum_probs=165.2

Q ss_pred             ceeeCCCCCeEEEccC-CC-----eEEEeecCCCCCCCCCCcccccccCC--e----------------------eeEEE
Q 024451            2 TCAFSPTGQSVACGGL-DS-----VCSIFNLNSPTDKDGNLPVSRMLSGH--K----------------------GYVSC   51 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~-d~-----~v~~w~~~~~~~~~~~~~~~~~~~~h--~----------------------~~v~~   51 (267)
                      +++|+|||++|++++. |+     +|.+||+....       ..+.+..|  .                      ..|.+
T Consensus        41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ-------TRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC-------EEEEECGGGTC--------------------CCEESCC
T ss_pred             CceEecCCCEEEEEeccCCCCcccEEEEEECCCCc-------eeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence            4789999999999998 88     99999986532       11222222  1                      34788


Q ss_pred             EEEecCCCeeEEEeeCCCeEEEEeCCCC---eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc
Q 024451           52 CQYVPDEDTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS  128 (267)
Q Consensus        52 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~  128 (267)
                      ++|+|++. +|++++. +.|++||+.++   .... +     ..+...+..+.|+|. ++.++.++ ++.|++||+... 
T Consensus       114 ~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~~~~~~-l-----~~~~~~~~~~~~SPD-G~~la~~~-~~~i~~~d~~~g-  182 (741)
T 2ecf_A          114 YQWSPDAQ-RLLFPLG-GELYLYDLKQEGKAAVRQ-L-----THGEGFATDAKLSPK-GGFVSFIR-GRNLWVIDLASG-  182 (741)
T ss_dssp             CEECTTSS-EEEEEET-TEEEEEESSSCSTTSCCB-C-----CCSSSCEEEEEECTT-SSEEEEEE-TTEEEEEETTTT-
T ss_pred             eEECCCCC-EEEEEeC-CcEEEEECCCCCcceEEE-c-----ccCCcccccccCCCC-CCEEEEEe-CCcEEEEecCCC-
Confidence            99999864 6777665 99999999877   3322 1     245667889999975 55666665 568999998643 


Q ss_pred             cceEEeeccccc----------------eeEEEEecCCCEEEEeeCCC--------------------------------
Q 024451          129 RAVRTFHGHEGD----------------VNTVKFFPDGNRFGTGSDDG--------------------------------  160 (267)
Q Consensus       129 ~~~~~~~~~~~~----------------i~~~~~~~~~~~l~~~~~d~--------------------------------  160 (267)
                      ........+...                +..+.|+|+|++|++++.|+                                
T Consensus       183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence            222222222221                47899999999999988765                                


Q ss_pred             -cEEEEeCCC-CeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-----CCeEEEEeCCccceeeecccccCCccce
Q 024451          161 -TCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-----NGDCYVWDTLLAKVVLNLGSLQNSHEGR  233 (267)
Q Consensus       161 -~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~  233 (267)
                       .|.+||+.+ ++.......   ..+...+..++| |+|+.|+.+..     +..|++||..+++...............
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~  338 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLG---KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPL  338 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCC---SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred             eEEEEEECCCCCceEEecCC---CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence             788999987 664332111   123346889999 99999988765     5689999988766543221110011113


Q ss_pred             EEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          234 ITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       234 v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      +..++|+|||+++++++.||.++||.+.
T Consensus       339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          339 HNSLRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             CSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             CCceEECCCCeEEEEecCCCccEEEEEc
Confidence            4578999999999999999998998754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=3.6e-22  Score=167.77  Aligned_cols=206  Identities=13%  Similarity=0.081  Sum_probs=145.1

Q ss_pred             eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe----------eEEEeCCccccCCccceEEEEEeCCCCeEEE----Ee
Q 024451           48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL----------RTSVFGGEFQSGHTADVLSVSISGSNSRMFV----SG  113 (267)
Q Consensus        48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----s~  113 (267)
                      .+..++++++. .++++++.|+ +++|+.....          ............+...+.+++|++. +++++    ++
T Consensus        38 ~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~lav~~~sg  114 (434)
T 2oit_A           38 RSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD-NLTLSACMMSS  114 (434)
T ss_dssp             CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT-SCEEEEEEEET
T ss_pred             CccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC-CCEEEEEEecc
Confidence            45678888865 4788888887 8888753210          0111111111234567999999975 45666    88


Q ss_pred             cCCCeEEEEeCCCc-----c--c---ceEEeeccccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCC
Q 024451          114 SCDSTARLWDTRVA-----S--R---AVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE  182 (267)
Q Consensus       114 ~~d~~i~iwd~~~~-----~--~---~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  182 (267)
                      +.|+.|++||++..     .  +   ....+.+|...|.+++|+|+ +++|++++.|++|++||++++........    
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~----  190 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP----  190 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC----
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC----
Confidence            99999999997532     1  1   13456679999999999997 88999999999999999998754332221    


Q ss_pred             CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccc---ccCCccceEEEEEECCCCCeEEE-eECCCc----
Q 024451          183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS---LQNSHEGRITCLGLSADGSALCT-GSWDTN----  254 (267)
Q Consensus       183 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~l~s-gs~dg~----  254 (267)
                       +...+.+++|+|+|++|++|+.||.|++||.+ .+....+..   ....|...|.+++|++++.++++ .+.||.    
T Consensus       191 -~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~  268 (434)
T 2oit_A          191 -STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETS  268 (434)
T ss_dssp             -GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred             -CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCC
Confidence             23469999999999999999999999999987 332222211   11134558999999999888865 334443    


Q ss_pred             --EEEEecCc
Q 024451          255 --LKIWAFGG  262 (267)
Q Consensus       255 --i~~w~~~~  262 (267)
                        +++|++..
T Consensus       269 ~~v~i~~l~~  278 (434)
T 2oit_A          269 PDVVMALLPK  278 (434)
T ss_dssp             CEEEEEECCC
T ss_pred             CceEEEEecc
Confidence              88998753

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=3.9e-21  Score=155.47  Aligned_cols=235  Identities=12%  Similarity=0.095  Sum_probs=162.3

Q ss_pred             CeEEEccCCCeEEEeecCCCCCCCCCCccccccc-CCee-eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451           10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKG-YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG   87 (267)
Q Consensus        10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~-~h~~-~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   87 (267)
                      +++++++.+++|.+||.....       ....+. ++.. .+..++|+|++..++++++.++.|.+||+.++.....+..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~   74 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMA-------VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE-------EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEcCCCCeEEEEECCCCc-------EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence            478999999999999986421       222222 2322 3677899998766667777889999999998876654432


Q ss_pred             ccccCCccceEEEEEeCCCCeEEEEec------------CCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEE
Q 024451           88 EFQSGHTADVLSVSISGSNSRMFVSGS------------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT  155 (267)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  155 (267)
                      .....+...+..+.+++... .++++.            .++.|.+||+.. .+....+.. ...+.++.|+|+++++++
T Consensus        75 ~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~  151 (337)
T 1pby_B           75 STPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAFEA-PRQITMLAWARDGSKLYG  151 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEEEC-CSSCCCEEECTTSSCEEE
T ss_pred             CCcccccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCC-CcEEEEEeC-CCCcceeEECCCCCEEEE
Confidence            11000122456788886544 445553            579999999864 334444443 456788999999998887


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEEeecCCC----------------------------------------------------
Q 024451          156 GSDDGTCRLFDIRTGHQLQVYYQQHGEN----------------------------------------------------  183 (267)
Q Consensus       156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------------------------------------------------  183 (267)
                      +  ++.|.+||+.+++....+.......                                                    
T Consensus       152 ~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  229 (337)
T 1pby_B          152 L--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             E--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             e--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence            7  6899999998876554332111000                                                    


Q ss_pred             ---------CCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCc
Q 024451          184 ---------EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN  254 (267)
Q Consensus       184 ---------~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~  254 (267)
                               ....+..++|+|++++++++  ++.|++||....+....+.     ....+.+++|+|+|++|++++.|+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~~~  302 (337)
T 1pby_B          230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-----LPHSYYSVNVSTDGSTVWLGGALGD  302 (337)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-----CSSCCCEEEECTTSCEEEEESBSSE
T ss_pred             CceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-----CCCceeeEEECCCCCEEEEEcCCCc
Confidence                     00124468999999999888  7999999998776654432     2235678999999999999999999


Q ss_pred             EEEEecCce
Q 024451          255 LKIWAFGGY  263 (267)
Q Consensus       255 i~~w~~~~~  263 (267)
                      |.+|++...
T Consensus       303 i~v~d~~~~  311 (337)
T 1pby_B          303 LAAYDAETL  311 (337)
T ss_dssp             EEEEETTTC
T ss_pred             EEEEECcCC
Confidence            999998544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=5.3e-22  Score=172.81  Aligned_cols=227  Identities=10%  Similarity=0.042  Sum_probs=157.0

Q ss_pred             ceeeCCCCCeEEEccC-CCeEEEeecCCCCCCCCCCcccccccCCe-eeEEEEEEecCCCeeEEEeeC---CCeEEEEeC
Q 024451            2 TCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSG---DQTCVLWDI   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~-d~~v~~w~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~---d~~v~iwd~   76 (267)
                      +++|+|||+.|++++. ||+++||++...        ..+.+..|. ..+..+.|+|+  +++++++.   +...++|.+
T Consensus        26 ~~~~~~DG~~la~~s~~~g~~~lw~~~~g--------~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           26 SLQGVVDGDKLLVVGFSEGSVNAYLYDGG--------ETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             EEEEEETTTEEEEEEEETTEEEEEEEETT--------EEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred             eeecCCCCCeEEEEEccCCceeEEEEcCC--------CcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEE
Confidence            5789999999999887 999999997431        123334444 68999999986  67777765   555666654


Q ss_pred             CC---CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE
Q 024451           77 TT---GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF  153 (267)
Q Consensus        77 ~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  153 (267)
                      ..   +... .+.    ....  ....++++....++++.+.++.+.+||+... + ...+..+..  .++.|+|+|+.+
T Consensus        96 ~~~~~g~~~-~l~----~~~~--~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~-~~~l~~~~~--~~~~~spDG~~l  164 (582)
T 3o4h_A           96 NTSRPGEEQ-RLE----AVKP--MRILSGVDTGEAVVFTGATEDRVALYALDGG-G-LRELARLPG--FGFVSDIRGDLI  164 (582)
T ss_dssp             ETTSTTCCE-ECT----TSCS--BEEEEEEECSSCEEEEEECSSCEEEEEEETT-E-EEEEEEESS--CEEEEEEETTEE
T ss_pred             eccCCCccc-ccc----CCCC--ceeeeeCCCCCeEEEEecCCCCceEEEccCC-c-EEEeecCCC--ceEEECCCCCEE
Confidence            33   2222 211    1112  2234566555554444444555569998643 2 233333333  889999999999


Q ss_pred             EEeeCC----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC--eEEEEeCCccceeeeccccc
Q 024451          154 GTGSDD----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--DCYVWDTLLAKVVLNLGSLQ  227 (267)
Q Consensus       154 ~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~~  227 (267)
                      ++++.|    ..|.+||+.+++.. .+.     .+...+..++|||||+.|+++..++  .|++||...++.. ..    
T Consensus       165 a~~~~~~~~~~~i~~~d~~~g~~~-~l~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~----  233 (582)
T 3o4h_A          165 AGLGFFGGGRVSLFTSNLSSGGLR-VFD-----SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL----  233 (582)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCCE-EEC-----CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC----
T ss_pred             EEEEEcCCCCeEEEEEcCCCCCce-Eee-----cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec----
Confidence            988877    78999999887653 221     1224578999999999999887888  8999998876654 22    


Q ss_pred             CCccceEEEEE--------ECCCCCeEEEeECCCcEEEEec
Q 024451          228 NSHEGRITCLG--------LSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       228 ~~~~~~v~~~~--------~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ..|...+..++        |+|||.++++++.|+.+++|++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          234 ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            34555555555        9999999999999999999998

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=9.4e-21  Score=154.04  Aligned_cols=244  Identities=13%  Similarity=0.062  Sum_probs=165.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe-eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      .++++++++++++++.+++|.+||.....       ....+..+. ..+..++|+|++...+++...++.|.+||+.++.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~   76 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDT-------VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK   76 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTE-------EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCc-------EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence            35688999999999999999999986421       223333222 2466789999876556677788999999999887


Q ss_pred             eEEEeCCccc-cCCccceEEEEEeCCCCeEEEEecCC------------CeEEEEeCCCcc--cceEEeeccccceeEEE
Q 024451           81 RTSVFGGEFQ-SGHTADVLSVSISGSNSRMFVSGSCD------------STARLWDTRVAS--RAVRTFHGHEGDVNTVK  145 (267)
Q Consensus        81 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~s~~~d------------~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~  145 (267)
                      ....+..... ......+..+.+++. ++.+++++.+            +.|.+||+....  ..+..+. +...+.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~  154 (349)
T 1jmx_B           77 NTFHANLSSVPGEVGRSMYSFAISPD-GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMR  154 (349)
T ss_dssp             EEEEEESCCSTTEEEECSSCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEE
T ss_pred             EEEEEEcccccccccccccceEECCC-CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCccccee
Confidence            6554431100 000223567888865 4555666544            899999986422  1223333 334688999


Q ss_pred             EecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCC------------------------------------------
Q 024451          146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN------------------------------------------  183 (267)
Q Consensus       146 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------------------------------------  183 (267)
                      |+|+++ +++++.  .|.+||+.+++....+.......                                          
T Consensus       155 ~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  231 (349)
T 1jmx_B          155 AADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  231 (349)
T ss_dssp             ECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             ECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence            999999 555443  49999998877654432111000                                          


Q ss_pred             ---------------------CCCcEEEEEEcc-CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          184 ---------------------EIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       184 ---------------------~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                                           ....+..++|+| ++++++++  ++.|++||+.+.+....+.     ....+.+++|+|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~s~  304 (349)
T 1jmx_B          232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-----LDHTYYCVAFDK  304 (349)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-----CSSCCCEEEECS
T ss_pred             ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-----CCCCccceEECC
Confidence                                 001345677889 99999888  8899999998876654432     123467899999


Q ss_pred             CCCeEEEeECCCcEEEEecCceE
Q 024451          242 DGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      +|++|++++.++.|++|+.....
T Consensus       305 dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          305 KGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             SSSCEEEESBSSEEEEEETTTTE
T ss_pred             CCCEEEEecCCCeEEEEeccccc
Confidence            99999888889999999986543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=2.9e-20  Score=150.68  Aligned_cols=240  Identities=14%  Similarity=0.173  Sum_probs=156.0

Q ss_pred             CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC-CeEEEEeCC--CCeeEEEeC
Q 024451           10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-QTCVLWDIT--TGLRTSVFG   86 (267)
Q Consensus        10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-~~v~iwd~~--~~~~~~~~~   86 (267)
                      ..+++++.|+.|++|++...    +....... ..|...+.+++|+|++. +|++++.+ +.|++|++.  ++.......
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~~~~~~~~~~   79 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHE----GALTLTQV-VDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDDGALTFAAE   79 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTT----SCEEEEEE-EECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             EEEEeCCCCCeEEEEEECCC----CcEEEeee-EecCCCCceEEECCCCC-EEEEeecCCCeEEEEEecCCCCceeeccc
Confidence            34555588999999998531    11112222 34666788899999764 56666665 999999997  444222111


Q ss_pred             CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc--ccceEEeeccccceeEEEEecCCCEEEEee-CCCcEE
Q 024451           87 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCR  163 (267)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~  163 (267)
                        . ..+ ..+..+++++....+++++..++.|.+||+...  ......+.. ...+.+++|+|+++++++++ .|+.|.
T Consensus        80 --~-~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~  154 (343)
T 1ri6_A           80 --S-ALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRIC  154 (343)
T ss_dssp             --E-ECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred             --c-ccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEE
Confidence              0 112 267788898765555566666899999998411  122333333 34588999999999888777 899999


Q ss_pred             EEeCCC-CeeeEEEE-eecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCc--cce--eeecccccCCc--cceE
Q 024451          164 LFDIRT-GHQLQVYY-QQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLL--AKV--VLNLGSLQNSH--EGRI  234 (267)
Q Consensus       164 iwd~~~-~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~--~~~--~~~~~~~~~~~--~~~v  234 (267)
                      +||+.+ ++...... ... ......+..++|+|++++++++. .++.+.+||+..  ++.  ..........+  ...+
T Consensus       155 ~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  233 (343)
T 1ri6_A          155 LFTVSDDGHLVAQDPAEVT-TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA  233 (343)
T ss_dssp             EEEECTTSCEEEEEEEEEE-CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCE
T ss_pred             EEEecCCCceeeecccccc-cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCc
Confidence            999987 54322110 111 11123578899999999776655 789999999853  221  11111111111  2356


Q ss_pred             EEEEECCCCCeEE-EeECCCcEEEEecC
Q 024451          235 TCLGLSADGSALC-TGSWDTNLKIWAFG  261 (267)
Q Consensus       235 ~~~~~~p~~~~l~-sgs~dg~i~~w~~~  261 (267)
                      ..++|+|+|++|+ ++..|+.|.+|++.
T Consensus       234 ~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          234 ADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            7899999999887 45579999999986

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=5.3e-20  Score=148.80  Aligned_cols=237  Identities=14%  Similarity=0.094  Sum_probs=155.8

Q ss_pred             eeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-
Q 024451            4 AFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-   81 (267)
Q Consensus         4 ~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-   81 (267)
                      .|.+++ ..+++.+.+++|++||.....       ....+..+...+ +++|+|++..+++++..++.|.+||..++.. 
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~-------~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~   75 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLE-------ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK   75 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCC-------EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccc-------eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence            466555 558888899999999986422       333334445556 8999998764455555589999999988764 


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-C--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE-Eee
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-S--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGS  157 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~  157 (267)
                      ...+.     .+......+++++.. ++++++..+ +  .|.+||+... +....+.. .....+++|+|+|++++ +..
T Consensus        76 ~~~~~-----~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~-~~~~~~~~-~~~~~~~~~spdg~~l~~~~~  147 (331)
T 3u4y_A           76 VVAIQ-----EGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKN-KFISTIPI-PYDAVGIAISPNGNGLILIDR  147 (331)
T ss_dssp             EEEEE-----ECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTT-EEEEEEEC-CTTEEEEEECTTSSCEEEEEE
T ss_pred             EEecc-----cCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCC-CeEEEEEC-CCCccceEECCCCCEEEEEec
Confidence            33331     233333337888654 455555554 3  8999998743 34444443 34568999999998555 445


Q ss_pred             CCCc-EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccce---eeecccccCCccc
Q 024451          158 DDGT-CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKV---VLNLGSLQNSHEG  232 (267)
Q Consensus       158 ~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~~  232 (267)
                      .++. +.+|++.....+....... ......+..++|+|++++++++. .++.|++||+..++.   +..+.     ...
T Consensus       148 ~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-----~~~  221 (331)
T 3u4y_A          148 SSANTVRRFKIDADGVLFDTGQEF-ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-----TNN  221 (331)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEE-ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-----CSS
T ss_pred             CCCceEEEEEECCCCcEeecCCcc-ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-----CCC
Confidence            6688 9999987644332111110 01123478999999999765554 689999999987776   43321     234


Q ss_pred             eEEEEEECCCCCeEEEeE-CCCcEEEEecCc
Q 024451          233 RITCLGLSADGSALCTGS-WDTNLKIWAFGG  262 (267)
Q Consensus       233 ~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~~  262 (267)
                      .+..++|+|+|++|+.++ .++.|.+|+...
T Consensus       222 ~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          222 LPGTIVVSRDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             CCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred             CCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence            567899999999776544 578899999754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=1.8e-21  Score=173.33  Aligned_cols=240  Identities=11%  Similarity=0.051  Sum_probs=159.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCee---eEEEEEEecCCCeeEEEeeCC---------C
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG---YVSCCQYVPDEDTHLITSSGD---------Q   69 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~d---------~   69 (267)
                      +++|+|||+++++ +.||+|++||+....       ....+.+|..   .|.+++|+|++ ++|++++.+         +
T Consensus        21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~-------~~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~   91 (723)
T 1xfd_A           21 EAKWISDTEFIYR-EQKGTVRLWNVETNT-------STVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTG   91 (723)
T ss_dssp             CCCBSSSSCBCCC-CSSSCEEEBCGGGCC-------CEEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCS
T ss_pred             ccEEcCCCcEEEE-eCCCCEEEEECCCCc-------EEEEeccccccccccceEEECCCC-CEEEEEecCccceeeccee
Confidence            5789999997776 789999999986532       2334445554   48899999986 467777664         7


Q ss_pred             eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccc---------
Q 024451           70 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD---------  140 (267)
Q Consensus        70 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------  140 (267)
                      .+.+||+.++.... +.  ...+|...+..++|+|. ++.++.++. +.|++||+... ........+...         
T Consensus        92 ~i~~~d~~~~~~~~-l~--~~~~~~~~~~~~~~SPd-G~~la~~~~-~~i~~~~~~~g-~~~~~~~~~~~~~~~~g~~~~  165 (723)
T 1xfd_A           92 YYVLSKIPHGDPQS-LD--PPEVSNAKLQYAGWGPK-GQQLIFIFE-NNIYYCAHVGK-QAIRVVSTGKEGVIYNGLSDW  165 (723)
T ss_dssp             EEEEEESSSCCCEE-CC--CTTCCSCCCSBCCBCSS-TTCEEEEET-TEEEEESSSSS-CCEEEECCCBTTTEEEEECCH
T ss_pred             eEEEEECCCCceEe-cc--CCccccccccccEECCC-CCEEEEEEC-CeEEEEECCCC-ceEEEecCCCCCceECcccce
Confidence            88899999876422 21  11245555778889875 455666654 79999998743 233333333322         


Q ss_pred             ---------eeEEEEecCCCEEEEeeCCC----------------------------------cEEEEeCCCCeeeEEEE
Q 024451          141 ---------VNTVKFFPDGNRFGTGSDDG----------------------------------TCRLFDIRTGHQLQVYY  177 (267)
Q Consensus       141 ---------i~~~~~~~~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~~~~~~  177 (267)
                               +.++.|+|+|+.|+.++.|+                                  .|++||+.+++....+.
T Consensus       166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~  245 (723)
T 1xfd_A          166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM  245 (723)
T ss_dssp             HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred             eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence                     27899999999999887553                                  79999998776433221


Q ss_pred             eec-CCCCCCcEEEEEEccCCCEEEEEEeC----CeEEEEeCCccceeeecccccCCccceE----EEEEECCCCCeEEE
Q 024451          178 QQH-GENEIPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLLAKVVLNLGSLQNSHEGRI----TCLGLSADGSALCT  248 (267)
Q Consensus       178 ~~~-~~~~~~~v~~~~~s~~~~~l~~g~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~v----~~~~~~p~~~~l~s  248 (267)
                      ... .......+..++|+|+|+++++....    ..|++||+.+++......   ..+.+.+    ..++|+|||+.|+.
T Consensus       246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~~~spdg~~l~~  322 (723)
T 1xfd_A          246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE---DESEAWLHRQNEEPVFSKDGRKFFF  322 (723)
T ss_dssp             CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE---EECSSCCCCCCCCCEECTTSCSEEE
T ss_pred             CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE---eccCCEEeccCCCceEcCCCCeEEE
Confidence            110 00113468899999999988777543    589999987766443221   1122333    26899999998775


Q ss_pred             --eECCC----c--EEEEe
Q 024451          249 --GSWDT----N--LKIWA  259 (267)
Q Consensus       249 --gs~dg----~--i~~w~  259 (267)
                        +..|+    .  |.+|+
T Consensus       323 ~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          323 IRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             EEEECCSSSSCEEEEEEEC
T ss_pred             EEecccCCCcceeEEEEEe
Confidence              45677    4  55555

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=6.5e-19  Score=143.44  Aligned_cols=225  Identities=14%  Similarity=0.055  Sum_probs=156.9

Q ss_pred             ceeeCCCCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe---------eeEEEEEEecCCCeeEEEe-eCCCe
Q 024451            2 TCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK---------GYVSCCQYVPDEDTHLITS-SGDQT   70 (267)
Q Consensus         2 ~~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~l~s~-~~d~~   70 (267)
                      .++|+|+|+ .+++...++.|.+||.....       ....+..+.         ..+.++.|+|++...+++. +.++.
T Consensus        93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  165 (353)
T 3vgz_A           93 GATINNTTQTLWFGNTVNSAVTAIDAKTGE-------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESV  165 (353)
T ss_dssp             SEEEETTTTEEEEEETTTTEEEEEETTTCC-------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCE
T ss_pred             eEEECCCCCEEEEEecCCCEEEEEeCCCCe-------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCce
Confidence            468999998 55666678999999986422       222222222         1367899999876544444 35889


Q ss_pred             EEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec----cccceeEEEE
Q 024451           71 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----HEGDVNTVKF  146 (267)
Q Consensus        71 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~i~~~~~  146 (267)
                      |.+||..++.....+.     .+...+..+.+++.+ +.+++++.++.|.+||.... +....+..    +...+..++|
T Consensus       166 i~~~d~~~~~~~~~~~-----~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~  238 (353)
T 3vgz_A          166 IWVVDGGNIKLKTAIQ-----NTGKMSTGLALDSEG-KRLYTTNADGELITIDTADN-KILSRKKLLDDGKEHFFINISL  238 (353)
T ss_dssp             EEEEETTTTEEEEEEC-----CCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEE
T ss_pred             EEEEcCCCCceEEEec-----CCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEE
Confidence            9999999887766553     123345677788654 45666677999999998753 33433332    4455778999


Q ss_pred             ecCCCEEEEee-CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecc
Q 024451          147 FPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLG  224 (267)
Q Consensus       147 ~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~  224 (267)
                      +|++++++.++ .++.|.+||+.+++....+...       ....++|+|+++.++++. .++.|.+||..+.+.+..+.
T Consensus       239 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~  311 (353)
T 3vgz_A          239 DTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP-------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD  311 (353)
T ss_dssp             ETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS-------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC-------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            99999776665 4599999999988766544321       124688999999766665 68999999998877665432


Q ss_pred             cccCCccceEEEEEECCCCCeEEEeECC
Q 024451          225 SLQNSHEGRITCLGLSADGSALCTGSWD  252 (267)
Q Consensus       225 ~~~~~~~~~v~~~~~~p~~~~l~sgs~d  252 (267)
                           ......+++|+|+|++|+.+..+
T Consensus       312 -----~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          312 -----TPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             -----CCSEEEEEEECTTSCEEEEEEEC
T ss_pred             -----cCCCCCeEEEcCCCCEEEEEEcc
Confidence                 23467899999999977766555

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=5.2e-20  Score=170.27  Aligned_cols=236  Identities=14%  Similarity=0.094  Sum_probs=171.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCC--C-CCcccccccCCeeeEEEEEEe-cCCCeeEEEeeCCCeEEEEeCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD--G-NLPVSRMLSGHKGYVSCCQYV-PDEDTHLITSSGDQTCVLWDIT   77 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~--~-~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~d~~v~iwd~~   77 (267)
                      ..+|+|+|+.|+.+ .++.|.+|++.......  . ..........|...+.+++|+ |++ ..|++++ ++.|.+|+..
T Consensus       249 ~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~  325 (1045)
T 1k32_A          249 PRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVS  325 (1045)
T ss_dssp             EEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTT
T ss_pred             eeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCC
Confidence            35799999999887 58999999973211000  0 000000111255578899999 976 4677666 8899999998


Q ss_pred             CCeeEEEeCCccccCCcc-ceEEEEEeCCCCeEEEEecCCCeEE-EEeCCCcccceEEeeccccceeEEEEecCCCEEEE
Q 024451           78 TGLRTSVFGGEFQSGHTA-DVLSVSISGSNSRMFVSGSCDSTAR-LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT  155 (267)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~s~~~d~~i~-iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  155 (267)
                      ++.....      ..|.. .+..+.|+  +++.++.++.+..+. +|+....  ....+.+|...+..++|+|+|+++++
T Consensus       326 ~~~~~~~------~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~--~~~~l~~~~~~~~~~~~SpDG~~la~  395 (1045)
T 1k32_A          326 GTYVLKV------PEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTG--KAEKFEENLGNVFAMGVDRNGKFAVV  395 (1045)
T ss_dssp             SSBEEEC------SCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTC--CEEECCCCCCSEEEEEECTTSSEEEE
T ss_pred             CCceEEc------cCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCC--CceEecCCccceeeeEECCCCCEEEE
Confidence            7654332      23455 77888887  556677777777888 8897642  23444477788999999999999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC----------eEEEEeCCccceeeeccc
Q 024451          156 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----------DCYVWDTLLAKVVLNLGS  225 (267)
Q Consensus       156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg----------~i~i~d~~~~~~~~~~~~  225 (267)
                      ++.++.|++||+.+++.......     +...+..++|+|+|++|++++.++          .|++||+..++ ...+  
T Consensus       396 ~~~~~~v~~~d~~tg~~~~~~~~-----~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l--  467 (1045)
T 1k32_A          396 ANDRFEIMTVDLETGKPTVIERS-----REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA--  467 (1045)
T ss_dssp             EETTSEEEEEETTTCCEEEEEEC-----SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC--
T ss_pred             ECCCCeEEEEECCCCceEEeccC-----CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe--
Confidence            99999999999998876544322     223568899999999998887754          99999988765 3222  


Q ss_pred             ccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          226 LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       226 ~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                        ..|...+..++|+|||++|+.++.++..++|+.
T Consensus       468 --~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          468 --TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             --SCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             --eCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence              346677889999999999999999888888864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.86  E-value=7.4e-20  Score=163.46  Aligned_cols=237  Identities=11%  Similarity=0.109  Sum_probs=162.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|||++|++++. ++|.+||+.....     +....+..|...+.+++|+|++. +|+.++ ++.|++||+.++..
T Consensus       113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~-----~~~~~l~~~~~~~~~~~~SPDG~-~la~~~-~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGK-----AAVRQLTHGEGFATDAKLSPKGG-FVSFIR-GRNLWVIDLASGRQ  184 (741)
T ss_dssp             CCEECTTSSEEEEEET-TEEEEEESSSCST-----TSCCBCCCSSSCEEEEEECTTSS-EEEEEE-TTEEEEEETTTTEE
T ss_pred             eeEECCCCCEEEEEeC-CcEEEEECCCCCc-----ceEEEcccCCcccccccCCCCCC-EEEEEe-CCcEEEEecCCCCE
Confidence            4689999999999886 8999999865310     02234567778899999999864 677766 56999999998765


Q ss_pred             EEEeCCccccCCcc----------------ceEEEEEeCCCCeEEEEecCCC----------------------------
Q 024451           82 TSVFGGEFQSGHTA----------------DVLSVSISGSNSRMFVSGSCDS----------------------------  117 (267)
Q Consensus        82 ~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~~~~s~~~d~----------------------------  117 (267)
                      .....     .+..                .+..+.|+|. ++.+++++.|+                            
T Consensus       185 ~~~~~-----~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  258 (741)
T 2ecf_A          185 MQLTA-----DGSTTIGNGIAEFVADEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD  258 (741)
T ss_dssp             EECCC-----CCCSSEEESCCCHHHHHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS
T ss_pred             EEecc-----CCccceeccccceeeeeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC
Confidence            44322     1111                1366889875 45566665554                            


Q ss_pred             -----eEEEEeCCC-cccceEEee--ccccceeEEEEecCCCEEEEeeC-----CCcEEEEeCCCCeeeEEEEeecCCCC
Q 024451          118 -----TARLWDTRV-ASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSD-----DGTCRLFDIRTGHQLQVYYQQHGENE  184 (267)
Q Consensus       118 -----~i~iwd~~~-~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~  184 (267)
                           .|.+||+.. .. ......  .|...+..++| |+|+.|+.++.     +..|.+||+.+++....+.... ...
T Consensus       259 ~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~  335 (741)
T 2ecf_A          259 ANVQVKLGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS-PTW  335 (741)
T ss_dssp             CCCEEEEEEECSSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC-SSC
T ss_pred             CCCeeEEEEEECCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC-CCc
Confidence                 788889864 33 222222  46678999999 99999987653     5689999999887655443322 111


Q ss_pred             CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc-cceeeecccccCCccceEEEE-EECCCCCeEE-EeECCC--cEEEEe
Q 024451          185 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCL-GLSADGSALC-TGSWDT--NLKIWA  259 (267)
Q Consensus       185 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~l~-sgs~dg--~i~~w~  259 (267)
                      ...+..++|+|+|++++++..+|..+||.... .+ ...+    ..|...+..+ .|+|+|+.|+ +++.|+  .++||+
T Consensus       336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l----~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          336 VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL----THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES----CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee----eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence            11245788999999888888888777776542 22 3222    3456677777 5999999775 455555  899997


Q ss_pred             c
Q 024451          260 F  260 (267)
Q Consensus       260 ~  260 (267)
                      +
T Consensus       411 ~  411 (741)
T 2ecf_A          411 V  411 (741)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=3e-19  Score=158.74  Aligned_cols=243  Identities=16%  Similarity=0.157  Sum_probs=160.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCee--------------eEEEEEEecCCCeeEEEee-
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG--------------YVSCCQYVPDEDTHLITSS-   66 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~--------------~v~~~~~~~~~~~~l~s~~-   66 (267)
                      .++|+|||+.|+++ .|+.|.+|++....+..+.  ..+....+..              .+.++.|+|++. +|++++ 
T Consensus       125 ~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~--~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~  200 (706)
T 2z3z_A          125 SLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR--AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRM  200 (706)
T ss_dssp             TCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC--CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEE
T ss_pred             CCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC--cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEE
Confidence            47899999999995 7899999998751000000  1121222222              257899999864 677776 


Q ss_pred             --------------------------------CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEec
Q 024451           67 --------------------------------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS  114 (267)
Q Consensus        67 --------------------------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~  114 (267)
                                                      .+..|++||+.++.......   ...|...+..+.|+|. ++.+++++
T Consensus       201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~spd-g~~l~~~~  276 (706)
T 2z3z_A          201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSPD-ENILYVAE  276 (706)
T ss_dssp             ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC---CSCTTCEEEEEEECTT-SSEEEEEE
T ss_pred             CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc---CCCCceeEeeEEEECC-CCEEEEEE
Confidence                                            45679999999886544321   1246677889999975 55566665


Q ss_pred             CCC-----eEEEEeCCCcccceEEee-cccc---ceeEEEEec--CCCEEEEeeCCCcEEEEeCC-CCeeeEEEEeecCC
Q 024451          115 CDS-----TARLWDTRVASRAVRTFH-GHEG---DVNTVKFFP--DGNRFGTGSDDGTCRLFDIR-TGHQLQVYYQQHGE  182 (267)
Q Consensus       115 ~d~-----~i~iwd~~~~~~~~~~~~-~~~~---~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~  182 (267)
                      .++     .|++||+........... .+..   .+..+.|+|  +|++++++..|+.+++|+++ +++....+.     
T Consensus       277 ~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~-----  351 (706)
T 2z3z_A          277 VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT-----  351 (706)
T ss_dssp             ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC-----
T ss_pred             eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC-----
Confidence            554     899999875422222221 1222   246789999  99999999999999999886 444333221     


Q ss_pred             CCCCcEEE-EEEccCCCEEEEEEeC-C----eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC----
Q 024451          183 NEIPHVTS-IAFSISGRLLFAGYSN-G----DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD----  252 (267)
Q Consensus       183 ~~~~~v~~-~~~s~~~~~l~~g~~d-g----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d----  252 (267)
                      .....+.. ++|+|+++.|+.++.+ +    .|+.||...++. ..+     .|...+.+++|+|||++|+..+.+    
T Consensus       352 ~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l-----~~~~~~~~~~~spdg~~l~~~~~~~~~p  425 (706)
T 2z3z_A          352 KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDL-----TPESGMHRTQLSPDGSAIIDIFQSPTVP  425 (706)
T ss_dssp             CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EES-----CCSSSEEEEEECTTSSEEEEEEECSSCS
T ss_pred             CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eec-----cCCCceEEEEECCCCCEEEEEecCCCCC
Confidence            12234655 7999999988666544 4    677777665442 122     255678899999999998876443    


Q ss_pred             CcEEEEecCce
Q 024451          253 TNLKIWAFGGY  263 (267)
Q Consensus       253 g~i~~w~~~~~  263 (267)
                      +.+.+|++.+-
T Consensus       426 ~~i~l~d~~~~  436 (706)
T 2z3z_A          426 RKVTVTNIGKG  436 (706)
T ss_dssp             CEEEEEESSSC
T ss_pred             cEEEEEECCCC
Confidence            46999987553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=6.7e-20  Score=162.92  Aligned_cols=241  Identities=10%  Similarity=0.066  Sum_probs=156.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC---
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---   78 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~---   78 (267)
                      +++|+|+ +.++.+ .|+++.+||+....        ...+..+...+.+++|+|++. .|++ +.|+.|++||+.+   
T Consensus        86 ~~~~spd-~~~~~~-~~~~i~~~d~~~~~--------~~~l~~~~~~~~~~~~SpdG~-~la~-~~~~~i~v~~~~~~~~  153 (706)
T 2z3z_A           86 RTLDAGR-GLVVLF-TQGGLVGFDMLARK--------VTYLFDTNEETASLDFSPVGD-RVAY-VRNHNLYIARGGKLGE  153 (706)
T ss_dssp             EEEETTT-TEEEEE-ETTEEEEEETTTTE--------EEEEECCTTCCTTCEECTTSS-EEEE-EETTEEEEEECBCTTS
T ss_pred             eEEECCC-CeEEEE-ECCEEEEEECCCCc--------eEEccCCcccccCCcCCCCCC-EEEE-EECCeEEEEecCcccc
Confidence            4689999 544444 45999999986421        122344566688899999875 5666 4689999999988   


Q ss_pred             --CeeEEEeCCccc---------cCCccceEEEEEeCCCCeEEEEec---------------------------------
Q 024451           79 --GLRTSVFGGEFQ---------SGHTADVLSVSISGSNSRMFVSGS---------------------------------  114 (267)
Q Consensus        79 --~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~~~s~~---------------------------------  114 (267)
                        +...........         ..+...+.++.|+|. ++.+++++                                 
T Consensus       154 ~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~  232 (706)
T 2z3z_A          154 GMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS  232 (706)
T ss_dssp             CCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred             cCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence              654433211100         000012467889875 55666665                                 


Q ss_pred             CCCeEEEEeCCCcccceEEe--eccccceeEEEEecCCCEEEEeeCCC-----cEEEEeCCCCeeeEEEEeecCCCCCCc
Q 024451          115 CDSTARLWDTRVASRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQLQVYYQQHGENEIPH  187 (267)
Q Consensus       115 ~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~  187 (267)
                      .+..|++||+.... .....  ..|...+..++|+|+|+.+++++.|+     .|.+||+.+++....+...........
T Consensus       233 ~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~  311 (706)
T 2z3z_A          233 HHVTVGIYHLATGK-TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP  311 (706)
T ss_dssp             CEEEEEEEETTTTE-EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred             CeeEEEEEECCCCc-eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence            44679999987433 22222  24566789999999999999888776     899999998843333332222111112


Q ss_pred             EEEEEEcc--CCCEEEEEEeCCeEEEEeCC-ccceeeecccccCCccceEEE-EEECCCCCeEEEeECC-C----cEEEE
Q 024451          188 VTSIAFSI--SGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITC-LGLSADGSALCTGSWD-T----NLKIW  258 (267)
Q Consensus       188 v~~~~~s~--~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~sgs~d-g----~i~~w  258 (267)
                      +..++|+|  +|++++++..+|.+++|+.. ..+....+    ..|...+.. ++|+|+|+.|+.++.+ +    .|..|
T Consensus       312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l----~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  387 (706)
T 2z3z_A          312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV----TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI  387 (706)
T ss_dssp             CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC----CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred             cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec----CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence            35678999  99999999889988888764 33333322    345566766 7999999988765554 4    44444


Q ss_pred             ec
Q 024451          259 AF  260 (267)
Q Consensus       259 ~~  260 (267)
                      ++
T Consensus       388 d~  389 (706)
T 2z3z_A          388 DI  389 (706)
T ss_dssp             ET
T ss_pred             Ec
Confidence            54

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=2e-19  Score=160.26  Aligned_cols=246  Identities=11%  Similarity=0.031  Sum_probs=157.3

Q ss_pred             ceeeCCCCCeEEEccCC---------CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEE
Q 024451            2 TCAFSPTGQSVACGGLD---------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV   72 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d---------~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~   72 (267)
                      +++|+|||++|++++.+         +.+.+||+....     ........+|...+.+++|+|++. .|+.++. +.|+
T Consensus        65 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~  137 (723)
T 1xfd_A           65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD-----PQSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIY  137 (723)
T ss_dssp             EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC-----CEECCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEE
T ss_pred             eEEECCCCCEEEEEecCccceeecceeeEEEEECCCCc-----eEeccCCccccccccccEECCCCC-EEEEEEC-CeEE
Confidence            47899999999998764         788899987532     111222345666688899999875 6777765 7999


Q ss_pred             EEeCCCCeeEEEeCCccc----cCCc---------cceEEEEEeCCCCeEEEEecCCC----------------------
Q 024451           73 LWDITTGLRTSVFGGEFQ----SGHT---------ADVLSVSISGSNSRMFVSGSCDS----------------------  117 (267)
Q Consensus        73 iwd~~~~~~~~~~~~~~~----~~~~---------~~i~~~~~~~~~~~~~~s~~~d~----------------------  117 (267)
                      +||+.++...........    .++.         ..+.++.|+|. ++.+++++.|+                      
T Consensus       138 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (723)
T 1xfd_A          138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPY  216 (723)
T ss_dssp             EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEE
T ss_pred             EEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceec
Confidence            999988765544321100    0000         12367889975 55666665432                      


Q ss_pred             ------------eEEEEeCCCcccceEEeecc------ccceeEEEEecCCCEEEEeeC----CCcEEEEeCCCCeeeEE
Q 024451          118 ------------TARLWDTRVASRAVRTFHGH------EGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGHQLQV  175 (267)
Q Consensus       118 ------------~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~  175 (267)
                                  .|++||+.... ....+..+      ...+..++|+|+|+++++...    +..|.+||+.+++....
T Consensus       217 ~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~  295 (723)
T 1xfd_A          217 HYPKAGSENPSISLHVIGLNGPT-HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK  295 (723)
T ss_dssp             ECCBTTSCCCEEEEEEEESSSSC-CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred             cCCCCCCCCCeeEEEEEECCCCc-eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence                        79999986433 23444433      567889999999998876643    35799999998876554


Q ss_pred             EEeecCCCCCCc-EEEEEEccCCCEEEE--EEeCC------eEEEEeC-Cccce--eeecccccCCccceEE-EEEECCC
Q 024451          176 YYQQHGENEIPH-VTSIAFSISGRLLFA--GYSNG------DCYVWDT-LLAKV--VLNLGSLQNSHEGRIT-CLGLSAD  242 (267)
Q Consensus       176 ~~~~~~~~~~~~-v~~~~~s~~~~~l~~--g~~dg------~i~i~d~-~~~~~--~~~~~~~~~~~~~~v~-~~~~~p~  242 (267)
                      ....+. ..... ...++|+|+|+.|+.  +..++      .|++||. ...+.  ...+    ..+...+. .++|+|+
T Consensus       296 ~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l----~~~~~~~~~~~~~spd  370 (723)
T 1xfd_A          296 HEDESE-AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI----TSGDWDVTKILAYDEK  370 (723)
T ss_dssp             EEEECS-SCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS----CCSSSCEEEEEEEETT
T ss_pred             EEeccC-CEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe----ecCCeEEEeeeEEcCC
Confidence            432221 10000 136789999997765  34566      5777873 33320  2211    12223344 4799999


Q ss_pred             CCeEEEeECC---CcEEEEecC
Q 024451          243 GSALCTGSWD---TNLKIWAFG  261 (267)
Q Consensus       243 ~~~l~sgs~d---g~i~~w~~~  261 (267)
                      |+.|+..+.+   +.++||++.
T Consensus       371 g~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          371 GNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             TTEEEEEESSSCTTCCEEEEEC
T ss_pred             CCEEEEEEcCCCCcceEEEEEe
Confidence            9999876665   789999863

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=1.6e-19  Score=148.34  Aligned_cols=252  Identities=10%  Similarity=0.071  Sum_probs=155.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCe-eEEEee-------------C
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT-HLITSS-------------G   67 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~-------------~   67 (267)
                      .++|+|+|++|++++.+ .+.+|++...    +..........+ +...+++|+|++.. +++++.             .
T Consensus        44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~----g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           44 WMTFDHERKNIYGAAMK-KWSSFAVKSP----TEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             EEEECTTSSEEEEEEBT-EEEEEEEEET----TEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             EEEECCCCCEEEEEccc-eEEEEEECCC----CCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            46899999999998888 9999998521    111111111111 12344788887643 355553             6


Q ss_pred             CCeEEEEeCCC-CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC-Cccc-ceEEee--cccccee
Q 024451           68 DQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR-VASR-AVRTFH--GHEGDVN  142 (267)
Q Consensus        68 d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~-~~~~-~~~~~~--~~~~~i~  142 (267)
                      ++++.+|++.. +.....+.. ....+...+..+.++|....++++...++.|++|++. .... .+..+.  .|...+.
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQN-YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEE-EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CceEEEEccCCCCcCcceEee-EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            89999999973 433222210 0012345678899997654444444456799999986 3221 122232  2355688


Q ss_pred             EEEEecCCCEEEEeeC-CCcEEEEeCC--CCeeeE---EEEeecC--CCCCC------cEEEEE-EccCCCEEEEEEeCC
Q 024451          143 TVKFFPDGNRFGTGSD-DGTCRLFDIR--TGHQLQ---VYYQQHG--ENEIP------HVTSIA-FSISGRLLFAGYSNG  207 (267)
Q Consensus       143 ~~~~~~~~~~l~~~~~-d~~i~iwd~~--~~~~~~---~~~~~~~--~~~~~------~v~~~~-~s~~~~~l~~g~~dg  207 (267)
                      .++|+|+|+++++++. ++.|.+|+++  +++...   .+.....  ..+..      .+..++ |+|+|++|+++..+.
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            9999999999887774 7899999875  444321   1111100  00011      478899 999999988776533


Q ss_pred             ------eEEEEeCC-ccceeeecccccCCccceEEEEEECC---CCCeEEEeECC-CcEEEEecC
Q 024451          208 ------DCYVWDTL-LAKVVLNLGSLQNSHEGRITCLGLSA---DGSALCTGSWD-TNLKIWAFG  261 (267)
Q Consensus       208 ------~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~sgs~d-g~i~~w~~~  261 (267)
                            .|.+|++. .++... .......+......++|+|   +|++|++++.+ +.|++|++.
T Consensus       277 ~~~~~~~i~v~~~~~~g~~~~-~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          277 KFELQGYIAGFKLRDCGSIEK-QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEE-EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             CCCCCCeEEEEEECCCCCEEE-eeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence                  89999975 333221 1000011233345688999   89999998874 899999874

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=3.3e-17  Score=129.85  Aligned_cols=245  Identities=15%  Similarity=0.171  Sum_probs=164.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC-CCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~   80 (267)
                      .++++++|+++++...++.|.+||.....  ....+......+|...+..+++.+.++.++++... ++.|++||. ++.
T Consensus        34 ~v~~~~~g~l~v~~~~~~~i~~~d~~g~~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~  110 (286)
T 1q7f_A           34 GVAVNAQNDIIVADTNNHRIQIFDKEGRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQ  110 (286)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTTSCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSC
T ss_pred             eEEECCCCCEEEEECCCCEEEEECCCCcE--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCc
Confidence            46789999999998889999999865311  00000000112455678888985434455555433 889999994 454


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee--ccccceeEEEEecCCCEEEEeeC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSD  158 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~  158 (267)
                      ....+.    ..+...+..+++++ +++++++...++.|.+||..  ......+.  ++...+..++++|+++++++...
T Consensus       111 ~~~~~~----~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          111 FVRKFG----ATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             EEEEEC----TTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             EEEEec----CccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC--CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            444442    12334577888886 45688888888999999964  23333342  34456889999999998888888


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC-eEEEEeCCccceeeecccccCCccceEEEE
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQNSHEGRITCL  237 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  237 (267)
                      ++.|++||.. ++.+..+..   ......+..++++++|+++++...++ .|.+||.. ++.+..+..  ........++
T Consensus       184 ~~~i~~~~~~-g~~~~~~~~---~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~--~~~~~~~~~i  256 (286)
T 1q7f_A          184 AHCVKVFNYE-GQYLRQIGG---EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALES--KVKHAQCFDV  256 (286)
T ss_dssp             GTEEEEEETT-CCEEEEESC---TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEE--SSCCSCEEEE
T ss_pred             CCEEEEEcCC-CCEEEEEcc---CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcc--cCCCCcceeE
Confidence            9999999975 343333211   11124578999999999888887775 99999954 333333311  1122346789


Q ss_pred             EECCCCCeEEEeECCCcEEEEecCceE
Q 024451          238 GLSADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       238 ~~~p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      +++|+|+++++ +.|+.|++|++....
T Consensus       257 ~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          257 ALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             EECCCCcEEEE-CCCCeEEEEEccccc
Confidence            99999987777 679999999986543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=1.3e-19  Score=161.38  Aligned_cols=239  Identities=11%  Similarity=0.043  Sum_probs=151.1

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCee---eEEEEEEecCCCeeEEEeeC---------CC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG---YVSCCQYVPDEDTHLITSSG---------DQ   69 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~---------d~   69 (267)
                      ..+|+|+|++++++ .|++|++||+....       ....+.+|..   .+.+++|+|++. +|++++.         |+
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~s~~~   90 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQ-------SYTILSNRTMKSVNASNYGLSPDRQ-FVYLESDYSKLWRYSYTA   90 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCC-------EEEEECHHHHHTTTCSEEEECTTSS-EEEEEEEEEECSSSCEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCc-------EEEEEccccccccceeeEEECCCCC-eEEEEecCceeEEeecce
Confidence            46899999766654 69999999986532       2333344433   388999999864 6777665         78


Q ss_pred             eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe-eccccce-------
Q 024451           70 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDV-------  141 (267)
Q Consensus        70 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i-------  141 (267)
                      .|++||+.++.......      -...+..++|+|.+ +.++.+. ++.|++|++.... ..... .++...+       
T Consensus        91 ~i~~~d~~~g~~~~~~~------l~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~-~~~l~~~~~~~~v~~g~~~~  161 (719)
T 1z68_A           91 TYYIYDLSNGEFVRGNE------LPRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDP-PFQITFNGRENKIFNGIPDW  161 (719)
T ss_dssp             EEEEEETTTTEECCSSC------CCSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSC-CEECCCCCBTTTEEESSCCH
T ss_pred             EEEEEECCCCcccccee------cCcccccceECCCC-CEEEEEE-CCeEEEEeCCCCC-cEEEecCCCcCCeEcccccc
Confidence            99999999886411010      11346778899754 5556554 7899999986433 22211 2222212       


Q ss_pred             ----------eEEEEecCCCEEEEeeCCC----------------------------------cEEEEeCCCCeee--EE
Q 024451          142 ----------NTVKFFPDGNRFGTGSDDG----------------------------------TCRLFDIRTGHQL--QV  175 (267)
Q Consensus       142 ----------~~~~~~~~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~~--~~  175 (267)
                                .++.|+|||++|+.++.|.                                  .|++||+.+++..  ..
T Consensus       162 v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~  241 (719)
T 1z68_A          162 VYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE  241 (719)
T ss_dssp             HHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE
T ss_pred             eeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE
Confidence                      4899999999999988652                                  7889999876532  11


Q ss_pred             EEe-ecCCCCCCcEEEEEEccCCCEEEEEEeCC----eEEEEe----CCccceeeecccccCCccceEE-----EEEECC
Q 024451          176 YYQ-QHGENEIPHVTSIAFSISGRLLFAGYSNG----DCYVWD----TLLAKVVLNLGSLQNSHEGRIT-----CLGLSA  241 (267)
Q Consensus       176 ~~~-~~~~~~~~~v~~~~~s~~~~~l~~g~~dg----~i~i~d----~~~~~~~~~~~~~~~~~~~~v~-----~~~~~p  241 (267)
                      +.. .....+...+..++|+|+++++++....+    .|++||    ..+++...........|.+.+.     .+.|+|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  321 (719)
T 1z68_A          242 VPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY  321 (719)
T ss_dssp             CCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT
T ss_pred             ccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECC
Confidence            100 00011334688999999988777754432    488899    7665433211000023555555     789999


Q ss_pred             CCCeEEE--eECCCcEEEE
Q 024451          242 DGSALCT--GSWDTNLKIW  258 (267)
Q Consensus       242 ~~~~l~s--gs~dg~i~~w  258 (267)
                      ||+.|+.  ...+|...||
T Consensus       322 dg~~l~~~~~~~~g~~~l~  340 (719)
T 1z68_A          322 DAISYYKIFSDKDGYKHIH  340 (719)
T ss_dssp             TSSCEEEEEECTTSCEEEE
T ss_pred             CCCeEEEEEEccCCceEEE
Confidence            9996554  5566755555

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.81  E-value=6e-17  Score=131.19  Aligned_cols=246  Identities=13%  Similarity=0.120  Sum_probs=169.7

Q ss_pred             ceeeCCCCCeEEEccCC------------------------CeEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEec
Q 024451            2 TCAFSPTGQSVACGGLD------------------------SVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVP   56 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d------------------------~~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~   56 (267)
                      .++++|+|+++++...+                        ++|.+||.....       +.... .++-.....+++.|
T Consensus        28 ~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           28 GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE-------ILQSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC-------EEEEECTTTCSSEEEEEECT
T ss_pred             EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe-------EEeccCCCccCCceEEEECC
Confidence            47899999999998877                        478888865321       22222 24445678899998


Q ss_pred             CCCeeEEEeeCCCeEEEEeCCCCe-eEEEeCCccc----cCCccceEEEEEeCCCCeEEEEec-CCCeEEEEeCCCcccc
Q 024451           57 DEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQ----SGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRA  130 (267)
Q Consensus        57 ~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~s~~-~d~~i~iwd~~~~~~~  130 (267)
                      ++. ++++...++.|++||..... ....+.....    .++-.....+++++.+++++++.+ .++.|++|+..  ...
T Consensus       101 ~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~--g~~  177 (329)
T 3fvz_A          101 DGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS--GKF  177 (329)
T ss_dssp             TSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT--SCE
T ss_pred             CCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC--CCE
Confidence            764 77788888999999986542 2333321110    223446788999875677888886 68999999953  333


Q ss_pred             eEEeec----------cccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451          131 VRTFHG----------HEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  199 (267)
Q Consensus       131 ~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  199 (267)
                      +..+..          +......++++|+ +.++++...++.|++||..+++.+..+...   .....+..++|+| +..
T Consensus       178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~---~~~~~~~~~~~~p-g~~  253 (329)
T 3fvz_A          178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA---SFGRNVFAISYIP-GFL  253 (329)
T ss_dssp             EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT---TTTTCEEEEEEET-TEE
T ss_pred             EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc---ccCCCcceeeecC-CEE
Confidence            444422          1223789999998 777788888999999999877765544221   2234578889998 333


Q ss_pred             EEE-------EEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          200 LFA-------GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       200 l~~-------g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +.+       ...+..+++||...++.+..+... ..+......++++|+|+++++...++.|++|++.+
T Consensus       254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS-SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            333       233458999998887766554211 24556688999999998889988999999998754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.81  E-value=3.4e-17  Score=133.35  Aligned_cols=236  Identities=10%  Similarity=0.071  Sum_probs=146.0

Q ss_pred             cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee--CCCeEEEEeCCCCeeEEEeCCccccCC
Q 024451           16 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTGLRTSVFGGEFQSGH   93 (267)
Q Consensus        16 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~   93 (267)
                      +.++.+.+|+++..+   +..... ....+......++|+|++. +++++.  .++.|++||+.++.......   ...+
T Consensus        13 ~~~~~i~v~~~d~~t---g~~~~~-~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~---~~~~   84 (347)
T 3hfq_A           13 KTSQGIYQGTLDTTA---KTLTND-GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT---VVAP   84 (347)
T ss_dssp             SSCCEEEEEEEETTT---TEEEEE-EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEE---EEEE
T ss_pred             CCCCCEEEEEEcCCC---CeEEEe-eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeee---eecC
Confidence            456789999886532   111111 1223445667799999764 443333  26899999997765322211   0124


Q ss_pred             ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc--ceEEeec---------cccceeEEEEecCCCEEEEeeCCCcE
Q 024451           94 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHG---------HEGDVNTVKFFPDGNRFGTGSDDGTC  162 (267)
Q Consensus        94 ~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i  162 (267)
                      ...+..+++++....++++...++.+++|++.....  .+..+..         +...+.+++|+|+++++++...++.|
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v  164 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKV  164 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEE
Confidence            456778889976544544444789999999853221  1222211         11247889999999977777778999


Q ss_pred             EEEeCC-CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE-EEeCCeEEEEeCCc--cce--eeecccccC--CccceE
Q 024451          163 RLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLL--AKV--VLNLGSLQN--SHEGRI  234 (267)
Q Consensus       163 ~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-g~~dg~i~i~d~~~--~~~--~~~~~~~~~--~~~~~v  234 (267)
                      .+||+. +++... ...... .....+..++|+|+|+++++ +..++.+.+|++..  ++.  .........  .....+
T Consensus       165 ~~~~~~~~g~~~~-~~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  242 (347)
T 3hfq_A          165 YVYNVSDAGQLSE-QSVLTM-EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA  242 (347)
T ss_dssp             EEEEECTTSCEEE-EEEEEC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred             EEEEECCCCcEEE-eeeEEc-CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence            999998 443222 111111 11224678999999997666 45678999998763  222  111111111  112458


Q ss_pred             EEEEECCCCCeE-EEeECCCcEEEEecC
Q 024451          235 TCLGLSADGSAL-CTGSWDTNLKIWAFG  261 (267)
Q Consensus       235 ~~~~~~p~~~~l-~sgs~dg~i~~w~~~  261 (267)
                      ..++|+|+|++| ++...++.|.+|++.
T Consensus       243 ~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          243 AAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             eeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            899999999987 556678999999986

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.81  E-value=1.7e-17  Score=153.52  Aligned_cols=233  Identities=15%  Similarity=0.031  Sum_probs=168.9

Q ss_pred             eeeCCCCCeEEEccCCCeEE-EeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSPTGQSVACGGLDSVCS-IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~-~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++|+ +|+.|+.++.++.+. +|++....       . ..+.+|...+..++|+|++ .+|++++.++.|++||+.++..
T Consensus       343 ~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-------~-~~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~  412 (1045)
T 1k32_A          343 RGGD-TKVAFIHGTREGDFLGIYDYRTGK-------A-EKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKP  412 (1045)
T ss_dssp             ECSS-SEEEEEEEETTEEEEEEEETTTCC-------E-EECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE
T ss_pred             eeEc-CCCeEEEEECCCceEEEEECCCCC-------c-eEecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCce
Confidence            5688 999999998888888 88875421       2 2233788899999999976 5788999999999999998876


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC----------CeEEEEeCCCcccceEEeeccccceeEEEEecCCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----------STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN  151 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  151 (267)
                      ....     .+|...+..++|+|. ++.+++++.+          +.|++||+... + ...+..|...+..+.|+|+|+
T Consensus       413 ~~~~-----~~~~~~v~~~~~SpD-G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-~-~~~l~~~~~~~~~~~~spdG~  484 (1045)
T 1k32_A          413 TVIE-----RSREAMITDFTISDN-SRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-K-IFAATTENSHDYAPAFDADSK  484 (1045)
T ss_dssp             EEEE-----ECSSSCCCCEEECTT-SCEEEEEEEECSSTTCSCCEEEEEEEETTTT-E-EEECSCSSSBEEEEEECTTSC
T ss_pred             EEec-----cCCCCCccceEECCC-CCeEEEEecCccccccCCCCCeEEEEECCCC-c-EEEeeCCCcccCCceEcCCCC
Confidence            5544     246777888999874 5666666554          48999998743 2 566667888889999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCee-------eEEE-Ee----------------------e--------cCCCCCCcEEEEEE
Q 024451          152 RFGTGSDDGTCRLFDIRTGHQ-------LQVY-YQ----------------------Q--------HGENEIPHVTSIAF  193 (267)
Q Consensus       152 ~l~~~~~d~~i~iwd~~~~~~-------~~~~-~~----------------------~--------~~~~~~~~v~~~~~  193 (267)
                      +++.++.++..++|+......       +..+ ..                      .        ........+..+++
T Consensus       485 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~  564 (1045)
T 1k32_A          485 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP  564 (1045)
T ss_dssp             EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEE
T ss_pred             EEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEE
Confidence            999999988888887543221       0000 00                      0        00011235788999


Q ss_pred             ccCCCEEEE-------------EEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          194 SISGRLLFA-------------GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       194 s~~~~~l~~-------------g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      +|++..+++             ......+++||..+++... +       ...+.+++|||||++|++++.| .+++|++
T Consensus       565 s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l-------~~~v~~~~~S~DG~~l~~~~~~-~i~~~d~  635 (1045)
T 1k32_A          565 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-V-------KNNLTDLRLSADRKTVMVRKDD-GKIYTFP  635 (1045)
T ss_dssp             CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-E-------EEEEEEEEECTTSCEEEEEETT-SCEEEEE
T ss_pred             cCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE-e-------ecCcceEEECCCCCEEEEEcCC-cEEEEeC
Confidence            999987775             1124578889987765321 1       1568899999999999998866 8999997


Q ss_pred             Cc
Q 024451          261 GG  262 (267)
Q Consensus       261 ~~  262 (267)
                      ..
T Consensus       636 ~~  637 (1045)
T 1k32_A          636 LE  637 (1045)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=2e-18  Score=154.32  Aligned_cols=242  Identities=9%  Similarity=0.051  Sum_probs=150.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCee-----eEEEEEEecCCCeeEEEeeCC--------
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG-----YVSCCQYVPDEDTHLITSSGD--------   68 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~d--------   68 (267)
                      .+.|+|+|++++++  |++|++||+....       ....+.+|..     ....+.|+|++. +|+.++.+        
T Consensus        21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ--ENNILVFNAEYGN-------SSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSY   90 (740)
T ss_dssp             CEEECSSSEEEEEE--TTEEEEEETTTCC-------EEEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEEECSSSCE
T ss_pred             ccEECCCCcEEEEc--CCcEEEEECCCCc-------eEEEEechhhhhhcccccceEECCCCC-EEEEEECCeeeEEEcc
Confidence            57899999999986  9999999986532       2223444432     223478899864 67777765        


Q ss_pred             -CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE-Eeeccccce-----
Q 024451           69 -QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDV-----  141 (267)
Q Consensus        69 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~i-----  141 (267)
                       +.+.+||+.++.....      ..+...+....|+|.+ +.++.+ .|+.|++|+..... ..+ ...++...+     
T Consensus        91 ~~~~~~~d~~~~~~~~l------~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~-~~~lt~~g~~~~~~~g~~  161 (740)
T 4a5s_A           91 TASYDIYDLNKRQLITE------ERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLP-SYRITWTGKEDIIYNGIT  161 (740)
T ss_dssp             EEEEEEEETTTTEECCS------SCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSC-CEECCSCCBTTTEEESBC
T ss_pred             ceEEEEEECCCCcEEEc------ccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCc-eEEEcCCCCccceecCcc
Confidence             5567999998864321      2355678899999755 445555 56899999986433 221 112222222     


Q ss_pred             ------------eEEEEecCCCEEEEeeCCC------------------------------------cEEEEeCCC---C
Q 024451          142 ------------NTVKFFPDGNRFGTGSDDG------------------------------------TCRLFDIRT---G  170 (267)
Q Consensus       142 ------------~~~~~~~~~~~l~~~~~d~------------------------------------~i~iwd~~~---~  170 (267)
                                  ..+.|+|||+.||..+.|.                                    +|.+||+.+   +
T Consensus       162 ~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~  241 (740)
T 4a5s_A          162 DWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSV  241 (740)
T ss_dssp             CHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSS
T ss_pred             cccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCC
Confidence                        3489999999998875332                                    477788877   5


Q ss_pred             ee--eEEEEeec-CCCCCCcEEEEEEccCCCEEEEEEeC----CeEEEEeCCccc----eeeecccccCCccceEE----
Q 024451          171 HQ--LQVYYQQH-GENEIPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLLAK----VVLNLGSLQNSHEGRIT----  235 (267)
Q Consensus       171 ~~--~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~g~~d----g~i~i~d~~~~~----~~~~~~~~~~~~~~~v~----  235 (267)
                      +.  ...+.... ...+...+..++|+|+|+.++.....    ..|++||..+++    ...........|...|.    
T Consensus       242 ~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~  321 (740)
T 4a5s_A          242 TNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP  321 (740)
T ss_dssp             SCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred             CcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence            21  11111100 00133468899999999977665443    379999987765    11111001123443333    


Q ss_pred             -EEEECCCCCeEE-EeE-CCC--cEEEEecCc
Q 024451          236 -CLGLSADGSALC-TGS-WDT--NLKIWAFGG  262 (267)
Q Consensus       236 -~~~~~p~~~~l~-sgs-~dg--~i~~w~~~~  262 (267)
                       ...|+|||+.|+ ..+ .+|  .|.+|+..+
T Consensus       322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~  353 (740)
T 4a5s_A          322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDK  353 (740)
T ss_dssp             CCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred             CCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence             678999999877 665 445  466666543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.80  E-value=1.6e-16  Score=130.04  Aligned_cols=242  Identities=12%  Similarity=0.107  Sum_probs=148.8

Q ss_pred             CCCCeEEEc----cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC----CeEEEEeCCC
Q 024451            7 PTGQSVACG----GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDITT   78 (267)
Q Consensus         7 ~~g~~l~~~----~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----~~v~iwd~~~   78 (267)
                      +....+..|    +.++.+.+|.+....   +........  +......++|+|++ ++|++++.+    +.|.+|++..
T Consensus        11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~---g~~~~~~~~--~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~   84 (361)
T 3scy_A           11 DSELTMLVGTYTSGNSKGIYTFRFNEET---GESLPLSDA--EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDK   84 (361)
T ss_dssp             GGEEEEEEEECCSSSCCEEEEEEEETTT---CCEEEEEEE--ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEET
T ss_pred             CCceEEEEEeccCCCCCCEEEEEEeCCC---CCEEEeecc--cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeC
Confidence            334445555    456789999886422   222222222  55667778999976 467777775    7999998865


Q ss_pred             --CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc--eEEe---ec--------cccceeE
Q 024451           79 --GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--VRTF---HG--------HEGDVNT  143 (267)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--~~~~---~~--------~~~~i~~  143 (267)
                        +.......   ...+......+++  ....++++...++.+.+|++......  ....   .+        +...+++
T Consensus        85 ~~g~~~~~~~---~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~  159 (361)
T 3scy_A           85 EKGTLHLLNT---QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHC  159 (361)
T ss_dssp             TTTEEEEEEE---EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEE
T ss_pred             CCCcEEEeeE---eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceE
Confidence              33222111   0113334556666  34445555567899999998643221  1111   11        1223578


Q ss_pred             EEEecCCCEEEEee-CCCcEEEEeCCCCee------eEEE---EeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEE
Q 024451          144 VKFFPDGNRFGTGS-DDGTCRLFDIRTGHQ------LQVY---YQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVW  212 (267)
Q Consensus       144 ~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~------~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~  212 (267)
                      ++|+|++++++++. .++.|++|++.....      +...   .... ......+..++|+|++++++++. .++.|.+|
T Consensus       160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  238 (361)
T 3scy_A          160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK-VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAF  238 (361)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEETTTCEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee-cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEE
Confidence            99999999665554 588999999875442      2111   0001 11123468899999999887777 58999999


Q ss_pred             eCCccce--eeecccccCCccceEEEEEECCCCCeEEEeECC--CcEEEEecC
Q 024451          213 DTLLAKV--VLNLGSLQNSHEGRITCLGLSADGSALCTGSWD--TNLKIWAFG  261 (267)
Q Consensus       213 d~~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d--g~i~~w~~~  261 (267)
                      |+..++.  +...... ..+......++|+|||++|+++..+  +.|.+|++.
T Consensus       239 ~~~~g~~~~~~~~~~~-~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          239 RYADGMLDEIQTVAAD-TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEETTEEEEEEEEESC-SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             EecCCceEEeEEEecC-CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            9875432  2112111 2233456899999999998766654  899999985

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.78  E-value=2.3e-17  Score=143.61  Aligned_cols=227  Identities=11%  Similarity=0.085  Sum_probs=151.9

Q ss_pred             ceeeCCCCCeEEEccC---CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451            2 TCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      ..+|+|| +++++++.   +...++|.+......  .........++.    ..+|+|+++..+++.+.++.+.+||+.+
T Consensus        69 ~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g--~~~~l~~~~~~~----~~~~s~dg~~~~~~s~~~~~~~l~d~~~  141 (582)
T 3o4h_A           69 DPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG--EEQRLEAVKPMR----ILSGVDTGEAVVFTGATEDRVALYALDG  141 (582)
T ss_dssp             EECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT--CCEECTTSCSBE----EEEEEECSSCEEEEEECSSCEEEEEEET
T ss_pred             cccCCCC-eEEEEeccCCCCcceEEEEEeccCCC--ccccccCCCCce----eeeeCCCCCeEEEEecCCCCceEEEccC
Confidence            3578999 77777664   556677766531011  111111122222    4467777655445444445555999998


Q ss_pred             CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC----CeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE
Q 024451           79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG  154 (267)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  154 (267)
                      +.......      +..  .++.++| +++.+++++.+    ..|++||+...  ....+..|...+..++|+|||+.++
T Consensus       142 g~~~~l~~------~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g--~~~~l~~~~~~~~~~~~SpDG~~l~  210 (582)
T 3o4h_A          142 GGLRELAR------LPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSG--GLRVFDSGEGSFSSASISPGMKVTA  210 (582)
T ss_dssp             TEEEEEEE------ESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTC--CCEEECCSSCEEEEEEECTTSCEEE
T ss_pred             CcEEEeec------CCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCC--CceEeecCCCccccceECCCCCEEE
Confidence            86554432      111  6777886 45677766666    78999998643  2456677888899999999999999


Q ss_pred             EeeCCC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEE--------EccCCCEEEEEEeCCeEEEEeCCccceeeecc
Q 024451          155 TGSDDG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA--------FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG  224 (267)
Q Consensus       155 ~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~  224 (267)
                      ++..++  .|.+||+.+++.. . ...+    ...+..+.        |+|+|.++++++.+|.+++|++  ++...   
T Consensus       211 ~~~~~~~~~i~~~d~~~~~~~-~-~~~~----~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---  279 (582)
T 3o4h_A          211 GLETAREARLVTVDPRDGSVE-D-LELP----SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---  279 (582)
T ss_dssp             EEECSSCEEEEEECTTTCCEE-E-CCCS----CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---
T ss_pred             EccCCCeeEEEEEcCCCCcEE-E-ccCC----CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---
Confidence            888888  8999999887654 2 2211    11233334        9999988899999999999998  44322   


Q ss_pred             cccCCccceEEEEEECCCCCeEEEeECCCc---EEEEecCc
Q 024451          225 SLQNSHEGRITCLGLSADGSALCTGSWDTN---LKIWAFGG  262 (267)
Q Consensus       225 ~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~---i~~w~~~~  262 (267)
                          ...+.+.+++|+ +++++++++.+.+   +.+|+..+
T Consensus       280 ----~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          280 ----APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             ----CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             ----cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence                234678899999 9999998888755   55565554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.77  E-value=2.4e-16  Score=127.19  Aligned_cols=189  Identities=10%  Similarity=0.074  Sum_probs=134.6

Q ss_pred             eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCcc-ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-cc
Q 024451           60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA-DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GH  137 (267)
Q Consensus        60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~  137 (267)
                      .++++++.++.|++||..+++....+..    ++.. .+..+++++....+++++..++.|.+||+.... ....+. ++
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-~~~~~~~~~   76 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITI----ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-TLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC----TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-EEEEEECCB
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEc----CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-eEeeEEcCC
Confidence            4789999999999999998876655431    2211 366788887665677788888999999987533 333333 22


Q ss_pred             ----ccceeEEEEecCCCEEEEee------------CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451          138 ----EGDVNTVKFFPDGNRFGTGS------------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF  201 (267)
Q Consensus       138 ----~~~i~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  201 (267)
                          ...+..++|+|++++++++.            .++.|.+||+.+++....+..  .    ..+..++|+|++++++
T Consensus        77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~----~~~~~~~~s~dg~~l~  150 (337)
T 1pby_B           77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--P----RQITMLAWARDGSKLY  150 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--C----SSCCCEEECTTSSCEE
T ss_pred             cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--C----CCcceeEECCCCCEEE
Confidence                22578899999999988876            579999999988776544322  1    2356788999999888


Q ss_pred             EEEeCCeEEEEeCCccceeeeccccc------------------------------------------------------
Q 024451          202 AGYSNGDCYVWDTLLAKVVLNLGSLQ------------------------------------------------------  227 (267)
Q Consensus       202 ~g~~dg~i~i~d~~~~~~~~~~~~~~------------------------------------------------------  227 (267)
                      ++  ++.|++||....+....+....                                                      
T Consensus       151 ~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  228 (337)
T 1pby_B          151 GL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET  228 (337)
T ss_dssp             EE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred             Ee--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence            87  6899999987665432211000                                                      


Q ss_pred             --------CCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          228 --------NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       228 --------~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                              ..+...+.+++|+|+|++|+++  ++.|.+|++...
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~  270 (337)
T 1pby_B          229 GEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN  270 (337)
T ss_dssp             CCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT
T ss_pred             CCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC
Confidence                    0011234569999999999988  799999998654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.75  E-value=6e-16  Score=127.05  Aligned_cols=240  Identities=7%  Similarity=0.038  Sum_probs=144.5

Q ss_pred             EEEccC--CCeEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC-CCeeEEEeCC
Q 024451           12 VACGGL--DSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGG   87 (267)
Q Consensus        12 l~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~   87 (267)
                      +..|+.  ++.|.+|++...+   +........ .++...+..++|+|++ ++|++++.+ .|.+|++. ++........
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~---g~l~~~~~~~~~~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~~   79 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEK---LTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEASH   79 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTT---TEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEccCCCcEEEEEEECCC---CCEEEeeEEccCCCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeEe
Confidence            344443  2568888765321   111111111 1223356678999976 467888877 99999997 6654332210


Q ss_pred             ccccCCccceEEEEEeCCCCe-EEEEec-------------CCCeEEEEeCCCcccceEEee----ccccceeEEEEecC
Q 024451           88 EFQSGHTADVLSVSISGSNSR-MFVSGS-------------CDSTARLWDTRVASRAVRTFH----GHEGDVNTVKFFPD  149 (267)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~~~~-~~~s~~-------------~d~~i~iwd~~~~~~~~~~~~----~~~~~i~~~~~~~~  149 (267)
                      . ..+   ....++++|.+.. +++++.             .++.+.+|++.........+.    .+...+.+++|+|+
T Consensus        80 ~-~~g---~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd  155 (365)
T 1jof_A           80 P-IGG---HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT  155 (365)
T ss_dssp             E-CCS---SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT
T ss_pred             e-cCC---CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC
Confidence            0 001   1233556654332 344543             689999999863333222222    24567899999999


Q ss_pred             CCEEEEee-CCCcEEEEeCC-CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCC--cccee---e
Q 024451          150 GNRFGTGS-DDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTL--LAKVV---L  221 (267)
Q Consensus       150 ~~~l~~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~--~~~~~---~  221 (267)
                      |++++++. .++.|++||+. +++..... ......+...+..++|+|+|++++++.. ++.+.+|+..  +++..   .
T Consensus       156 G~~l~~~~~~~~~v~~~~~~~~g~~~~~~-~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~  234 (365)
T 1jof_A          156 ETYLYSADLTANKLWTHRKLASGEVELVG-SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH  234 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCEEEEE-EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEEECCCCCEEEee-eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc
Confidence            99887765 46799999998 66543211 1111111235789999999999988765 6899999754  33321   1


Q ss_pred             ecccccC---Cccc------eEEEEE-ECCCCCeEEEeECCC------cEEEEecC
Q 024451          222 NLGSLQN---SHEG------RITCLG-LSADGSALCTGSWDT------NLKIWAFG  261 (267)
Q Consensus       222 ~~~~~~~---~~~~------~v~~~~-~~p~~~~l~sgs~dg------~i~~w~~~  261 (267)
                      ....++.   .|..      .+..++ |+|||++|++++.+.      .|.+|++.
T Consensus       235 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             eEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence            1111111   1222      578999 999999988766533      89999874

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=1e-16  Score=132.24  Aligned_cols=238  Identities=14%  Similarity=0.068  Sum_probs=148.2

Q ss_pred             eeeCCCCCeEEEccC-CCe--EEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            3 CAFSPTGQSVACGGL-DSV--CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~-d~~--v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      .+|+|||++|+.++. ++.  |.+||+...       .......+|...+..+.|+|++ +.|+.++.++.|++||+.++
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-------~~~~lt~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g  112 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ-------VATQLTEGRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLATL  112 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTC-------EEEECCCSSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTTC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCC-------ceEEeeeCCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCCC
Confidence            579999999998887 774  666676532       1334445666666567899976 46888888999999999988


Q ss_pred             eeEEEeCCccccCCccceEEEE--EeCCCCeEEEE----------------------ecCCCeEEEEeCCCcccceEEee
Q 024451           80 LRTSVFGGEFQSGHTADVLSVS--ISGSNSRMFVS----------------------GSCDSTARLWDTRVASRAVRTFH  135 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~s----------------------~~~d~~i~iwd~~~~~~~~~~~~  135 (267)
                      .....+.     .+...+....  +++ ++++++.                      ...+..|.+||+...  ....+.
T Consensus       113 ~~~~~~~-----~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g--~~~~l~  184 (388)
T 3pe7_A          113 EENVVYQ-----VPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG--ESTVIL  184 (388)
T ss_dssp             CEEEEEE-----CCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC--CEEEEE
T ss_pred             cceeeee-----chhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC--ceEEee
Confidence            7655442     1222232222  243 4455442                      234568999998743  244455


Q ss_pred             ccccceeEEEEec-CCCEEEEeeCC------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCC
Q 024451          136 GHEGDVNTVKFFP-DGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNG  207 (267)
Q Consensus       136 ~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg  207 (267)
                      .+...+..+.|+| +++.++....+      ..|.++|...++.. .+..   ......+....|+|+|+.|+..+ .++
T Consensus       185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~---~~~~~~~~~~~~spdg~~l~~~~~~~~  260 (388)
T 3pe7_A          185 QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKT---HAEGESCTHEFWVPDGSALVYVSYLKG  260 (388)
T ss_dssp             EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCC---CCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred             cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Eeee---CCCCcccccceECCCCCEEEEEecCCC
Confidence            5667789999999 99988877653      37788887654332 2111   11112467889999999775544 333


Q ss_pred             ----eEEEEeCCccceeeecccccCCccce---EEEEEECCCCCeEEEe---------ECCCcEEEEecCc
Q 024451          208 ----DCYVWDTLLAKVVLNLGSLQNSHEGR---ITCLGLSADGSALCTG---------SWDTNLKIWAFGG  262 (267)
Q Consensus       208 ----~i~i~d~~~~~~~~~~~~~~~~~~~~---v~~~~~~p~~~~l~sg---------s~dg~i~~w~~~~  262 (267)
                          .|++||+.+++..... .. ..+...   ...++|+|||+.|+..         ..+..|.+|++.+
T Consensus       261 ~~~~~l~~~d~~~g~~~~l~-~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~  329 (388)
T 3pe7_A          261 SPDRFIYSADPETLENRQLT-SM-PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN  329 (388)
T ss_dssp             CCCEEEEEECTTTCCEEEEE-EE-CCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred             CCcceEEEEecCCCceEEEE-cC-CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence                3999998876532211 11 111000   1113689999988854         4466899998754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.73  E-value=5.6e-16  Score=125.74  Aligned_cols=157  Identities=11%  Similarity=0.054  Sum_probs=107.5

Q ss_pred             EEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE
Q 024451           53 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR  132 (267)
Q Consensus        53 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~  132 (267)
                      ++.+ +..++++++.+++|++||..++.....+..    +....+..+++++.+..++++...++.|.+||+... +...
T Consensus         6 ~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~-~~~~   79 (349)
T 1jmx_B            6 ALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM----PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTF   79 (349)
T ss_dssp             CCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC----SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEE
T ss_pred             cccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEec----CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC-cEEE
Confidence            3444 356888999999999999998876655532    111235678888765556677778899999998743 3343


Q ss_pred             Eee-cc-----ccceeEEEEecCCCEEEEeeCC------------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEc
Q 024451          133 TFH-GH-----EGDVNTVKFFPDGNRFGTGSDD------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  194 (267)
Q Consensus       133 ~~~-~~-----~~~i~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s  194 (267)
                      .+. .+     ...+..++|+|+++++++++.+            +.|.+||+.+++..........   ...+.+++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s  156 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM---PRQVYLMRAA  156 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC---CSSCCCEEEC
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC---CCcccceeEC
Confidence            343 22     2237889999999999988865            8999999987543221111111   1246788899


Q ss_pred             cCCCEEEEEEeCCeEEEEeCCccceee
Q 024451          195 ISGRLLFAGYSNGDCYVWDTLLAKVVL  221 (267)
Q Consensus       195 ~~~~~l~~g~~dg~i~i~d~~~~~~~~  221 (267)
                      |+++ ++++  ++.|++||..+++...
T Consensus       157 ~dg~-l~~~--~~~i~~~d~~~~~~~~  180 (349)
T 1jmx_B          157 DDGS-LYVA--GPDIYKMDVKTGKYTV  180 (349)
T ss_dssp             TTSC-EEEE--SSSEEEECTTTCCEEE
T ss_pred             CCCc-EEEc--cCcEEEEeCCCCceec
Confidence            9999 5554  3459999987766543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.72  E-value=1.5e-16  Score=141.70  Aligned_cols=238  Identities=10%  Similarity=0.019  Sum_probs=147.8

Q ss_pred             ceeeCCCCCeEEEccC---------CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEE
Q 024451            2 TCAFSPTGQSVACGGL---------DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV   72 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~---------d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~   72 (267)
                      +.+|+|||++|++++.         |+++++||+......     ....+   ...+..++|+|++. .|+.++ |+.|+
T Consensus        64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~-----~~~~l---~~~~~~~~~SPDG~-~la~~~-~~~i~  133 (719)
T 1z68_A           64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV-----RGNEL---PRPIQYLCWSPVGS-KLAYVY-QNNIY  133 (719)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-----CSSCC---CSSBCCEEECSSTT-CEEEEE-TTEEE
T ss_pred             eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc-----cceec---CcccccceECCCCC-EEEEEE-CCeEE
Confidence            4689999999999876         789999998653210     00111   13577899999875 567664 78999


Q ss_pred             EEeCCCCeeEEEeCCcc----ccCCcc---------ceEEEEEeCCCCeEEEEecCCC----------------------
Q 024451           73 LWDITTGLRTSVFGGEF----QSGHTA---------DVLSVSISGSNSRMFVSGSCDS----------------------  117 (267)
Q Consensus        73 iwd~~~~~~~~~~~~~~----~~~~~~---------~i~~~~~~~~~~~~~~s~~~d~----------------------  117 (267)
                      +||+.++..........    ..++..         ...++.|+|. ++.|++++.|.                      
T Consensus       134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~  212 (719)
T 1z68_A          134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINI  212 (719)
T ss_dssp             EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEE
T ss_pred             EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceee
Confidence            99998876543321100    011111         1147889874 56667665442                      


Q ss_pred             ------------eEEEEeCCCcccc--eE-----EeeccccceeEEEEecCCCEEEEeeCC----CcEEEEe----CCCC
Q 024451          118 ------------TARLWDTRVASRA--VR-----TFHGHEGDVNTVKFFPDGNRFGTGSDD----GTCRLFD----IRTG  170 (267)
Q Consensus       118 ------------~i~iwd~~~~~~~--~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd----~~~~  170 (267)
                                  .|++||+......  ..     .+.+|...+..++|+|+++.+++....    ..|.+||    ..++
T Consensus       213 ~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g  292 (719)
T 1z68_A          213 PYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW  292 (719)
T ss_dssp             ECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred             cCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence                        7889998743211  11     123577788999999998777664432    2488899    7666


Q ss_pred             eeeEEEE---eecCCCCCCcEE-----EEEEccCCCEEEE--EEeCC--eEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          171 HQLQVYY---QQHGENEIPHVT-----SIAFSISGRLLFA--GYSNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       171 ~~~~~~~---~~~~~~~~~~v~-----~~~~s~~~~~l~~--g~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      +......   ..    +...+.     .+.|+|+|+.++.  +..+|  .|++||....+. ..+    ..+...+..+.
T Consensus       293 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~l----t~~~~~v~~~~  363 (719)
T 1z68_A          293 DCPKTQEHIEES----RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQI----TSGKWEAINIF  363 (719)
T ss_dssp             ECCGGGEEEEEC----SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EEC----SCSSSCEEEEE
T ss_pred             ceEEEEeccccc----CCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Eec----ccCceEEEEEE
Confidence            5432221   11    112233     6789999996554  33445  677778765442 222    23444567776


Q ss_pred             ECCCCCeEEEeECC-----CcEEEEec
Q 024451          239 LSADGSALCTGSWD-----TNLKIWAF  260 (267)
Q Consensus       239 ~~p~~~~l~sgs~d-----g~i~~w~~  260 (267)
                      ++ +++.|+..+.+     +..++|.+
T Consensus       364 ~~-d~~~i~~~~~~~~~~~~~~~l~~~  389 (719)
T 1z68_A          364 RV-TQDSLFYSSNEFEEYPGRRNIYRI  389 (719)
T ss_dssp             EE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             EE-eCCEEEEEEecCCCCCceEEEEEE
Confidence            66 77777766654     88999975

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.72  E-value=2.1e-16  Score=130.37  Aligned_cols=237  Identities=11%  Similarity=0.010  Sum_probs=145.2

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEE--EecCCCeeEEE---------------
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ--YVPDEDTHLIT---------------   64 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s---------------   64 (267)
                      ..+|+|||+.|+.++.++.+.+||+....       .......+...+....  ++|++. +++.               
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~  156 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLE-------ENVVYQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWK  156 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHH
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCc-------ceeeeechhhcccccceeECCCCC-eeccccccCcccccccccc
Confidence            45799999999999999999999987532       2222333444443333  367654 4442               


Q ss_pred             -------eeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC------CCeEEEEeCCCcccce
Q 024451           65 -------SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAV  131 (267)
Q Consensus        65 -------~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~------d~~i~iwd~~~~~~~~  131 (267)
                             ...+..|.+||+.++......      .+...+..+.|+|.+++.++....      ...|.++|... . ..
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~-~~  228 (388)
T 3pe7_A          157 KFHEFYFTKPCCRLMRVDLKTGESTVIL------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-T-NM  228 (388)
T ss_dssp             HHHHHGGGCCCEEEEEEETTTCCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-C-CC
T ss_pred             hhhhhhccCCcceEEEEECCCCceEEee------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-C-ce
Confidence                   234578999999988654443      234457788899724455554443      33677777653 2 23


Q ss_pred             EEeeccc--cceeEEEEecCCCEEEEeeC--C---CcEEEEeCCCCeeeEEEEeecCCCCC-CcEEEEEEccCCCEEEEE
Q 024451          132 RTFHGHE--GDVNTVKFFPDGNRFGTGSD--D---GTCRLFDIRTGHQLQVYYQQHGENEI-PHVTSIAFSISGRLLFAG  203 (267)
Q Consensus       132 ~~~~~~~--~~i~~~~~~~~~~~l~~~~~--d---~~i~iwd~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~g  203 (267)
                      ..+..+.  ..+....|+|+|+.|+..+.  +   ..|.+||+.+++...... ....... .......|+|+|+.|+..
T Consensus       229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~spdg~~l~~~  307 (388)
T 3pe7_A          229 RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS-MPACSHLMSNYDGSLMVGDGSDAPVD  307 (388)
T ss_dssp             EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE-ECCEEEEEECTTSSEEEEEECCC---
T ss_pred             EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc-CCCceeeeecCCCCeEccCCCcceeE
Confidence            3443333  34778899999997765443  2   239999999876433211 1110000 000112689999988754


Q ss_pred             ---------EeCCeEEEEeCCccceeeecccccCCccc-----------eEEEEEECCCCCeEEEeE-CCCcEEEEec
Q 024451          204 ---------YSNGDCYVWDTLLAKVVLNLGSLQNSHEG-----------RITCLGLSADGSALCTGS-WDTNLKIWAF  260 (267)
Q Consensus       204 ---------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~p~~~~l~sgs-~dg~i~~w~~  260 (267)
                               ..+..|++||+..++... +    ..+..           .+.+++|+|||+.|+..+ .+|...||.+
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~-l----~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          308 VQDDSGYKIENDPFLYVFNMKNGTQHR-V----ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             ---------CCCCEEEEEETTTTEEEE-E----EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             eeeccccccCCCCEEEEEeccCCceEE-e----ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence                     345699999987755422 1    11222           467789999999888665 5888888864

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.72  E-value=2.4e-15  Score=132.75  Aligned_cols=240  Identities=10%  Similarity=-0.010  Sum_probs=153.0

Q ss_pred             eeeCCCCCeEEEc--cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEE---------EEEEe--cCCCe-eEEEeeCC
Q 024451            3 CAFSPTGQSVACG--GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVS---------CCQYV--PDEDT-HLITSSGD   68 (267)
Q Consensus         3 ~~~~~~g~~l~~~--~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~--~~~~~-~l~s~~~d   68 (267)
                      .+|++++..+++.  +.++...+|......       ..+.+..|...+.         ...|+  |++.. ++++...+
T Consensus        29 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~  101 (662)
T 3azo_A           29 VGAVGDEVWWVAPRPAEAGRATLVRRRADG-------AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD  101 (662)
T ss_dssp             EEEETTEEEEEEEETTTTTEEEEEEECTTS-------CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred             eEEcCCeEEEEecCcccCCcEEEEEECCCC-------CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence            5678877777777  678899999863211       1223444444444         45555  87764 34444446


Q ss_pred             CeEEEEeCC--C-CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC----------CeEEEEeCCCcc----cce
Q 024451           69 QTCVLWDIT--T-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----------STARLWDTRVAS----RAV  131 (267)
Q Consensus        69 ~~v~iwd~~--~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d----------~~i~iwd~~~~~----~~~  131 (267)
                      ..|.+|++.  . +.... +.......|...+..++|+|. ++.++.++.+          ..|++||+....    ...
T Consensus       102 ~~l~~~~~~~~g~~~~~~-l~~~~~~~~~~~~~~~~~spD-g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  179 (662)
T 3azo_A          102 QRLYAFEPDAPGGAVPRP-LTPVSAVGGGLRWADPVLLPE-RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV  179 (662)
T ss_dssp             CCEEEECTTSTTCCCCEE-CSCCCCSTTCEEEEEEEEETT-TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred             CeEEEEcCCCCCCCCCEe-ccCCccCCCCccccCcEECCC-CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce
Confidence            778777776  2 43222 211000115667888999975 4556666655          579999986410    233


Q ss_pred             EEee-ccccceeEEEEecCCCEEEEeeCC--------CcEEEEeCC-CCe--eeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451          132 RTFH-GHEGDVNTVKFFPDGNRFGTGSDD--------GTCRLFDIR-TGH--QLQVYYQQHGENEIPHVTSIAFSISGRL  199 (267)
Q Consensus       132 ~~~~-~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iwd~~-~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~  199 (267)
                      ..+. .+...+..+.|+|||++|+..+.+        ..|.+||+. +++  ....+...+    ...+..+.|+|+|++
T Consensus       180 ~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~----~~~~~~~~~spdg~l  255 (662)
T 3azo_A          180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP----EEAIAQAEWAPDGSL  255 (662)
T ss_dssp             EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET----TBCEEEEEECTTSCE
T ss_pred             eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC----CceEcceEECCCCeE
Confidence            4454 555678889999999999987755        379999998 451  233333221    235789999999997


Q ss_pred             EEEEEeCC--eEEEEeCCccceeeecccccCCccce--------EEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          200 LFAGYSNG--DCYVWDTLLAKVVLNLGSLQNSHEGR--------ITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       200 l~~g~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~--------v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ++++..++  .|++||...++.....    ..+...        +..++|+|+++++++++. +.++||.+
T Consensus       256 ~~~~~~~~~~~l~~~~~~~~~~~~l~----~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          256 IVATDRTGWWNLHRVDPATGAATQLC----RREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             EEEECTTSSCEEEEECTTTCCEEESS----CCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             EEEECCCCCeEEEEEECCCCceeecc----cccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence            77777777  7777776544432211    111111        457899999999999998 99999943

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.71  E-value=1.8e-14  Score=114.67  Aligned_cols=227  Identities=9%  Similarity=0.031  Sum_probs=151.8

Q ss_pred             ceeeCCCCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      ..+|+|+|+ +++++..++.|..|+....         ...+..+...+.++.+.|++ .++++...++.|.+||..++.
T Consensus        32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~  101 (296)
T 3e5z_A           32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGE  101 (296)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTSC---------EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCC
T ss_pred             CCeEeCCCCEEEEEeCCCCEEEEEECCCC---------eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCc
Confidence            367999998 7888888999999997531         22344566778899999976 456666667899999997776


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEE----ec-------------CCCeEEEEeCCCcccceEEeeccccceeE
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVS----GS-------------CDSTARLWDTRVASRAVRTFHGHEGDVNT  143 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s----~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~  143 (267)
                      ........ .......+..+++++ +++++++    +.             ..+.|..++..  . ....+..+......
T Consensus       102 ~~~~~~~~-~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g-~~~~~~~~~~~~~g  176 (296)
T 3e5z_A          102 WESIADSF-EGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G-TLSAPIRDRVKPNG  176 (296)
T ss_dssp             EEEEECEE-TTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S-CEEEEECCCSSEEE
T ss_pred             EEEEeecc-CCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC--C-CEEEeecCCCCCcc
Confidence            44332110 011122355677876 5677776    32             13456556543  2 23344455566789


Q ss_pred             EEEecCCCEEEEeeCCCcEEEEeCC-CCee---eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce
Q 024451          144 VKFFPDGNRFGTGSDDGTCRLFDIR-TGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  219 (267)
Q Consensus       144 ~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~  219 (267)
                      ++|+|+++.+++.+.++.|.+||+. +++.   ...+ . .   ....+..++++++|++.++.  ++.|.+||.. ++.
T Consensus       177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~  248 (296)
T 3e5z_A          177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-V---EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE  248 (296)
T ss_dssp             EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-C---SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred             EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-C---CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence            9999999988777888999999986 4433   1222 1 1   12345678999999977766  8899999975 444


Q ss_pred             eeecccccCCccceEEEEEE-CCCCCeEEEeECCCcEE
Q 024451          220 VLNLGSLQNSHEGRITCLGL-SADGSALCTGSWDTNLK  256 (267)
Q Consensus       220 ~~~~~~~~~~~~~~v~~~~~-~p~~~~l~sgs~dg~i~  256 (267)
                      +..+    ..+.. +.+++| +|+++.|.+++.++..+
T Consensus       249 ~~~~----~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~  281 (296)
T 3e5z_A          249 LGRV----LTPQT-TSNLCFGGPEGRTLYMTVSTEFWS  281 (296)
T ss_dssp             EEEE----ECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred             EEEE----ECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence            4333    22344 788999 69999999888874333

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.70  E-value=7.3e-15  Score=120.45  Aligned_cols=238  Identities=11%  Similarity=0.082  Sum_probs=151.1

Q ss_pred             eeeCCCCCeEEEcc----------CCCeEEEeecCCCCCCCCCCcccccccC------CeeeEEEEEEecCCCeeEEEee
Q 024451            3 CAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRMLSG------HKGYVSCCQYVPDEDTHLITSS   66 (267)
Q Consensus         3 ~~~~~~g~~l~~~~----------~d~~v~~w~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~l~s~~   66 (267)
                      ++|+|||++|..+.          .+++|.+||.....       ....+..      +......++++|++. +|+++.
T Consensus        55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-------~~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~v~n  126 (361)
T 2oiz_A           55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT-------FEKEISLPPKRVQGLNYDGLFRQTTDGK-FIVLQN  126 (361)
T ss_dssp             EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC-------EEEEEEECTTBCCBCCCGGGEEECTTSS-EEEEEE
T ss_pred             eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc-------EEEEEEcCccccccCCCcceEEECCCCC-EEEEEC
Confidence            68999999998876          36789999975421       1221111      223345688999875 566554


Q ss_pred             -C-CCeEEEEeCCCCeeEEE-eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE------Eeecc
Q 024451           67 -G-DQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR------TFHGH  137 (267)
Q Consensus        67 -~-d~~v~iwd~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~------~~~~~  137 (267)
                       . +++|.+||+++++.... +..       .....+.+.|...+.+++.+.||.+.+|+.....+...      .+..+
T Consensus       127 ~~~~~~v~v~d~~~~~~~~~~i~~-------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~  199 (361)
T 2oiz_A          127 ASPATSIGIVDVAKGDYVEDVTAA-------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVK  199 (361)
T ss_dssp             ESSSEEEEEEETTTTEEEEEEGGG-------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTT
T ss_pred             CCCCCeEEEEECCCCcEEEEEecC-------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCC
Confidence             3 68999999998876554 321       11122445555556778888999999998754333221      11111


Q ss_pred             ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEE-EeecC-----CC-CCCcEEEEEEccCCCEEEEEEe-----
Q 024451          138 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY-YQQHG-----EN-EIPHVTSIAFSISGRLLFAGYS-----  205 (267)
Q Consensus       138 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~-----~~-~~~~v~~~~~s~~~~~l~~g~~-----  205 (267)
                      ..++ .+.+.|++..++..+.++.+.++|+........- +....     .. .......++|+|++..+++...     
T Consensus       200 ~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~  278 (361)
T 2oiz_A          200 DDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE  278 (361)
T ss_dssp             TSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred             CCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence            2221 2334677777777778899999998754322110 00000     00 0001123689999888877654     


Q ss_pred             ------CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          206 ------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       206 ------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                            .+.|.+||..+.+.+..+.    .+.  ..+++|+|+|++|++++. +.|.+||....
T Consensus       279 ~~~~~~~~~v~viD~~t~~~v~~i~----~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          279 GTHKFPAAEIWVMDTKTKQRVARIP----GRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             TCTTCCCSEEEEEETTTTEEEEEEE----CTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             ccccCCCceEEEEECCCCcEEEEEe----cCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence                  3489999999888776542    233  789999999999998876 99999997654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.69  E-value=3.1e-14  Score=111.54  Aligned_cols=238  Identities=9%  Similarity=0.010  Sum_probs=158.5

Q ss_pred             ceeeCCCCCeEE-EccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~-~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      .++++++|++++ +...++.|.+|+.....       .......+...+.++.+.+++. ++++.. ++.|.+||.....
T Consensus        28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~   98 (270)
T 1rwi_B           28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTG-------TTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNN   98 (270)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEECC------------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSC
T ss_pred             ceEECCCCCEEEEccCCCCcEEEecCCCcc-------cceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCce
Confidence            467889999888 65788999999864321       1111122334567788888654 444444 8899999987654


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ... +.    ......+..+.+++ +++++++...++.|.+|+..... ...........+..++++|+++.+++...++
T Consensus        99 ~~~-~~----~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~  171 (270)
T 1rwi_B           99 QTV-LP----FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKT-QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNN  171 (270)
T ss_dssp             CEE-CC----CCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCS-CEECCCCSCCSCCCEEECTTCCEEEEEGGGT
T ss_pred             Eee-ee----cCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCce-eEeeccccCCCceeEEEeCCCCEEEEECCCC
Confidence            322 21    11224577888886 45677777778899999754322 1111122234578899999999888777788


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      .|.+||.........  .   ......+..++++++|.+.++...++.|.+||........ .   ...+...+.+++++
T Consensus       172 ~i~~~~~~~~~~~~~--~---~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~---~~~~~~~p~~i~~~  242 (270)
T 1rwi_B          172 RVVKLEAESNNQVVL--P---FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-L---PFTGLNTPLAVAVD  242 (270)
T ss_dssp             EEEEECTTTCCEEEC--C---CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-C---CCCSCSCEEEEEEC
T ss_pred             EEEEEecCCCceEee--c---ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-e---ccCCCCCceeEEEC
Confidence            999999876543211  1   1112457899999999877777778899999976543221 1   11233567899999


Q ss_pred             CCCCeEEEeECCCcEEEEecCceE
Q 024451          241 ADGSALCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       241 p~~~~l~sgs~dg~i~~w~~~~~~  264 (267)
                      |+|+++++.+.++.|+++++...+
T Consensus       243 ~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          243 SDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             TTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCCCEEEEECCCCEEEEEcCCCcc
Confidence            999988988899999999876544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.68  E-value=3.2e-13  Score=109.09  Aligned_cols=235  Identities=12%  Similarity=0.057  Sum_probs=148.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC----CeEEEEeCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDIT   77 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----~~v~iwd~~   77 (267)
                      .++|+|+|++++++..++.|.+||.....       .......+...+.++.+.|++ .++++...+    +.|.+||.+
T Consensus        49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~  120 (333)
T 2dg1_A           49 GLNFDRQGQLFLLDVFEGNIFKINPETKE-------IKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATEN  120 (333)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCC-------EEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTT
T ss_pred             CcEECCCCCEEEEECCCCEEEEEeCCCCc-------EEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCC
Confidence            46789999988888899999999875421       222222455678999999876 455555555    689999998


Q ss_pred             CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC------CCeEEEEeCCCcccceEEeeccccceeEEEEecCCC
Q 024451           78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN  151 (267)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  151 (267)
                      ++.....+..   ......+..+.+++. ++++++...      .+.|..++...  .....+..+...+..++|+|+++
T Consensus       121 ~~~~~~~~~~---~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          121 GDNLQDIIED---LSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDF--RTVTPIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             SCSCEEEECS---SSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTS--CCEEEEEEEESSEEEEEECTTSS
T ss_pred             CCEEEEEEcc---CccCCcccceEECCC-CCEEEEeccccccCCCceEEEEeCCC--CEEEEeecCCCcccceEECCCCC
Confidence            7654433221   123446788888864 566666543      34566666542  12233333344578899999998


Q ss_pred             EE-EEeeCCCcEEEEeCCC-CeeeEEEE---eecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccc
Q 024451          152 RF-GTGSDDGTCRLFDIRT-GHQLQVYY---QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL  226 (267)
Q Consensus       152 ~l-~~~~~d~~i~iwd~~~-~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~  226 (267)
                      .+ ++...++.|.+||+++ ++....+.   ...... ...+..++++++|++.++...++.|.+||.. ++.+..+...
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~  272 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIP  272 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECT
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcC
Confidence            55 4555678999999864 33222111   000111 1246789999999988888778999999974 4433332110


Q ss_pred             c--CCccceEEEEEECCCCCeEEEeECC
Q 024451          227 Q--NSHEGRITCLGLSADGSALCTGSWD  252 (267)
Q Consensus       227 ~--~~~~~~v~~~~~~p~~~~l~sgs~d  252 (267)
                      .  ..|...+.+++|+|+++.|..++.+
T Consensus       273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          273 GRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             TGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCccccccCcceEEECCCCCEEEEEeCc
Confidence            0  0122257889999998777655555

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.67  E-value=2.6e-13  Score=107.28  Aligned_cols=209  Identities=12%  Similarity=0.162  Sum_probs=144.6

Q ss_pred             cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc-cccCCccceEEEEEeCCCCeEEEEecC-CCeEE
Q 024451           43 SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGSC-DSTAR  120 (267)
Q Consensus        43 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~s~~~-d~~i~  120 (267)
                      .++-....++++.|++ .++++...++.|++||... .....+... ...++...+..+++.+++++++++... ++.|+
T Consensus        26 ~g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TTCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CCccCCCceEEECCCC-CEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            3555678889999875 4677778899999999874 334443211 112344567888886556777776643 78999


Q ss_pred             EEeCCCcccceEEee-ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451          121 LWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  199 (267)
Q Consensus       121 iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  199 (267)
                      +||..  ......+. .+...+..++++|+++.+++...++.|.+||.. ++....+..   ......+..+++++++++
T Consensus       104 ~~d~~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~---~~~~~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          104 IYNQY--GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGC---SKHLEFPNGVVVNDKQEI  177 (286)
T ss_dssp             EECTT--SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC---TTTCSSEEEEEECSSSEE
T ss_pred             EECCC--CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCC---CCccCCcEEEEECCCCCE
Confidence            99943  23344443 234568899999999988888888999999965 443333221   112235789999999998


Q ss_pred             EEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC-cEEEEecCc
Q 024451          200 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-NLKIWAFGG  262 (267)
Q Consensus       200 l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg-~i~~w~~~~  262 (267)
                      +++...++.|++||.. .+.+..+..  ..+......++++|+|+++++...++ .|.+|+..+
T Consensus       178 ~v~~~~~~~i~~~~~~-g~~~~~~~~--~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g  238 (286)
T 1q7f_A          178 FISDNRAHCVKVFNYE-GQYLRQIGG--EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG  238 (286)
T ss_dssp             EEEEGGGTEEEEEETT-CCEEEEESC--TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred             EEEECCCCEEEEEcCC-CCEEEEEcc--CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC
Confidence            8888889999999964 333333321  12234678999999999999888776 999998655

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.67  E-value=3e-15  Score=133.85  Aligned_cols=208  Identities=9%  Similarity=0.061  Sum_probs=135.6

Q ss_pred             eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC---------Ce
Q 024451           48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---------ST  118 (267)
Q Consensus        48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d---------~~  118 (267)
                      ...+++|+|++ ++++++  |++|++||+.++.....+.......+......+.++|. ++.++.++.+         +.
T Consensus        18 ~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           18 KLYSLRWISDH-EYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCEEECSSS-EEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTT-SSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccEECCCC-cEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCC-CCEEEEEECCeeeEEEccceE
Confidence            35578999976 677775  99999999999887666543322222223345778864 5666666655         56


Q ss_pred             EEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCC----C---------C
Q 024451          119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN----E---------I  185 (267)
Q Consensus       119 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~---------~  185 (267)
                      +.+||+....  ...+..|...+...+|+|+|+.+|.+ .|+.|.+||+.+++............    .         .
T Consensus        94 ~~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           94 YDIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            7799987432  34466677789999999999999887 46899999998876443211110000    0         0


Q ss_pred             CcEEEEEEccCCCEEEEEEeCC------------------------------------eEEEEeCCc---cc--eeeecc
Q 024451          186 PHVTSIAFSISGRLLFAGYSNG------------------------------------DCYVWDTLL---AK--VVLNLG  224 (267)
Q Consensus       186 ~~v~~~~~s~~~~~l~~g~~dg------------------------------------~i~i~d~~~---~~--~~~~~~  224 (267)
                      .....+.|||||+.|+.+..|.                                    .|++||+..   ++  ....+.
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~  250 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT  250 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence            1123588999999998875331                                    477788776   52  111111


Q ss_pred             c--ccCCccceEEEEEECCCCCeEEEeEC----CCcEEEEecCc
Q 024451          225 S--LQNSHEGRITCLGLSADGSALCTGSW----DTNLKIWAFGG  262 (267)
Q Consensus       225 ~--~~~~~~~~v~~~~~~p~~~~l~sgs~----dg~i~~w~~~~  262 (267)
                      .  ....|...+..++|+|||+.++....    +..|.+|++.+
T Consensus       251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t  294 (740)
T 4a5s_A          251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE  294 (740)
T ss_dssp             CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred             CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence            0  00136778999999999997665433    33688888643

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=3.7e-15  Score=123.03  Aligned_cols=229  Identities=13%  Similarity=0.012  Sum_probs=142.2

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEE-------------------EEEecCCCeeEE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC-------------------CQYVPDEDTHLI   63 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~~~l~   63 (267)
                      +.|+|+|+.|+.++.++.|.+||+....       .......+......                   +.++|++. .++
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~  157 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLE-------EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEK  157 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHH
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCC-------cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCc-cee
Confidence            5689999999999999999999976421       11122222221111                   23456543 333


Q ss_pred             Ee-----eCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC------CeEEEEeCCCcccceE
Q 024451           64 TS-----SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVR  132 (267)
Q Consensus        64 s~-----~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d------~~i~iwd~~~~~~~~~  132 (267)
                      .+     ..+..|.+||+.++......      .+...+..+.|+|.+++.++..+.+      ..|.+|++.. . ...
T Consensus       158 ~~~~~~~~~~~~l~~~d~~~g~~~~~~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~-~~~  229 (396)
T 3c5m_A          158 FAEFYHTNPTCRLIKVDIETGELEVIH------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-S-NVR  229 (396)
T ss_dssp             HHHHHHTCCCEEEEEEETTTCCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-C-CCE
T ss_pred             eeeeccCCCcceEEEEECCCCcEEeec------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-C-cee
Confidence            32     45678999999887654443      2345577888887334444443322      4688888753 2 223


Q ss_pred             Eeecc--ccceeEEEEecCCCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEEE
Q 024451          133 TFHGH--EGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGY  204 (267)
Q Consensus       133 ~~~~~--~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~  204 (267)
                      .+..+  ...+..+.|+|+|+.|+..+.+     +.|.+||+.+++..... . . .    ... ..|+| ++++++.+.
T Consensus       230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~-~-~----~~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-V-M-P----PCS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-E-C-C----SEE-EEEECSSSSEEEEEE
T ss_pred             EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-e-C-C----CCC-CCccCCCCceEEEec
Confidence            33323  2357789999999987776543     44999999887643321 1 1 1    123 78999 999888754


Q ss_pred             ----------------eCCeEEEEeCCccceeeecccccCCccc-----------eEEEEEECCCCCeEEEeEC-CCcEE
Q 024451          205 ----------------SNGDCYVWDTLLAKVVLNLGSLQNSHEG-----------RITCLGLSADGSALCTGSW-DTNLK  256 (267)
Q Consensus       205 ----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~p~~~~l~sgs~-dg~i~  256 (267)
                                      .++.|++||...++... +    ..+..           .+..++|+|+|+.|+.++. ++...
T Consensus       302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~  376 (396)
T 3c5m_A          302 CDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-L----CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPA  376 (396)
T ss_dssp             CCC----------CCCCCCEEEEEETTTTBCCE-E----EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred             CCcceeeccccccccCCCCcEEEEecccCceEE-c----cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCce
Confidence                            24789999987654321 1    11221           2456789999999887665 66777


Q ss_pred             EEec
Q 024451          257 IWAF  260 (267)
Q Consensus       257 ~w~~  260 (267)
                      ||.+
T Consensus       377 l~~~  380 (396)
T 3c5m_A          377 IYIA  380 (396)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.65  E-value=2.9e-14  Score=125.76  Aligned_cols=236  Identities=14%  Similarity=0.107  Sum_probs=144.0

Q ss_pred             CCCCCe-EEEccC-CCeEEEeecCCCCCCCCCCcccccccC-----CeeeEEEEEEecCCCeeEEEeeCC----------
Q 024451            6 SPTGQS-VACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDEDTHLITSSGD----------   68 (267)
Q Consensus         6 ~~~g~~-l~~~~~-d~~v~~w~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l~s~~~d----------   68 (267)
                      +|||+. |+.++. +..|.+++...+.  .+   ..+.+..     |...+..++|+|++. .|++++.|          
T Consensus        87 SPDg~~~la~~~~~~~~l~~~~~~~~g--~~---~~~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           87 RPAGGPLLVFTHFGDQRLYAFEPDAPG--GA---VPRPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CSSSSCEEEEEBTTTCCEEEECTTSTT--CC---CCEECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEE
T ss_pred             ecCCCeEEEEEECCCCeEEEEcCCCCC--CC---CCEeccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCce
Confidence            399988 766554 4555555543000  01   1122333     678889999999875 67777766          


Q ss_pred             CeEEEEeCCC------CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC--------CeEEEEeCCCcc---cce
Q 024451           69 QTCVLWDITT------GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVAS---RAV  131 (267)
Q Consensus        69 ~~v~iwd~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d--------~~i~iwd~~~~~---~~~  131 (267)
                      ..|++||+.+      +......     ..+...+..+.|+|. ++.++..+.+        ..|.+||+....   ...
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~  234 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELS-----DDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTR  234 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESS-----CSCSSEECCCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred             eEEEEEECCCCccccCCceeEEE-----ecCCCcccCceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence            5899999987      4433221     023345667888875 5556655533        379999987222   233


Q ss_pred             EEeeccccceeEEEEecCCCEEEEeeCCC--cEEEEeCCCCeeeEEEEeecCCCC----CCcEEEEEEccCCCEEEEEEe
Q 024451          132 RTFHGHEGDVNTVKFFPDGNRFGTGSDDG--TCRLFDIRTGHQLQVYYQQHGENE----IPHVTSIAFSISGRLLFAGYS  205 (267)
Q Consensus       132 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~g~~  205 (267)
                      ....+|...+..+.|+|+|++++++..|+  .|.+||+.+++... +...+....    ...+..++|++++.+++++..
T Consensus       235 ~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~  313 (662)
T 3azo_A          235 TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ-LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK  313 (662)
T ss_dssp             EEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE-SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred             EeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee-cccccccccCccccccCceEeEeCCCEEEEEEEc
Confidence            33344567899999999999888888888  56666665554322 111111000    011457889999999999988


Q ss_pred             CCeEEEE--eCCccceeeecccccCCccceEEEE-EECCCCCeEEEeECCCcEEEEec
Q 024451          206 NGDCYVW--DTLLAKVVLNLGSLQNSHEGRITCL-GLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       206 dg~i~i~--d~~~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                       +.++||  |...++ +..+    ..|.+.+..+ +++++.-++++++.+....+|.+
T Consensus       314 -~~~~l~~~d~~~~~-~~~l----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          314 -GAAVLGILDPESGE-LVDA----AGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             -SSCEEEEEETTTTE-EEEC----CSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             -CccEEEEEECCCCc-EEEe----cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence             988888  554443 2222    3456667766 55544445556677766677754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.65  E-value=6.8e-15  Score=121.43  Aligned_cols=234  Identities=12%  Similarity=0.016  Sum_probs=140.9

Q ss_pred             ceeeCCCCCeEEEccCC---CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451            2 TCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      ..+|+|+|++|+.+..+   ..+.+||+....       ......++......+.|+|++ +.|+.++.++.|++||+.+
T Consensus        40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-------~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~  111 (396)
T 3c5m_A           40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-------AVQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLET  111 (396)
T ss_dssp             SCCBCTTSCEEEEEECTTSSCEEEEEETTTTE-------EEECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTT
T ss_pred             cCcCCCCCCEEEEEEecCCCceEEEEECCCCc-------EEEeecCCCCccccceECCCC-CEEEEEEcCCcEEEEECCC
Confidence            35799999998776543   367777765421       122222232223336789976 4788888888999999988


Q ss_pred             CeeEEEeCCccccCCccceE---EE----------------EEeCCCCeEEEEe-----cCCCeEEEEeCCCcccceEEe
Q 024451           79 GLRTSVFGGEFQSGHTADVL---SV----------------SISGSNSRMFVSG-----SCDSTARLWDTRVASRAVRTF  134 (267)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~i~---~~----------------~~~~~~~~~~~s~-----~~d~~i~iwd~~~~~~~~~~~  134 (267)
                      +........     +.....   .+                .++|. ++.++..     ..+..|.+||+....  ...+
T Consensus       112 ~~~~~~~~~-----~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd-g~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~~  183 (396)
T 3c5m_A          112 LEEQVIYTV-----DEEWKGYGTWVANSDCTKLVGIEILKRDWQPL-TSWEKFAEFYHTNPTCRLIKVDIETGE--LEVI  183 (396)
T ss_dssp             CCEEEEEEC-----CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC-CSHHHHHHHHHTCCCEEEEEEETTTCC--EEEE
T ss_pred             CCcEEEEec-----ccccCCCCCEEEeccCCccccccccccccCCC-CcceeeeeeccCCCcceEEEEECCCCc--EEee
Confidence            765444321     111111   11                12322 2222221     355689999986432  3333


Q ss_pred             eccccceeEEEEec-CCCEEEEeeCC------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-
Q 024451          135 HGHEGDVNTVKFFP-DGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-  206 (267)
Q Consensus       135 ~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-  206 (267)
                      ..+...+..+.|+| +++.++..+.+      ..|.+||+..++.. .+.. .  .....+..+.|+|+|+.|+..+.+ 
T Consensus       184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~-~--~~~~~~~~~~~spdg~~l~~~~~~~  259 (396)
T 3c5m_A          184 HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKE-H--AEGESCTHEFWIPDGSAMAYVSYFK  259 (396)
T ss_dssp             EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSC-C--CTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-Eeec-c--CCCccccceEECCCCCEEEEEecCC
Confidence            35666788999999 78877665543      46888888655422 1111 1  011247788999999987776554 


Q ss_pred             ----CeEEEEeCCccceeeecccccCCccceEEEEEECC-CCCeEEEeE----------------CCCcEEEEecCc
Q 024451          207 ----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGS----------------WDTNLKIWAFGG  262 (267)
Q Consensus       207 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs----------------~dg~i~~w~~~~  262 (267)
                          +.|++||+..++..... .    ..+ .. +.|+| +|++++.++                .+..|.+|++.+
T Consensus       260 ~~~~~~l~~~d~~~g~~~~l~-~----~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          260 GQTDRVIYKANPETLENEEVM-V----MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA  329 (396)
T ss_dssp             TTCCEEEEEECTTTCCEEEEE-E----CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred             CCccceEEEEECCCCCeEEee-e----CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence                44999998765532211 1    111 22 88999 999988765                246789998643

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.64  E-value=1.7e-13  Score=121.98  Aligned_cols=240  Identities=11%  Similarity=0.014  Sum_probs=151.7

Q ss_pred             ceeeCCCCCeEEEccCCC-----eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe------
Q 024451            2 TCAFSPTGQSVACGGLDS-----VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT------   70 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~-----~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~------   70 (267)
                      ..+|+|||++|+.+..++     +|++||+....       ..... .....+..++|+|++. .|+.++.++.      
T Consensus       129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~-------~~~~~-~~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK-------ELPDV-LERVKFSCMAWTHDGK-GMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE-------EEEEE-EEEECSCCEEECTTSS-EEEEEECCCCSSCCSS
T ss_pred             EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-------CCccc-ccCcccceEEEEeCCC-EEEEEEECCccccccc
Confidence            357999999998765543     89999986532       11111 1122356789999875 5666666655      


Q ss_pred             ----------EEEEeCCCCee--EEEeCCccccCCccceEEEEEeCCCCeEEEEecC-----CCeEEEEeCCC------c
Q 024451           71 ----------CVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----DSTARLWDTRV------A  127 (267)
Q Consensus        71 ----------v~iwd~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-----d~~i~iwd~~~------~  127 (267)
                                |++|++.++..  ..++..   ..+...+..+.+++.+ +.++..+.     +..|.+||+..      .
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~---~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  275 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDILCAEF---PDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECC---TTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             cccccCCCCEEEEEECCCCcccceEEecc---CCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCC
Confidence                      99999987652  222221   1244456788898755 44444332     56899999864      2


Q ss_pred             ccceEEeeccccceeEEEEecCCCEEEEeeCC----CcEEEEeCCCCee--eEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451          128 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD----GTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLF  201 (267)
Q Consensus       128 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  201 (267)
                      ......+..+...+.. .|+|+|+.|+..+.+    ..|.+||+.+++.  ...+..+.   ....+..++|++++.+++
T Consensus       276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~lv~  351 (710)
T 2xdw_A          276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH---EKDVLEWVACVRSNFLVL  351 (710)
T ss_dssp             SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCEEEEEEEETTTEEEE
T ss_pred             ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC---CCCeEEEEEEEcCCEEEE
Confidence            2234555556555544 588888887766543    3699999987642  22232221   112477888887777888


Q ss_pred             EEEeCC--eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEe-E---CCCcEEEEecCc
Q 024451          202 AGYSNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG-S---WDTNLKIWAFGG  262 (267)
Q Consensus       202 ~g~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg-s---~dg~i~~w~~~~  262 (267)
                      +...++  .|++||...++....+    ..+.+.+..++++|+++.++.. +   ..+++.+|++..
T Consensus       352 ~~~~~g~~~l~~~~~~~g~~~~~l----~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          352 CYLHDVKNTLQLHDLATGALLKIF----PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEE----CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred             EEEECCEEEEEEEECCCCCEEEec----CCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            888887  4666776555543333    2346678899999998766532 2   356788888743

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.63  E-value=7.1e-13  Score=107.15  Aligned_cols=234  Identities=9%  Similarity=-0.008  Sum_probs=153.4

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG   87 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   87 (267)
                      +++++++...+++|.+||.....       ....+. .......+++++++ ...++...++.|.+||..++.....+..
T Consensus        53 ~~~lyv~~~~~~~v~viD~~t~~-------~~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~  123 (328)
T 3dsm_A           53 DGIGWIVVNNSHVIFAIDINTFK-------EVGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIEC  123 (328)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTCC-------EEEEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEEcCCCEEEEEECcccE-------EEEEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence            45667777778999999986421       223332 23456778888865 5555554899999999998876544432


Q ss_pred             ccccCCccceEEEEEeCCCCeEEEEec-CCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC-------
Q 024451           88 EFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-------  159 (267)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------  159 (267)
                      ....+.......+++  .+++++++.. .++.|.++|.... +....+.. ......+.++|+|++++++..+       
T Consensus       124 g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~-~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~  199 (328)
T 3dsm_A          124 PDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD-KVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYG  199 (328)
T ss_dssp             TTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT-EEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred             CCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC-eEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccc
Confidence            110111113344555  3566666654 4889999998753 33444432 2345788999999988777654       


Q ss_pred             ---CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451          160 ---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  236 (267)
Q Consensus       160 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  236 (267)
                         +.|.++|..+++....+....    ......++|+|+++.+.+...  .|++||..+.+... .... ..+......
T Consensus       200 ~~~~~v~~id~~t~~v~~~~~~~~----g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~-~~~~-~~~~~~p~g  271 (328)
T 3dsm_A          200 YEAPSLYRIDAETFTVEKQFKFKL----GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV-RPFL-EFRDTKYYG  271 (328)
T ss_dssp             BCCCEEEEEETTTTEEEEEEECCT----TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS-SCSB-CCCSSCEEE
T ss_pred             cCCceEEEEECCCCeEEEEEecCC----CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee-eeee-cCCCCceEE
Confidence               789999998877554432111    124689999999999888654  89999987766431 1111 112356788


Q ss_pred             EEECC-CCCeEEEe----ECCCcEEEEecCc
Q 024451          237 LGLSA-DGSALCTG----SWDTNLKIWAFGG  262 (267)
Q Consensus       237 ~~~~p-~~~~l~sg----s~dg~i~~w~~~~  262 (267)
                      ++++| +++++++.    ..++.|.+|+..+
T Consensus       272 i~vdp~~g~lyva~~~~y~~~~~V~v~d~~g  302 (328)
T 3dsm_A          272 LTVNPNNGEVYVADAIDYQQQGIVYRYSPQG  302 (328)
T ss_dssp             EEECTTTCCEEEEECTTSSSEEEEEEECTTC
T ss_pred             EEEcCCCCeEEEEcccccccCCEEEEECCCC
Confidence            99999 56666666    5789999998764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.63  E-value=4e-13  Score=108.52  Aligned_cols=236  Identities=12%  Similarity=0.012  Sum_probs=157.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|++++..++..+.++.++.|...          ....+.++...+.+++|.|++ .+++++..++.|.+||.+++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~   78 (333)
T 2dg1_A           10 TLFYSGKSNSAVPIISESELQTITAE----------PWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEI   78 (333)
T ss_dssp             BCCSCGGGGCSSCCCCGGGSCEEECE----------EEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCE
T ss_pred             eeeecCCccceeEEeecccCcccccc----------eeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcE
Confidence            56789988888888889999999321          223344565667889999875 4666788899999999987764


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC----CeEEEEeCCCcccceEEee--ccccceeEEEEecCCCEEEE
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----STARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGT  155 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d----~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~  155 (267)
                      .....     .+...+..+++++. ++++++...+    +.|.+||..... ....+.  .+...+..+.++|+++.+++
T Consensus        79 ~~~~~-----~~~~~~~~i~~~~d-g~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~l~v~  151 (333)
T 2dg1_A           79 KRPFV-----SHKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDSKGGFYFT  151 (333)
T ss_dssp             EEEEE-----CSSSSEEEEEECTT-SCEEEEECTTSSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECTTSCEEEE
T ss_pred             EEEee-----CCCCCcceEEECCC-CcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEccCccCCcccceEECCCCCEEEE
Confidence            43321     23456888988864 5677766655    689999976432 221222  23456889999999988876


Q ss_pred             eeC------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE-EEeCCeEEEEeCCc-cceeeecc---
Q 024451          156 GSD------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLL-AKVVLNLG---  224 (267)
Q Consensus       156 ~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-g~~dg~i~i~d~~~-~~~~~~~~---  224 (267)
                      ...      .+.|..+|..+++.. .+...     ...+..++|+|+++.++. ...++.|++||... ++....+.   
T Consensus       152 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~-----~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~  225 (333)
T 2dg1_A          152 DFRGYSTNPLGGVYYVSPDFRTVT-PIIQN-----ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI  225 (333)
T ss_dssp             ECCCBTTBCCEEEEEECTTSCCEE-EEEEE-----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred             eccccccCCCceEEEEeCCCCEEE-EeecC-----CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence            654      245666665544332 22211     123688999999986654 45678999999753 22111100   


Q ss_pred             -cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          225 -SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       225 -~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                       .....+ ..+..++++++|+++++...++.|.+|+..+
T Consensus       226 ~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g  263 (333)
T 2dg1_A          226 PYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  263 (333)
T ss_dssp             EEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             EEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCC
Confidence             000112 3678899999999988888889999998754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.63  E-value=2.5e-13  Score=110.25  Aligned_cols=219  Identities=11%  Similarity=0.117  Sum_probs=135.7

Q ss_pred             ceeeCCCCCeEEEccCC---Ce--EEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC---------
Q 024451            2 TCAFSPTGQSVACGGLD---SV--CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---------   67 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d---~~--v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---------   67 (267)
                      ..+|+|||+.|+.++.+   +.  |.+|++...       .... +..+.. +..+.|+|++. .|+.++.         
T Consensus        63 ~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g-------~~~~-l~~~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~  132 (347)
T 2gop_A           63 MPRISPDGKKIAFMRANEEKKVSEIWVADLETL-------SSKK-ILEAKN-IRSLEWNEDSR-KLLIVGFKRREDEDFI  132 (347)
T ss_dssp             EEEECTTSSEEEEEEEETTTTEEEEEEEETTTT-------EEEE-EEEESE-EEEEEECTTSS-EEEEEEECCCC-----
T ss_pred             CeEECCCCCEEEEEEeccCCCcceEEEEECCCC-------ceEE-EEcCCC-ccceeECCCCC-EEEEEEccCCCcCCcE
Confidence            36899999999987754   34  556665431       1222 222233 88999999875 4555442         


Q ss_pred             ------------------CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-------eEEEE
Q 024451           68 ------------------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-------TARLW  122 (267)
Q Consensus        68 ------------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-------~i~iw  122 (267)
                                        ...|.+||+.++.....+.     . . .+..+.|++. + +++++..+.       ...+|
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~-----~-~-~~~~~~~spd-g-~~~~~~~~~~~~~~~~~~~l~  203 (347)
T 2gop_A          133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE-----K-P-RFSSGIWHRD-K-IVVNVPHREIIPQYFKFWDIY  203 (347)
T ss_dssp             ----CCCC---------CEEEEEEEETTTTEEEEEEE-----E-E-TTCEEEEETT-E-EEEEEECCCSSCCSSCCEEEE
T ss_pred             EEcccceeecCcccccCccceEEEEECCCCeEEeeec-----C-C-CcccccCCCC-e-EEEEEecccccccccccccEE
Confidence                              2578999998876523321     1 1 4667888864 4 666665432       34455


Q ss_pred             eCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC--------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEE-EEE
Q 024451          123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD--------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTS-IAF  193 (267)
Q Consensus       123 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~  193 (267)
                      .+. ... ...+..+ ..+..+  +|+|+.++..+.+        ..|.+||  +++.. .+.    ......+.. +.|
T Consensus       204 ~~d-~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~----~~~~~~~~~~~~~  271 (347)
T 2gop_A          204 IWE-DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GIL----DEVDRGVGQAKIK  271 (347)
T ss_dssp             EEE-TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESS----TTCCSEEEEEEEE
T ss_pred             EeC-CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-ecc----ccCCcccCCccEE
Confidence            443 222 3334334 444444  8999988877754        3677777  44322 111    112235665 889


Q ss_pred             ccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcE-EEEecC
Q 024451          194 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL-KIWAFG  261 (267)
Q Consensus       194 s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i-~~w~~~  261 (267)
                      + ++ +++++..++.++|| +..++.. ..    ..+.+.|.+++|+|  .++++++.++.. .||.+.
T Consensus       272 s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~----~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          272 D-GK-VYFTLFEEGSVNLY-IWDGEIK-PI----AKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             T-TE-EEEEEEETTEEEEE-EESSSEE-EE----ECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             c-Cc-EEEEEecCCcEEEE-EcCCceE-EE----ecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            9 88 88899999999999 7633322 11    13467899999999  677777777765 788653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.63  E-value=2.5e-12  Score=102.82  Aligned_cols=243  Identities=9%  Similarity=0.086  Sum_probs=151.7

Q ss_pred             ceeeCCCCCeEEE-------ccCCCeEEEeecCCCCCCCCCCcccc--cccCCeeeEEEEEEecCCCeeEEEeeCCCeEE
Q 024451            2 TCAFSPTGQSVAC-------GGLDSVCSIFNLNSPTDKDGNLPVSR--MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV   72 (267)
Q Consensus         2 ~~~~~~~g~~l~~-------~~~d~~v~~w~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~   72 (267)
                      .++|+++|+++++       ...++.|.+||.....     .....  ...++...+..+.+.++++.+++ ++.++.|.
T Consensus        22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~   95 (314)
T 1pjx_A           22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-----KTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLL   95 (314)
T ss_dssp             EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-----EEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEE
T ss_pred             CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc-----EEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEE
Confidence            4678999998888       6788999999864321     11000  01235567889999886334344 44445788


Q ss_pred             EEeCCCCeeEEE-eCCccccCCccceEEEEEeCCCCeEEEEecCC---------------CeEEEEeCCCcccceEEeec
Q 024451           73 LWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---------------STARLWDTRVASRAVRTFHG  136 (267)
Q Consensus        73 iwd~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d---------------~~i~iwd~~~~~~~~~~~~~  136 (267)
                      +||.+ +..... .. .........+..+.+++ +++++++...+               +.|..++..  .. ...+..
T Consensus        96 ~~d~~-g~~~~~~~~-~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~~~  169 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKK-DSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQ-MIQVDT  169 (314)
T ss_dssp             EEETT-SCEEECCSB-CTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SC-EEEEEE
T ss_pred             EEeCC-CCEEEEEec-cCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC--CC-EEEecc
Confidence            99988 544322 21 11111223467888886 45666666544               567777754  22 222333


Q ss_pred             cccceeEEEEe----cCCCEEE-EeeCCCcEEEEeCC-CCeeeEE-EEeecCCCCC-CcEEEEEEccCCCEEEEEEeCCe
Q 024451          137 HEGDVNTVKFF----PDGNRFG-TGSDDGTCRLFDIR-TGHQLQV-YYQQHGENEI-PHVTSIAFSISGRLLFAGYSNGD  208 (267)
Q Consensus       137 ~~~~i~~~~~~----~~~~~l~-~~~~d~~i~iwd~~-~~~~~~~-~~~~~~~~~~-~~v~~~~~s~~~~~l~~g~~dg~  208 (267)
                      +......++++    |+++.+. +...++.|.+||.+ +++.... ..... .... ..+..++++++|++.++...++.
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI-PGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC-CCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC-CCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence            34456789999    9986554 44568899999986 3432111 11111 1111 34688999999998888888899


Q ss_pred             EEEEeCCccceeeecccccCCccceEEEEEECCCCCeEE-EeECCCcEEEEecC
Q 024451          209 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC-TGSWDTNLKIWAFG  261 (267)
Q Consensus       209 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-sgs~dg~i~~w~~~  261 (267)
                      |..||..+++.....    ..+...+.+++|+|+|+.|. +...++.|..|+..
T Consensus       249 i~~~d~~~g~~~~~~----~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          249 IEVFGPDGGQPKMRI----RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEECTTCBSCSEEE----ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEEcCCCCcEeEEE----eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            999998755543322    12345789999999999554 44556788888764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.63  E-value=5.4e-13  Score=105.17  Aligned_cols=219  Identities=11%  Similarity=-0.014  Sum_probs=151.1

Q ss_pred             CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe-eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451            7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF   85 (267)
Q Consensus         7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~   85 (267)
                      ..++.|++++.|+.|.+||.+..       +....+..+. ..++++.+.|++ ++++  +.++.|..||. +++.+..+
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG-------~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~   71 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTK-------EIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNI   71 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTT-------EEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCC-------eEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEE
Confidence            34788999999999999997442       1334444443 457788899976 4566  45788999999 67766655


Q ss_pred             CCccccCCccceEEEEEeCCCCeEEEEecC-CCeEEEEeCCCcccceEEee------ccccceeEEEEecCCCEEEEeeC
Q 024451           86 GGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSD  158 (267)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~  158 (267)
                      ..    +....+.++.+.+ +++++++.+. ++.+..+|..  .+.+..+.      .+......+.+.++|+++++...
T Consensus        72 ~~----~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~  144 (276)
T 3no2_A           72 AA----PAGCEMQTARILP-DGNALVAWCGHPSTILEVNMK--GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA  144 (276)
T ss_dssp             EC----CTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTT--SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT
T ss_pred             cC----CCCccccccEECC-CCCEEEEecCCCCEEEEEeCC--CCEEEEEeccCCCCcccccccCceECCCCCEEEEecC
Confidence            42    2223566777765 5667777665 6777777753  33333332      11123456678899999999999


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccc--cCCccceEEE
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL--QNSHEGRITC  236 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~v~~  236 (267)
                      ++.|..||.+ ++.+..+...      ..+.++...++++.++++..++.|..+|..+++.+..+...  .......+..
T Consensus       145 ~~~v~~~d~~-G~~~w~~~~~------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~  217 (276)
T 3no2_A          145 TSEVREIAPN-GQLLNSVKLS------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQ  217 (276)
T ss_dssp             TTEEEEECTT-SCEEEEEECS------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEE
T ss_pred             CCEEEEECCC-CCEEEEEECC------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccccc
Confidence            9999999987 8776554321      12455677899999999988889999999888887665321  1111234788


Q ss_pred             EEECCCCCeEEEeE
Q 024451          237 LGLSADGSALCTGS  250 (267)
Q Consensus       237 ~~~~p~~~~l~sgs  250 (267)
                      ++..++|+++++.+
T Consensus       218 ~~~~~~G~i~v~~~  231 (276)
T 3no2_A          218 LFPLQNGGLYICNW  231 (276)
T ss_dssp             EEECTTSCEEEEEE
T ss_pred             ceEcCCCCEEEEec
Confidence            88999999988764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.60  E-value=1e-12  Score=106.21  Aligned_cols=207  Identities=15%  Similarity=0.134  Sum_probs=141.7

Q ss_pred             eeeEEEEEEecCCCeeEEEeeCC------------------------CeEEEEeCCCCeeEEEeCCccccCCccceEEEE
Q 024451           46 KGYVSCCQYVPDEDTHLITSSGD------------------------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS  101 (267)
Q Consensus        46 ~~~v~~~~~~~~~~~~l~s~~~d------------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~  101 (267)
                      -+.+.++++.|++ +++++.+.+                        ++|.+||..++.....+.    .++-.....++
T Consensus        23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~----~~~~~~p~gia   97 (329)
T 3fvz_A           23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG----KNLFYLPHGLS   97 (329)
T ss_dssp             CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC----TTTCSSEEEEE
T ss_pred             cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC----CCccCCceEEE
Confidence            4668899999976 466666666                        479999998877654442    23344577888


Q ss_pred             EeCCCCeEEEEecCCCeEEEEeCCCcccceEEe---------eccccceeEEEEec-CCCEEEEee-CCCcEEEEeCCCC
Q 024451          102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---------HGHEGDVNTVKFFP-DGNRFGTGS-DDGTCRLFDIRTG  170 (267)
Q Consensus       102 ~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~i~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~  170 (267)
                      +++ +++++++...++.|++|+.......+..+         .++......++++| +++.+++.+ .++.|++||. ++
T Consensus        98 ~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g  175 (329)
T 3fvz_A           98 IDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SG  175 (329)
T ss_dssp             ECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TS
T ss_pred             ECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CC
Confidence            885 55688888889999999975321133333         23334578999999 788888886 6999999994 45


Q ss_pred             eeeEEEEeecC-----CCCCCcEEEEEEccC-CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC---
Q 024451          171 HQLQVYYQQHG-----ENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA---  241 (267)
Q Consensus       171 ~~~~~~~~~~~-----~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p---  241 (267)
                      +.+..+.....     .........++++|+ +.++++...++.|++||..+++.+..+..  ..+...+..++++|   
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~pg~~  253 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH--ASFGRNVFAISYIPGFL  253 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC--TTTTTCEEEEEEETTEE
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec--cccCCCcceeeecCCEE
Confidence            54443322111     011234789999998 77777777889999999876666554422  23556788999999   


Q ss_pred             ---CCCeEEEeECCCcEEEEecC
Q 024451          242 ---DGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       242 ---~~~~l~sgs~dg~i~~w~~~  261 (267)
                         +|+..++.+.+..|++|++.
T Consensus       254 ~~~~g~~~v~~~~~~~v~~~~~~  276 (329)
T 3fvz_A          254 FAVNGKPYFGDQEPVQGFVMNFS  276 (329)
T ss_dssp             EEEECCCCTTCSCCCCEEEEETT
T ss_pred             EEeCCCEEeccCCCcEEEEEEcC
Confidence               44444444445689999853

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.59  E-value=3.4e-11  Score=95.33  Aligned_cols=237  Identities=9%  Similarity=0.017  Sum_probs=158.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++++++|+++++...++.|.+||.. ..     .. ......+...+.++.+.+++ .+.++...++.|..||......
T Consensus        19 ~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-----~~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~~   90 (299)
T 2z2n_A           19 GITVSDKGKVWITQHKANMISCINLD-GK-----IT-EYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKKGIIK   90 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-CC-----EE-EEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSCEE
T ss_pred             ceEECCCCCEEEEecCCCcEEEEcCC-CC-----eE-EecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCCCcEE
Confidence            46788999988887778899999865 11     11 11112244668889998865 4555556678899999863322


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                        .+..   ......+..+.+.+ +++++++...++.|..||.. ..........+...+..+.+.++++..++...++.
T Consensus        91 --~~~~---~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~  163 (299)
T 2z2n_A           91 --EYTL---PNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITDD-GKIREYELPNKGSYPSFITLGSDNALWFTENQNNA  163 (299)
T ss_dssp             --EEEC---SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred             --EEeC---CCcCCCceeeEECC-CCCEEEEecCCceEEEECCC-CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence              2211   11334577888875 46777777778899999873 22211122223456889999999988887777889


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      |..||. +++... +..   ......+..+++++++.+.++...++.|..||. .++... .. . ..+...+.+++++|
T Consensus       164 i~~~~~-~g~~~~-~~~---~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~-~-~~~~~~~~~i~~~~  234 (299)
T 2z2n_A          164 IGRITE-SGDITE-FKI---PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FK-I-PTPNARPHAITAGA  234 (299)
T ss_dssp             EEEECT-TCCEEE-EEC---SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EE-C-SSTTCCEEEEEECS
T ss_pred             EEEEcC-CCcEEE-eeC---CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EE-C-CCCCCCceeEEECC
Confidence            999998 554332 211   112235789999999998777767889999998 444321 11 1 22445688999999


Q ss_pred             CCCeEEEeECCCcEEEEecCc
Q 024451          242 DGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +|+++++...++.|..|+..+
T Consensus       235 ~g~l~v~~~~~~~i~~~d~~g  255 (299)
T 2z2n_A          235 GIDLWFTEWGANKIGRLTSNN  255 (299)
T ss_dssp             TTCEEEEETTTTEEEEEETTT
T ss_pred             CCCEEEeccCCceEEEECCCC
Confidence            999777665778899998654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.58  E-value=6.6e-13  Score=117.94  Aligned_cols=238  Identities=14%  Similarity=0.055  Sum_probs=147.7

Q ss_pred             ceeeCCCCCeEE-----EccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe------
Q 024451            2 TCAFSPTGQSVA-----CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT------   70 (267)
Q Consensus         2 ~~~~~~~g~~l~-----~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~------   70 (267)
                      ..+|+|||++|+     .|+.+.+|++||+......     ....+.+.+  ...+.|+|++. .|+.++.|..      
T Consensus       125 ~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~-----~~~~~~~~~--~~~~~wspDg~-~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          125 TWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS-----KVDVIEGGK--YATPKWTPDSK-GFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC-----SSCCBSCCT--TCCCEECTTSS-EEEEEECCCCTTSCGG
T ss_pred             EEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc-----CCcccCccc--ccceEEecCCC-EEEEEEecCCCCCccc
Confidence            357999999999     6777889999998753211     011111111  15688999875 6777777765      


Q ss_pred             -------EEEEeCCCCee--EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC----eEEEEeCCCcccceEEeecc
Q 024451           71 -------CVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS----TARLWDTRVASRAVRTFHGH  137 (267)
Q Consensus        71 -------v~iwd~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~----~i~iwd~~~~~~~~~~~~~~  137 (267)
                             |++|++.++..  ..++..   ..+...+..+.+++.+. .++..+.++    .|.+|+...  .....+..+
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~---~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~--~~~~~l~~~  270 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHER---TGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGE--KDFRLLVKG  270 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECC---CCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTC--SSCEEEEEC
T ss_pred             cCCCCCEEEEEECCCCchhceEEEec---CCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCC--CceEEeecC
Confidence                   99999988752  233321   23445677888987654 444444443    566666532  234455556


Q ss_pred             ccceeEEEEecCCCEEEEeeC----CCcEEEEeCCCCee--eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEE
Q 024451          138 EGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV  211 (267)
Q Consensus       138 ~~~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i  211 (267)
                      ...+....+ ++++ ++..+.    ++.|.+||+.+++.  ...+....   ....+..++|+ ++.++++...|+..++
T Consensus       271 ~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~l~~~~~~-~~~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          271 VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED---SSASLLSVSIV-GGHLSLEYLKDATSEV  344 (695)
T ss_dssp             SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC---SSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred             CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC---CCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence            556666666 5666 544443    57899999977642  12222211   12346778887 6778888888988777


Q ss_pred             EeCC-ccceeeecccccCCccceEEEEEECCCCCeEE----EeECCCcEEEEecCc
Q 024451          212 WDTL-LAKVVLNLGSLQNSHEGRITCLGLSADGSALC----TGSWDTNLKIWAFGG  262 (267)
Q Consensus       212 ~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~----sgs~dg~i~~w~~~~  262 (267)
                      |... .++....+   ...+.+.+..++++|+++.++    +....++|.+|++.+
T Consensus       345 ~~~~~~g~~~~~l---~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          345 RVATLKGKPVRTV---QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             EEEETTCCEEEEC---CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             EEEeCCCCeeEEe---cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            7543 23322222   122356788889999998776    333357899998754

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.55  E-value=3.1e-11  Score=104.22  Aligned_cols=249  Identities=9%  Similarity=-0.003  Sum_probs=157.7

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEe----cCCCeeEEEeeCCCeEEEEeCCC
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV----PDEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      +.|+|||+++.+++.|+.|.+||+...+     ......+..... ...+.|+    |++...+++...+++|.++|..+
T Consensus       202 v~~SpDGr~lyv~~~dg~V~viD~~~~t-----~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          202 SRLSASGRYLFVIGRDGKVNMIDLWMKE-----PTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEETTSSS-----CCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             eEECCCCCEEEEEcCCCeEEEEECCCCC-----CcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            5799999999999999999999984111     112333333222 4578899    57665555556679999999998


Q ss_pred             CeeEEEeCCccc-----cCC-ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-eEEeeccccceeEEEEecCCC
Q 024451           79 GLRTSVFGGEFQ-----SGH-TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGN  151 (267)
Q Consensus        79 ~~~~~~~~~~~~-----~~~-~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~  151 (267)
                      .+.+..+.....     ..| ...+..+..++.....+++...+|.|.++|....... +..+ ......+.+.|+|+++
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr  354 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHR  354 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSC
T ss_pred             CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCC
Confidence            877665542110     012 2256677777665666777778899999997643211 2222 2234567889999999


Q ss_pred             EEEEee-CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE-EEEE-eCCeEEEEeCCc-------cceee
Q 024451          152 RFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGY-SNGDCYVWDTLL-------AKVVL  221 (267)
Q Consensus       152 ~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~g~-~dg~i~i~d~~~-------~~~~~  221 (267)
                      +++++. .+++|.++|+.+++....+.......+...-..+ ++|++..+ +++. .++.|.++|...       .+.+.
T Consensus       355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~  433 (567)
T 1qks_A          355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD  433 (567)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred             EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence            886655 6789999999998766544220111111111122 57875444 4443 468999999876       34443


Q ss_pred             ecccccCCccceEEEEEECCCCCeEEEeEC-------CCcEEEEecCce
Q 024451          222 NLGSLQNSHEGRITCLGLSADGSALCTGSW-------DTNLKIWAFGGY  263 (267)
Q Consensus       222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-------dg~i~~w~~~~~  263 (267)
                      .+.   ....+. ..++++|++++|.....       .++|.++|+..+
T Consensus       434 ~i~---~~g~g~-~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          434 SFP---ALGGGS-LFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEE---CSCSCC-CCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EEe---cCCCCC-EEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            331   111121 33778999999887553       359999998766

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.54  E-value=8.6e-12  Score=101.14  Aligned_cols=211  Identities=11%  Similarity=0.129  Sum_probs=133.6

Q ss_pred             CCCeEEEcc---------CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC---C--eEEE
Q 024451            8 TGQSVACGG---------LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---Q--TCVL   73 (267)
Q Consensus         8 ~g~~l~~~~---------~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~--~v~i   73 (267)
                      ||+.++...         .++.|.+|++....       . +.+    ..+..+.|+|++. +|+.++.+   +  .|.+
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~-------~-~~l----~~~~~~~~SpDg~-~la~~~~~~~~~~~~l~~   89 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNNA-------R-RFI----ENATMPRISPDGK-KIAFMRANEEKKVSEIWV   89 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC-------E-EEE----ESCEEEEECTTSS-EEEEEEEETTTTEEEEEE
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCCc-------e-EEc----ccCCCeEECCCCC-EEEEEEeccCCCcceEEE
Confidence            787777642         36778888876421       1 122    4578899999875 56655433   3  4778


Q ss_pred             EeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC---------------------------CCeEEEEeCCC
Q 024451           74 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---------------------------DSTARLWDTRV  126 (267)
Q Consensus        74 wd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~---------------------------d~~i~iwd~~~  126 (267)
                      ||+.++.......      +.. +..+.|+|.+. .++.++.                           ...|.+||+..
T Consensus        90 ~~~~~g~~~~l~~------~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~  161 (347)
T 2gop_A           90 ADLETLSSKKILE------AKN-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES  161 (347)
T ss_dssp             EETTTTEEEEEEE------ESE-EEEEEECTTSS-EEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred             EECCCCceEEEEc------CCC-ccceeECCCCC-EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence            8888776544432      123 78889987554 4444432                           25688999864


Q ss_pred             cccceEEeeccccceeEEEEecCCCEEEEeeCCC-------cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451          127 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  199 (267)
Q Consensus       127 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  199 (267)
                      . .....+.. . .+..+.|+|+| .++++..+.       ...+|.+++++. ..+...      ..+..+  +|+|+.
T Consensus       162 ~-~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~------~~~~~~--spdg~~  228 (347)
T 2gop_A          162 E-EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK------VSFYAV--DSDGER  228 (347)
T ss_dssp             T-EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE------ESEEEE--EECSSC
T ss_pred             C-eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC------cceeeE--CCCCCE
Confidence            3 23244443 3 78899999999 777776542       445555544433 333221      123443  899998


Q ss_pred             EEEEEeC--------CeEEEEeCCccceeeecccccCCccceEEE-EEECCCCCeEEEeECCCcEEEEecC
Q 024451          200 LFAGYSN--------GDCYVWDTLLAKVVLNLGSLQNSHEGRITC-LGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       200 l~~g~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      |+.++.+        ..|++||  .++.. .+   ...+...+.. +.|+ ++ ++++++.|+.++|| +.
T Consensus       229 l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l---~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          229 ILLYGKPEKKYMSEHNKLYIYD--GKEVM-GI---LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             EEEEECCSSSCCCSSCEEEEEC--SSCEE-ES---STTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             EEEEEccccCCccccceEEEEC--CCceE-ec---cccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            8877643        4788888  33322 11   1345667886 9999 88 99999999999999 74

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.51  E-value=2e-10  Score=90.81  Aligned_cols=234  Identities=5%  Similarity=-0.077  Sum_probs=151.6

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .++++++|+++++...++.|..|+...      .... ..+......+..+.+.|++ .+.++...++.|..||. ++..
T Consensus        61 ~i~~~~~g~l~v~~~~~~~i~~~~~~g------~~~~-~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~  131 (299)
T 2z2n_A           61 CLTISSDGEVWFTENAANKIGRITKKG------IIKE-YTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKI  131 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTS------CEEE-EECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCE
T ss_pred             eEEECCCCCEEEeCCCCCeEEEECCCC------cEEE-EeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCE
Confidence            467889999888888788899998642      1111 1122234567888888865 45666666889999998 4433


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      .....    ......+..+++.+ +++++++...++.|..||. ...........+...+..+.++++++..++...++.
T Consensus       132 ~~~~~----~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~  205 (299)
T 2z2n_A          132 REYEL----PNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK  205 (299)
T ss_dssp             EEEEC----SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             EEecC----CCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce
Confidence            22211    11234567888875 4577777777789999987 322111112233456789999999998777777889


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      |.+||. +++.. .+..   ......+..++++++|+..++...++.|..||.. ++ +.... . ..+...+.++++ +
T Consensus       206 i~~~~~-~g~~~-~~~~---~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~~-~-~~~~~~~~~i~~-~  275 (299)
T 2z2n_A          206 IGRITT-SGEIT-EFKI---PTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IEEYP-I-QIKSAEPHGICF-D  275 (299)
T ss_dssp             EEEECT-TCCEE-EEEC---SSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EEEEE-C-SSSSCCEEEEEE-C
T ss_pred             EEEECC-CCcEE-EEEC---CCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eEEEe-C-CCCCCccceEEe-c
Confidence            999998 55432 2211   1123457899999999977776678899999973 32 22221 1 233456889999 9


Q ss_pred             CCCeEEEeECCCcEEEEecC
Q 024451          242 DGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~~  261 (267)
                      +|+++++.+ .+.+..++..
T Consensus       276 ~g~l~v~~~-~~~l~~~~~~  294 (299)
T 2z2n_A          276 GETIWFAME-CDKIGKLTLI  294 (299)
T ss_dssp             SSCEEEEET-TTEEEEEEEC
T ss_pred             CCCEEEEec-CCcEEEEEcC
Confidence            998887655 4555555543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.51  E-value=1.5e-11  Score=100.76  Aligned_cols=220  Identities=11%  Similarity=0.070  Sum_probs=134.5

Q ss_pred             ceeeCCCCCeEEEccC--CCeEEEeecCCCCCCCCCCccccc-ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451            2 TCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      .++|+|+|++|+++..  +++|.+||+....       .... +. +.+ ...+.+.|.+...+++.+.|+.+.+|+...
T Consensus       112 ~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~-------~~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~  182 (361)
T 2oiz_A          112 LFRQTTDGKFIVLQNASPATSIGIVDVAKGD-------YVEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGE  182 (361)
T ss_dssp             GEEECTTSSEEEEEEESSSEEEEEEETTTTE-------EEEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred             eEEECCCCCEEEEECCCCCCeEEEEECCCCc-------EEEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence            3689999999988764  6899999986521       2222 21 111 122456776656788899999999998865


Q ss_pred             -CeeEEEeCC-ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-eEEee--c----cc----cceeEEE
Q 024451           79 -GLRTSVFGG-EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFH--G----HE----GDVNTVK  145 (267)
Q Consensus        79 -~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-~~~~~--~----~~----~~i~~~~  145 (267)
                       +........ .........+ .+...+.. ..++..+.++.+.++|+...... ...+.  .    +.    .....++
T Consensus       183 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a  260 (361)
T 2oiz_A          183 DGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVG  260 (361)
T ss_dssp             TSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEE
T ss_pred             CCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEE
Confidence             332211100 0000111111 11112222 23444567889999998532211 11111  0    00    1122378


Q ss_pred             EecCCCEEEEeeC-----------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451          146 FFPDGNRFGTGSD-----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  214 (267)
Q Consensus       146 ~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~  214 (267)
                      |+|+++.+.++..           .+.|.+||+.+++.+..+...      . +..++|+|+|++|+++.. +.|.+||.
T Consensus       261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~------~-p~~ia~spdg~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR------D-ALSMTIDQQRNLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT------T-CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred             EecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC------C-eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence            9999887766543           348999999998876654321      1 688999999999998876 99999999


Q ss_pred             Ccc--ceeeecccccCCccceEEEEEECCCCC
Q 024451          215 LLA--KVVLNLGSLQNSHEGRITCLGLSADGS  244 (267)
Q Consensus       215 ~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~  244 (267)
                      .++  +.+..+    ..+...-..++++|+|+
T Consensus       333 ~t~~l~~~~~i----~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          333 SQPEPKLLRTI----EGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SSSSCEEEEEE----TTSCSSEEEEEECCCSC
T ss_pred             CCCcceeeEEe----ccCCCCcEEEEecCCCC
Confidence            988  766543    12344557789999985

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.50  E-value=3.8e-10  Score=89.25  Aligned_cols=237  Identities=9%  Similarity=-0.009  Sum_probs=156.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++++.++|++.++...++.|.+||.. ..     ... ..+..+...+..+.+.+++ .+.++...++.|..||.. +..
T Consensus        24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-----~~~-~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           24 GITSSEDGKVWFTQHKANKISSLDQS-GR-----IKE-FEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SC-----EEE-EECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCE
T ss_pred             eeeECCCCCEEEEcCCCCeEEEECCC-Cc-----eEE-EECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC-CCe
Confidence            46788999999988888999999865 11     111 1122334567888888865 455555567889999987 433


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      .. +..   ......+..+.+.+ +++++++...++.|..++.. .......+......+..+.+.++++..++...++.
T Consensus        95 ~~-~~~---~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  168 (300)
T 2qc5_A           95 TE-YPL---PQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS  168 (300)
T ss_dssp             EE-EEC---SSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             EE-ecC---CCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence            22 211   11234577888875 56677777778889999875 32211122223456789999999997777767889


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      |..+|. +++... +..   ......+..+++++++.+.++....+.|..||. .++.....  . ..+...+.+++++|
T Consensus       169 i~~~~~-~g~~~~-~~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~--~-~~~~~~~~~i~~d~  239 (300)
T 2qc5_A          169 IGRITN-TGKLEE-YPL---PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD--I-PTPNARPHAITAGK  239 (300)
T ss_dssp             EEEECT-TCCEEE-EEC---SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE--C-SSTTCCEEEEEECS
T ss_pred             EEEECC-CCcEEE-eeC---CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE--C-CCCCCCceEEEECC
Confidence            999998 444332 211   122245789999999988777767788999997 33322211  1 12345678999999


Q ss_pred             CCCeEEEeECCCcEEEEecCc
Q 024451          242 DGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +|++.++...++.|..|+..+
T Consensus       240 ~g~l~v~~~~~~~i~~~~~~g  260 (300)
T 2qc5_A          240 NSEIWFTEWGANQIGRITNDN  260 (300)
T ss_dssp             TTCEEEEETTTTEEEEECTTS
T ss_pred             CCCEEEeccCCCeEEEECCCC
Confidence            999777766678898887644

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.49  E-value=8.2e-13  Score=108.23  Aligned_cols=179  Identities=11%  Similarity=0.032  Sum_probs=122.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCC----CCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPT----DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT   77 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~----~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~   77 (267)
                      .+++++...++++|+.++ +.+|++....    +........ ....+.. |+.++|  ++ .+|+.+ .++.|++||+.
T Consensus        42 lLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           42 NLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEESS
T ss_pred             EEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEch
Confidence            367889999999999985 6669865311    000001111 1224556 999999  44 567777 88999999998


Q ss_pred             CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451           78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS  157 (267)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  157 (267)
                      +.......     ..|+..+.++.+.+++   ++++..||.|.+||++.... . .   +...|.+++|+|+|  ++.|.
T Consensus       115 sl~~~~~~-----~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~-~-~---~~~~Vs~v~WSpkG--~~vg~  179 (388)
T 1xip_A          115 ELSEFRTV-----TSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKST-K-Q---LAQNVTSFDVTNSQ--LAVLL  179 (388)
T ss_dssp             STTCEEEE-----EECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCE-E-E---EEESEEEEEECSSE--EEEEE
T ss_pred             hhhccCcc-----ceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcc-c-c---ccCCceEEEEcCCc--eEEEE
Confidence            65433222     2355667787776542   78889999999999974332 2 2   44679999999998  67789


Q ss_pred             CCCcEEEEeCCCCee--eEEEEeec--C--CCCCCcEEEEEEccCCCEEEE
Q 024451          158 DDGTCRLFDIRTGHQ--LQVYYQQH--G--ENEIPHVTSIAFSISGRLLFA  202 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~--~~~~~~~~--~--~~~~~~v~~~~~s~~~~~l~~  202 (267)
                      .||++++|+.+....  ...+....  .  ..+...|.+++|.+++.++++
T Consensus       180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            999999999877653  22331110  0  013457999999999988876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.49  E-value=1.2e-11  Score=98.35  Aligned_cols=202  Identities=13%  Similarity=0.094  Sum_probs=132.6

Q ss_pred             ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEE
Q 024451           42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL  121 (267)
Q Consensus        42 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~i  121 (267)
                      +..+.....++.|.|++..+++++..++.|..||..++  ...+.     .+...+..+.+++ +++++++...++.|.+
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~-----~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM-----HPSHHQNGHCLNK-QGHLIACSHGLRRLER   94 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE-----SSCSSEEEEEECT-TCCEEEEETTTTEEEE
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE-----CCCCCcceeeECC-CCcEEEEecCCCeEEE
Confidence            34455566789999987657888889999999999887  22231     2345678888886 4567777777789999


Q ss_pred             EeCCCcccceEEeecc----ccceeEEEEecCCCEEEE----eeC-------------CCcEEEEeCCCCeeeEEEEeec
Q 024451          122 WDTRVASRAVRTFHGH----EGDVNTVKFFPDGNRFGT----GSD-------------DGTCRLFDIRTGHQLQVYYQQH  180 (267)
Q Consensus       122 wd~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~~  180 (267)
                      ||..... ........    ...+..++++|+|+++++    ++.             .+.|..++.. ++ ...+..  
T Consensus        95 ~d~~~g~-~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~--  169 (296)
T 3e5z_A           95 QREPGGE-WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIR--  169 (296)
T ss_dssp             ECSTTCC-EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEEC--
T ss_pred             EcCCCCc-EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeec--
Confidence            9985433 22111111    234678999999998887    331             2345555544 33 222221  


Q ss_pred             CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC-ccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       181 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                         .......++|+|+++.+++.+.++.|++||.. .++.......+ ..+......++++++|+++++.  ++.|.+|+
T Consensus       170 ---~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~  243 (296)
T 3e5z_A          170 ---DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLT  243 (296)
T ss_dssp             ---CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEEC
T ss_pred             ---CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEEC
Confidence               12346889999999998777778999999975 23220111111 1234456679999999987766  78999998


Q ss_pred             cCc
Q 024451          260 FGG  262 (267)
Q Consensus       260 ~~~  262 (267)
                      ..+
T Consensus       244 ~~g  246 (296)
T 3e5z_A          244 PDG  246 (296)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            755

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.49  E-value=7.7e-13  Score=108.41  Aligned_cols=183  Identities=13%  Similarity=0.063  Sum_probs=123.9

Q ss_pred             eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEE-----eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEE
Q 024451           48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV-----FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW  122 (267)
Q Consensus        48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iw  122 (267)
                      .++.+++++.. .++++|+.+ .+++|++........     +.......+.. |..+.|   ++..++++ .++.|++|
T Consensus        39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence            47788898865 478888887 455698653220000     11001112445 889998   34566666 88999999


Q ss_pred             eCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE
Q 024451          123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  202 (267)
Q Consensus       123 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  202 (267)
                      |++... .......|...+.++.+.+.  .++++..||.+.+||+++++... .        ...|++++|||+|  ++.
T Consensus       112 dv~sl~-~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~--------~~~Vs~v~WSpkG--~~v  177 (388)
T 1xip_A          112 DLEELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L--------AQNVTSFDVTNSQ--LAV  177 (388)
T ss_dssp             ESSSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E--------EESEEEEEECSSE--EEE
T ss_pred             Echhhh-ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c--------cCCceEEEEcCCc--eEE
Confidence            987543 33445567777887776554  38889999999999998776532 1        1258999999999  788


Q ss_pred             EEeCCeEEEEeCCccce--eeeccc---cc--CCccceEEEEEECCCCCeEEEeEC
Q 024451          203 GYSNGDCYVWDTLLAKV--VLNLGS---LQ--NSHEGRITCLGLSADGSALCTGSW  251 (267)
Q Consensus       203 g~~dg~i~i~d~~~~~~--~~~~~~---~~--~~~~~~v~~~~~~p~~~~l~sgs~  251 (267)
                      |..||.+++|+....+.  ...+..   +.  ..|...|.++.|.+++.+|++-..
T Consensus       178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~  233 (388)
T 1xip_A          178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN  233 (388)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred             EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence            99999999998655442  111211   11  136788999999999999987433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.47  E-value=2.2e-11  Score=108.91  Aligned_cols=237  Identities=13%  Similarity=0.010  Sum_probs=143.3

Q ss_pred             eeeCCCCCeEEEccCC-----CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe-------
Q 024451            3 CAFSPTGQSVACGGLD-----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-------   70 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d-----~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-------   70 (267)
                      .+|+|||++|+.+..+     .+|++||+....       ... ...+...+..+.|+|+ . .|+.++.|+.       
T Consensus       168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~-------~~~-~~~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK-------PLA-DELKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             EEECTTSSEEEEEEEETTCSEEEEEEEETTTCC-------EEE-EEEEEEESCCCEESTT-S-EEEEEECCCC-------
T ss_pred             EEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-------CCC-ccCCCceeccEEEECC-C-EEEEEEecCcccccccc
Confidence            5799999999886654     579999987532       111 1112222357889997 5 4555555543       


Q ss_pred             -------EEEEeCCCCee--EEEeCCccccCCccceEEEEEeCCCCeEEEEecC-----CCeEEEEeCCCcccc-eEEee
Q 024451           71 -------CVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----DSTARLWDTRVASRA-VRTFH  135 (267)
Q Consensus        71 -------v~iwd~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-----d~~i~iwd~~~~~~~-~~~~~  135 (267)
                             |++|++.++..  ..++..   ..+...+..+.+++. ++.++..+.     ...|.+||+...... ...+.
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~---~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~  313 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFAT---PELPKRGHGASVSSD-GRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI  313 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECC---TTCTTCEEEEEECTT-SCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred             cCCCCCEEEEEECCCCchhCEEEecc---CCCCeEEEEEEECCC-CCEEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence                   88999977642  223321   123334778888865 444444443     348999998643212 44455


Q ss_pred             ccccceeEEEEecCCCEEEEeeCC----CcEEEEeCCCCe-eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEE
Q 024451          136 GHEGDVNTVKFFPDGNRFGTGSDD----GTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY  210 (267)
Q Consensus       136 ~~~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~  210 (267)
                      .+........ .|+++.|+..+.+    +.|.+||+.++. ....+....    ...+..+.++ ++.++++...++..+
T Consensus       314 ~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~----~~~l~~~~~~-~~~lv~~~~~dg~~~  387 (741)
T 1yr2_A          314 PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES----KDNLESVGIA-GNRLFASYIHDAKSQ  387 (741)
T ss_dssp             CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC----SSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred             CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC----CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence            5554444443 4889888877754    459999988742 223332221    1236677777 566777788888776


Q ss_pred             EEeCC-ccceeeecccccCCccceEEEEEECCCCCeEE----EeECCCcEEEEecCc
Q 024451          211 VWDTL-LAKVVLNLGSLQNSHEGRITCLGLSADGSALC----TGSWDTNLKIWAFGG  262 (267)
Q Consensus       211 i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~----sgs~dg~i~~w~~~~  262 (267)
                      ||... .++....+   ...+.+.+..++++|+++.|+    +....++|.+|++.+
T Consensus       388 l~~~~~~g~~~~~l---~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          388 VLAFDLDGKPAGAV---SLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             EEEEETTSCEEEEC---BCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             EEEEeCCCCceeec---cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            66543 23322222   122456788999999988666    223357888998754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.47  E-value=1.9e-11  Score=96.35  Aligned_cols=187  Identities=14%  Similarity=0.134  Sum_probs=133.5

Q ss_pred             CeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc-
Q 024451           59 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-  137 (267)
Q Consensus        59 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-  137 (267)
                      +++|++++.|+.|.+||.++++.+..+...    ....+.++.+.+ ++++++  +.++.|..||. .. +.+..+..+ 
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~----~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G-~~~W~~~~~~   75 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLE----KGWECNSVAATK-AGEILF--SYSKGAKMITR-DG-RELWNIAAPA   75 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECC----TTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TS-CEEEEEECCT
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCC----ccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CC-CEEEEEcCCC
Confidence            368999999999999999999887766421    113456777775 566776  44678999997 33 455556543 


Q ss_pred             ccceeEEEEecCCCEEEEeeC-CCcEEEEeCCCCeeeEEEEeecC-CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451          138 EGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHG-ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL  215 (267)
Q Consensus       138 ~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~  215 (267)
                      ...+.++.+.|+|+++++.+. ++.+..+|. +++.+..+..... .........+++.++|+++++...++.|..||..
T Consensus        76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~  154 (276)
T 3no2_A           76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN  154 (276)
T ss_dssp             TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence            346888999999999999887 778888886 5665544432111 0111123455678999999999999999999987


Q ss_pred             ccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          216 LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                       ++.+..+..     .....++.+.|+|+++++++.++.|..++..
T Consensus       155 -G~~~w~~~~-----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          155 -GQLLNSVKL-----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             -SCEEEEEEC-----SSCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             -CCEEEEEEC-----CCCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence             777766532     1234567778999999998888888887764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.46  E-value=1e-11  Score=110.36  Aligned_cols=234  Identities=7%  Similarity=-0.020  Sum_probs=142.1

Q ss_pred             CCCCCeEEEccCCC---eEEEeecCCCCCCCCCCccc---ccccCCeeeEEEEEEecCCCeeEE-----EeeCCCeEEEE
Q 024451            6 SPTGQSVACGGLDS---VCSIFNLNSPTDKDGNLPVS---RMLSGHKGYVSCCQYVPDEDTHLI-----TSSGDQTCVLW   74 (267)
Q Consensus         6 ~~~g~~l~~~~~d~---~v~~w~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~l~-----s~~~d~~v~iw   74 (267)
                      +|+|++++....++   .-.+|....... . ...+.   ..-.+|...+..++|+|++. +|+     .|+.+..|++|
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~l~d~~~~a~~~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~  152 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESG-Q-EKVLLDPNGWSKDGTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVI  152 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTS-C-CEEEECGGGSSSSSCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCC-C-cEEEEchHHhccCCCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEE
Confidence            47888877766544   355665432111 1 00111   11246777899999999875 555     44456789999


Q ss_pred             eCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe-------------EEEEeCCCccc---ceEEeeccc
Q 024451           75 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST-------------ARLWDTRVASR---AVRTFHGHE  138 (267)
Q Consensus        75 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~-------------i~iwd~~~~~~---~~~~~~~~~  138 (267)
                      |+.++....  .... ...  ....++|++. ++.|+.++.|..             |++|++.....   .+.....|.
T Consensus       153 dl~tg~~~~--~~~~-~~~--~~~~~~wspD-g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~  226 (695)
T 2bkl_A          153 DVDSGEWSK--VDVI-EGG--KYATPKWTPD-SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP  226 (695)
T ss_dssp             ETTTCCBCS--SCCB-SCC--TTCCCEECTT-SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT
T ss_pred             ECCCCCCcC--Cccc-Ccc--cccceEEecC-CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC
Confidence            999876430  0011 111  1146778864 556677776655             99999875432   222222344


Q ss_pred             cceeEEEEecCCCEEEEeeCCC----cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe----CCeEE
Q 024451          139 GDVNTVKFFPDGNRFGTGSDDG----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS----NGDCY  210 (267)
Q Consensus       139 ~~i~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~  210 (267)
                      ..+..+.|+|+|++++..+.++    .|.+||..+++. ..+....     ..+....+ +++. ++..+.    ++.|.
T Consensus       227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~-----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~  298 (695)
T 2bkl_A          227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGV-----GAKYEVHA-WKDR-FYVLTDEGAPRQRVF  298 (695)
T ss_dssp             TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECS-----SCCEEEEE-ETTE-EEEEECTTCTTCEEE
T ss_pred             EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCC-----CceEEEEe-cCCc-EEEEECCCCCCCEEE
Confidence            5688999999999998877665    677776654433 2232221     12344445 5666 544443    57899


Q ss_pred             EEeCCccce--eeecccccCCc-cceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          211 VWDTLLAKV--VLNLGSLQNSH-EGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       211 i~d~~~~~~--~~~~~~~~~~~-~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      +||+...+.  ...+   ...+ ...+..++++ ++.++++...|+..+||.+
T Consensus       299 ~~d~~~~~~~~~~~l---~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          299 EVDPAKPARASWKEI---VPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             EEBTTBCSGGGCEEE---ECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCCCccCCeEE---ecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            999865432  1111   1122 4568888888 7788899999999999865

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.46  E-value=5.4e-10  Score=91.80  Aligned_cols=242  Identities=12%  Similarity=0.053  Sum_probs=144.9

Q ss_pred             eeeCCCCCeEEEcc----------CCCeEEEeecCCCCCCCCCCccc--ccccCCeeeEEEEEEecCCCeeEEEee-C-C
Q 024451            3 CAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVS--RMLSGHKGYVSCCQYVPDEDTHLITSS-G-D   68 (267)
Q Consensus         3 ~~~~~~g~~l~~~~----------~d~~v~~w~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~-~-d   68 (267)
                      ++|+|||+.|..+.          .+++|.+||...... ....+..  .... +...-..+.++|++. +|+.+. . +
T Consensus        71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~-~~~i~~~~~~~~~-~g~~p~~~~~spDG~-~l~v~n~~~~  147 (373)
T 2mad_H           71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFD-VGPYSWMNANTPNNA-DLLFFQFAAG  147 (373)
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE-EEEEECCCccccc-cCCCccceEECCCCC-EEEEEecCCC
Confidence            67999999988875          368899999864211 0111110  0000 012234678999875 555554 3 5


Q ss_pred             CeEEEEeCCCCeeEEE-eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-----ccccce-
Q 024451           69 QTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-----GHEGDV-  141 (267)
Q Consensus        69 ~~v~iwd~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~i-  141 (267)
                      ++|.++| .+++.... +...      .   ++.+.+...+.+++.+.||.+.++|. ... ......     ....++ 
T Consensus       148 ~~v~viD-~t~~~~~~~i~~~------~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~-~~~~~~~~~~~~~~~p~~  215 (373)
T 2mad_H          148 PAVGLVV-QGGSSDDQLLSSP------T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG-AAGAGLVGAMLTAAQNLL  215 (373)
T ss_pred             CeEEEEE-CCCCEEeEEcCCC------c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCc-EEEEEeccccccCCccee
Confidence            8899999 88876554 4211      1   12334444556777888999999998 433 221111     111121 


Q ss_pred             eEEEEecCCCEEEEeeCCCcEEEEeCCCCeee--EEEEeecC----CC-CCCcEEEEEEccCCCEEEEEEe---------
Q 024451          142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL--QVYYQQHG----EN-EIPHVTSIAFSISGRLLFAGYS---------  205 (267)
Q Consensus       142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~----~~-~~~~v~~~~~s~~~~~l~~g~~---------  205 (267)
                      ....+.+++..++..+..+.+.+.|+......  ..+.....    .. .......+.++++++.+.+...         
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~  295 (373)
T 2mad_H          216 TQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHA  295 (373)
T ss_pred             ecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccC
Confidence            23455666554444446789999998654321  11100000    00 0112344788999988877653         


Q ss_pred             -CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCC-eEEEeE-CCCcEEEEecCceE
Q 024451          206 -NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGS-WDTNLKIWAFGGYR  264 (267)
Q Consensus       206 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~sgs-~dg~i~~w~~~~~~  264 (267)
                       ++.|.++|..+.+.+..+.     .......++|+|||+ .++++. .++.|.++|....+
T Consensus       296 ~~~~V~VID~~t~~vv~~i~-----~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          296 AAKEVTSVTGLVGQTSSQIS-----LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             CCCeEEEEECCCCEEEEEEE-----CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence             3589999998888766542     122468899999999 777776 48999999986654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.46  E-value=5.5e-10  Score=88.82  Aligned_cols=228  Identities=12%  Similarity=0.084  Sum_probs=141.2

Q ss_pred             eeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ..|+|+ +.++++...++.|..||.....       . ..+ .....+.++.+.|++. +++ +. ++.|.+||.+++..
T Consensus        18 p~w~~~~~~l~~~d~~~~~i~~~d~~~~~-------~-~~~-~~~~~~~~i~~~~dG~-l~v-~~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           18 PVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-------V-QRV-TMDAPVSSVALRQSGG-YVA-TI-GTKFCALNWKEQSA   85 (297)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTCC-------E-EEE-ECSSCEEEEEEBTTSS-EEE-EE-TTEEEEEETTTTEE
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCc-------E-EEE-eCCCceEEEEECCCCC-EEE-EE-CCeEEEEECCCCcE
Confidence            357874 5677777788999999975421       1 111 2335688899999765 444 43 56899999988754


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecC---------CCeEEEEeCCCcccceEEeeccccceeEEEEecCCCE
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR  152 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  152 (267)
                      ........ ......++.+.+++ +++++++...         ...-.+|.+..... ...+..+....+.++|+|+++.
T Consensus        86 ~~~~~~~~-~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~  162 (297)
T 3g4e_A           86 VVLATVDN-DKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKI  162 (297)
T ss_dssp             EEEEECCT-TCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCE
T ss_pred             EEEEecCC-CCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCE
Confidence            43322110 11234577888886 4566665422         12234444332222 2223333445678999999986


Q ss_pred             E-EEeeCCCcEEEEeC--CCCeee--EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc
Q 024451          153 F-GTGSDDGTCRLFDI--RTGHQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  227 (267)
Q Consensus       153 l-~~~~~d~~i~iwd~--~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~  227 (267)
                      + ++.+.++.|.+||+  .++...  ..+.. . ......+..++++++|++.++...++.|..||..+++.+..+.   
T Consensus       163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~-~-~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~---  237 (297)
T 3g4e_A          163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYK-L-EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK---  237 (297)
T ss_dssp             EEEEEGGGTEEEEEEECTTTCCEEEEEEEEE-C-CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE---
T ss_pred             EEEecCCCCcEEEEeccCCCCcccCcEEEEE-C-CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE---
Confidence            6 45566789999987  344321  12221 1 1112356789999999988888888899999987776654432   


Q ss_pred             CCccceEEEEEEC-CCCCeEEEeEC
Q 024451          228 NSHEGRITCLGLS-ADGSALCTGSW  251 (267)
Q Consensus       228 ~~~~~~v~~~~~~-p~~~~l~sgs~  251 (267)
                       .+...+++++|. |+++.|..++.
T Consensus       238 -~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          238 -LPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             -CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             -CCCCCceEEEEeCCCCCEEEEEcC
Confidence             234578999998 88887655443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.46  E-value=5.7e-10  Score=96.35  Aligned_cols=236  Identities=13%  Similarity=0.045  Sum_probs=152.1

Q ss_pred             CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC--CCeeEE
Q 024451            6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT--TGLRTS   83 (267)
Q Consensus         6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~~~   83 (267)
                      +|.+..+++...+++|.++|.....       +...+.. ...++.+.|+|++ +++++++.|+.|.+||+.  +.....
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~-------v~~~i~~-g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~  234 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYE-------IKTVLDT-GYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVA  234 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCC-------EEEEEEC-SSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCe-------EEEEEeC-CCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeE
Confidence            3456778888999999999986521       3333322 2245688999976 578888899999999995  655444


Q ss_pred             EeCCccccCCccceEEEEEeC----CCCeEEEEecCCCeEEEEeCCCcccceEEeec----------c-ccceeEEEEec
Q 024451           84 VFGGEFQSGHTADVLSVSISG----SNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----------H-EGDVNTVKFFP  148 (267)
Q Consensus        84 ~~~~~~~~~~~~~i~~~~~~~----~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~----------~-~~~i~~~~~~~  148 (267)
                      .+.    .+  .....+.+++    ....++++...++.+.++|..+. +.+..+..          | ...+..+..++
T Consensus       235 ~i~----~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~-~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~  307 (567)
T 1qks_A          235 EIK----IG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMTYDEQEYHPEPRVAAILASH  307 (567)
T ss_dssp             EEE----CC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred             EEe----cC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC-cEEEEEeccccccccccccCCCceEEEEEcC
Confidence            332    11  2346788883    44455566667799999997643 34443321          1 12567788888


Q ss_pred             CCCEE-EEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeeccc-
Q 024451          149 DGNRF-GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGS-  225 (267)
Q Consensus       149 ~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~-  225 (267)
                      ++..+ +....+|.|.++|..+.+.+.......    ......+.|+|++++++++. .++.|.++|..+++......- 
T Consensus       308 ~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~----~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg  383 (567)
T 1qks_A          308 YRPEFIVNVKETGKILLVDYTDLNNLKTTEISA----ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG  383 (567)
T ss_dssp             SSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC----CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             CCCEEEEEecCCCeEEEEecCCCccceeeeeec----cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc
Confidence            76554 445567999999987654333221111    13467889999999987766 578999999998876654422 


Q ss_pred             ccCCccceEEEEEECCCC-CeEEEeE-CCCcEEEEecCc
Q 024451          226 LQNSHEGRITCLGLSADG-SALCTGS-WDTNLKIWAFGG  262 (267)
Q Consensus       226 ~~~~~~~~v~~~~~~p~~-~~l~sgs-~dg~i~~w~~~~  262 (267)
                      -...|.+.-..+ ++|++ ..++++. .++.|.+++...
T Consensus       384 g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          384 GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            223454322222 57874 4445543 368999998653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.44  E-value=2e-10  Score=92.77  Aligned_cols=223  Identities=8%  Similarity=-0.035  Sum_probs=141.2

Q ss_pred             CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccc
Q 024451           17 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD   96 (267)
Q Consensus        17 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~   96 (267)
                      .+++|.+||........ ......--.........+.+..  +...++...++.|.+||..+++.+..+.      ....
T Consensus        15 ~~~~l~~~d~~t~~~~~-~i~~~~n~~~lg~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~------~~~~   85 (328)
T 3dsm_A           15 SNATLSYYDPATCEVEN-EVFYRANGFKLGDVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRIT------GFTS   85 (328)
T ss_dssp             CCBEEEEEETTTTEEEC-SHHHHHHSSCCBSCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEE------CCSS
T ss_pred             CCceEEEEECCCCEEhh-hhHhhhcCcccCccceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcC------CCCC
Confidence            48999999986522100 0000000001123345566643  4566667778999999999987766552      1244


Q ss_pred             eEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc-----cceeEEEEecCCCEEEEee-CCCcEEEEeCCCC
Q 024451           97 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-----GDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTG  170 (267)
Q Consensus        97 i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~  170 (267)
                      ...+++++. ++++++...++.|.+||.... +....+....     .....+++ .++..+++.. .++.|.++|+.++
T Consensus        86 p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~-~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A           86 PRYIHFLSD-EKAYVTQIWDYRIFIINPKTY-EITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD  162 (328)
T ss_dssp             EEEEEEEET-TEEEEEEBSCSEEEEEETTTT-EEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT
T ss_pred             CcEEEEeCC-CeEEEEECCCCeEEEEECCCC-eEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC
Confidence            667778654 477777667899999998743 3333333221     14556777 4444455444 4889999999988


Q ss_pred             eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC----------CeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          171 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN----------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      +....+..  .    .....+.++++|+++++...+          +.|.++|..+.+....+.   .........++|+
T Consensus       163 ~~~~~i~~--g----~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~---~~~g~~p~~la~~  233 (328)
T 3dsm_A          163 KVVDELTI--G----IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK---FKLGDWPSEVQLN  233 (328)
T ss_dssp             EEEEEEEC--S----SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE---CCTTCCCEEEEEC
T ss_pred             eEEEEEEc--C----CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe---cCCCCCceeEEEe
Confidence            76654422  1    124678899999977776654          789999988776554331   1112356889999


Q ss_pred             CCCCeEEEeECCCcEEEEecCc
Q 024451          241 ADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       241 p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      |+++.|..+..  .|.+|+...
T Consensus       234 ~d~~~lyv~~~--~v~~~d~~t  253 (328)
T 3dsm_A          234 GTRDTLYWINN--DIWRMPVEA  253 (328)
T ss_dssp             TTSCEEEEESS--SEEEEETTC
T ss_pred             cCCCEEEEEcc--EEEEEECCC
Confidence            99998887643  888888643

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.41  E-value=7.3e-11  Score=105.06  Aligned_cols=199  Identities=6%  Similarity=-0.062  Sum_probs=126.8

Q ss_pred             cCCeeeEEEEEEecCCCeeEEEeeC-CC----eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451           43 SGHKGYVSCCQYVPDEDTHLITSSG-DQ----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  117 (267)
Q Consensus        43 ~~h~~~v~~~~~~~~~~~~l~s~~~-d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~  117 (267)
                      .+|+..+..++|+|++. +|+.++. +|    .|++||+.++.......      ....+..+.|++. ++.|+.++.++
T Consensus       121 ~~~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~------~~~~~~~~~wspD-g~~l~~~~~~~  192 (710)
T 2xdw_A          121 DDGTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPDVL------ERVKFSCMAWTHD-GKGMFYNAYPQ  192 (710)
T ss_dssp             TTSCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEEEE------EEECSCCEEECTT-SSEEEEEECCC
T ss_pred             cCCCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCcccc------cCcccceEEEEeC-CCEEEEEEECC
Confidence            45667889999999875 5554433 33    89999999987554211      1112456889875 45556665554


Q ss_pred             e----------------EEEEeCCCcccc-eEEee--ccccceeEEEEecCCCEEEEeeC-----CCcEEEEeCCC----
Q 024451          118 T----------------ARLWDTRVASRA-VRTFH--GHEGDVNTVKFFPDGNRFGTGSD-----DGTCRLFDIRT----  169 (267)
Q Consensus       118 ~----------------i~iwd~~~~~~~-~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~----  169 (267)
                      .                |++|++...... ...+.  .|...+..+.|+|+|++++..+.     +..|.+||+.+    
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~  272 (710)
T 2xdw_A          193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (710)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             ccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence            4                999998654321 12222  23445778999999999887764     67899999976    


Q ss_pred             --Ce-eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC----CeEEEEeCCccce--eeecccccCCcc-ceEEEEEE
Q 024451          170 --GH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLLAKV--VLNLGSLQNSHE-GRITCLGL  239 (267)
Q Consensus       170 --~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d----g~i~i~d~~~~~~--~~~~~~~~~~~~-~~v~~~~~  239 (267)
                        +. ....+....     ..+.. .|+++|..|+..+..    +.|.+||+.....  ...+   ...+. ..+..++|
T Consensus       273 ~~~~~~~~~l~~~~-----~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l---~~~~~~~~~~~~~~  343 (710)
T 2xdw_A          273 ITGILKWVKLIDNF-----EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL---VPEHEKDVLEWVAC  343 (710)
T ss_dssp             SCSSCCCEEEECSS-----SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE---ECCCSSCEEEEEEE
T ss_pred             cCCccceEEeeCCC-----CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec---cCCCCCCeEEEEEE
Confidence              42 233332211     12233 478899887776653    3699999866431  1111   11122 36888999


Q ss_pred             CCCCCeEEEeECCCcEEEE
Q 024451          240 SADGSALCTGSWDTNLKIW  258 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w  258 (267)
                      ++++.++++...|+..+||
T Consensus       344 ~~~~~lv~~~~~~g~~~l~  362 (710)
T 2xdw_A          344 VRSNFLVLCYLHDVKNTLQ  362 (710)
T ss_dssp             ETTTEEEEEEEETTEEEEE
T ss_pred             EcCCEEEEEEEECCEEEEE
Confidence            9888888999999965555

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.40  E-value=3.4e-10  Score=88.34  Aligned_cols=196  Identities=9%  Similarity=0.006  Sum_probs=131.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .++++++|+++++.. ++.|.+||.....       ...........+..+.+.|++ .++++...++.|.+|+..+...
T Consensus        71 ~i~~~~~g~l~v~~~-~~~i~~~d~~~~~-------~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~  141 (270)
T 1rwi_B           71 GLAVDGAGTVYVTDF-NNRVVTLAAGSNN-------QTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQ  141 (270)
T ss_dssp             CEEECTTCCEEEEET-TTEEEEECTTCSC-------CEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSC
T ss_pred             eeEECCCCCEEEEcC-CCEEEEEeCCCce-------EeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCcee
Confidence            467899999777776 8899999865421       111111223457889998865 4566666788999998665433


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ....     ......+..+++++ +++++++...++.|.+|+..... .......+...+..++++++|..+++...++.
T Consensus       142 ~~~~-----~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~  214 (270)
T 1rwi_B          142 TVLP-----FTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNN-QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ  214 (270)
T ss_dssp             EECC-----CCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCC-EEECCCSSCCSEEEEEECTTCCEEEEETTTSC
T ss_pred             Eeec-----cccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCc-eEeecccCCCCceEEEECCCCCEEEEECCCCc
Confidence            2211     11223456777876 45677777778899999976422 22222223356789999999988888778899


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK  218 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~  218 (267)
                      |.+||........ .    .......+..++++++|+++++...++.|++|+....+
T Consensus       215 v~~~~~~~~~~~~-~----~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          215 VVKLLAGSTTSTV-L----PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEEECTTCSCCEE-C----CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             EEEEcCCCCccee-e----ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            9999986543221 1    11122357899999999988888889999999976544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.39  E-value=9.6e-10  Score=91.45  Aligned_cols=243  Identities=9%  Similarity=0.105  Sum_probs=151.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC--eEEEEeCCCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTG   79 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~   79 (267)
                      .++|+++|+++++...++.|++||.....       +....... .... ++|.|++. .|+.+..++  .|.+++...+
T Consensus       135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~-------~~~~~~~~-~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          135 GIAAVGNNTVLAYQRDDPRVRLISVDDNK-------VTTVHPGF-KGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             EEEECSTTEEEEEETTTTEEEEEETTTTE-------EEEEEETC-CBCB-CEECTTSS-EEEEEBSSTTCEEEEEEGGGT
T ss_pred             EEEEeCCCCEEEEecCCCcEEEEECCCCE-------EEEeeccC-CCCc-eeEecCCC-cEEEEecCCCceEEEEEcCCC
Confidence            46789999989988888999999976421       11111121 1223 78888764 566666655  7888888765


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe-----eccccce--eEEEEecC-CC
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-----HGHEGDV--NTVKFFPD-GN  151 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~i--~~~~~~~~-~~  151 (267)
                      .....+. .........+..+++++.++.+++ +..++.|..||.....  ...+     .++...-  ..++|+|+ +.
T Consensus       205 ~~~~~~g-~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g~  280 (409)
T 3hrp_A          205 WAPTRIG-QLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDSN  280 (409)
T ss_dssp             TCEEEEE-ECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred             ceeEEee-eccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCCE
Confidence            4322220 000112344567888875666666 5668899999986432  2222     1222222  38999995 66


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEEeec-CCC---------CCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCcccee
Q 024451          152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQH-GEN---------EIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVV  220 (267)
Q Consensus       152 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~---------~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~  220 (267)
                      ++++-..++.|+.|+....  ...+.... ...         .......++++++|+++++-. .++.|+.||...++..
T Consensus       281 lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~  358 (409)
T 3hrp_A          281 FYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS  358 (409)
T ss_dssp             EEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred             EEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence            6666677889999997643  22232221 000         012478999999999888877 7899999996555432


Q ss_pred             eeccc-ccC---------CccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          221 LNLGS-LQN---------SHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       221 ~~~~~-~~~---------~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ..... ...         ..-.....++++|+|.++++-..++.|+.+++
T Consensus       359 ~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          359 TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            11110 000         01134688999999988888888888888764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.37  E-value=2.1e-09  Score=86.61  Aligned_cols=224  Identities=17%  Similarity=0.135  Sum_probs=136.1

Q ss_pred             eeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .+|+|+ +.++.+...++.|..||.....       . ..+ .+...+.++.+.|++ .++++ +.+ .|.+||..++..
T Consensus        54 p~~~~~~~~l~~~d~~~~~i~~~d~~~~~-------~-~~~-~~~~~v~~i~~~~dg-~l~v~-~~~-gl~~~d~~~g~~  121 (326)
T 2ghs_A           54 PTFDPASGTAWWFNILERELHELHLASGR-------K-TVH-ALPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGVL  121 (326)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTE-------E-EEE-ECSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCE
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEECCCCc-------E-EEE-ECCCcceEEEEeCCC-eEEEE-ECC-CEEEEECCCCcE
Confidence            468887 4566676678899999875421       1 111 123468889999875 44443 444 499999987764


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecC------CCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEE
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT  155 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  155 (267)
                      ........ ......+..+.+++. ++++++...      .+.|..++ .  .. ...+..+......++|+|+++.++.
T Consensus       122 ~~~~~~~~-~~~~~~~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~~~~-~--g~-~~~~~~~~~~~~~i~~s~dg~~lyv  195 (326)
T 2ghs_A          122 TLHAELES-DLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA-K--GK-VTKLFADISIPNSICFSPDGTTGYF  195 (326)
T ss_dssp             EEEECSST-TCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE-T--TE-EEEEEEEESSEEEEEECTTSCEEEE
T ss_pred             EEEeeCCC-CCCCCCCCCEEECCC-CCEEEEeCCCcCCCCceEEEEEe-C--Cc-EEEeeCCCcccCCeEEcCCCCEEEE
Confidence            43322110 011245788888864 556655432      23455555 2  22 2233333345678999999987654


Q ss_pred             -eeCCCcEEEEeCC--CC-ee--eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCC
Q 024451          156 -GSDDGTCRLFDIR--TG-HQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS  229 (267)
Q Consensus       156 -~~~d~~i~iwd~~--~~-~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~  229 (267)
                       ...++.|.+||++  ++ +.  ...+...  ......+..++++++|.+.++...++.|..||. .++.+..+    ..
T Consensus       196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~--~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i----~~  268 (326)
T 2ghs_A          196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDS--TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY----EV  268 (326)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEEC--TTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE----EC
T ss_pred             EECCCCEEEEEEcccccCCcccCceEEEEC--CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEE----EC
Confidence             4567899999986  44 21  1122211  111234678899999998888777789999997 44443332    12


Q ss_pred             ccceEEEEEEC-CCCCeEEEeEC
Q 024451          230 HEGRITCLGLS-ADGSALCTGSW  251 (267)
Q Consensus       230 ~~~~v~~~~~~-p~~~~l~sgs~  251 (267)
                      +...+.+++|+ |+++.|..++.
T Consensus       269 ~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          269 PGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             SCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCCCcEEEEEecCCCCEEEEEec
Confidence            34468999998 89887755444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.37  E-value=5.1e-09  Score=82.71  Aligned_cols=232  Identities=7%  Similarity=-0.035  Sum_probs=147.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .+++.++|+++++...++.|..||... .     . ....+......+..+.+.+++ .+.++...++.|..+|.. +..
T Consensus        66 ~i~~~~~g~l~v~~~~~~~v~~~d~~g-~-----~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~  136 (300)
T 2qc5_A           66 CLIVSSLGDIWFTENGANKIGKLSKKG-G-----F-TEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTI  136 (300)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTS-C-----E-EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCE
T ss_pred             eEEECCCCCEEEEecCCCeEEEECCCC-C-----e-EEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCE
Confidence            356788999888877788899998652 1     1 111122233567888888865 455666667899999987 433


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      .... .   ......+..+.+.+ +++++++...++.|..++.. ..........+...+..+.+.++++..++....+.
T Consensus       137 ~~~~-~---~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  210 (300)
T 2qc5_A          137 YEYD-L---PNKGSYPAFITLGS-DNALWFTENQNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK  210 (300)
T ss_dssp             EEEE-C---SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             EEcc-C---CCCCCCceeEEECC-CCCEEEEecCCCeEEEECCC-CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE
Confidence            2211 1   11234567888875 45677777777889999873 22111112223456789999999987777767788


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      |.+||. +++... +..   ......+..+++++++++.++...++.|..||.. ++.. ... . ......+.+++++|
T Consensus       211 i~~~~~-~g~~~~-~~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~-~-~~~~~~~~~i~~~~  281 (300)
T 2qc5_A          211 IGRITT-TGEISE-YDI---PTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQ-EYQ-L-QTENAEPHGITFGK  281 (300)
T ss_dssp             EEEECT-TCCEEE-EEC---SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEE-C-CSTTCCCCCEEECT
T ss_pred             EEEEcC-CCcEEE-EEC---CCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEE-EEE-C-CccCCccceeEeCC
Confidence            999998 444322 211   1123457899999999977776667899999973 3322 111 1 12234578899999


Q ss_pred             CCCeEEEeECCCcEEEEe
Q 024451          242 DGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~  259 (267)
                      +|+++++.. . .|..++
T Consensus       282 ~g~l~v~~~-~-~i~~~~  297 (300)
T 2qc5_A          282 DGSVWFALK-C-KIGKLN  297 (300)
T ss_dssp             TSCEEEECS-S-EEEEEE
T ss_pred             CCCEEEEcc-C-ceEEeC
Confidence            998777654 4 555554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.37  E-value=1.4e-10  Score=103.67  Aligned_cols=236  Identities=11%  Similarity=0.044  Sum_probs=137.7

Q ss_pred             CCCCCeEEEccCCCe---EEEeecCCCCCCCCCCccc----ccccCCeeeEEEEEEecCCCeeEEEee-CC----CeEEE
Q 024451            6 SPTGQSVACGGLDSV---CSIFNLNSPTDKDGNLPVS----RMLSGHKGYVSCCQYVPDEDTHLITSS-GD----QTCVL   73 (267)
Q Consensus         6 ~~~g~~l~~~~~d~~---v~~w~~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d----~~v~i   73 (267)
                      +|+|++++....++.   -.+|.........+.....    ..-.+|...+..++|+|++. +|+.++ .+    ..|++
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v  193 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGR-LLAYSVQDGGSDWRTVKF  193 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSS-EEEEEEEETTCSEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCC-EEEEEEcCCCCceEEEEE
Confidence            478988877665443   5667654320000111110    11234556788999999875 455443 32    36999


Q ss_pred             EeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--------------eEEEEeCCCcccc-eEEeec--
Q 024451           74 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--------------TARLWDTRVASRA-VRTFHG--  136 (267)
Q Consensus        74 wd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--------------~i~iwd~~~~~~~-~~~~~~--  136 (267)
                      ||+.++......      .+...+..+.|++. . .|+.+..++              .|++|++...... ...+..  
T Consensus       194 ~dl~tg~~~~~~------~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~  265 (741)
T 1yr2_A          194 VGVADGKPLADE------LKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE  265 (741)
T ss_dssp             EETTTCCEEEEE------EEEEESCCCEESTT-S-EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             EECCCCCCCCcc------CCCceeccEEEECC-C-EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC
Confidence            999988654321      01112246778875 4 455554443              3889987643321 222222  


Q ss_pred             cccceeEEEEecCCCEEEEeeCCC-----cEEEEeCCCCe-e-eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe----
Q 024451          137 HEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGH-Q-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS----  205 (267)
Q Consensus       137 ~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~-~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----  205 (267)
                      +...+..+.|+|+|++++..+.++     .|.+||+.++. . ...+....     ...... ++|+++.|+..+.    
T Consensus       266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-----~~~~~~-~~~dg~~l~~~s~~~~~  339 (741)
T 1yr2_A          266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL-----KAQWDF-VDGVGDQLWFVSGDGAP  339 (741)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS-----SSCEEE-EEEETTEEEEEECTTCT
T ss_pred             CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC-----CceEEE-EeccCCEEEEEECCCCC
Confidence            223478999999999988777544     89999998762 1 23332211     122333 3488888887765    


Q ss_pred             CCeEEEEeCCccc-eeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          206 NGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       206 dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ++.|++||+.... ....+   ...+...+..++++ ++.++++...|+..+||.+
T Consensus       340 ~~~l~~~d~~~~~~~~~~l---~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          340 LKKIVRVDLSGSTPRFDTV---VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             TCEEEEEECSSSSCEEEEE---ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred             CCEEEEEeCCCCccccEEE---ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            3469999986531 11111   12344567778887 6678888999999888865

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.33  E-value=8.5e-10  Score=88.04  Aligned_cols=227  Identities=9%  Similarity=0.075  Sum_probs=137.6

Q ss_pred             eeeCCCCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ..|+|+|+ ++++...++.|..|+...      .   ...+..+...+..+.+.+++ +++++...++.|.+|+.+ +..
T Consensus        50 p~~~~~g~~l~~~d~~~~~i~~~~~~g------~---~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~  118 (305)
T 3dr2_A           50 PAWWEAQRTLVWSDLVGRRVLGWREDG------T---VDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQA  118 (305)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEETTS------C---EEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCE
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEeCCC------C---EEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC-CCE
Confidence            46889998 677777889999997532      1   12233445667889999875 455544556789999986 432


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEE----ecC-------------CCeEEEEeCCCcccceEEeeccccceeEE
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVS----GSC-------------DSTARLWDTRVASRAVRTFHGHEGDVNTV  144 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~  144 (267)
                      ..... .........+..+.+.+ +++++++    +..             .+.|..+|.....  ...+. .....+.+
T Consensus       119 ~~~~~-~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~--~~~~~-~~~~p~gl  193 (305)
T 3dr2_A          119 HLLVG-RYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP--LQRMA-DLDHPNGL  193 (305)
T ss_dssp             EEEEC-EETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC--CEEEE-EESSEEEE
T ss_pred             EEEEe-ccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc--EEEEe-cCCCCcce
Confidence            22211 11111112355677875 5667776    332             2457777764322  22222 33456789


Q ss_pred             EEecCCCEEEEeeCC------CcEEEEeCCCCeeeEE--EEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451          145 KFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQV--YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  216 (267)
Q Consensus       145 ~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~  216 (267)
                      +|+|+++.++.+...      +.|.+||+.... +..  .+...   .......++++++|++.++. .+ .|.+||.. 
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~---~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~-  266 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASV---PDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSD-  266 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECC---SSSCCCSEEECTTSCEEECC-SS-EEEEECTT-
T ss_pred             EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEEC---CCCCCCeEEECCCCCEEEec-CC-cEEEECCC-
Confidence            999999977766554      789999987654 211  11111   11234567889999955544 44 49999974 


Q ss_pred             cceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEE
Q 024451          217 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI  257 (267)
Q Consensus       217 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~  257 (267)
                      ++.+..+.    ... .+.+++|+|+++.|..++.++..++
T Consensus       267 g~~~~~~~----~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          267 GQLLGHIP----TPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             SCEEEEEE----CSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             CCEEEEEE----CCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            44433321    122 4778999999998888887754444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.33  E-value=4.4e-10  Score=91.32  Aligned_cols=240  Identities=12%  Similarity=0.077  Sum_probs=144.2

Q ss_pred             ceeeCCCCCeEEEcc--CCCeEEEeecCCCCCCCCCCcc-cccccCCeeeEEEEEEecCCCeeEEEeeC-----CCeEEE
Q 024451            2 TCAFSPTGQSVACGG--LDSVCSIFNLNSPTDKDGNLPV-SRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQTCVL   73 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~--~d~~v~~w~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----d~~v~i   73 (267)
                      .++++|+|+++++..  .++.++||.+...  .....|. .....+|...+..+++.+++ ++.++-..     +..|.+
T Consensus        21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g--~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~   97 (343)
T 2qe8_A           21 NITLTPDGRLFLSLHQFYQPEMQVAELTQD--GLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVA   97 (343)
T ss_dssp             EEEECTTSCEEEEECGGGCCSCSEEEEETT--EEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEE
T ss_pred             eEEECCCCCEEEEeCCCCCCceEEEEECCC--CeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEE
Confidence            367899999998853  2343566665411  0000010 01223566789999999875 44443322     578999


Q ss_pred             EeCCCCeeEEEeCCc-cccCCccceEEEEEeCCCCeEEEEec---CCCeEEEEeCCCcccceEEeecc------------
Q 024451           74 WDITTGLRTSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGH------------  137 (267)
Q Consensus        74 wd~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~s~~---~d~~i~iwd~~~~~~~~~~~~~~------------  137 (267)
                      ||+.+++....+... ....+...+..+++++..+..+++..   .++.|.+||.... +..+.+.+|            
T Consensus        98 ~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~~~~~~~~  176 (343)
T 2qe8_A           98 WDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAPEDIDLVI  176 (343)
T ss_dssp             EETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSCCSCCCEE
T ss_pred             EECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCcccccccceeE
Confidence            999988755544321 11123345678888866667777766   6789999998633 233323221            


Q ss_pred             -----------------ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCC-----e--------eeEEEEeecCCCCCCc
Q 024451          138 -----------------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG-----H--------QLQVYYQQHGENEIPH  187 (267)
Q Consensus       138 -----------------~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~--------~~~~~~~~~~~~~~~~  187 (267)
                                       ...+..++|+|+++.|+.+..++. ++|.+...     .        .+.. ...     ...
T Consensus       177 ~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~-----~g~  249 (343)
T 2qe8_A          177 DGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIER-YSE-----KPI  249 (343)
T ss_dssp             TTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEE-EEE-----CCS
T ss_pred             CCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEe-ccc-----CCC
Confidence                             023578999999998887766553 44443211     0        0000 011     113


Q ss_pred             EEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcE
Q 024451          188 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL  255 (267)
Q Consensus       188 v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i  255 (267)
                      ...++++++|.++++...++.|.+||...++.. ....  ..+.....+++|.|+++++++.+..+.+
T Consensus       250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~-~~~~--~~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          250 CDGISIDKDHNIYVGDLAHSAIGVITSADRAYK-LLVT--DEKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             CSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE-EEEE--CGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             CceEEECCCCCEEEEccCCCeEEEEECCCCCEE-EEEE--CCceecCCeeEECCCCcEEEEeCccccc
Confidence            456889999999999989999999997344322 1111  1123457899999999988887654433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.32  E-value=1.1e-09  Score=97.17  Aligned_cols=232  Identities=15%  Similarity=0.126  Sum_probs=141.1

Q ss_pred             eeeCCCCCeEE-----EccCCCeEEEeecCCCCCCCCCCcccccccCCeee--EEEEEEecCCCeeEEEeeCCC------
Q 024451            3 CAFSPTGQSVA-----CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY--VSCCQYVPDEDTHLITSSGDQ------   69 (267)
Q Consensus         3 ~~~~~~g~~l~-----~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~l~s~~~d~------   69 (267)
                      .+|+|||++|+     .|+.+.+|++||+....       ...   .+...  ...++|+ +++ .|+.++.+.      
T Consensus       134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-------~~~---~~~~~~k~~~~~Ws-Dg~-~l~y~~~~~~~~~~~  201 (693)
T 3iuj_A          134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-------PLE---TPLKDVKFSGISWL-GNE-GFFYSSYDKPDGSEL  201 (693)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-------EEE---EEEEEEESCCCEEE-TTT-EEEEEESSCCC----
T ss_pred             EEECCCCCEEEEEEecCCCceEEEEEEECCCCC-------CCc---cccCCceeccEEEe-CCC-EEEEEEecCcccccc
Confidence            47999999988     45555789999987532       111   12222  2467898 775 455565553      


Q ss_pred             -------eEEEEeCCCCee--EEEeCCccccC-CccceEEEEEeCCCCeEEEEec---CCCeEEEEeCCCcccceEEeec
Q 024451           70 -------TCVLWDITTGLR--TSVFGGEFQSG-HTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHG  136 (267)
Q Consensus        70 -------~v~iwd~~~~~~--~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~s~~---~d~~i~iwd~~~~~~~~~~~~~  136 (267)
                             .|++|++.++..  ..++..   .. |......+.+++....++++..   .+..|.++|+.........+..
T Consensus       202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~---~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~  278 (693)
T 3iuj_A          202 SARTDQHKVYFHRLGTAQEDDRLVFGA---IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG  278 (693)
T ss_dssp             ---CCCCEEEEEETTSCGGGCEEEESC---SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred             cccCCCcEEEEEECCCCcccceEEEec---CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence                   499999987642  233321   12 3344677888876555555543   2358999998654334455555


Q ss_pred             cccceeEEEEecCCCEEEEee-CC---CcEEEEeCCCCee--eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC---
Q 024451          137 HEGDVNTVKFFPDGNRFGTGS-DD---GTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---  207 (267)
Q Consensus       137 ~~~~i~~~~~~~~~~~l~~~~-~d---~~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg---  207 (267)
                      +....... ++++++.|+..+ .|   +.|..+|+.++..  ...+.. +..    .+.  .|+++++.|+....++   
T Consensus       279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~----~~~--~~s~~g~~lv~~~~~~g~~  350 (693)
T 3iuj_A          279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP-ERQ----QVL--TVHSGSGYLFAEYMVDATA  350 (693)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-CCS----SCE--EEEEETTEEEEEEEETTEE
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec-CCC----CEE--EEEEECCEEEEEEEECCee
Confidence            55555444 666666655444 33   5788999887643  122222 111    223  7889999888776544   


Q ss_pred             eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC----CcEEEEecC
Q 024451          208 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD----TNLKIWAFG  261 (267)
Q Consensus       208 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d----g~i~~w~~~  261 (267)
                      .|++||+.... ...+   .....+.+..+.++|+++.|+....+    +++..|++.
T Consensus       351 ~l~~~d~~g~~-~~~l---~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~  404 (693)
T 3iuj_A          351 RVEQFDYEGKR-VREV---ALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK  404 (693)
T ss_dssp             EEEEECTTSCE-EEEE---CCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEEEEECCCCe-eEEe---ecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence            78899876432 2222   12344567788888888877655444    678888763

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.26  E-value=1.7e-09  Score=88.35  Aligned_cols=239  Identities=11%  Similarity=0.044  Sum_probs=144.4

Q ss_pred             eeeCCCCCeEEEcc----------CCCeEEEeecCCCCCCCCCCccccccc-CC------eeeEEEEEEecCCCeeEEEe
Q 024451            3 CAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRMLS-GH------KGYVSCCQYVPDEDTHLITS   65 (267)
Q Consensus         3 ~~~~~~g~~l~~~~----------~d~~v~~w~~~~~~~~~~~~~~~~~~~-~h------~~~v~~~~~~~~~~~~l~s~   65 (267)
                      ++++|||+++..+.          .++.|.+||.....       ....+. +.      ...-..+.|+|++. +++.+
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~-------v~~~I~v~~g~r~~~g~~P~~~a~spDGk-~lyVa  154 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL-------PTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFY  154 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC-------EEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEE
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe-------EEEEEECCCccccccCCCCceEEEcCCCC-EEEEE
Confidence            57899999887765          36789999986532       112111 00      01233578899875 45544


Q ss_pred             e--CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc----cc
Q 024451           66 S--GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EG  139 (267)
Q Consensus        66 ~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~  139 (267)
                      .  .++.|.++|..+.+....+...   + .     .-+.|...+.+++.+.||.+-+.++....+.......+    ..
T Consensus       155 n~~~~~~VsVID~~t~~vv~tI~v~---g-~-----~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~  225 (386)
T 3sjl_D          155 QFSPAPAVGVVDLEGKAFKRMLDVP---D-C-----YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE  225 (386)
T ss_dssp             ECSSSCEEEEEETTTTEEEEEEECC---S-E-----EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS
T ss_pred             EcCCCCeEEEEECCCCcEEEEEECC---C-c-----ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccc
Confidence            4  3789999999998776665321   1 1     11223344566678889998888886433332111111    12


Q ss_pred             cee-EEEEe-cCCCEEEEeeCCCcEEEEeCCCCee--eEEEE--ee---cCCCCCCcEEEEEEccCCCEEEEEEe-----
Q 024451          140 DVN-TVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQ--LQVYY--QQ---HGENEIPHVTSIAFSISGRLLFAGYS-----  205 (267)
Q Consensus       140 ~i~-~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~--~~---~~~~~~~~v~~~~~s~~~~~l~~g~~-----  205 (267)
                      .+. ...|. ++|+++. .+.++.+.+.|+.+...  ...+.  ..   ...-.......++++++++.++....     
T Consensus       226 ~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~  304 (386)
T 3sjl_D          226 FLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW  304 (386)
T ss_dssp             CBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred             cccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence            222 24554 5675544 45578999999976542  11110  00   00000112234677899888877653     


Q ss_pred             -----CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCC-eEEEe-ECCCcEEEEecCceE
Q 024451          206 -----NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTG-SWDTNLKIWAFGGYR  264 (267)
Q Consensus       206 -----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~sg-s~dg~i~~w~~~~~~  264 (267)
                           ...|.++|..+.+.+..+.     -..++..++++||++ .|++. ..++.|.++|....+
T Consensus       305 ~hk~~~~~V~viD~~t~kv~~~i~-----vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          305 RHKTASRFVVVLDAKTGERLAKFE-----MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             CTTSCEEEEEEEETTTCCEEEEEE-----EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             ccCCCCCEEEEEECCCCeEEEEEE-----CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence                 2579999999988876552     123678999999997 66654 448999999975543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.20  E-value=2.1e-08  Score=83.40  Aligned_cols=202  Identities=16%  Similarity=0.055  Sum_probs=129.1

Q ss_pred             eeeCCCCCeEEEccCCC--eEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            3 CAFSPTGQSVACGGLDS--VCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~--~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      ++|+|+++.|+.+..++  .|.+|+......    ......+ ..+...+.++++.|+++. |+.+..++.|+.||..++
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~----~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~  250 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA----PTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQ  250 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC----EEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTC
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCce----eEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCC
Confidence            57899999888888766  677777643210    0011011 113455677889985554 444677889999999876


Q ss_pred             eeEEEeCCccccCCccce-E-EEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc---------------ccee
Q 024451           80 LRTSVFGGEFQSGHTADV-L-SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE---------------GDVN  142 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i-~-~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~---------------~~i~  142 (267)
                      ......... ..++...- . .+++++.++.++++...++.|+.|+....   ...+.++.               ....
T Consensus       251 ~~~~~~~~~-~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~  326 (409)
T 3hrp_A          251 EVTLIKQLE-LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPN  326 (409)
T ss_dssp             CEEEEEECC-CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred             CEEEEeccc-ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCe
Confidence            533221000 11121111 2 78899867888888888899999987522   22232321               2367


Q ss_pred             EEEEecCCCEEEEee-CCCcEEEEeCCCCeeeEEEEeecCC----------CCCCcEEEEEEccCCCEEEEEEeCCeEEE
Q 024451          143 TVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGE----------NEIPHVTSIAFSISGRLLFAGYSNGDCYV  211 (267)
Q Consensus       143 ~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~g~~dg~i~i  211 (267)
                      .++++|+|+++++-. .++.|+.||+.++.. ..+......          ........+++++++.++++-..++.|+.
T Consensus       327 gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~  405 (409)
T 3hrp_A          327 GMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK  405 (409)
T ss_dssp             EEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred             EEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence            899999999888887 899999999777653 333322100          01234789999999888888777888877


Q ss_pred             EeC
Q 024451          212 WDT  214 (267)
Q Consensus       212 ~d~  214 (267)
                      +++
T Consensus       406 i~~  408 (409)
T 3hrp_A          406 YAV  408 (409)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.17  E-value=1.4e-07  Score=74.78  Aligned_cols=195  Identities=13%  Similarity=0.116  Sum_probs=123.3

Q ss_pred             EEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc
Q 024451           49 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS  128 (267)
Q Consensus        49 v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~  128 (267)
                      .-+..|+|+++.++++...++.|..||..++.... +.      ....+..+.+++. ++++++.  +..|.+||.....
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~------~~~~~~~i~~~~d-G~l~v~~--~~~l~~~d~~~g~   84 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VT------MDAPVSSVALRQS-GGYVATI--GTKFCALNWKEQS   84 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EE------CSSCEEEEEEBTT-SSEEEEE--TTEEEEEETTTTE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-Ee------CCCceEEEEECCC-CCEEEEE--CCeEEEEECCCCc
Confidence            34567888777777788888999999998765422 21      2345778888864 4555543  5679999976422


Q ss_pred             cceEEeec-----cccceeEEEEecCCCEEEEeeC---------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEc
Q 024451          129 RAVRTFHG-----HEGDVNTVKFFPDGNRFGTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS  194 (267)
Q Consensus       129 ~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s  194 (267)
                        ...+..     ....++.+.++|+|+++++...         .....+|.+............     ......++|+
T Consensus        85 --~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~-----~~~pngi~~s  157 (297)
T 3g4e_A           85 --AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ-----VDISNGLDWS  157 (297)
T ss_dssp             --EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE-----ESBEEEEEEC
T ss_pred             --EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec-----cccccceEEc
Confidence              222221     1234788999999997765432         233456655432222222221     1235789999


Q ss_pred             cCCCEEEE-EEeCCeEEEEeCC--cccee--eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          195 ISGRLLFA-GYSNGDCYVWDTL--LAKVV--LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       195 ~~~~~l~~-g~~dg~i~i~d~~--~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      |+++.++. .+.++.|..||..  .+...  ..+..+ ..+.+....++++++|++.++...++.|..|+..
T Consensus       158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~-~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL-EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV  228 (297)
T ss_dssp             TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC-CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred             CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC-CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence            99987754 4567899999863  33221  011111 1234567889999999988888778889999874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.16  E-value=6.2e-09  Score=86.42  Aligned_cols=239  Identities=12%  Similarity=0.034  Sum_probs=144.9

Q ss_pred             eeeCCCCCeEEEcc----------CCCeEEEeecCCCCCCCCCCccccccc-C------CeeeEEEEEEecCCCeeEEEe
Q 024451            3 CAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRMLS-G------HKGYVSCCQYVPDEDTHLITS   65 (267)
Q Consensus         3 ~~~~~~g~~l~~~~----------~d~~v~~w~~~~~~~~~~~~~~~~~~~-~------h~~~v~~~~~~~~~~~~l~s~   65 (267)
                      ++++|||+.|..+.          .++.|.++|.....       ....+. +      ....-..+.++|++. +++.+
T Consensus       123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~-------vv~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~  194 (426)
T 3c75_H          123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL-------PIADIELPDAPRFLVGTYQWMNALTPDNK-NLLFY  194 (426)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC-------EEEEEEETTCCCCCBSCCGGGSEECTTSS-EEEEE
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc-------EEEEEECCCccccccCCCcceEEEcCCCC-EEEEE
Confidence            57899999888776          36789999986532       111110 0      001223467889875 55555


Q ss_pred             eC--CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE----eecccc
Q 024451           66 SG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT----FHGHEG  139 (267)
Q Consensus        66 ~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~  139 (267)
                      ..  +++|.+.|..+.+....+..    +..     ....+...+.+++.+.||.+.+.+.. ..+....    +.....
T Consensus       195 n~~~~~~VsVID~~t~kvv~~I~v----~g~-----~~~~p~g~~~~v~~~~dG~~~~V~~~-~~~v~~~~~~~~~v~~~  264 (426)
T 3c75_H          195 QFSPAPAVGVVDLEGKTFDRMLDV----PDC-----YHIFPASPTVFYMNCRDGSLARVDFA-DGETKVTNTEVFHTEDE  264 (426)
T ss_dssp             ECSSSCEEEEEETTTTEEEEEEEC----CSE-----EEEEEEETTEEEEEETTSSEEEEECC-TTCCEEEECCCCSCTTS
T ss_pred             ecCCCCeEEEEECCCCeEEEEEEc----CCc-----eeeccCCCcEEEEEcCCCCEEEEECC-CCcEEEEeeeeeccCCC
Confidence            43  68899999999876665532    111     11222233556667778887777763 2322211    111111


Q ss_pred             ce-eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeE--EEEeecCCC-C----CCcEEEEEEccCCCEEEEEEe------
Q 024451          140 DV-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ--VYYQQHGEN-E----IPHVTSIAFSISGRLLFAGYS------  205 (267)
Q Consensus       140 ~i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~-~----~~~v~~~~~s~~~~~l~~g~~------  205 (267)
                      ++ ..+.+.++++.++.....+.+.+.|........  .+....... .    ......+++++++..+++...      
T Consensus       265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt  344 (426)
T 3c75_H          265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK  344 (426)
T ss_dssp             CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred             ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence            21 245678888877666778899999986543211  000000000 0    001123688999887777643      


Q ss_pred             ----CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCC-eEEEeE-CCCcEEEEecCceE
Q 024451          206 ----NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGS-WDTNLKIWAFGGYR  264 (267)
Q Consensus       206 ----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~sgs-~dg~i~~w~~~~~~  264 (267)
                          ++.|.++|..+.+.+..+.     -......++|+|||+ .+++.. .++.|.++|...++
T Consensus       345 hk~~s~~VsVID~~T~kvv~~I~-----vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          345 HKAASRFVVVLNAETGERINKIE-----LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEE-----EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             ccCCCCEEEEEECCCCeEEEEEE-----CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence                3579999999988776552     122468899999999 888777 49999999986654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.14  E-value=2.7e-08  Score=79.22  Aligned_cols=195  Identities=11%  Similarity=0.120  Sum_probs=120.6

Q ss_pred             ceeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCccc--ccccC-CeeeEEEEEEecCCCeeEEEeeCC---------
Q 024451            2 TCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVS--RMLSG-HKGYVSCCQYVPDEDTHLITSSGD---------   68 (267)
Q Consensus         2 ~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~--~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d---------   68 (267)
                      .++++++ |+++++...+ .|.+||.. ..     ....  ....+ ....+.++.+.|++. +.++...+         
T Consensus        75 ~i~~~~~~g~l~v~~~~~-~l~~~d~~-g~-----~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           75 GCQCDRDANQLFVADMRL-GLLVVQTD-GT-----FEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EEEECSSSSEEEEEETTT-EEEEEETT-SC-----EEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCB
T ss_pred             eEEEecCCCcEEEEECCC-CEEEEeCC-CC-----EEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccc
Confidence            4678898 7766665544 68888865 21     1111  00111 224578899998764 45544443         


Q ss_pred             ------CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEe----CCCCeEEEEecCCCeEEEEeCCCccc-----ceEE
Q 024451           69 ------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS----GSNSRMFVSGSCDSTARLWDTRVASR-----AVRT  133 (267)
Q Consensus        69 ------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~s~~~d~~i~iwd~~~~~~-----~~~~  133 (267)
                            +.|..||.. +......      .+......++++    +....++++...++.|.+|+......     ....
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~  219 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMIQVD------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH  219 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEEEE------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE
T ss_pred             cccCCCCeEEEECCC-CCEEEec------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE
Confidence                  567777765 3322221      112234667777    65445666667788999998651111     1222


Q ss_pred             eeccc-cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE-EeCCeEEE
Q 024451          134 FHGHE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYV  211 (267)
Q Consensus       134 ~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i  211 (267)
                      +.++. .....++++++|+++++...++.|.+||.++++....+..     ....+.+++|+++++.|.++ ..++.|..
T Consensus       220 ~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~-----~~~~~~~i~~~~dg~~l~v~~~~~~~l~~  294 (314)
T 1pjx_A          220 IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC-----PFEKPSNLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC-----SSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC-----CCCCceeEEECCCCCEEEEEeCCCCeEEE
Confidence            33333 4578899999999888888889999999986655443321     11358899999999955554 45688999


Q ss_pred             EeCCc
Q 024451          212 WDTLL  216 (267)
Q Consensus       212 ~d~~~  216 (267)
                      |+...
T Consensus       295 ~~~~~  299 (314)
T 1pjx_A          295 FEWQR  299 (314)
T ss_dssp             EECSS
T ss_pred             EeCCC
Confidence            99764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.09  E-value=2.2e-07  Score=76.28  Aligned_cols=200  Identities=10%  Similarity=0.038  Sum_probs=121.4

Q ss_pred             eeeCCCCCeEEEccC--CCeEEEeecCCCCCCCCCCccccc-ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            3 CAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      ++|+|||++|..+..  +++|.++| ....       .... +.- .   .++.+.|.+...+++.+.|+.+.++|. ++
T Consensus       130 ~~~spDG~~l~v~n~~~~~~v~viD-~t~~-------~~~~~i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g  196 (373)
T 2mad_H          130 NANTPNNADLLFFQFAAGPAVGLVV-QGGS-------SDDQLLSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AG  196 (373)
T ss_pred             eEECCCCCEEEEEecCCCCeEEEEE-CCCC-------EEeEEcCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence            579999999998764  57899999 6532       2222 211 1   124455666566778888999999999 76


Q ss_pred             eeEEEeCC-ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc-cceEEeec----------cccceeEEEEe
Q 024451           80 LRTSVFGG-EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHG----------HEGDVNTVKFF  147 (267)
Q Consensus        80 ~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~----------~~~~i~~~~~~  147 (267)
                      ........ ....+.........+.+..++++... ..+.+.+.|+.... .....+..          .......+.++
T Consensus       197 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s  275 (373)
T 2mad_H          197 GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL  275 (373)
T ss_pred             cEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC
Confidence            54422110 00001111111223333344444443 56788888875321 11111110          01223447889


Q ss_pred             cCCCEEEEeeC----------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEE-eCCeEEEEeCC
Q 024451          148 PDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWDTL  215 (267)
Q Consensus       148 ~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~-~dg~i~i~d~~  215 (267)
                      |+++.+.....          ++.|.++|+.+.+.+..+...      .....+.|+|+|+ .++++. .++.|.+||..
T Consensus       276 ~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g------~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG------HDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             CCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC------CCcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            99887766543          357999999988776655221      1368999999999 777776 58999999998


Q ss_pred             ccceeee
Q 024451          216 LAKVVLN  222 (267)
Q Consensus       216 ~~~~~~~  222 (267)
                      +.+.+..
T Consensus       350 t~~vv~~  356 (373)
T 2mad_H          350 AGDQDQS  356 (373)
T ss_pred             CCCEEee
Confidence            8877654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.08  E-value=4.9e-07  Score=72.73  Aligned_cols=194  Identities=12%  Similarity=0.062  Sum_probs=120.8

Q ss_pred             EEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc
Q 024451           50 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR  129 (267)
Q Consensus        50 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~  129 (267)
                      ....|+|+++.++++...++.|..||.+++.... +.      ....+.++.+.+. ++++++. . ..|.+||..... 
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~------~~~~v~~i~~~~d-g~l~v~~-~-~gl~~~d~~~g~-  120 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA------LPFMGSALAKISD-SKQLIAS-D-DGLFLRDTATGV-  120 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE------CSSCEEEEEEEET-TEEEEEE-T-TEEEEEETTTCC-
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE------CCCcceEEEEeCC-CeEEEEE-C-CCEEEEECCCCc-
Confidence            4567888766777788788999999998775432 21      1245778888764 5565544 3 358899975432 


Q ss_pred             ceEEeecc-----ccceeEEEEecCCCEEEEeeCC----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE
Q 024451          130 AVRTFHGH-----EGDVNTVKFFPDGNRFGTGSDD----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL  200 (267)
Q Consensus       130 ~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  200 (267)
                       ...+...     ...+..+.++|+|+++++...+    ....||.+.+++. ..+...     ......++|+|+++.+
T Consensus       121 -~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~-~~~~~~-----~~~~~~i~~s~dg~~l  193 (326)
T 2ghs_A          121 -LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV-TKLFAD-----ISIPNSICFSPDGTTG  193 (326)
T ss_dssp             -EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE-EEEEEE-----ESSEEEEEECTTSCEE
T ss_pred             -EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcE-EEeeCC-----CcccCCeEEcCCCCEE
Confidence             2222211     2357899999999977655422    2344444434432 222211     1235789999999877


Q ss_pred             EEE-EeCCeEEEEeCC--cc-cee--eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          201 FAG-YSNGDCYVWDTL--LA-KVV--LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       201 ~~g-~~dg~i~i~d~~--~~-~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +.+ ..++.|++||..  .+ +..  ..+..+ .........++++++|++.++...++.|..|+..+
T Consensus       194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~-~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g  260 (326)
T 2ghs_A          194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS-TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG  260 (326)
T ss_dssp             EEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC-TTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred             EEEECCCCEEEEEEcccccCCcccCceEEEEC-CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC
Confidence            554 456899999975  33 211  011111 12234567899999999888776678899998754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.07  E-value=1.1e-07  Score=75.68  Aligned_cols=196  Identities=11%  Similarity=0.081  Sum_probs=121.7

Q ss_pred             eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC
Q 024451           46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  125 (267)
Q Consensus        46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~  125 (267)
                      ........|.|++..++++...++.|..|+.. +.. ..+.     .....+..+.+++ +++++++...++.|..|+..
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~-----~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLL-----DATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEE-----ESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEe-----CCCCccceeeECC-CCCEEEEECCCCEEEEECCC
Confidence            34456678889876677888888999999984 332 2221     1334567888876 45676666666789999874


Q ss_pred             CcccceEEeecc-----ccceeEEEEecCCCEEEE----eeC-------------CCcEEEEeCCCCeeeEEEEeecCCC
Q 024451          126 VASRAVRTFHGH-----EGDVNTVKFFPDGNRFGT----GSD-------------DGTCRLFDIRTGHQLQVYYQQHGEN  183 (267)
Q Consensus       126 ~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~  183 (267)
                       ..  ...+..+     ...++.+.++|+|+..++    |..             .+.|..+|..+++..... . .   
T Consensus       116 -g~--~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~-~---  187 (305)
T 3dr2_A          116 -GQ--AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D-L---  187 (305)
T ss_dssp             -SC--EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E-E---
T ss_pred             -CC--EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c-C---
Confidence             22  2222111     134678999999998886    332             245777777655543322 1 1   


Q ss_pred             CCCcEEEEEEccCCCEEEEEEeC------CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEE
Q 024451          184 EIPHVTSIAFSISGRLLFAGYSN------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI  257 (267)
Q Consensus       184 ~~~~v~~~~~s~~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~  257 (267)
                        .....++|+|+++.|+.+...      +.|+.||..... +.....+.....+....++++++|++.++. .+| |.+
T Consensus       188 --~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~  262 (305)
T 3dr2_A          188 --DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTG-VCV  262 (305)
T ss_dssp             --SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECC-SSE-EEE
T ss_pred             --CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEec-CCc-EEE
Confidence              235789999999988777654      789999975433 111100101112234568899999966654 444 888


Q ss_pred             EecCc
Q 024451          258 WAFGG  262 (267)
Q Consensus       258 w~~~~  262 (267)
                      |+..+
T Consensus       263 ~~~~g  267 (305)
T 3dr2_A          263 FDSDG  267 (305)
T ss_dssp             ECTTS
T ss_pred             ECCCC
Confidence            87654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.05  E-value=8.3e-08  Score=78.46  Aligned_cols=203  Identities=16%  Similarity=0.236  Sum_probs=123.9

Q ss_pred             eeeCCCCCeEEEccC--CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC-C
Q 024451            3 CAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-G   79 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~   79 (267)
                      ++|+|||++|..+..  +++|.++|.....       ....+.-- +   |..+.|.+...+++.+.||++.+.++.+ +
T Consensus       142 ~a~spDGk~lyVan~~~~~~VsVID~~t~~-------vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g  210 (386)
T 3sjl_D          142 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-------FKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEG  210 (386)
T ss_dssp             EEECTTSSEEEEEECSSSCEEEEEETTTTE-------EEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred             EEEcCCCCEEEEEEcCCCCeEEEEECCCCc-------EEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCC
Confidence            689999998887753  7899999987532       22222110 1   1223354445677888899998888876 3


Q ss_pred             eeEEEeCCccccCCccceE-EEEEeCCCCeEEEEecCCCeEEEEeCCCccc-ceEEee---------c-cccceeEEEEe
Q 024451           80 LRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFH---------G-HEGDVNTVKFF  147 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~~~~~~---------~-~~~~i~~~~~~  147 (267)
                      .........+ ......+. ...|..++++++. .+.+|.|.+.|...... ....+.         + ..+....++++
T Consensus       211 ~v~~~~~~~~-~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~  288 (386)
T 3sjl_D          211 TPEITHTEVF-HPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH  288 (386)
T ss_dssp             CCEEEECCCC-SCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred             eEEEeeccee-ccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeEC
Confidence            3221111001 11112221 2345545565443 45578999999853321 111111         0 11234457888


Q ss_pred             cCCCEEEEeeC----------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEE-eCCeEEEEeCC
Q 024451          148 PDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWDTL  215 (267)
Q Consensus       148 ~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~-~dg~i~i~d~~  215 (267)
                      |+++.+...-.          .+.|.+.|+++.+.+..+.-..      .+.++.++++++ .|++.. .++.|.++|..
T Consensus       289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~------~~~~lavs~D~~~~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH------EIDSINVSQDEKPLLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred             CCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC------CcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            98887766532          2579999999988776654322      367899999997 666654 48999999999


Q ss_pred             ccceeeecc
Q 024451          216 LAKVVLNLG  224 (267)
Q Consensus       216 ~~~~~~~~~  224 (267)
                      +++.+..+.
T Consensus       363 t~k~~~~i~  371 (386)
T 3sjl_D          363 SGEELRSVN  371 (386)
T ss_dssp             TCCEEEEEC
T ss_pred             CCcEEEEec
Confidence            888776553

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.03  E-value=1.9e-10  Score=94.41  Aligned_cols=204  Identities=10%  Similarity=0.009  Sum_probs=104.6

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG   87 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   87 (267)
                      ++..+++++.|+.|..||.....       ....+..  +.+.+..+.+++ ..+++++.|+.|+.||.++++....+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~-------~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~   77 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGS-------IKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPF   77 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCC-------EEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC-------EEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeec
Confidence            57789999999999999976422       1222222  233333334433 4677788999999999988765444321


Q ss_pred             cccc-CCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451           88 EFQS-GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD  166 (267)
Q Consensus        88 ~~~~-~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd  166 (267)
                      .... .....+    +.  .+..+++++.|+.++.||.+.+.. ...+..+.    ...++|+++.+++++.|+.|..||
T Consensus        78 ~~~~~~~~sp~----~~--~~~~v~~g~~dg~v~a~D~~tG~~-~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d  146 (369)
T 2hz6_A           78 TIPELVQASPC----RS--SDGILYMGKKQDIWYVIDLLTGEK-QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYD  146 (369)
T ss_dssp             CHHHHHTTCSC----C-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCC
T ss_pred             cCccccccCce----Ee--cCCEEEEEeCCCEEEEEECCCCcE-EEEecCCC----cccccccCCEEEEEecCCEEEEEE
Confidence            1000 000111    10  233566788899999999875443 33333322    234566788899999999999999


Q ss_pred             CCCCeeeEEEEeecCCCCCCcEEEEEEccCC---CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEE-EEEECCC
Q 024451          167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISG---RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSAD  242 (267)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~  242 (267)
                      .++++.+..+....       .....++.+.   ..+++++.+|.++.||..+++.+....     ...++. ...++++
T Consensus       147 ~~tG~~~W~~~~~~-------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-----~~~pv~~~~~~~~d  214 (369)
T 2hz6_A          147 TKTRELRWNATYFD-------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-----YASPVVAFYVWQRE  214 (369)
T ss_dssp             SSSSSCCCEEEEEE-------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-----CSSCEEEEEECTTS
T ss_pred             CCCCCEEEeEeccc-------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-----CCCceEEEEEecCC
Confidence            99987654432110       1112223322   457778899999999998887765432     233443 3345555


Q ss_pred             CC
Q 024451          243 GS  244 (267)
Q Consensus       243 ~~  244 (267)
                      |.
T Consensus       215 g~  216 (369)
T 2hz6_A          215 GL  216 (369)
T ss_dssp             SC
T ss_pred             ce
Confidence            54

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.01  E-value=3.5e-10  Score=92.81  Aligned_cols=176  Identities=15%  Similarity=0.038  Sum_probs=92.8

Q ss_pred             eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecccc
Q 024451           60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG  139 (267)
Q Consensus        60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  139 (267)
                      ..+++++.|+.|+.||..+++....+..       ..+.+..+. .++.++++++.|+.|+.||.+.... ......+..
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~   80 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE-------DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIP   80 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEEC-------CCSCCCC------CCEEECTTTCCEEEC-----CC-SEECSCCHH
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEecC-------CCceecceE-cCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCc
Confidence            4688999999999999999987766532       112222122 2345677788999999999865432 222221211


Q ss_pred             -ceeE-EEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451          140 -DVNT-VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  217 (267)
Q Consensus       140 -~i~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  217 (267)
                       .+.+ ..+. .+..+++++.|+.+..||.++++.+..+...         ....++|++..+++++.++.|+.||..++
T Consensus        81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~---------~~~~~~p~~~~v~~~~~dg~v~a~d~~tG  150 (369)
T 2hz6_A           81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA---------FADSLSPSTSLLYLGRTEYTITMYDTKTR  150 (369)
T ss_dssp             HHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSS
T ss_pred             cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC---------CcccccccCCEEEEEecCCEEEEEECCCC
Confidence             1111 1111 3456778889999999999998875443211         01345668889999999999999999887


Q ss_pred             ceeeecccccCCccceEEEEEECCCC---CeEEEeECCCcEEEEec
Q 024451          218 KVVLNLGSLQNSHEGRITCLGLSADG---SALCTGSWDTNLKIWAF  260 (267)
Q Consensus       218 ~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~sgs~dg~i~~w~~  260 (267)
                      +.......      ......+++++.   ..++.++.||.+..|+.
T Consensus       151 ~~~W~~~~------~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~  190 (369)
T 2hz6_A          151 ELRWNATY------FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDS  190 (369)
T ss_dssp             SCCCEEEE------EEECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred             CEEEeEec------ccccCccccCCccccceEEEECCCCEEEEEEC
Confidence            76543311      011223333332   45667888999999986

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.00  E-value=3.3e-08  Score=80.71  Aligned_cols=232  Identities=9%  Similarity=-0.030  Sum_probs=135.4

Q ss_pred             eeeCCCCCeEEEcc----------CCCeEEEeecCCCCCCCCCCcccccccCC-------eeeEEEEEEecCCCeeEEEe
Q 024451            3 CAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITS   65 (267)
Q Consensus         3 ~~~~~~g~~l~~~~----------~d~~v~~w~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~l~s~   65 (267)
                      ++|+|||+.+..+.          .+++|.+||.....       ..+.+.-+       ...-..+.++|++. +++.+
T Consensus        70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-------vv~~I~v~~~~~~~~g~~P~~ia~SpDGk-~lyVa  141 (368)
T 1mda_H           70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-------PIADIELPDAPRFSVGPRVHIIGNCASSA-CLLFF  141 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-------EEEEEEETTSCSCCBSCCTTSEEECTTSS-CEEEE
T ss_pred             eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC-------EEEEEECCCccccccCCCcceEEEcCCCC-EEEEE
Confidence            57999998888875          37899999987532       22222111       01234578899875 55655


Q ss_pred             eC--CCeEEE--EeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC----cccceE----E
Q 024451           66 SG--DQTCVL--WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV----ASRAVR----T  133 (267)
Q Consensus        66 ~~--d~~v~i--wd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~----~~~~~~----~  133 (267)
                      ..  +..|.+  +|..+   ...+..    +..  + .  +.+...+.+++.+.|+.+.+.+...    ..+...    .
T Consensus       142 n~~~~~~v~V~~iD~~t---v~~i~v----~~~--~-~--~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~  209 (368)
T 1mda_H          142 LFGSSAAAGLSVPGASD---DQLTKS----ASC--F-H--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA  209 (368)
T ss_dssp             ECSSSCEEEEEETTTEE---EEEEEC----SSC--C-C--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT
T ss_pred             ccCCCCeEEEEEEchhh---ceEEEC----CCc--e-E--EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeee
Confidence            43  467888  99876   222211    111  0 0  1222344566777888888888764    122110    0


Q ss_pred             eeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCC-------C-CCCcEEEEEEccCCCEEEEEEe
Q 024451          134 FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------N-EIPHVTSIAFSISGRLLFAGYS  205 (267)
Q Consensus       134 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~-~~~~v~~~~~s~~~~~l~~g~~  205 (267)
                      +.....+.   . .+++..++..+. +.+.+.|+....... .......       . .......+.++++++.++.+..
T Consensus       210 i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v-~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~  283 (368)
T 1mda_H          210 QNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATM-KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV  283 (368)
T ss_dssp             SCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEE-ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred             eeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceE-EEEEEeccccccccccccCcceeeEEcCCCCEEEEEec
Confidence            11111222   3 566666665566 899999986532111 1100000       0 0001112679999998877644


Q ss_pred             -C--------CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCe-EEEeE-CCCcEEEEecCceEe
Q 024451          206 -N--------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA-LCTGS-WDTNLKIWAFGGYRR  265 (267)
Q Consensus       206 -d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~sgs-~dg~i~~w~~~~~~~  265 (267)
                       +        +.+.++|+.+.+.+..+.     -......++|+|||+. +++.. .++.|.++|+..++.
T Consensus       284 ~~~~~~~~~~~~~~ViD~~t~~vv~~i~-----vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          284 EHSRSCLAAAENTSSVTASVGQTSGPIS-----NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             ECSSCTTSCEEEEEEEESSSCCEEECCE-----EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             cccCcccccCCCEEEEECCCCeEEEEEE-----CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence             2        356799999888765542     1225788999999984 55666 599999999876553

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.00  E-value=5.6e-07  Score=74.45  Aligned_cols=235  Identities=15%  Similarity=0.118  Sum_probs=134.0

Q ss_pred             CCCCeEE-EccCCCeEEEeecCCCCCCCCCCccccccc------C-CeeeEEEEEEecCCCeeEEEeeCC------CeEE
Q 024451            7 PTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLS------G-HKGYVSCCQYVPDEDTHLITSSGD------QTCV   72 (267)
Q Consensus         7 ~~g~~l~-~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~------~-h~~~v~~~~~~~~~~~~l~s~~~d------~~v~   72 (267)
                      +++++|+ ++..++.|.++|+....   ....+.+++.      . ....-+.+...|++  +++++..+      +.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p---~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~  167 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNP---REPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGIL  167 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCT---TSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCC---CCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEE
Confidence            6776655 46678899999985321   1112222221      1 11234456667865  56666555      7899


Q ss_pred             EEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEec-------------------CCCeEEEEeCCCcccceEE
Q 024451           73 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-------------------CDSTARLWDTRVASRAVRT  133 (267)
Q Consensus        73 iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~-------------------~d~~i~iwd~~~~~~~~~~  133 (267)
                      +.|.++.+.+..+....  +-...-..+.+++..+ .+++..                   .+..|.+||+.. .+....
T Consensus       168 vlD~~T~~v~~~~~~~~--~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~t  243 (462)
T 2ece_A          168 MLDHYSFEPLGKWEIDR--GDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHS  243 (462)
T ss_dssp             EECTTTCCEEEECCSBC--TTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEE
T ss_pred             EEECCCCeEEEEEccCC--CCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeE
Confidence            99999887666553210  1111122456676554 555553                   367999999975 344444


Q ss_pred             eecc--ccceeEEEE--ecCCCEEEEeeC------CCcEEEEeCCCCeeeE--EE--EeecCCCC-----------CCcE
Q 024451          134 FHGH--EGDVNTVKF--FPDGNRFGTGSD------DGTCRLFDIRTGHQLQ--VY--YQQHGENE-----------IPHV  188 (267)
Q Consensus       134 ~~~~--~~~i~~~~~--~~~~~~l~~~~~------d~~i~iwd~~~~~~~~--~~--~~~~~~~~-----------~~~v  188 (267)
                      +..-  ......+.|  +|+++++.++++      +++|.+|..+.++-..  .+  ........           ....
T Consensus       244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p  323 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV  323 (462)
T ss_dssp             EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred             EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence            4421  123345555  999998877664      5688877765443111  11  00000000           1235


Q ss_pred             EEEEEccCCCEEEEEEe-CCeEEEEeCCccceeeecccccCC-------c---c---ceEEEEEECCCCCeEEEeE
Q 024451          189 TSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNS-------H---E---GRITCLGLSADGSALCTGS  250 (267)
Q Consensus       189 ~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~-------~---~---~~v~~~~~~p~~~~l~sgs  250 (267)
                      ..+.+|+++++|.++.. .+.|.+||+...........+...       |   .   +.=..++++|||++|.++.
T Consensus       324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            78899999999988874 689999997522111111111111       1   0   1135688999999998877

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.97  E-value=7.4e-07  Score=69.09  Aligned_cols=203  Identities=8%  Similarity=0.058  Sum_probs=128.1

Q ss_pred             eEEEEEEecCCCeeEEEeeC--CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC
Q 024451           48 YVSCCQYVPDEDTHLITSSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  125 (267)
Q Consensus        48 ~v~~~~~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~  125 (267)
                      ....+.|+|++ .+.++.+.  ++.|++.|..+++....+..    +.......+.+.  +++++++...++.+.++|..
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l----~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~   94 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM----DDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR   94 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec----CCCcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence            35678888864 44444443  68999999999876665431    111222345554  45788888889999999987


Q ss_pred             CcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe
Q 024451          126 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  205 (267)
Q Consensus       126 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~  205 (267)
                      . .+.+..+.....  ....+.++++.++++..+++|.++|..+.+....+.-.........+..+.|. ++...+....
T Consensus        95 t-~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~  170 (266)
T 2iwa_A           95 T-LSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ  170 (266)
T ss_dssp             T-TEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             C-CcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence            4 344555532111  22345667776665556889999999987766554322111111235677777 6755555556


Q ss_pred             CCeEEEEeCCccceeeeccc--cc-----C--CccceEEEEEECCCCCe-EEEeECCCcEEEEecC
Q 024451          206 NGDCYVWDTLLAKVVLNLGS--LQ-----N--SHEGRITCLGLSADGSA-LCTGSWDTNLKIWAFG  261 (267)
Q Consensus       206 dg~i~i~d~~~~~~~~~~~~--~~-----~--~~~~~v~~~~~~p~~~~-l~sgs~dg~i~~w~~~  261 (267)
                      ++.|.+.|..+++.+..+..  +.     .  .-......++|+|+++. ++++...+.+..-++.
T Consensus       171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            78999999998887654421  10     0  01135689999999764 5566667777776653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.95  E-value=9.7e-07  Score=67.84  Aligned_cols=192  Identities=12%  Similarity=0.109  Sum_probs=121.6

Q ss_pred             eeEEEEEEecCCCeeEEEeeCCC--eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeC
Q 024451           47 GYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  124 (267)
Q Consensus        47 ~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~  124 (267)
                      .....+.|+ + +.+..+.+.++  .|+.+|+++++....+..    +....-..+.+.  ++++++....++.+.++|.
T Consensus        43 ~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l----~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~  114 (262)
T 3nol_A           43 AFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIEL----GKRYFGEGISDW--KDKIVGLTWKNGLGFVWNI  114 (262)
T ss_dssp             CEEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred             cccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEec----CCccceeEEEEe--CCEEEEEEeeCCEEEEEEC
Confidence            345667777 3 46677777766  899999999976665532    111112234444  4577788888999999998


Q ss_pred             CCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451          125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  204 (267)
Q Consensus       125 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~  204 (267)
                      ++. +.+..+.-. .  ....+.++++.++....+++|.++|..+.+....+.-.........+..+.|. +|...+...
T Consensus       115 ~t~-~~~~ti~~~-~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w  189 (262)
T 3nol_A          115 RNL-RQVRSFNYD-G--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW  189 (262)
T ss_dssp             TTC-CEEEEEECS-S--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             ccC-cEEEEEECC-C--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence            753 455555422 1  22334456776666555788999999988766554332111111234557776 676666666


Q ss_pred             eCCeEEEEeCCccceeeeccc--ccC------CccceEEEEEECCCCCeEEEeEC
Q 024451          205 SNGDCYVWDTLLAKVVLNLGS--LQN------SHEGRITCLGLSADGSALCTGSW  251 (267)
Q Consensus       205 ~dg~i~i~d~~~~~~~~~~~~--~~~------~~~~~v~~~~~~p~~~~l~sgs~  251 (267)
                      .+..|.+.|..+++.+..+..  +..      .-....+.||++|+++.|...+.
T Consensus       190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            788999999998887654321  111      11346789999998777666554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.89  E-value=3.8e-07  Score=80.99  Aligned_cols=199  Identities=11%  Similarity=0.065  Sum_probs=122.6

Q ss_pred             ceeeCCCCCeEEEccCCCe-------------EEEeecCCCCCCCCCCcccccccC-CeeeEEEEEEecCCCeeEEEeeC
Q 024451            2 TCAFSPTGQSVACGGLDSV-------------CSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSG   67 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~-------------v~~w~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~   67 (267)
                      ..+|+ ||+.|+.++.+..             |.+|++..+...   ..+...... |......+.++|++..++++.+.
T Consensus       179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~---~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~  254 (693)
T 3iuj_A          179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED---DRLVFGAIPAQHHRYVGATVTEDDRFLLISAAN  254 (693)
T ss_dssp             CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG---CEEEESCSGGGCCSEEEEEECTTSCEEEEEEES
T ss_pred             cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc---ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEcc
Confidence            45799 9999998887743             888987653211   112222333 45556788999987655555443


Q ss_pred             ---CCeEEEEeCCCCe--eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC---CeEEEEeCCCccc-ceEEeeccc
Q 024451           68 ---DQTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---STARLWDTRVASR-AVRTFHGHE  138 (267)
Q Consensus        68 ---d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d---~~i~iwd~~~~~~-~~~~~~~~~  138 (267)
                         ++.|.+||+.++.  .....      .+....... +++.++++++....+   +.|..+++..... ..+.+..|.
T Consensus       255 ~~~~~~i~~~d~~~~~~~~~~l~------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~  327 (693)
T 3iuj_A          255 STSGNRLYVKDLSQENAPLLTVQ------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER  327 (693)
T ss_dssp             SSSCCEEEEEETTSTTCCCEEEE------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred             CCCCcEEEEEECCCCCCceEEEe------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC
Confidence               3589999987652  22221      122223332 444456666665544   5788888864321 234555566


Q ss_pred             cceeEEEEecCCCEEEEeeCCC---cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC----CeEEE
Q 024451          139 GDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN----GDCYV  211 (267)
Q Consensus       139 ~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d----g~i~i  211 (267)
                      ..+.  .|+++++.|+....++   .|.+||+..+.. ..+.    ......+..+.+++++..++....+    +.++.
T Consensus       328 ~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~----~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~  400 (693)
T 3iuj_A          328 QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVA----LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYR  400 (693)
T ss_dssp             SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEEC----CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEE
T ss_pred             CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEee----cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEE
Confidence            5554  8899998887766543   689999875432 2221    1122346677788888877776665    89999


Q ss_pred             EeCCccc
Q 024451          212 WDTLLAK  218 (267)
Q Consensus       212 ~d~~~~~  218 (267)
                      ||+..++
T Consensus       401 ~d~~~g~  407 (693)
T 3iuj_A          401 FEPKSGA  407 (693)
T ss_dssp             ECTTTCC
T ss_pred             EECCCCe
Confidence            9986554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.87  E-value=2.6e-06  Score=65.54  Aligned_cols=190  Identities=7%  Similarity=0.028  Sum_probs=120.6

Q ss_pred             eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC
Q 024451           47 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV  126 (267)
Q Consensus        47 ~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~  126 (267)
                      .....+.|..  +.+.++.+.++.|+.+|+++++....+ .   . ....-..+.+.  ++++++....++.+.++|.++
T Consensus        55 ~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l---~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~T  125 (268)
T 3nok_A           55 AFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-R---L-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMP  125 (268)
T ss_dssp             CCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-E---C-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTT
T ss_pred             cccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-C---C-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCc
Confidence            3445677753  567788889999999999998655443 1   1 11111224443  467788888899999999874


Q ss_pred             cccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC
Q 024451          127 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN  206 (267)
Q Consensus       127 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d  206 (267)
                       .+.+..+.. ...-..++  ++++.|+....+++|.++|..+.+....+.-.........+..+.|. +|...+....+
T Consensus       126 -l~~~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s  200 (268)
T 3nok_A          126 -PQRERTTRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS  200 (268)
T ss_dssp             -TEEEEEEEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred             -CcEEEEEeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence             345555542 22223344  56777766666889999999988776654432222222345667776 77655555578


Q ss_pred             CeEEEEeCCccceeeeccc--c-------cCCccceEEEEEECCCCCeEEEeE
Q 024451          207 GDCYVWDTLLAKVVLNLGS--L-------QNSHEGRITCLGLSADGSALCTGS  250 (267)
Q Consensus       207 g~i~i~d~~~~~~~~~~~~--~-------~~~~~~~v~~~~~~p~~~~l~sgs  250 (267)
                      ..|.+.|..+++.+..+..  +       ...-....+.||++|+++.|...+
T Consensus       201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            8999999998877644321  1       111234679999999765554444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.83  E-value=2.8e-06  Score=70.36  Aligned_cols=200  Identities=10%  Similarity=0.097  Sum_probs=117.7

Q ss_pred             cCCCeeEEEeeCCCeEEEEeCCCC----eeEEEeC-Cccc-cCCccceEEEEEeCCCCeEEEEecCC------CeEEEEe
Q 024451           56 PDEDTHLITSSGDQTCVLWDITTG----LRTSVFG-GEFQ-SGHTADVLSVSISGSNSRMFVSGSCD------STARLWD  123 (267)
Q Consensus        56 ~~~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~-~~~~-~~~~~~i~~~~~~~~~~~~~~s~~~d------~~i~iwd  123 (267)
                      ++...+++++-.++.|.+.|+.+.    +...++. .+.. .........+...+. + +++++..+      +.+.+.|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd-G-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD-A-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS-C-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC-e-EEEEcCCCcCCCCCCeEEEEE
Confidence            555556667778899999999754    3333331 0010 000112334445543 4 66665444      7899999


Q ss_pred             CCCcccceEEeeccc---cceeEEEEecCCCEEEEee-------------------CCCcEEEEeCCCCeeeEEEEeecC
Q 024451          124 TRVASRAVRTFHGHE---GDVNTVKFFPDGNRFGTGS-------------------DDGTCRLFDIRTGHQLQVYYQQHG  181 (267)
Q Consensus       124 ~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~~~~~  181 (267)
                      .++. +.+.......   .--..+-|+|+++.+++..                   .+.+|.+||+.+++....+..  .
T Consensus       171 ~~T~-~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v--g  247 (462)
T 2ece_A          171 HYSF-EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL--G  247 (462)
T ss_dssp             TTTC-CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES--C
T ss_pred             CCCC-eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec--C
Confidence            8743 3454443211   2234688899999888874                   368999999998765554322  1


Q ss_pred             CCCCCcEEEEEE--ccCCCEEEEEEe------CCeEEEEeCCccce--eee--ccc------c---cCC---ccceEEEE
Q 024451          182 ENEIPHVTSIAF--SISGRLLFAGYS------NGDCYVWDTLLAKV--VLN--LGS------L---QNS---HEGRITCL  237 (267)
Q Consensus       182 ~~~~~~v~~~~~--s~~~~~l~~g~~------dg~i~i~d~~~~~~--~~~--~~~------~---~~~---~~~~v~~~  237 (267)
                      . .......+.|  +|+++++.++++      ++.|.+|....++.  ...  +..      +   ...   -......+
T Consensus       248 ~-~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          248 E-ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             T-TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             C-CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence            1 1112345555  999999888875      45777654322110  000  000      0   000   01346778


Q ss_pred             EECCCCCeEEEeEC-CCcEEEEecC
Q 024451          238 GLSADGSALCTGSW-DTNLKIWAFG  261 (267)
Q Consensus       238 ~~~p~~~~l~sgs~-dg~i~~w~~~  261 (267)
                      .+||||++|.++.. .+.|.+|++.
T Consensus       327 ~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          327 DISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEECS
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEec
Confidence            99999999987666 7789999974

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.81  E-value=1.3e-06  Score=77.16  Aligned_cols=240  Identities=13%  Similarity=0.111  Sum_probs=136.0

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCC-----eeeEEEEEEecCCCeeEEEee-----CCCeEEEEeCC
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-----KGYVSCCQYVPDEDTHLITSS-----GDQTCVLWDIT   77 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~s~~-----~d~~v~iwd~~   77 (267)
                      ++..++.++.|+.|..+|.....       ..-.+..+     ...+.+.-... ++..++..+     .++.|+.+|..
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~-------~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~  198 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGK-------EVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAE  198 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCC-------EEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETT
T ss_pred             ECCEEEEEcCCCEEEEEECCCCC-------EEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECC
Confidence            45677888889999999976422       11111111     01111100011 333333332     27999999999


Q ss_pred             CCeeEEEeCCcccc---------------------------CCccceEEEEEeCCCCeEEEEecCCC-------------
Q 024451           78 TGLRTSVFGGEFQS---------------------------GHTADVLSVSISGSNSRMFVSGSCDS-------------  117 (267)
Q Consensus        78 ~~~~~~~~~~~~~~---------------------------~~~~~i~~~~~~~~~~~~~~s~~~d~-------------  117 (267)
                      +++.+..+......                           +.......+.+++..+.++ .+..++             
T Consensus       199 tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~g  277 (677)
T 1kb0_A          199 TGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGG  277 (677)
T ss_dssp             TCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCC
T ss_pred             CCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCC
Confidence            99877655321100                           0000112456666555444 444332             


Q ss_pred             ------eEEEEeCCCcccceEEee--ccc-------cceeEEEEecCC---CEEEEeeCCCcEEEEeCCCCeeeEEEEee
Q 024451          118 ------TARLWDTRVASRAVRTFH--GHE-------GDVNTVKFFPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQ  179 (267)
Q Consensus       118 ------~i~iwd~~~~~~~~~~~~--~~~-------~~i~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  179 (267)
                            .|..+|.++..... .++  .|.       ....-+....+|   +.++.++.+|.+.++|.++++.+......
T Consensus       278 d~~~~~sv~AlD~~TG~~~W-~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~  356 (677)
T 1kb0_A          278 DNLYLASIVALDPDTGKYKW-HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFV  356 (677)
T ss_dssp             CCTTTTEEEEECTTTCCEEE-EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred             CCeeeEEEEEEECCCCCEEE-EEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccc
Confidence                  58888887554322 222  121       112223333467   67899999999999999999876543211


Q ss_pred             cCC------CCCCcE------------------------EEEEEccCCCEEEEEEeC-----------------------
Q 024451          180 HGE------NEIPHV------------------------TSIAFSISGRLLFAGYSN-----------------------  206 (267)
Q Consensus       180 ~~~------~~~~~v------------------------~~~~~s~~~~~l~~g~~d-----------------------  206 (267)
                      ...      ....++                        ..++++|++..+++...+                       
T Consensus       357 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~  436 (677)
T 1kb0_A          357 PVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS  436 (677)
T ss_dssp             CCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG
T ss_pred             ccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccc
Confidence            000      000000                        256789998888876542                       


Q ss_pred             --------------------CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          207 --------------------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       207 --------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                                          |.|+.||+.+++.+....     +..++....+...+..++.++.||.+++||...
T Consensus       437 ~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-----~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t  507 (677)
T 1kb0_A          437 GTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-----HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT  507 (677)
T ss_dssp             GGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-----ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-----CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence                                789999998888765542     222333344556778888899999999999743

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.79  E-value=1.3e-05  Score=64.17  Aligned_cols=243  Identities=7%  Similarity=-0.006  Sum_probs=136.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccc-----------------cccCCeeeEEEEEEecCCCeeEEE
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-----------------MLSGHKGYVSCCQYVPDEDTHLIT   64 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~-----------------~~~~h~~~v~~~~~~~~~~~~l~s   64 (267)
                      .++++++|+++.++..++.|..|+.....     .....                 ...........+++.++++. |+.
T Consensus        23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSG-----FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             CEECCTTCSSEEEECTTSEEEEECCTTTC-----EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEECCCCCc-----eEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            36788899878888888999999765321     00000                 00011234677888873344 455


Q ss_pred             eeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC-----------------CCeEEEEeCCCc
Q 024451           65 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----------------DSTARLWDTRVA  127 (267)
Q Consensus        65 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-----------------d~~i~iwd~~~~  127 (267)
                      +...+.|..+|..++.... +..............+++.+.+++++++...                 ++.|..+|....
T Consensus        97 ~d~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHATQ-LATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             EETTTEEEEECTTCEECEE-EESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             EECCCCEEEEeCCCCEEEE-ecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            5555568888877543222 2111100011235677787524566665432                 366888876432


Q ss_pred             ccceEEeeccccceeEEEEecCCCEEE-EeeCCCcEEEEeCCCCe--eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451          128 SRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDDGTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  204 (267)
Q Consensus       128 ~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~  204 (267)
                      .  ...+.........++++|+++.+. +-...+.|..|++....  ....+..  ..   . ...++++++|++.++..
T Consensus       176 ~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~---g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          176 E--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IP---N-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             E--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CS---S-EEEEEECTTSCEEEEEE
T ss_pred             E--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CC---C-CCCeEECCCCCEEEEec
Confidence            2  222221123456799999998554 44567899999987531  1222221  11   2 57789999998777765


Q ss_pred             e----------CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          205 S----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       205 ~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .          .+.|..+|.. ++.+..+..........+.++++ .++++.++...++.|..+++.
T Consensus       248 ~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          248 EELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             CcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence            5          4678888864 44433322110000123555665 467666766678888888764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.78  E-value=1.3e-05  Score=61.02  Aligned_cols=192  Identities=13%  Similarity=0.094  Sum_probs=119.3

Q ss_pred             eeEEEEEEecCCCeeEEEeeCC--CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeC
Q 024451           47 GYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  124 (267)
Q Consensus        47 ~~v~~~~~~~~~~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~  124 (267)
                      .....+.|.+  +.+..+.+.+  ..|+.+|+++++........    ....-..+.+.  +++++.....++.+.++|.
T Consensus        21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~----~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~   92 (243)
T 3mbr_X           21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVP----PPYFGAGIVAW--RDRLIQLTWRNHEGFVYDL   92 (243)
T ss_dssp             CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECC----TTCCEEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred             cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCC----CCcceeEEEEe--CCEEEEEEeeCCEEEEEEC
Confidence            4456788876  4566676665  48999999999776654321    11111234443  4678888888999999998


Q ss_pred             CCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451          125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  204 (267)
Q Consensus       125 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~  204 (267)
                      ++ .+.+..+... ..-..+  .++++.|+....+++|.++|..+.+....+.-.........+..+.+. +|...+...
T Consensus        93 ~t-l~~~~ti~~~-~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw  167 (243)
T 3mbr_X           93 AT-LTPRARFRYP-GEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW  167 (243)
T ss_dssp             TT-TEEEEEEECS-SCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             Cc-CcEEEEEeCC-CCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence            74 3445555422 222334  356665555455889999999988766554332211112245566665 666666565


Q ss_pred             eCCeEEEEeCCccceeeecc--ccc-------CCccceEEEEEECCCCCeEEEeEC
Q 024451          205 SNGDCYVWDTLLAKVVLNLG--SLQ-------NSHEGRITCLGLSADGSALCTGSW  251 (267)
Q Consensus       205 ~dg~i~i~d~~~~~~~~~~~--~~~-------~~~~~~v~~~~~~p~~~~l~sgs~  251 (267)
                      .+..|.+.|..+++.+..+.  .+.       ..-....+.+|++|+++.|...+.
T Consensus       168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            78899999999888764432  111       112346799999997666555543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.76  E-value=1.9e-06  Score=71.58  Aligned_cols=203  Identities=15%  Similarity=0.188  Sum_probs=119.0

Q ss_pred             eeeCCCCCeEEEccC--CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            3 CAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      ++|+|||++|..+..  +++|.+.|.....       ....+.-- +   +....|.+...+++.+.||.+.+.+..++.
T Consensus       182 ~~~spDGk~lyV~n~~~~~~VsVID~~t~k-------vv~~I~v~-g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~  250 (426)
T 3c75_H          182 NALTPDNKNLLFYQFSPAPAVGVVDLEGKT-------FDRMLDVP-D---CYHIFPASPTVFYMNCRDGSLARVDFADGE  250 (426)
T ss_dssp             SEECTTSSEEEEEECSSSCEEEEEETTTTE-------EEEEEECC-S---EEEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred             EEEcCCCCEEEEEecCCCCeEEEEECCCCe-------EEEEEEcC-C---ceeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence            579999999888764  6889999986521       22222110 0   123344444556677778887777775443


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-eEEee-------c---cccceeEEEEecC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFH-------G---HEGDVNTVKFFPD  149 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-~~~~~-------~---~~~~i~~~~~~~~  149 (267)
                      ........+..+.......+.+.+...+++++ ...+.+.+.|....... ...+.       .   .......+.++|+
T Consensus       251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~-s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d  329 (426)
T 3c75_H          251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWP-TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ  329 (426)
T ss_dssp             CEEEECCCCSCTTSCBCSCCEECTTTCEEEEE-BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG
T ss_pred             EEEEeeeeeccCCCceeeEeeecCCCCEEEEE-eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC
Confidence            22111000000111111123345444444444 45678888887432110 00000       0   0112234789999


Q ss_pred             CCEEEEeeC----------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEE-eCCeEEEEeCCcc
Q 024451          150 GNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWDTLLA  217 (267)
Q Consensus       150 ~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~-~dg~i~i~d~~~~  217 (267)
                      ++.+.+...          ++.|.++|+.+.+.+..+....      ....+.|+|+++ .+++.. .++.|.++|..+.
T Consensus       330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~------~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH------EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC------CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence            886655432          3579999999988776654321      367899999999 888877 5899999999988


Q ss_pred             ceeeec
Q 024451          218 KVVLNL  223 (267)
Q Consensus       218 ~~~~~~  223 (267)
                      +.+..+
T Consensus       404 kvv~tI  409 (426)
T 3c75_H          404 EELRSV  409 (426)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            877553

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.75  E-value=3.2e-05  Score=60.01  Aligned_cols=218  Identities=8%  Similarity=0.017  Sum_probs=127.3

Q ss_pred             eeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++++++ .++++-..++.|.+++.....       ..............+++.|.++.+.++-...+.|.+++.+....
T Consensus        41 i~~d~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           41 LAFDCVDKVVYWTDISEPSIGRASLHGGE-------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEESSSCC-------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             EEEecCCCEEEEEECCCCEEEEEecCCCC-------cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence            5678754 555566667899999875421       11111122234677889887665566666678999999875433


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecC--CCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCEE-EEee
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC--DSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRF-GTGS  157 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~--d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l-~~~~  157 (267)
                      ......     .......+++++.+++++++...  .+.|..++... . ....+. ........++++|+++.+ ++-.
T Consensus       114 ~~~~~~-----~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~  186 (267)
T 1npe_A          114 RVLFDT-----GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-T-NRRILAQDNLGLPNGLTFDAFSSQLCWVDA  186 (267)
T ss_dssp             EEEECS-----SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-C-CCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEEC-----CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-C-CcEEEEECCCCCCcEEEEcCCCCEEEEEEC
Confidence            222211     11345788888766777766544  46888887652 2 222221 222346789999986655 4555


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  237 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  237 (267)
                      ..+.|.++|....... .+.. .    ......++.. .+..+++...++.|..+|..+++.+..+.   .........+
T Consensus       187 ~~~~I~~~~~~g~~~~-~~~~-~----~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~---~g~~~~p~gi  256 (267)
T 1npe_A          187 GTHRAECLNPAQPGRR-KVLE-G----LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH---PHKQTRLYGI  256 (267)
T ss_dssp             TTTEEEEEETTEEEEE-EEEE-C----CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC---CSSCCCCCCE
T ss_pred             CCCEEEEEecCCCceE-EEec-C----CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc---ccccccccee
Confidence            6789999998754322 2222 1    1224566654 34444444456899999988776654442   1111124556


Q ss_pred             EECCCCC
Q 024451          238 GLSADGS  244 (267)
Q Consensus       238 ~~~p~~~  244 (267)
                      ++.|++.
T Consensus       257 ~~~~~~~  263 (267)
T 1npe_A          257 TIALSQC  263 (267)
T ss_dssp             EEECSCC
T ss_pred             eecCccC
Confidence            7777653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.70  E-value=2e-06  Score=69.56  Aligned_cols=203  Identities=10%  Similarity=0.051  Sum_probs=116.4

Q ss_pred             ceeeCCCCCeEEEccC-----CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee---CCCeEEE
Q 024451            2 TCAFSPTGQSVACGGL-----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---GDQTCVL   73 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~d~~v~i   73 (267)
                      .++++++|+++++-..     ++.|.+||+..... ............+...+..+++.|+++..+++-.   .++.|.+
T Consensus        71 gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v  149 (343)
T 2qe8_A           71 GIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIR  149 (343)
T ss_dssp             EEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEE
T ss_pred             EEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEE
Confidence            4678999987776433     57899999764210 0000000011123345677888876555556655   6789999


Q ss_pred             EeCCCCeeEEEeCCc--cc--------cC--------------CccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC---
Q 024451           74 WDITTGLRTSVFGGE--FQ--------SG--------------HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV---  126 (267)
Q Consensus        74 wd~~~~~~~~~~~~~--~~--------~~--------------~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~---  126 (267)
                      ||+.++.....+...  ..        .+              ....++.+++++....++++......+..++...   
T Consensus       150 ~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~  229 (343)
T 2qe8_A          150 VDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSN  229 (343)
T ss_dssp             EETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTC
T ss_pred             EECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcC
Confidence            999877655444220  00        00              0123567888875434444333333454444210   


Q ss_pred             cc----cceE--EeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE
Q 024451          127 AS----RAVR--TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL  200 (267)
Q Consensus       127 ~~----~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  200 (267)
                      ..    ....  ...++.+....++++++|+++++...++.|.+||..+++. ..+...   .....+..++|++++.++
T Consensus       230 ~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~---~~~~~p~~va~~~~g~l~  305 (343)
T 2qe8_A          230 LQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVTD---EKLSWTDSFNFGSDGYLY  305 (343)
T ss_dssp             TTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEEC---GGGSCEEEEEECTTSCEE
T ss_pred             CCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEEEC---CceecCCeeEECCCCcEE
Confidence            00    0000  1123444567899999999999999999999999855553 222221   123457899999988877


Q ss_pred             EEEEeCCeE
Q 024451          201 FAGYSNGDC  209 (267)
Q Consensus       201 ~~g~~dg~i  209 (267)
                      ++....+.+
T Consensus       306 v~~~~~~~~  314 (343)
T 2qe8_A          306 FDCNQLHHS  314 (343)
T ss_dssp             EEECCGGGS
T ss_pred             EEeCccccc
Confidence            777654433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.68  E-value=4.3e-05  Score=59.18  Aligned_cols=194  Identities=11%  Similarity=0.106  Sum_probs=121.3

Q ss_pred             eeeCCCCCeEEEccC--CCeEEEeecCCCCCCCCCCccccc--ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451            3 CAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRM--LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      ++|+|+|.++++.+.  +++|++.|.....       ..+.  +..+.. ...+.+.  ++...++.-.++.+.++|..+
T Consensus        26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~-------v~~~i~l~~~~f-geGi~~~--g~~lyv~t~~~~~v~viD~~t   95 (266)
T 2iwa_A           26 LVYAENDTLFESTGLYGRSSVRQVALQTGK-------VENIHKMDDSYF-GEGLTLL--NEKLYQVVWLKNIGFIYDRRT   95 (266)
T ss_dssp             EEECSTTEEEEEECSTTTCEEEEEETTTCC-------EEEEEECCTTCC-EEEEEEE--TTEEEEEETTCSEEEEEETTT
T ss_pred             EEEeCCCeEEEECCCCCCCEEEEEECCCCC-------EEEEEecCCCcc-eEEEEEe--CCEEEEEEecCCEEEEEECCC
Confidence            578898887887764  6799999986532       2222  222211 1223443  445555556789999999999


Q ss_pred             CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-c-cc---cceeEEEEecCCCEE
Q 024451           79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-G-HE---GDVNTVKFFPDGNRF  153 (267)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~-~~---~~i~~~~~~~~~~~l  153 (267)
                      .+.+..+...  .++ .  ..++.  ...+++++. .++.|.++|.... +..+.+. + +.   ...+.+.|. ++..+
T Consensus        96 ~~v~~~i~~g--~~~-g--~glt~--Dg~~l~vs~-gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~nele~~-dg~ly  165 (266)
T 2iwa_A           96 LSNIKNFTHQ--MKD-G--WGLAT--DGKILYGSD-GTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLNELEYI-NGEVW  165 (266)
T ss_dssp             TEEEEEEECC--SSS-C--CEEEE--CSSSEEEEC-SSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             CcEEEEEECC--CCC-e--EEEEE--CCCEEEEEC-CCCeEEEEECCCC-cEEEEEEECCCCcccccceeEEEE-CCEEE
Confidence            8777766422  111 1  22333  345666665 5789999998753 3344333 1 11   135678887 67666


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEEeec--------CCCCCCcEEEEEEccCCCEE-EEEEeCCeEEEEeCCc
Q 024451          154 GTGSDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLL  216 (267)
Q Consensus       154 ~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i~i~d~~~  216 (267)
                      +....++.|.+.|..+++.+..+.-..        ..........++|+|+++.+ +++...+.|+..++..
T Consensus       166 vn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          166 ANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            666678899999999998776654311        00111246899999998755 4555678888888654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.66  E-value=4.7e-06  Score=73.83  Aligned_cols=187  Identities=12%  Similarity=0.118  Sum_probs=111.3

Q ss_pred             EEEEecCCCeeEEEeeCCC-------------------eEEEEeCCCCeeEEEeCCcccc--C--CccceEEEEEeCCCC
Q 024451           51 CCQYVPDEDTHLITSSGDQ-------------------TCVLWDITTGLRTSVFGGEFQS--G--HTADVLSVSISGSNS  107 (267)
Q Consensus        51 ~~~~~~~~~~~l~s~~~d~-------------------~v~iwd~~~~~~~~~~~~~~~~--~--~~~~i~~~~~~~~~~  107 (267)
                      .+.+.|+.+ +++.++.++                   .|..||..+++.+..+......  .  ............ ++
T Consensus       239 ~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G  316 (689)
T 1yiq_A          239 SFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DG  316 (689)
T ss_dssp             CEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TT
T ss_pred             ceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CC
Confidence            466777654 577777665                   4999999999877765421100  0  111111111111 22


Q ss_pred             ---eEEEEecCCCeEEEEeCCCcccceEEee-cc---------------------------cc-----------ceeEEE
Q 024451          108 ---RMFVSGSCDSTARLWDTRVASRAVRTFH-GH---------------------------EG-----------DVNTVK  145 (267)
Q Consensus       108 ---~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~---------------------------~~-----------~i~~~~  145 (267)
                         ..++.++.+|.++++|.++... +.... .+                           ..           .-..++
T Consensus       317 ~~~~~v~~~~~~G~l~~lD~~tG~~-l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a  395 (689)
T 1yiq_A          317 KPRKVLMQAPKNGFFYVIDRATGEL-LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMS  395 (689)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCE
T ss_pred             cEEEEEEEECCCCeEEEEECCCCCE-eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcce
Confidence               3678899999999999875432 21110 00                           00           011367


Q ss_pred             EecCCCEEEEeeC---------------------------------------------CCcEEEEeCCCCeeeEEEEeec
Q 024451          146 FFPDGNRFGTGSD---------------------------------------------DGTCRLFDIRTGHQLQVYYQQH  180 (267)
Q Consensus       146 ~~~~~~~l~~~~~---------------------------------------------d~~i~iwd~~~~~~~~~~~~~~  180 (267)
                      ++|+...+++...                                             ++.|..||+.+++....+....
T Consensus       396 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~  475 (689)
T 1yiq_A          396 YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT  475 (689)
T ss_dssp             EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS
T ss_pred             ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC
Confidence            8888777765422                                             3779999999998765543211


Q ss_pred             CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCe-EEEe
Q 024451          181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA-LCTG  249 (267)
Q Consensus       181 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~sg  249 (267)
                            ......++..+..++.|+.||.|+.||.++++.+.++..-......   .+.|..+|+. +++.
T Consensus       476 ------~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~---p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          476 ------IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAA---PVTYSVDGEQYVTFM  536 (689)
T ss_dssp             ------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC---CEEEEETTEEEEEEE
T ss_pred             ------CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccC---ceEEEECCEEEEEEE
Confidence                  1122345667889999999999999999999988665321111222   3455677774 4433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.60  E-value=1.3e-05  Score=71.03  Aligned_cols=241  Identities=14%  Similarity=0.098  Sum_probs=133.3

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCccccccc-C--CeeeEEEEEEecCCCeeEEEee-----CCCeEEEEeCCCC
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-G--HKGYVSCCQYVPDEDTHLITSS-----GDQTCVLWDITTG   79 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~-~--h~~~v~~~~~~~~~~~~l~s~~-----~d~~v~iwd~~~~   79 (267)
                      .+..++.++.|+.|..+|......     .-..... .  ....+.+.-... ++..++..+     .++.|+.||..++
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~-----~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG  193 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQR-----AWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAEFGVRGYVTAYDAETG  193 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCE-----EEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred             ECCEEEEEccCCEEEEEECCCCCE-----eeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCccCCCCEEEEEECCCC
Confidence            456688888999999999754221     0000000 0  001111000011 233333322     3789999999999


Q ss_pred             eeEEEeCCcccc--------------------------CCccceEEEEEeCCCCeEEEEecCCC----------------
Q 024451           80 LRTSVFGGEFQS--------------------------GHTADVLSVSISGSNSRMFVSGSCDS----------------  117 (267)
Q Consensus        80 ~~~~~~~~~~~~--------------------------~~~~~i~~~~~~~~~~~~~~s~~~d~----------------  117 (267)
                      +.+..+...-..                          +....-..+.+++..+ ++..+..++                
T Consensus       194 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~  272 (689)
T 1yiq_A          194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNL  272 (689)
T ss_dssp             CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCT
T ss_pred             cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCce
Confidence            877655311000                          0000112456665444 455555554                


Q ss_pred             ---eEEEEeCCCcccceEEeec--cc-------cceeEEEEecCCC---EEEEeeCCCcEEEEeCCCCeeeEEEEeecC-
Q 024451          118 ---TARLWDTRVASRAVRTFHG--HE-------GDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-  181 (267)
Q Consensus       118 ---~i~iwd~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-  181 (267)
                         .|..+|.++..... .++.  |.       ..........+|+   .++.++.+|.+.++|.++++.+........ 
T Consensus       273 y~~~v~AlD~~TG~~~W-~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~  351 (689)
T 1yiq_A          273 FLSSIVAVNADTGEYVW-HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS  351 (689)
T ss_dssp             TTTEEEEEETTTCCEEE-EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred             eeeeEEEEEccCCceeE-eeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc
Confidence               38999987654333 2321  21       1112222233554   788999999999999999987632211000 


Q ss_pred             ----------------------CCCC-----------CcEEEEEEccCCCEEEEEEe-----------------------
Q 024451          182 ----------------------ENEI-----------PHVTSIAFSISGRLLFAGYS-----------------------  205 (267)
Q Consensus       182 ----------------------~~~~-----------~~v~~~~~s~~~~~l~~g~~-----------------------  205 (267)
                                            ....           ..-..++|+|+...+++...                       
T Consensus       352 w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (689)
T 1yiq_A          352 WTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQ  431 (689)
T ss_dssp             SEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCC
T ss_pred             cccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccc
Confidence                                  0000           00123688898888877643                       


Q ss_pred             ----------------------CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          206 ----------------------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       206 ----------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                                            +|.|+.||+.+++.......     ..++....+...+..++.|+.||.++.||..
T Consensus       432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-----~~~~~~g~~~tagglvf~gt~dg~l~a~D~~  504 (689)
T 1yiq_A          432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY-----VTIFNGGTLSTAGNLVFEGSADGRVIAYAAD  504 (689)
T ss_dssp             CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE-----SSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC-----CCCccCccceECCCEEEEECCCCcEEEEECC
Confidence                                  37799999988887655421     1222222344567888899999999999864

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.60  E-value=1.6e-05  Score=70.31  Aligned_cols=185  Identities=10%  Similarity=0.081  Sum_probs=110.8

Q ss_pred             EEEEecCCCeeEEEeeCCC-------------------eEEEEeCCCCeeEEEeCCcccc----CCccceEEEEEeCCCC
Q 024451           51 CCQYVPDEDTHLITSSGDQ-------------------TCVLWDITTGLRTSVFGGEFQS----GHTADVLSVSISGSNS  107 (267)
Q Consensus        51 ~~~~~~~~~~~l~s~~~d~-------------------~v~iwd~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~  107 (267)
                      .+.+.|+++ .++.+..++                   +|..+|..+++.+..+......    ........+.... ++
T Consensus       247 ~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG  324 (677)
T 1kb0_A          247 SMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AG  324 (677)
T ss_dssp             CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TT
T ss_pred             ceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CC
Confidence            456777654 566555543                   5999999999877665421100    0001111122211 23


Q ss_pred             ---eEEEEecCCCeEEEEeCCCcccceEEeecc-----------ccce------------------------eEEEEecC
Q 024451          108 ---RMFVSGSCDSTARLWDTRVASRAVRTFHGH-----------EGDV------------------------NTVKFFPD  149 (267)
Q Consensus       108 ---~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~i------------------------~~~~~~~~  149 (267)
                         ..++.++.+|.+.++|.++.+ .+..+...           ...+                        ..++++|+
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~  403 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGK-FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ  403 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred             cEeeEEEEECCCCEEEEEECCCCC-EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence               578889999999999987543 33222100           0000                        15688898


Q ss_pred             CCEEEEeeC-------------------------------------------CCcEEEEeCCCCeeeEEEEeecCCCCCC
Q 024451          150 GNRFGTGSD-------------------------------------------DGTCRLFDIRTGHQLQVYYQQHGENEIP  186 (267)
Q Consensus       150 ~~~l~~~~~-------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~  186 (267)
                      ...+++...                                           .+.|..||+.+++.+..+...  .    
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~----  477 (677)
T 1kb0_A          404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV--S----  477 (677)
T ss_dssp             TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES--S----
T ss_pred             CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC--C----
Confidence            887776543                                           278999999999876544321  1    


Q ss_pred             cEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEE
Q 024451          187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC  247 (267)
Q Consensus       187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  247 (267)
                      .+....++..+..++.++.+|.+++||..+++.+..+..   .+...-..+.+.++|+.++
T Consensus       478 ~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~---~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          478 PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT---GTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC---SSCCCSCCEEEEETTEEEE
T ss_pred             CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC---CCCcccCCEEEEeCCEEEE
Confidence            123334567788889999999999999999998876532   1211122344557776443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.60  E-value=9.4e-05  Score=57.36  Aligned_cols=231  Identities=7%  Similarity=-0.054  Sum_probs=132.6

Q ss_pred             CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCcc
Q 024451           10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF   89 (267)
Q Consensus        10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~   89 (267)
                      .+|..+.. +.|+.+++......  .......+.........+++.++++.++++-..++.|..++.........+..  
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~--~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~--   76 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMK--KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ--   76 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBC--GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT--
T ss_pred             cEEEEEcC-CeEEEEEecCcccc--cccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC--
Confidence            34555443 47888887642210  00001111112345678899987666666666778999999976543333221  


Q ss_pred             ccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC---CCcEEEEe
Q 024451           90 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFD  166 (267)
Q Consensus        90 ~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd  166 (267)
                         .......+++++.++.++++....+.|.+++..... ..............++++|++..+..+..   .+.|..++
T Consensus        77 ---~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~  152 (267)
T 1npe_A           77 ---DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (267)
T ss_dssp             ---TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             ---CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence               123467888887667788887888899999875321 11112211245688999996555444432   46888888


Q ss_pred             CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCe
Q 024451          167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA  245 (267)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  245 (267)
                      ++.. ....+..    ........+++++++..|..+. ..+.|..+|...........    .... -..++..  +..
T Consensus       153 ~dg~-~~~~~~~----~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~----~~~~-P~gi~~d--~~~  220 (267)
T 1npe_A          153 MDGT-NRRILAQ----DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE----GLQY-PFAVTSY--GKN  220 (267)
T ss_dssp             TTSC-CCEEEEC----TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE----CCCS-EEEEEEE--TTE
T ss_pred             cCCC-CcEEEEE----CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec----CCCC-ceEEEEe--CCE
Confidence            7643 2222221    1123578999999877665554 56899999986433221111    1111 2355543  444


Q ss_pred             EEEeE-CCCcEEEEecC
Q 024451          246 LCTGS-WDTNLKIWAFG  261 (267)
Q Consensus       246 l~sgs-~dg~i~~w~~~  261 (267)
                      |..+. ..+.|..++..
T Consensus       221 lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          221 LYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             EEEEETTTTEEEEEETT
T ss_pred             EEEEECCCCeEEEEeCC
Confidence            44444 45788888864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.57  E-value=0.00014  Score=57.76  Aligned_cols=224  Identities=13%  Similarity=0.079  Sum_probs=125.1

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee-CCC-eEEEEeCCCCe
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQ-TCVLWDITTGL   80 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d~-~v~iwd~~~~~   80 (267)
                      ++++++|+++++-..++.|..||....        ..... .-......+++.+++. ++++.. .++ .|..+|..++.
T Consensus        37 ia~~~~g~lyv~d~~~~~I~~~d~~g~--------~~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           37 LASAPDGTIFVTNHEVGEIVSITPDGN--------QQIHA-TVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTCC--------EEEEE-ECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSC
T ss_pred             EEECCCCCEEEEeCCCCeEEEECCCCc--------eEEEE-eCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCe
Confidence            578899998888778889988876431        11111 1123577888988765 444433 333 46666766665


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee---------ccccceeEEEEecCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---------GHEGDVNTVKFFPDGN  151 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~  151 (267)
                      .......    ........++.. .....+++...++.|..+|.......+....         ......+.+  +|+++
T Consensus       107 ~~~~~~~----~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~  179 (306)
T 2p4o_A          107 VETLLTL----PDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN  179 (306)
T ss_dssp             EEEEEEC----TTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT
T ss_pred             EEEEEeC----CCccccCccccc-CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCC
Confidence            4332211    111122333333 3445556655678888888653211111000         011123445  77876


Q ss_pred             EE-EEeeCCCcEEEEeCCC-Cee--eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc
Q 024451          152 RF-GTGSDDGTCRLFDIRT-GHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ  227 (267)
Q Consensus       152 ~l-~~~~~d~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~  227 (267)
                      .+ ++-...+.|..+|+.. ++.  ...+.. .     .....++++++|++.++-...+.|.++|.. ++... .....
T Consensus       180 ~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~-----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~-~~~~~  251 (306)
T 2p4o_A          180 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-Q-----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI-IAQAE  251 (306)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-S-----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE-EECGG
T ss_pred             EEEEEeCCCCEEEEEEeCCCCCCCccEEEec-c-----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE-Eeecc
Confidence            55 4555678999999864 321  112211 1     123567889999887777778899999964 33321 11111


Q ss_pred             CCccceEEEEEEC---CCCCeEEEeECC
Q 024451          228 NSHEGRITCLGLS---ADGSALCTGSWD  252 (267)
Q Consensus       228 ~~~~~~v~~~~~~---p~~~~l~sgs~d  252 (267)
                      . .....++++|.   |+++.|..++..
T Consensus       252 ~-~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          252 Q-GVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             G-TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             c-ccCCceEEEEecccCCCCEEEEECCC
Confidence            1 12346889998   898777665543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.55  E-value=5.3e-05  Score=58.29  Aligned_cols=179  Identities=13%  Similarity=0.096  Sum_probs=110.1

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccc-ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +.|+ ++.++++.|.+|.|+++|+....       ..+. +.+. ..--.+.+  .++.+.+..-.++.+.+||.++.+.
T Consensus        60 L~~~-~~~Ly~stG~~g~v~~iD~~Tgk-------v~~~~l~~~-~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~  128 (268)
T 3nok_A           60 LVFH-QGHFFESTGHQGTLRQLSLESAQ-------PVWMERLGN-IFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQR  128 (268)
T ss_dssp             EEEE-TTEEEEEETTTTEEEECCSSCSS-------CSEEEECTT-CCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEE
T ss_pred             EEEE-CCEEEEEcCCCCEEEEEECCCCc-------EEeEECCCC-cceeEEEE--eCCEEEEEEccCCEEEEEECCcCcE
Confidence            3455 57889999999999999987532       1111 2221 11112333  3444455555689999999999888


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec--cc---cceeEEEEecCCCEEEEe
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HE---GDVNTVKFFPDGNRFGTG  156 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~l~~~  156 (267)
                      +..+...   + .  -..++..  ..+++++. .++.|.++|..+.. ..+.+..  +.   ..++.+.|. +|..++..
T Consensus       129 ~~ti~~~---~-e--GwGLt~D--g~~L~vSd-Gs~~l~~iDp~T~~-v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv  197 (268)
T 3nok_A          129 ERTTRYS---G-E--GWGLCYW--NGKLVRSD-GGTMLTFHEPDGFA-LVGAVQVKLRGQPVELINELECA-NGVIYANI  197 (268)
T ss_dssp             EEEEECS---S-C--CCCEEEE--TTEEEEEC-SSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             EEEEeCC---C-c--eeEEecC--CCEEEEEC-CCCEEEEEcCCCCe-EEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence            7777532   1 1  1334443  45566665 47899999987533 3433321  22   234677776 77766666


Q ss_pred             eCCCcEEEEeCCCCeeeEEEEeec--------CCCCCCcEEEEEEccCCCEE-EEE
Q 024451          157 SDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLL-FAG  203 (267)
Q Consensus       157 ~~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l-~~g  203 (267)
                      ..+..|.+.|.++++.+..+.-..        ..........++++|+++.| ++|
T Consensus       198 w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          198 WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            678899999999998776554321        11122356899999976544 444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.53  E-value=3.6e-05  Score=59.18  Aligned_cols=182  Identities=15%  Similarity=0.165  Sum_probs=110.3

Q ss_pred             eeeCCCCCeEEEccCCC--eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            3 CAFSPTGQSVACGGLDS--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~--~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +.|+ ++.++.+.|.+|  .|+++|+....       ..+.+.-. ...+.....+.++.+.+..-.++.+.+||.++.+
T Consensus        48 L~~~-~~~LyestG~~g~S~v~~vD~~Tgk-------v~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           48 FFYR-NGYFYESTGLNGRSSIRKVDIESGK-------TLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEE-TTEEEEEEEETTEEEEEEECTTTCC-------EEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred             EEEE-CCEEEEECCCCCCceEEEEECCCCc-------EEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence            4566 678889998876  89999986532       22211111 1122222222344444455568899999999988


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec--cc---cceeEEEEecCCCEEEE
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HE---GDVNTVKFFPDGNRFGT  155 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~l~~  155 (267)
                      .+..+...   + .+  ..++.  ...+++++.+ ++.|.++|..+.. ....+..  ..   ..++.+.|. +|..++.
T Consensus       119 ~~~ti~~~---~-eG--~glt~--dg~~L~~SdG-s~~i~~iDp~T~~-v~~~I~V~~~g~~~~~lNELe~~-~G~lyan  187 (262)
T 3nol_A          119 QVRSFNYD---G-EG--WGLTH--NDQYLIMSDG-TPVLRFLDPESLT-PVRTITVTAHGEELPELNELEWV-DGEIFAN  187 (262)
T ss_dssp             EEEEEECS---S-CC--CCEEE--CSSCEEECCS-SSEEEEECTTTCS-EEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred             EEEEEECC---C-Cc--eEEec--CCCEEEEECC-CCeEEEEcCCCCe-EEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence            77776532   1 11  23333  3455666554 6789999987533 3333322  11   234567776 6776666


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEEeecC-------CCCCCcEEEEEEccCCCEEEEEE
Q 024451          156 GSDDGTCRLFDIRTGHQLQVYYQQHG-------ENEIPHVTSIAFSISGRLLFAGY  204 (267)
Q Consensus       156 ~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~g~  204 (267)
                      .-.+..|.+.|.++++.+..+.....       .........++|+|+++.|++.+
T Consensus       188 ~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          188 VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            66788999999999988766543211       01123468999999877666654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.49  E-value=2.2e-05  Score=62.57  Aligned_cols=216  Identities=13%  Similarity=0.080  Sum_probs=121.9

Q ss_pred             CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCcc
Q 024451           10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF   89 (267)
Q Consensus        10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~   89 (267)
                      ..+..++.++.+..+|.. ..       .......+...+.++...+++  .+..++.++.|..+|.. +.....+..  
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g~-------~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~~~~~~--  174 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-GT-------EKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEKWRFKT--  174 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-SC-------EEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SCEEEEEEC--
T ss_pred             CEEEEEecCCEEEEEcCC-CC-------EEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEeEEEec--
Confidence            345556677778888754 11       111111222233444444433  46678888999999988 654443321  


Q ss_pred             ccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCC
Q 024451           90 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT  169 (267)
Q Consensus        90 ~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~  169 (267)
                         ....+.++.... ++.+++..   +.+..+| .... ....+......+.++...+++. +..++.++.+..+|. +
T Consensus       175 ---~~~~~~~~~~d~-~g~l~v~t---~~l~~~d-~~g~-~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~  243 (330)
T 3hxj_A          175 ---NDAITSAASIGK-DGTIYFGS---DKVYAIN-PDGT-EKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-D  243 (330)
T ss_dssp             ---SSCCCSCCEECT-TCCEEEES---SSEEEEC-TTSC-EEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-T
T ss_pred             ---CCCceeeeEEcC-CCEEEEEe---CEEEEEC-CCCc-EEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-C
Confidence               122344444443 44555443   7788888 4333 3333433445677888887775 455667788888885 4


Q ss_pred             CeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEe
Q 024451          170 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  249 (267)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg  249 (267)
                      ++....+...  .   ..+..+...+++ .|..++.+|.|+.+|. .++......    .....+.++...++|++.+ |
T Consensus       244 g~~~~~~~~~--~---~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~----~~~~~~~~~~~d~~g~l~~-g  311 (330)
T 3hxj_A          244 GTEKWRFKTG--K---RIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE----TGSWIIATPVIDENGTIYF-G  311 (330)
T ss_dssp             SCEEEEEECS--S---CCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE----CSSCCCSCCEECTTCCEEE-E
T ss_pred             CCEeEEeeCC--C---CccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE----cCCccccceEEcCCCEEEE-E
Confidence            4444333211  1   112234445455 5666778889999995 444443321    1233456677777877655 7


Q ss_pred             ECCCcEEEEecC
Q 024451          250 SWDTNLKIWAFG  261 (267)
Q Consensus       250 s~dg~i~~w~~~  261 (267)
                      +.+|.+.+....
T Consensus       312 t~~G~~~~~~~~  323 (330)
T 3hxj_A          312 TRNGKFYALFNL  323 (330)
T ss_dssp             CTTSCEEEEEC-
T ss_pred             cCCCeEEEEecc
Confidence            889999988643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.48  E-value=8.6e-06  Score=65.01  Aligned_cols=217  Identities=16%  Similarity=0.113  Sum_probs=120.2

Q ss_pred             CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451            6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF   85 (267)
Q Consensus         6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~   85 (267)
                      ..+|. +..++.++.|..|| ....       .......+...+.++...+++  .+..++.+  |..+|. ++.....+
T Consensus        28 d~~g~-l~v~t~~~~l~~~d-~~g~-------~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~--l~~~d~-~g~~~~~~   93 (330)
T 3hxj_A           28 AKNGT-IYLGSSNKNLYAIN-TDGS-------VKWFFKSGEIIECRPSIGKDG--TIYFGSDK--VYAINP-DGTEKWRF   93 (330)
T ss_dssp             CTTSC-EECSSTTTTTEEEC-TTSC-------EEESSCGGGEEEECCEETTTT--EECCSSCE--EEEECC-CGGGGGGS
T ss_pred             ccCCe-EEEEcCCCEEEEEC-CCCc-------EEEEEecCCCcccceEEecCC--cEEEecCc--EEEECC-CCcEEEEE
Confidence            34554 55666788888888 4321       111222233445555555433  45556555  888885 44322211


Q ss_pred             CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEE
Q 024451           86 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF  165 (267)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw  165 (267)
                      .     ..........+.  ++. +..++.++.+..+|.. .. .......+...+.++...+++. +..++.++.+..+
T Consensus        94 ~-----~~~~~~~~~~~~--~~~-l~v~t~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~  162 (330)
T 3hxj_A           94 D-----TKKAIVSDFTIF--EDI-LYVTSMDGHLYAINTD-GT-EKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAI  162 (330)
T ss_dssp             C-----C-----CCEEEE--TTE-EEEECTTSEEEEECTT-SC-EEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEE
T ss_pred             E-----CCCCcccCceEE--CCE-EEEEecCCEEEEEcCC-CC-EEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEE
Confidence            1     011111122232  333 4567778899999976 33 3333333444566677776766 5557778999999


Q ss_pred             eCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCe
Q 024451          166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA  245 (267)
Q Consensus       166 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  245 (267)
                      |.. ++....+...     ...+.++..++++.+.++.   +.|+.+| ..++......    .....+.++...++|.+
T Consensus       163 d~~-g~~~~~~~~~-----~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~----~~~~~~~~~~~~~~g~l  228 (330)
T 3hxj_A          163 NPD-GTEKWRFKTN-----DAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFY----AGYWTVTRPAISEDGTI  228 (330)
T ss_dssp             CTT-SCEEEEEECS-----SCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEEC----CSSCCCSCCEECTTSCE
T ss_pred             CCC-CCEeEEEecC-----CCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEc----cCCcceeceEECCCCeE
Confidence            988 6654433211     1234556667777755544   8899999 5555443321    12344667777887765


Q ss_pred             EEEeECCCcEEEEecCc
Q 024451          246 LCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       246 l~sgs~dg~i~~w~~~~  262 (267)
                      .+ ++.++.+..++..+
T Consensus       229 ~v-~t~~~gl~~~~~~g  244 (330)
T 3hxj_A          229 YV-TSLDGHLYAINPDG  244 (330)
T ss_dssp             EE-EETTTEEEEECTTS
T ss_pred             EE-EcCCCeEEEECCCC
Confidence            55 56667776666433

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.46  E-value=2.3e-05  Score=69.07  Aligned_cols=245  Identities=11%  Similarity=0.125  Sum_probs=123.9

Q ss_pred             ceeeCC-CCCeEEEccCCC-----------eEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEecCCCeeEEEee-C
Q 024451            2 TCAFSP-TGQSVACGGLDS-----------VCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSS-G   67 (267)
Q Consensus         2 ~~~~~~-~g~~l~~~~~d~-----------~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~-~   67 (267)
                      .+++.| +|++++.||.+.           .+.+||.....     ......+ ..+.....++.+.+++ .+++.|+ .
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-----w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~  263 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-----VSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGND  263 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-----BCCCEEEECSCCCSSCEEEECTTS-CEEEECSSS
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc-----EEeCcccCCCCCCccccccCCCCC-CEEEeCCCC
Confidence            355667 889999987653           57788876432     1111111 1222233345556655 4666776 4


Q ss_pred             CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEec-CC-----CeEEEEeCCCcccceEEeec-----
Q 024451           68 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CD-----STARLWDTRVASRAVRTFHG-----  136 (267)
Q Consensus        68 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~-~d-----~~i~iwd~~~~~~~~~~~~~-----  136 (267)
                      +..+.+||..+..-...-.  ..  ....-.++.+. +++++++.|+ .+     ..+.+||.....  ...+..     
T Consensus       264 ~~~v~~yd~~t~~W~~~~~--~~--~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~--W~~~~~~~~~p  336 (656)
T 1k3i_A          264 AKKTSLYDSSSDSWIPGPD--MQ--VARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKT--WTSLPNAKVNP  336 (656)
T ss_dssp             TTCEEEEEGGGTEEEECCC--CS--SCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTE--EEEETTSCSGG
T ss_pred             CCceEEecCcCCceeECCC--CC--ccccccceEEe-cCCeEEEEeCcccCCcccccceEeCCCCCc--ceeCCCccccc
Confidence            5689999998764333211  11  11111233333 3567888888 34     468899986422  222210     


Q ss_pred             cccceeEEEEecCCCEEEEeeCC---------CcEEEEeCCCCeeeEEEEeecC----CCCCCcEEEEEEc-cCCCEEEE
Q 024451          137 HEGDVNTVKFFPDGNRFGTGSDD---------GTCRLFDIRTGHQLQVYYQQHG----ENEIPHVTSIAFS-ISGRLLFA  202 (267)
Q Consensus       137 ~~~~i~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~~~~s-~~~~~l~~  202 (267)
                      ....-....+..++..++.++.|         ..+..||..+............    ......-.++.|. .++++++.
T Consensus       337 ~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~  416 (656)
T 1k3i_A          337 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF  416 (656)
T ss_dssp             GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred             cccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence            00000001112334444444443         4577888876653321111100    0001122445554 36778888


Q ss_pred             EEeCC-----------eEEEEeCCccceeeec-ccccCCccceEEEEEECCCCCeEEEeECC-----------CcEEEEe
Q 024451          203 GYSNG-----------DCYVWDTLLAKVVLNL-GSLQNSHEGRITCLGLSADGSALCTGSWD-----------TNLKIWA  259 (267)
Q Consensus       203 g~~dg-----------~i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-----------g~i~~w~  259 (267)
                      |+.++           .+.+||..+.+-.... ..++  ....-.++...|++++++.|+.+           ..+.+|+
T Consensus       417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp--~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~yd  494 (656)
T 1k3i_A          417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY--FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYV  494 (656)
T ss_dssp             CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCS--SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEE
T ss_pred             eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCC--CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEc
Confidence            87543           6778887654322111 1111  11112345567899999999865           4578887


Q ss_pred             cC
Q 024451          260 FG  261 (267)
Q Consensus       260 ~~  261 (267)
                      ..
T Consensus       495 p~  496 (656)
T 1k3i_A          495 PE  496 (656)
T ss_dssp             GG
T ss_pred             CC
Confidence            53

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.42  E-value=0.00032  Score=57.14  Aligned_cols=227  Identities=12%  Similarity=0.055  Sum_probs=122.7

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG   87 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   87 (267)
                      ++..+..++.++.|..+|.....     ..-...+.+..  ...... . ++ .++.++.++.|..+|..+++....+..
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~-----~~W~~~~~~~~--~~~p~~-~-~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~  171 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGT-----VAWQTKVAGEA--LSRPVV-S-DG-LVLIHTSNGQLQALNEADGAVKWTVNL  171 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCC-----EEEEEECSSCC--CSCCEE-E-TT-EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC-----EEEEEeCCCce--EcCCEE-E-CC-EEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence            34567777888999999875421     11111111110  000111 1 22 577788899999999999876655432


Q ss_pred             ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc-cc--ee---EEEEec--CCCEEEEeeCC
Q 024451           88 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-GD--VN---TVKFFP--DGNRFGTGSDD  159 (267)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~--i~---~~~~~~--~~~~l~~~~~d  159 (267)
                      ..............+.  ++ .++.+..++.+..+|.+............. ..  +.   .+...|  .+..+..++.+
T Consensus       172 ~~~~~~~~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~  248 (376)
T 3q7m_A          172 DMPSLSLRGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYN  248 (376)
T ss_dssp             CC-----CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTT
T ss_pred             CCCceeecCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecC
Confidence            1100000000111122  23 456678889999999875443222111110 00  00   011111  24567777889


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      +.+..+|.++++.+....   .    ........  ++..+..++.+|.|+.+|..+++........   ....+.....
T Consensus       249 g~l~~~d~~tG~~~w~~~---~----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~---~~~~~~~~~~  316 (376)
T 3q7m_A          249 GNLTALDLRSGQIMWKRE---L----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL---LHRLLTSPVL  316 (376)
T ss_dssp             SCEEEEETTTCCEEEEEC---C----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT---TTSCCCCCEE
T ss_pred             cEEEEEECCCCcEEeecc---C----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc---CCCcccCCEE
Confidence            999999999887653321   1    12333332  4667888888999999999888766543211   1111111222


Q ss_pred             CCCCCeEEEeECCCcEEEEecC
Q 024451          240 SADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                        .+..|..++.+|.+..++..
T Consensus       317 --~~~~l~v~~~~g~l~~~d~~  336 (376)
T 3q7m_A          317 --YNGNLVVGDSEGYLHWINVE  336 (376)
T ss_dssp             --ETTEEEEECTTSEEEEEETT
T ss_pred             --ECCEEEEEeCCCeEEEEECC
Confidence              24677778888988888753

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.40  E-value=0.00011  Score=62.92  Aligned_cols=189  Identities=8%  Similarity=0.010  Sum_probs=116.4

Q ss_pred             CCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEe--CCCCeEEEEe-----------------cCCC
Q 024451           57 DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS--GSNSRMFVSG-----------------SCDS  117 (267)
Q Consensus        57 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~s~-----------------~~d~  117 (267)
                      ++...+++...+..|.+-|+.+.+...++...  +  ......+.+.  |.....++++                 -.++
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip--~--g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP--N--AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECS--S--CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC--C--CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence            44334445555678999999998766644211  1  1235566663  4444444432                 3355


Q ss_pred             eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC-------------------------------------
Q 024451          118 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-------------------------------------  160 (267)
Q Consensus       118 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------------------------------------  160 (267)
                      .+.+.|.... +...++.--. .-..++++|+|+++++.+.+.                                     
T Consensus       176 ~vtvID~~t~-~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          176 VFTAVDADKW-EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEEETTTT-EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             eEEEEECCCC-eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            7888888743 3444443212 346688899999988877543                                     


Q ss_pred             -cEEEEeCCC--Cee-eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccce------------eeec
Q 024451          161 -TCRLFDIRT--GHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKV------------VLNL  223 (267)
Q Consensus       161 -~i~iwd~~~--~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~------------~~~~  223 (267)
                       .|.+.|.++  ++. +..+...      .....+.++|||++++++. .+..|.++|..+.+.            ....
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v  327 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIA------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  327 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEE------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC
T ss_pred             CcEEEEeCcccCCceeEEEEecC------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc
Confidence             367777766  333 2222111      1246789999999887765 578999999876531            1111


Q ss_pred             ccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          224 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       224 ~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                          .... .-..++|+|+|....+.-.|+.|.+|++..
T Consensus       328 ----~vG~-gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          328 ----ELGL-GPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             ----BCCS-CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ----CCCC-CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence                1122 346789999995555667799999999754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.39  E-value=1.5e-05  Score=65.04  Aligned_cols=195  Identities=8%  Similarity=0.018  Sum_probs=111.9

Q ss_pred             ceeeCCCCCeEEEccC--CCeEEE--eecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451            2 TCAFSPTGQSVACGGL--DSVCSI--FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT   77 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~--d~~v~~--w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~   77 (267)
                      .++|+|||++|..+..  +..+.+  +|...       ..... ..+      |..+.|++...+++.+.|+.+.+.|++
T Consensus       128 ~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-------v~~i~-v~~------~~~~~p~g~~~~~~~~~dg~~~~vd~~  193 (368)
T 1mda_H          128 IIGNCASSACLLFFLFGSSAAAGLSVPGASD-------DQLTK-SAS------CFHIHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             SEEECTTSSCEEEEECSSSCEEEEEETTTEE-------EEEEE-CSS------CCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred             eEEEcCCCCEEEEEccCCCCeEEEEEEchhh-------ceEEE-CCC------ceEEccCCCeEEEEEcCCCCEEEEECc
Confidence            3679999999888764  467888  88743       00000 001      112235455566777888888888887


Q ss_pred             C----CeeEEEeC-CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc-cceEEee-------cc---ccce
Q 024451           78 T----GLRTSVFG-GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFH-------GH---EGDV  141 (267)
Q Consensus        78 ~----~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~-------~~---~~~i  141 (267)
                      +    ..+..... .....+ ..+.   . .+..+.++ ..+. +.+.+.|..... .....+.       .+   ....
T Consensus       194 ~~~~~~~~v~~~~t~~i~vg-~~P~---~-~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~  266 (368)
T 1mda_H          194 AAPAAAGIVGAQCTGAQNCS-SQAA---Q-ANYPGMLV-WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF  266 (368)
T ss_dssp             SSCCCCEECCCCSCTTSCBC-SCCE---E-ETTTTEEE-ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred             cccccCCeEEEEeeeeeeCC-CCcc---c-cccCCEEE-EEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcc
Confidence            6    22111000 001111 1122   2 44444443 3444 888888875321 1111110       00   1112


Q ss_pred             eEEEEecCCCEEEEeeC---------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE-EEEEE-eCCeEE
Q 024451          142 NTVKFFPDGNRFGTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL-LFAGY-SNGDCY  210 (267)
Q Consensus       142 ~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~g~-~dg~i~  210 (267)
                      ..+.++|+++.+..+..         +..+.++|+.+.+.+..+....      ....+.|+|+++. +++.. .++.|.
T Consensus       267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~------~p~gi~~s~Dg~~l~va~~~~~~~Vs  340 (368)
T 1mda_H          267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH------DSDAIIAAQDGASDNYANSAGTEVLD  340 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE------EECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC------CcceEEECCCCCEEEEEccCCCCeEE
Confidence            23789999987776432         2356699999987665433211      3678999999985 45555 489999


Q ss_pred             EEeCCccceeeec
Q 024451          211 VWDTLLAKVVLNL  223 (267)
Q Consensus       211 i~d~~~~~~~~~~  223 (267)
                      ++|+.+.+.+..+
T Consensus       341 VID~~t~kvv~~I  353 (368)
T 1mda_H          341 IYDAASDQDQSSV  353 (368)
T ss_dssp             EEESSSCEEEEEC
T ss_pred             EEECCCCcEEEEE
Confidence            9999998887655

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.37  E-value=1.1e-05  Score=69.05  Aligned_cols=222  Identities=11%  Similarity=0.022  Sum_probs=122.3

Q ss_pred             CCCCeEEEcc-CCCeEEEeecCCCCCCCCCCcccc--cccCCeeeEEEEEE-e-cCCCeeEEEee---------------
Q 024451            7 PTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSR--MLSGHKGYVSCCQY-V-PDEDTHLITSS---------------   66 (267)
Q Consensus         7 ~~g~~l~~~~-~d~~v~~w~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~-~-~~~~~~l~s~~---------------   66 (267)
                      +||++|.... .++.|.+-|+..-       ++..  .+.. ......+++ . |++ .+++.++               
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~-------~~~~ii~ip~-g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~  169 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVM-------KCDAILEIPN-AKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMED  169 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTT-------EEEEEEECSS-CCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTC
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCc-------eEeeEEeCCC-CCCCcceeeeecCCC-cEEEEecccccccCCCCccccc
Confidence            3776655544 4566888888652       2222  2221 123455665 3 654 4566553               


Q ss_pred             ---CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC---------------------------
Q 024451           67 ---GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---------------------------  116 (267)
Q Consensus        67 ---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d---------------------------  116 (267)
                         .++.+.+.|.++.+....+...   +   ...-+.+++.+...++++...                           
T Consensus       170 ~~~~~~~vtvID~~t~~v~~qI~Vg---g---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~  243 (595)
T 1fwx_A          170 VANYVNVFTAVDADKWEVAWQVLVS---G---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK  243 (595)
T ss_dssp             GGGEEEEEEEEETTTTEEEEEEEES---S---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred             ccccCceEEEEECCCCeEEEEEEeC---C---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence               3467889999987655443210   0   112233444333333332221                           


Q ss_pred             ----------CeEEEEeCCCc-ccc-eEEeeccccceeEEEEecCCCEEEEee-CCCcEEEEeCCCCeee---------E
Q 024451          117 ----------STARLWDTRVA-SRA-VRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQL---------Q  174 (267)
Q Consensus       117 ----------~~i~iwd~~~~-~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~---------~  174 (267)
                                +.|.+.|.+.. .+. .+.+.. ....+++.++|||+++++++ .+.+|.++|+.+.+..         .
T Consensus       244 ~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~  322 (595)
T 1fwx_A          244 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  322 (595)
T ss_dssp             HHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred             eccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence                      23666666531 112 233321 23468899999999876655 6789999999864210         0


Q ss_pred             EEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc----------cceeeecccccCCccce-----EEEEEE
Q 024451          175 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL----------AKVVLNLGSLQNSHEGR-----ITCLGL  239 (267)
Q Consensus       175 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~----------~~~~~~~~~~~~~~~~~-----v~~~~~  239 (267)
                      ...+ .  .-......++|+++|...++-.-|++|..||...          .+.+..+    ..|..+     -..+.+
T Consensus       323 v~~~-v--~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~ki----dV~yqpGh~~~~~g~t~  395 (595)
T 1fwx_A          323 VVAE-P--ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKL----DVHYQPGHLKTVMGETL  395 (595)
T ss_dssp             EEEC-C--BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEE----ECSSCEEEEEETTTTST
T ss_pred             eEEE-c--CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEe----ecccccccceeccceEe
Confidence            1111 1  1123468999999994445566799999999765          2222222    123222     122356


Q ss_pred             CCCCCeEEEeEC
Q 024451          240 SADGSALCTGSW  251 (267)
Q Consensus       240 ~p~~~~l~sgs~  251 (267)
                      +|||++|++...
T Consensus       396 ~~DGk~l~~~Nk  407 (595)
T 1fwx_A          396 DATNDWLVCLSK  407 (595)
T ss_dssp             TCCSSEEEEEES
T ss_pred             CCCCCEEEEcCC
Confidence            899999988654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.30  E-value=0.00059  Score=52.50  Aligned_cols=209  Identities=11%  Similarity=0.148  Sum_probs=124.0

Q ss_pred             cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEE
Q 024451           41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR  120 (267)
Q Consensus        41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~  120 (267)
                      .+.+-...+..+++.|+++.+.+....++.|...|.. +.....+..    +-......+++.+ +++++++.-.++.+.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l----~g~~D~EGIa~~~-~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL----DFVKDLETIEYIG-DNQFVISDERDYAIY   94 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC----SSCSSEEEEEECS-TTEEEEEETTTTEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec----CCCCChHHeEEeC-CCEEEEEECCCCcEE
Confidence            3445556789999999877666667778889888987 544444321    1123456677764 456666666677888


Q ss_pred             EEeCCCccc--ceEEe------eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCC---CeeeEEEEee--cCCCCCCc
Q 024451          121 LWDTRVASR--AVRTF------HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQQ--HGENEIPH  187 (267)
Q Consensus       121 iwd~~~~~~--~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~--~~~~~~~~  187 (267)
                      ++++.....  .....      ...+.....++|+|.++.|.++.+.....+|.++.   .+.+......  ........
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence            887653332  11111      12345578999999987777777665666666541   1122222110  00112234


Q ss_pred             EEEEEEccCCC-EEEEEEeCCeEEEEeCCccceeeecccccCCc------cceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          188 VTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH------EGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       188 v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      +.+++++|... +++....+..|..+|.. ++... ...+....      -..-..++|.|+|++.++ |...  .+|.|
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~-~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n--~~y~f  249 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIG-EMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN--RFYRF  249 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEE-EEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT--EEEEE
T ss_pred             ceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEE-EEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc--eEEEE
Confidence            68999998755 44555567888889965 33322 22222211      124578999999986665 5555  44543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.29  E-value=0.00058  Score=51.95  Aligned_cols=182  Identities=12%  Similarity=0.087  Sum_probs=109.7

Q ss_pred             eeeCCCCCeEEEccCCC--eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            3 CAFSPTGQSVACGGLDS--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~--~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +.|++ +.++.+.|.+|  .|+++|+....     ......+.++.. --.+.+.  ++.+.+..-.++.+.+||.++.+
T Consensus        26 L~~~~-~~LyestG~~g~S~v~~vD~~tgk-----v~~~~~l~~~~f-geGi~~~--~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           26 LFYLR-GHLYESTGETGRSSVRKVDLETGR-----ILQRAEVPPPYF-GAGIVAW--RDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             EEEET-TEEEEEECCTTSCEEEEEETTTCC-----EEEEEECCTTCC-EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             EEEEC-CEEEEECCCCCCceEEEEECCCCC-----EEEEEeCCCCcc-eeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence            35665 77888888864  89999986532     111111222211 1123333  34555555668999999999988


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec--cc---cceeEEEEecCCCEEEE
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HE---GDVNTVKFFPDGNRFGT  155 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~l~~  155 (267)
                      .+..+...    ..  -..++.  ...+++++-+ ++.|.++|..+.. ..+.+.-  +.   ..++.+.+. +|..++.
T Consensus        97 ~~~ti~~~----~~--Gwglt~--dg~~L~vSdg-s~~l~~iDp~t~~-~~~~I~V~~~g~~~~~lNeLe~~-~G~lyan  165 (243)
T 3mbr_X           97 PRARFRYP----GE--GWALTS--DDSHLYMSDG-TAVIRKLDPDTLQ-QVGSIKVTAGGRPLDNLNELEWV-NGELLAN  165 (243)
T ss_dssp             EEEEEECS----SC--CCEEEE--CSSCEEEECS-SSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred             EEEEEeCC----CC--ceEEee--CCCEEEEECC-CCeEEEEeCCCCe-EEEEEEEccCCcccccceeeEEe-CCEEEEE
Confidence            87777532    11  234443  3456666655 7789999987533 3333332  11   235667765 6766666


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEEeecC--------CCCCCcEEEEEEccCCCEEEEEE
Q 024451          156 GSDDGTCRLFDIRTGHQLQVYYQQHG--------ENEIPHVTSIAFSISGRLLFAGY  204 (267)
Q Consensus       156 ~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~g~  204 (267)
                      .-.+..|.+.|.++++.+..+.-...        .........++++|+++.|+..+
T Consensus       166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            65788999999999988766542211        01123468899999876655544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.14  E-value=0.0017  Score=51.60  Aligned_cols=164  Identities=13%  Similarity=0.068  Sum_probs=102.7

Q ss_pred             EEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccc-cCC-ccceEEEEE---eCCCCeEEEEec-----------
Q 024451           51 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ-SGH-TADVLSVSI---SGSNSRMFVSGS-----------  114 (267)
Q Consensus        51 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~~~-~~~i~~~~~---~~~~~~~~~s~~-----------  114 (267)
                      +++|.+....++++.-..++|..||...+....+...... .+. ...+..+.+   .+. ++++++..           
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTTSCC
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccccccccc
Confidence            5788886666666666899999999975533332211110 011 123467778   454 77776533           


Q ss_pred             --CCCeEEEEeCC---CcccceE-Eeeccc-----------cceeEEEEecCCCEEEEeeCC-CcEEEEeCCCCeeeEEE
Q 024451          115 --CDSTARLWDTR---VASRAVR-TFHGHE-----------GDVNTVKFFPDGNRFGTGSDD-GTCRLFDIRTGHQLQVY  176 (267)
Q Consensus       115 --~d~~i~iwd~~---~~~~~~~-~~~~~~-----------~~i~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~  176 (267)
                        .+..|..+|+.   ....... .+....           ..+..++..++|+..++++.- +.|...+.+.. ....+
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~  174 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTF  174 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeee
Confidence              25779999987   3332211 111111           247889999999999988877 78777776543 33333


Q ss_pred             EeecC-CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451          177 YQQHG-ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  216 (267)
Q Consensus       177 ~~~~~-~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~  216 (267)
                      ..... .........++++|++..|++....|.|.-+|+..
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            22211 11223467899999999998887799999999774

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.11  E-value=0.00027  Score=62.31  Aligned_cols=230  Identities=13%  Similarity=0.102  Sum_probs=115.5

Q ss_pred             eeeCCCCCeEEEccC-CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee-CC-----CeEEEEe
Q 024451            3 CAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GD-----QTCVLWD   75 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~-d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d-----~~v~iwd   75 (267)
                      .++.++|++++.||. +..+.+||.....     ......+...... .++...+++ .+++.|+ .+     ..+.+||
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~-----W~~~~~~~~~R~~-~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd  320 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDS-----WIPGPDMQVARGY-QSSATMSDG-RVFTIGGSWSGGVFEKNGEVYS  320 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTE-----EEECCCCSSCCSS-CEEEECTTS-CEEEECCCCCSSSCCCCEEEEE
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCc-----eeECCCCCccccc-cceEEecCC-eEEEEeCcccCCcccccceEeC
Confidence            356789999999994 5689999976421     0000111111111 233444555 4566666 44     5689999


Q ss_pred             CCCCeeEEEeC---CccccCCccceEEEEEeCCCCeEEEEecCC---------CeEEEEeCCCcccceEEeecccc----
Q 024451           76 ITTGLRTSVFG---GEFQSGHTADVLSVSISGSNSRMFVSGSCD---------STARLWDTRVASRAVRTFHGHEG----  139 (267)
Q Consensus        76 ~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~----  139 (267)
                      ..+..-...-.   ..........+    + ..++++++.++.+         ..+..||..... .......+..    
T Consensus       321 ~~t~~W~~~~~~~~~p~~~~~~~~~----~-~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~-w~~~~~~~~~~~~~  394 (656)
T 1k3i_A          321 PSSKTWTSLPNAKVNPMLTADKQGL----Y-RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG-DVKSAGKRQSNRGV  394 (656)
T ss_dssp             TTTTEEEEETTSCSGGGCCCCTTGG----G-TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC-EEEEEEECEETTEE
T ss_pred             CCCCcceeCCCccccccccccccce----e-ecCCceEEEECCCCcEEEecCccceeeeecCCcc-eeecCCcccccccc
Confidence            98765333210   00000000000    0 0123333444333         356778876432 1122211111    


Q ss_pred             -----ceeEEEEec-CCCEEEEeeCCC-----------cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE
Q 024451          140 -----DVNTVKFFP-DGNRFGTGSDDG-----------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  202 (267)
Q Consensus       140 -----~i~~~~~~~-~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  202 (267)
                           .-.++.|.. +++.++.|+.++           .+.+||..+.+-.... . ........-.+.+..+++++++.
T Consensus       395 ~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~-~~mp~~R~~~~~~~l~~g~i~v~  472 (656)
T 1k3i_A          395 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-S-NGLYFARTFHTSVVLPDGSTFIT  472 (656)
T ss_dssp             CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-T-TCCSSCCBSCEEEECTTSCEEEE
T ss_pred             CCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-c-CCCCCCcccCCeEECCCCCEEEE
Confidence                 123444433 677888887543           6778887765432211 0 01111111234456689999999


Q ss_pred             EEeC-----------CeEEEEeCCcccee--eecccccCCccceEEEEEECCCCCeEEEeEC
Q 024451          203 GYSN-----------GDCYVWDTLLAKVV--LNLGSLQNSHEGRITCLGLSADGSALCTGSW  251 (267)
Q Consensus       203 g~~d-----------g~i~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~  251 (267)
                      |+.+           ..+.+||..+.+-.  ..+......|    .+..+.|+|++++.|+.
T Consensus       473 GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~h----s~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          473 GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYH----SISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTT----EEEEECTTSCEEEEECC
T ss_pred             CCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccc----cHhhcCCCcEEEecCCC
Confidence            8754           46889997654321  1111111223    23445799999999985

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.11  E-value=0.0023  Score=51.96  Aligned_cols=227  Identities=11%  Similarity=0.069  Sum_probs=123.0

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCC-------eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      ++..+..++.++.|..+|.....     ..-...+...       ...+.+.-.. .+ ..++.++.++.|..+|..+++
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~v~v~~~~g~l~a~d~~tG~  124 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGK-----EIWSVSLAEKDGWFSKEPALLSGGVTV-SG-GHVYIGSEKAQVYALNTSDGT  124 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCC-----EEEEEECCC---CCSCCCCCEEEEEEE-ET-TEEEEEETTSEEEEEETTTCC
T ss_pred             ECCEEEEEcCCCeEEEEEccCCc-----eeeeecCccccccccccCcccccCceE-eC-CEEEEEcCCCEEEEEECCCCC
Confidence            45567777888899999875422     1001111100       1222221111 23 357788899999999999987


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccce-----eEEEEecCCCEEEE
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV-----NTVKFFPDGNRFGT  155 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~  155 (267)
                      ....+....     .......+.  ++ .++.++.++.|..+|.+.... .-.........     ......  +..++.
T Consensus       125 ~~W~~~~~~-----~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~~~~~~~~~~--~~~v~~  193 (376)
T 3q7m_A          125 VAWQTKVAG-----EALSRPVVS--DG-LVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSLRGESAPTTA--FGAAVV  193 (376)
T ss_dssp             EEEEEECSS-----CCCSCCEEE--TT-EEEEECTTSEEEEEETTTCCE-EEEEECCC-----CCCCCCEEE--TTEEEE
T ss_pred             EEEEEeCCC-----ceEcCCEEE--CC-EEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceeecCCCCcEEE--CCEEEE
Confidence            665443211     001111122  23 456677889999999875443 22222211110     112222  456778


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEEeecCCCC--CCcEEEEEEc--cCCCEEEEEEeCCeEEEEeCCccceeeecccccCCcc
Q 024451          156 GSDDGTCRLFDIRTGHQLQVYYQQHGENE--IPHVTSIAFS--ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE  231 (267)
Q Consensus       156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~v~~~~~s--~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~  231 (267)
                      ++.++.+..+|.++++.+...........  ...+..+.-.  ..+..+.+++.+|.++.+|..+++.......      
T Consensus       194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~------  267 (376)
T 3q7m_A          194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL------  267 (376)
T ss_dssp             CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC------
T ss_pred             EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC------
Confidence            88899999999998877644322110000  0000000001  1246777777899999999988876654321      


Q ss_pred             ceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          232 GRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       232 ~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      .....+..  ++..+..++.++.+..++.
T Consensus       268 ~~~~~~~~--~~~~l~~~~~~g~l~~~d~  294 (376)
T 3q7m_A          268 GSVNDFIV--DGNRIYLVDQNDRVMALTI  294 (376)
T ss_dssp             CCEEEEEE--ETTEEEEEETTCCEEEEET
T ss_pred             CCCCCceE--ECCEEEEEcCCCeEEEEEC
Confidence            12233333  3556677778888888875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.08  E-value=0.0024  Score=50.84  Aligned_cols=186  Identities=10%  Similarity=0.019  Sum_probs=106.7

Q ss_pred             EEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe-CCccc-------------cCCccceEEEEEeCCCCeEEEEecCC
Q 024451           51 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF-GGEFQ-------------SGHTADVLSVSISGSNSRMFVSGSCD  116 (267)
Q Consensus        51 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~-------------~~~~~~i~~~~~~~~~~~~~~s~~~d  116 (267)
                      .+.+.+++ .+++++..++.|..||..++...... .....             ......+..+++.+.+++++++... 
T Consensus        23 ~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~-  100 (322)
T 2fp8_A           23 SFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY-  100 (322)
T ss_dssp             CEECCTTC-SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT-
T ss_pred             EEEEcCCC-CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC-
Confidence            45677754 45777888899999998765332211 10000             0011246778887535666655443 


Q ss_pred             CeEEEEeCCCcccceEEeec-----cccceeEEEEec-CCCEEEEeeC-----------------CCcEEEEeCCCCeee
Q 024451          117 STARLWDTRVASRAVRTFHG-----HEGDVNTVKFFP-DGNRFGTGSD-----------------DGTCRLFDIRTGHQL  173 (267)
Q Consensus       117 ~~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~~~-~~~~l~~~~~-----------------d~~i~iwd~~~~~~~  173 (267)
                      ..+..+|....  ....+..     .....+.+++.+ +|+..++-..                 ++.|..+|..+++..
T Consensus       101 ~~i~~~d~~~g--~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  178 (322)
T 2fp8_A          101 YHLSVVGSEGG--HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT  178 (322)
T ss_dssp             TEEEEECTTCE--ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred             CCEEEEeCCCC--EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence            44778876422  1222211     112367899999 8887776432                 367888887766532


Q ss_pred             EEEEeecCCCCCCcEEEEEEccCCCEEEEE-EeCCeEEEEeCCccce--eeecccccCCccceEEEEEECCCCCeEEEeE
Q 024451          174 QVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLLAKV--VLNLGSLQNSHEGRITCLGLSADGSALCTGS  250 (267)
Q Consensus       174 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs  250 (267)
                      .. ....     .....++++++++.|..+ ..++.|+.|+......  ...+..    ..+ -..+++.++|++.++..
T Consensus       179 ~~-~~~~-----~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~----~~g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          179 LL-LKEL-----HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK----IPN-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             EE-EEEE-----SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE----CSS-EEEEEECTTSCEEEEEE
T ss_pred             Ee-ccCC-----ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe----CCC-CCCeEECCCCCEEEEec
Confidence            22 1111     124678999999866655 4568999999764211  111111    112 56789999998777654


Q ss_pred             C
Q 024451          251 W  251 (267)
Q Consensus       251 ~  251 (267)
                      .
T Consensus       248 ~  248 (322)
T 2fp8_A          248 E  248 (322)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.01  E-value=0.0021  Score=55.65  Aligned_cols=138  Identities=16%  Similarity=0.091  Sum_probs=78.5

Q ss_pred             eEEEEeCCCcccceEEee--cccc----ceeE---EEEecCCC---EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCC--
Q 024451          118 TARLWDTRVASRAVRTFH--GHEG----DVNT---VKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN--  183 (267)
Q Consensus       118 ~i~iwd~~~~~~~~~~~~--~~~~----~i~~---~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--  183 (267)
                      .|..+|.++... +-.++  .|..    .+..   +...++|+   .++.++.+|.+.++|.++++.+.........+  
T Consensus       273 ~v~Ald~~tG~~-~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMA-KWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCE-EEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcE-EEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            588888875443 22222  1211    1111   22224674   57778899999999999998765432111000  


Q ss_pred             ------CCCcE--------------------------EEEEEccCCCEEEEEEe--------------------------
Q 024451          184 ------EIPHV--------------------------TSIAFSISGRLLFAGYS--------------------------  205 (267)
Q Consensus       184 ------~~~~v--------------------------~~~~~s~~~~~l~~g~~--------------------------  205 (267)
                            ...++                          ..++++|+...+++...                          
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                  00011                          24578888777776543                          


Q ss_pred             -----------CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          206 -----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       206 -----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                                 +|.|+.||..+++.......     ..++.+..+...+..+..++.||.+..||..
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~-----~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~  493 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE-----KFAAWGGTLYTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEE-----SSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecC-----CCCccceeEEECCCEEEEEcCCCeEEEEECC
Confidence                       47889999888776654321     1111111112235667778899999999864

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.01  E-value=0.0019  Score=57.07  Aligned_cols=157  Identities=15%  Similarity=0.207  Sum_probs=92.9

Q ss_pred             eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceE-EEEEeCCCCeEEEEec-----CCCeEEEEeCCCcccceEEe
Q 024451           61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGS-----CDSTARLWDTRVASRAVRTF  134 (267)
Q Consensus        61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~s~~-----~d~~i~iwd~~~~~~~~~~~  134 (267)
                      .++.++.|+.|..+|..+++.+..+...... ....+. +..+.  ++.+++..+     .++.|..+|.++.....+..
T Consensus       119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPA-KPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSCTT-SSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCCEeeeeccCCCC-CcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            5777889999999999999877655321000 000110 11111  344444322     25889999987654333221


Q ss_pred             e-c-c----------------------------ccceeEEEEecCCCEEEEeeCCC-------------------cEEEE
Q 024451          135 H-G-H----------------------------EGDVNTVKFFPDGNRFGTGSDDG-------------------TCRLF  165 (267)
Q Consensus       135 ~-~-~----------------------------~~~i~~~~~~~~~~~l~~~~~d~-------------------~i~iw  165 (267)
                      . . .                            ......+++.|..+.++.++.++                   .|.-+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            1 0 0                            01112468888888888877665                   39999


Q ss_pred             eCCCCeeeEEEEeecCCCC----CCcEEEEEEccCCC---EEEEEEeCCeEEEEeCCcccee
Q 024451          166 DIRTGHQLQVYYQQHGENE----IPHVTSIAFSISGR---LLFAGYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       166 d~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~---~l~~g~~dg~i~i~d~~~~~~~  220 (267)
                      |.++++....+...+....    ..+.....+..+++   .++.++.+|.++++|..+++.+
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            9999987765543211100    01222223334665   6888899999999999888776

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.00  E-value=0.00099  Score=58.84  Aligned_cols=240  Identities=13%  Similarity=0.111  Sum_probs=127.2

Q ss_pred             CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCC--eeeEEEEEEecCCCeeEEEee------CCCeEEEEeCCCCe
Q 024451            9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH--KGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGL   80 (267)
Q Consensus         9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~   80 (267)
                      +..++.++.|+.|..+|......     .-.......  ...+.+--... ++. ++.+.      .++.|..+|..+++
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~-----~W~~~~~~~~~~~~~~~~P~v~-~~~-v~vg~~~~~~~~~g~v~a~D~~tG~  189 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKA-----IWSQQTTDPAKPYSITGAPRVV-KGK-VIIGNGGAEYGVRGFVSAYDADTGK  189 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCE-----EEEEECSCTTSSCBCCSCCEEE-TTE-EEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCE-----eeeeccCCCCCcceecCCCEEE-CCE-EEEeCCCCCcCCCCEEEEEECCCCc
Confidence            45677788899999998754220     000000000  00111000001 333 44333      26899999999998


Q ss_pred             eEEEeCCccccC--------------------------CccceEEEEEeCCCCeEEEEecCCC-----------------
Q 024451           81 RTSVFGGEFQSG--------------------------HTADVLSVSISGSNSRMFVSGSCDS-----------------  117 (267)
Q Consensus        81 ~~~~~~~~~~~~--------------------------~~~~i~~~~~~~~~~~~~~s~~~d~-----------------  117 (267)
                      .+..+.......                          ....-..+.+++..+ ++..+..++                 
T Consensus       190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~  268 (668)
T 1kv9_A          190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLY  268 (668)
T ss_dssp             EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCcee
Confidence            776653210000                          000111355665444 444444444                 


Q ss_pred             --eEEEEeCCCcccceEEeec-cc-------cceeEEEEecCCC---EEEEeeCCCcEEEEeCCCCeeeEEEEeec----
Q 024451          118 --TARLWDTRVASRAVRTFHG-HE-------GDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQH----  180 (267)
Q Consensus       118 --~i~iwd~~~~~~~~~~~~~-~~-------~~i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----  180 (267)
                        .|..+|.++.......-.. |.       .+.....+..+|+   .++.++.+|.+.++|.++++.+.......    
T Consensus       269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  348 (668)
T 1kv9_A          269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA  348 (668)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred             eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence              4888888765433222111 22       1222223334665   68899999999999999998763321100    


Q ss_pred             ---CCCCCC------------------------cEEEEEEccCCCEEEEEE-----------------------------
Q 024451          181 ---GENEIP------------------------HVTSIAFSISGRLLFAGY-----------------------------  204 (267)
Q Consensus       181 ---~~~~~~------------------------~v~~~~~s~~~~~l~~g~-----------------------------  204 (267)
                         ......                        .-..++++|+...+.+..                             
T Consensus       349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  428 (668)
T 1kv9_A          349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA  428 (668)
T ss_dssp             EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred             cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence               000000                        001257788777665432                             


Q ss_pred             -------eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          205 -------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       205 -------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                             .+|.|+.||+.+++.......     ..+.....+...+.+++.|+.||.++.|+..
T Consensus       429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~-----~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~  487 (668)
T 1kv9_A          429 TDVPAAVVSGALLAWDPVKQKAAWKVPY-----PTHWNGGTLSTAGNLVFQGTAAGQMHAYSAD  487 (668)
T ss_dssp             CCCCGGGCEEEEEEEETTTTEEEEEEEE-----SSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             CCCCCCCccceEEEEeCCCCcEEEEccC-----CCCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence                   237899999988887654421     1122222233457788889999999999864

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.94  E-value=0.011  Score=53.37  Aligned_cols=204  Identities=12%  Similarity=0.079  Sum_probs=119.8

Q ss_pred             eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc--cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEe
Q 024451           46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE--FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD  123 (267)
Q Consensus        46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd  123 (267)
                      ...|+++...+++.  |..|+.+ -|.+||..++.........  ...-....|.++.... ++.+. .|+.++-|..++
T Consensus       262 ~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~lW-igt~~~Gl~~~~  336 (795)
T 4a2l_A          262 SNYIRSLAMDSQNR--LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QGGMW-LGTYFGGLNYYH  336 (795)
T ss_dssp             CSBEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TSCEE-EEESSSCEEEEC
T ss_pred             CCeEEEEEEcCCCC--EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-CcCEE-EEECCCCeEEeC
Confidence            35688888777554  4445555 4888998776533322110  0011235688887775 44444 455666788887


Q ss_pred             CCCcccceEEeec-------cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeec-C---CCCCCcEEEEE
Q 024451          124 TRVASRAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-G---ENEIPHVTSIA  192 (267)
Q Consensus       124 ~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~---~~~~~~v~~~~  192 (267)
                      ....  ....+..       ....|.++...++|++ -.|+.++-+..||..+++- ..+.... .   ......|.+++
T Consensus       337 ~~~~--~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~  412 (795)
T 4a2l_A          337 PIRN--RFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRF-TSYTLQEDESARGIGSNNIKAVY  412 (795)
T ss_dssp             GGGG--SSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCE-EEECCC------CCSCSCEEEEE
T ss_pred             CCcc--cceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcE-EEEecCCCCcccCCCCccEEEEE
Confidence            6422  1222211       2345888888887764 4577777899999876542 2221111 0   01124688998


Q ss_pred             EccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          193 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       193 ~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      .++++..|-.|+.++.|..||..+++...-...........|.++...++|++.+.. .+| +..|+.
T Consensus       413 ~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~  478 (795)
T 4a2l_A          413 VDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNP  478 (795)
T ss_dssp             EETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEET
T ss_pred             EcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeC
Confidence            888888566677777899999776543221110011234578999999888876643 444 555654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.88  E-value=0.0066  Score=49.05  Aligned_cols=196  Identities=5%  Similarity=-0.043  Sum_probs=115.4

Q ss_pred             eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc
Q 024451           48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  127 (267)
Q Consensus        48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~  127 (267)
                      ....++|.+.++.++.+-...+.|..++++..........     .......+++.+.+++++.+-...+.|.+.+... 
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-----~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG-  147 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-----GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG-  147 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-----SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC-----CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC-
Confidence            3678899887666555666678899999876543333221     1123456777766778888888888999998753 


Q ss_pred             ccceEEeeccccceeEEEEecCCCE-EEEeeCC-CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-
Q 024451          128 SRAVRTFHGHEGDVNTVKFFPDGNR-FGTGSDD-GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-  204 (267)
Q Consensus       128 ~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-  204 (267)
                      ......+.........++++|.+.. +++-... +.|...+++... ...+..    ........+++++++..|..+. 
T Consensus       148 ~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~----~~~~~PnGla~d~~~~~lY~aD~  222 (349)
T 3v64_C          148 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIAD----THLFWPNGLTIDYAGRRMYWVDA  222 (349)
T ss_dssp             CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCC----SSCSCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEE----CCCCCcceEEEeCCCCEEEEEEC
Confidence            2222222223345688999986554 4444444 788888876432 222111    1223568999998777665554 


Q ss_pred             eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          205 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       205 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      ..+.|..+|....... .+..   .....-..+++ ..+.+..+-...+.|..++
T Consensus       223 ~~~~I~~~~~dG~~~~-~~~~---~~~~~P~giav-~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          223 KHHVIERANLDGSHRK-AVIS---QGLPHPFAITV-FEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             TTTEEEEEETTSCSCE-EEEC---SSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCCceE-EEEe---CCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence            4578999986532211 1110   11122355666 3444445544556666665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.86  E-value=0.0052  Score=47.22  Aligned_cols=170  Identities=11%  Similarity=0.085  Sum_probs=102.8

Q ss_pred             CCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q 024451           92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG  170 (267)
Q Consensus        92 ~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  170 (267)
                      +-...+..+++++..+.++++...++.|...|..  .+..+.+. +-......+++.+++.++++.-.++.+.++++...
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            4445688899998777788878888899988875  34444442 11245788899888877666556778888887654


Q ss_pred             eeeEEEEee---c-CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc---cceeeeccc---ccCCccceEEEEEEC
Q 024451          171 HQLQVYYQQ---H-GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL---AKVVLNLGS---LQNSHEGRITCLGLS  240 (267)
Q Consensus       171 ~~~~~~~~~---~-~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~---~~~~~~~~~---~~~~~~~~v~~~~~~  240 (267)
                      ..+......   . ..........++|+|.++.|.++.......+|....   ...+.....   ....+...+.+++++
T Consensus       102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d  181 (255)
T 3qqz_A          102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN  181 (255)
T ss_dssp             CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred             CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence            432211111   1 011223468999999998887777665545554321   000000000   001123456889999


Q ss_pred             CC-CCeEEEeECCCcEEEEecCce
Q 024451          241 AD-GSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       241 p~-~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      |. +++++.....+.+..++..|.
T Consensus       182 p~tg~lliLS~~s~~L~~~d~~g~  205 (255)
T 3qqz_A          182 QQKNTLLVLSHESRALQEVTLVGE  205 (255)
T ss_dssp             TTTTEEEEEETTTTEEEEECTTCC
T ss_pred             CCCCeEEEEECCCCeEEEEcCCCC
Confidence            86 445555566677777776654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.85  E-value=0.0082  Score=49.21  Aligned_cols=196  Identities=5%  Similarity=-0.045  Sum_probs=115.8

Q ss_pred             eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc
Q 024451           48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  127 (267)
Q Consensus        48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~  127 (267)
                      ....++|.+.++.++++-...+.|..++++.......+...     ......+++.+..+.++++-...+.|.+.++.. 
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-----~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg-  190 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-----LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG-  190 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS-----CSCCCCEEEETTTTEEEEEETTTTEEEECBTTS-
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC-----CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC-
Confidence            46688999866666666667788999998866443333211     122345677766777888888788898888753 


Q ss_pred             ccceEEeeccccceeEEEEecCCCEEE-EeeCC-CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-
Q 024451          128 SRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDD-GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-  204 (267)
Q Consensus       128 ~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-  204 (267)
                      ......+.........++++|.+..|. +-... +.|..++++.... ..+..    ........+++++++..|..+. 
T Consensus       191 ~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~----~~~~~PnGlavd~~~~~lY~aD~  265 (386)
T 3v65_B          191 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIAD----THLFWPNGLTIDYAGRRMYWVDA  265 (386)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEEC----SSCSCEEEEEEEGGGTEEEEEET
T ss_pred             CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEEEE----CCCCCeeeEEEeCCCCEEEEEEC
Confidence            222222222234568899998665544 43344 6788888764332 22221    1123468999998776665554 


Q ss_pred             eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          205 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       205 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      ..+.|..+|....... .+.   ......-..+++ ..+.++.+-...+.|..++
T Consensus       266 ~~~~I~~~d~dG~~~~-~~~---~~~~~~P~giav-~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          266 KHHVIERANLDGSHRK-AVI---SQGLPHPFAITV-FEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             TTTEEEEECTTSCSCE-EEE---CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCCeeE-EEE---ECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence            4578999986532211 111   011123356666 3455555555566777765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.84  E-value=0.015  Score=52.30  Aligned_cols=244  Identities=9%  Similarity=0.038  Sum_probs=134.7

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT   82 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   82 (267)
                      +...++|.+.+.. .+ -|.+|+.....-..-.........-....|.++...+++.  |-.|+.++-|..|+..+....
T Consensus       268 i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~  343 (795)
T 4a2l_A          268 LAMDSQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFK  343 (795)
T ss_dssp             EEECTTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSSE
T ss_pred             EEEcCCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccce
Confidence            4455677755544 33 4778875432100000000000011235688888777653  556777777888887654322


Q ss_pred             EEeCCccc-cCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee---------ccccceeEEEEecCCCE
Q 024451           83 SVFGGEFQ-SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---------GHEGDVNTVKFFPDGNR  152 (267)
Q Consensus        83 ~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~  152 (267)
                      ........ .-....|.++.... ++.+. .|+.++-|..|+....  ....+.         .....|.++...++++.
T Consensus       344 ~~~~~~~~~~l~~~~V~~i~~d~-~g~lW-iGt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~  419 (795)
T 4a2l_A          344 NIRNIPYKNSLSDNVVSCIVEDK-DKNLW-IGTNDGGLNLYNPITQ--RFTSYTLQEDESARGIGSNNIKAVYVDEKKSL  419 (795)
T ss_dssp             EECCCTTSSSCSCSSEEEEEECT-TSCEE-EEESSSCEEEECTTTC--CEEEECCC------CCSCSCEEEEEEETTTTE
T ss_pred             EEcCCCCCCCCCCCeeEEEEECC-CCCEE-EEECCCCeEEEcCCCC--cEEEEecCCCCcccCCCCccEEEEEEcCCCCE
Confidence            11110000 01234578887764 44444 4666667888887532  222221         01356888888888874


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccc---cCC
Q 024451          153 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL---QNS  229 (267)
Q Consensus       153 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~---~~~  229 (267)
                      +..|+.++-+..+|.++++. ..+...........|.++..++++.+.++..  +.|..||..+.+... ....   ...
T Consensus       420 lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~-~~~~~~~~~~  495 (795)
T 4a2l_A          420 VYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTT-IEKEKDGTPV  495 (795)
T ss_dssp             EEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEE-CCBCTTCCBC
T ss_pred             EEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEE-cccccccccc
Confidence            66677777899999887653 2221111111224688898888888666554  458899976654322 1110   011


Q ss_pred             ccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          230 HEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      ....|.++...++|++.+... +| +..|+.
T Consensus       496 ~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~  524 (795)
T 4a2l_A          496 VSKQITTLFRDSHKRLWIGGE-EG-LSVFKQ  524 (795)
T ss_dssp             CCCCEEEEEECTTCCEEEEES-SC-EEEEEE
T ss_pred             CCceEEEEEECCCCCEEEEeC-Cc-eEEEeC
Confidence            235789999999998777543 44 555553

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.84  E-value=0.0094  Score=49.63  Aligned_cols=242  Identities=10%  Similarity=0.107  Sum_probs=122.9

Q ss_pred             eeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC----eEEEEeCC
Q 024451            3 CAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVLWDIT   77 (267)
Q Consensus         3 ~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~----~v~iwd~~   77 (267)
                      ++++| ++..|..+...+.|+.+|.....       + ..+.........+++.+++..++++-..++    .+...+..
T Consensus       142 lavdp~~~g~Lyv~d~~~~I~~id~~~~~-------v-~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          142 LSFDPKNHNHLYLVGEQHPTRLIDFEKEY-------V-STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             EEEETTEEEEEEEEEBTEEEEEEETTTTE-------E-EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             EEECCCCCCeEEEEeCCCcEEEEECCCCE-------E-EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            56777 34444444444788888875421       1 111122344667889887653444433222    23333332


Q ss_pred             CCee-EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCE-EE
Q 024451           78 TGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNR-FG  154 (267)
Q Consensus        78 ~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~-l~  154 (267)
                      .... ...+.      .-.....+++++.++.++++-..++.|..++..... ...... +....-..++|+|++++ ++
T Consensus       214 g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~-~~~~~~~~~~~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          214 SGFKVITELT------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE-TTPLFTIQDSGWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             GTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE-EEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred             Cceeeeeeec------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-EEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence            2111 01111      011234566776567788777778899999876322 111111 11233578999999994 45


Q ss_pred             EeeCCCcEEEEeCCCC--ee--eEEEEeecCC-C---------CCCcEE-EEEEc--------cCCCEEEEEEeCCeEEE
Q 024451          155 TGSDDGTCRLFDIRTG--HQ--LQVYYQQHGE-N---------EIPHVT-SIAFS--------ISGRLLFAGYSNGDCYV  211 (267)
Q Consensus       155 ~~~~d~~i~iwd~~~~--~~--~~~~~~~~~~-~---------~~~~v~-~~~~s--------~~~~~l~~g~~dg~i~i  211 (267)
                      +-...+.|..++.+..  +.  ...+...... .         ...... .++..        +++.+.++=..++.|+.
T Consensus       287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~  366 (430)
T 3tc9_A          287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI  366 (430)
T ss_dssp             EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred             EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence            5557788999886532  11  1222221000 0         011123 34442        34555565556778888


Q ss_pred             EeCCccceeeeccc----ccC---------CccceEEEEEECCC-CCeEEEeECCCcEEEEec
Q 024451          212 WDTLLAKVVLNLGS----LQN---------SHEGRITCLGLSAD-GSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       212 ~d~~~~~~~~~~~~----~~~---------~~~~~v~~~~~~p~-~~~l~sgs~dg~i~~w~~  260 (267)
                      ++. .++.......    ...         ..-..-..++++|+ +.++++-.....|+.+++
T Consensus       367 i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          367 LTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             ECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             ECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            874 2322211110    000         00113578999994 666665555677877764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.80  E-value=0.0082  Score=47.81  Aligned_cols=181  Identities=13%  Similarity=0.017  Sum_probs=108.0

Q ss_pred             CCeEEEEeCCCCe--eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEE
Q 024451           68 DQTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK  145 (267)
Q Consensus        68 d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~  145 (267)
                      ...|+..++....  ....+      ........++|++.+++++.+-...+.|..++..........+.........++
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~------~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla   85 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVV------GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA   85 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEE------EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred             cCeEEEEECCCCceEEEEEe------cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence            4568888887642  11111      112345678888777788888888889999987643211122222223467789


Q ss_pred             EecC-CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE--eCCeEEEEeCCccceeee
Q 024451          146 FFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY--SNGDCYVWDTLLAKVVLN  222 (267)
Q Consensus       146 ~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~--~dg~i~i~d~~~~~~~~~  222 (267)
                      +.+. ++.+++-...+.|.+++++.... ..+..    ........++++|.+..|....  ..+.|..+++...... .
T Consensus        86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~----~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~  159 (318)
T 3sov_A           86 CDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFW----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-I  159 (318)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC----SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-E
T ss_pred             EEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEe----CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-E
Confidence            9874 45556666778999999865432 22221    1123468899998766666554  2578888886532111 1


Q ss_pred             cccccCCccceEEEEEECCCCCeEEEe-ECCCcEEEEecCce
Q 024451          223 LGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKIWAFGGY  263 (267)
Q Consensus       223 ~~~~~~~~~~~v~~~~~~p~~~~l~sg-s~dg~i~~w~~~~~  263 (267)
                      +.   ...-..-..++++|++..|..+ +..+.|..+++.|.
T Consensus       160 ~~---~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~  198 (318)
T 3sov_A          160 II---NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  198 (318)
T ss_dssp             EE---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EE---ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence            10   0111234789999866655544 45677888888753

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.78  E-value=0.011  Score=48.48  Aligned_cols=196  Identities=11%  Similarity=0.026  Sum_probs=113.1

Q ss_pred             eeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++|++ ++.++.+-...+.|..++.....       ....+.........+++.+.++.+.++-...+.|.+.+++....
T Consensus       121 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          121 LDFHHRRELVFWSDVTLDRILRANLNGSN-------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCC-------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred             EEEecCCCeEEEEeCCCCcEEEEecCCCC-------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence            56775 44555555567778777765321       11111111122345667765556566666678888888875443


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-CeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE-EEeeCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDD  159 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d  159 (267)
                      ...+.     ..-.....+++++..+.++.+-... +.|...++.. ..............+.++++|+++.| ++-+..
T Consensus       194 ~~l~~-----~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          194 KVLLW-----QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             EEEEC-----SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred             EEeec-----CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCC
Confidence            33332     1223467888887777777776665 7888888753 22222222222346789999865544 455567


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  217 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  217 (267)
                      +.|..+|++.... ..+...    .......+++ ..+..+.+-...+.|..+|...+
T Consensus       268 ~~I~~~d~dG~~~-~~~~~~----~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          268 HVIERANLDGSHR-KAVISQ----GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             TEEEEECTTSCSC-EEEECS----SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             CEEEEEeCCCCee-EEEEEC----CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence            7899999865332 222221    1234567777 34555666667788888884443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.77  E-value=0.0054  Score=54.96  Aligned_cols=202  Identities=11%  Similarity=0.083  Sum_probs=104.6

Q ss_pred             CCee-eEEEEEEe-cCCCeeEEEeeCC----CeEEEEeCCCC-eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC
Q 024451           44 GHKG-YVSCCQYV-PDEDTHLITSSGD----QTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  116 (267)
Q Consensus        44 ~h~~-~v~~~~~~-~~~~~~l~s~~~d----~~v~iwd~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d  116 (267)
                      +|.. .+...+|+ |++..+.++.+.+    ..|+++|+.++ ...   ....    ......+.|++.+..++.+...+
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l---~~~~----~~~~~~~~WspDg~~l~y~~~d~  242 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI---ADKV----SGTNGEIVWGPDHTSLFYVTKDE  242 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC---CCCE----EEECSCCEECSSTTEEEEEEECT
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC---Cccc----cCceeeEEEecCCCEEEEEEECC
Confidence            4443 67888999 9876444444433    35999999987 521   1000    11123567887555544443221


Q ss_pred             ----CeEEEEeCCCccc-ceEEee-ccccceeEEEEecCCCEEEEeeC---CCcEEEEeCCCCe-ee--EEEEeecCCCC
Q 024451          117 ----STARLWDTRVASR-AVRTFH-GHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTGH-QL--QVYYQQHGENE  184 (267)
Q Consensus       117 ----~~i~iwd~~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~-~~--~~~~~~~~~~~  184 (267)
                          ..|.++++..... ....+. .+......+.|+|+|++|+..+.   ...|.++|+.++. ..  ..+...    .
T Consensus       243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~----~  318 (751)
T 2xe4_A          243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR----E  318 (751)
T ss_dssp             TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC----C
T ss_pred             CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC----C
Confidence                2577777754321 122222 22234567899999998876552   3468888887652 11  222111    1


Q ss_pred             CCcEEEEEEccCCCEEEEEEeC----CeEEEEeCCccceeee-cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          185 IPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLLAKVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       185 ~~~v~~~~~s~~~~~l~~g~~d----g~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      .....++.|+..+.+++.+..+    ..|..+|......... +  +.......+..+.+. .+.++++...|+..+||-
T Consensus       319 ~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~l--i~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          319 KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVL--VDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEE--ECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred             CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeE--ECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence            1223444444334444444433    3677777653211111 0  111112245666665 344566777788777664

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.74  E-value=0.014  Score=48.68  Aligned_cols=155  Identities=12%  Similarity=0.195  Sum_probs=91.6

Q ss_pred             EEEEEEec-CCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC----eEEEEe
Q 024451           49 VSCCQYVP-DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS----TARLWD  123 (267)
Q Consensus        49 v~~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~----~i~iwd  123 (267)
                      ...+++.| +++ .|+.+...+.|+.+|+..+.......      .......+++++....++++...++    .+.+.+
T Consensus       139 P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~~------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~  211 (430)
T 3tc9_A          139 AVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVSTVYS------GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT  211 (430)
T ss_dssp             CCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEEEEC------CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred             CCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEEEec------CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence            35677887 343 45555544889999998765433332      2234677888875554666655333    233333


Q ss_pred             CCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE
Q 024451          124 TRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA  202 (267)
Q Consensus       124 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  202 (267)
                      ..........+. .......++++| ++.++++-..++.|..+|...+..... ....   .......++|+|++++|..
T Consensus       212 ~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~-~~~~---~~~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          212 RESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL-FTIQ---DSGWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             GGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE-EECS---SSSCCEEEEECTTSSEEEE
T ss_pred             CCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EEcC---CCCcceeEEEcCCCCEEEE
Confidence            221111112222 123457889999 677777766788999999876553222 2111   1134578999999995554


Q ss_pred             E-EeCCeEEEEeCC
Q 024451          203 G-YSNGDCYVWDTL  215 (267)
Q Consensus       203 g-~~dg~i~i~d~~  215 (267)
                      . ..++.|+.++..
T Consensus       287 ~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          287 VVVNQHYILRSDYD  300 (430)
T ss_dssp             EETTTTEEEEEEEE
T ss_pred             EECCCCEEEEEeCC
Confidence            4 466889887754

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.73  E-value=0.018  Score=49.89  Aligned_cols=140  Identities=17%  Similarity=0.148  Sum_probs=78.6

Q ss_pred             CeEEEEeCCCcccceEE-eecccc----ceeE-EEEe---cCCC---EEEEeeCCCcEEEEeCCCCeeeEEEEeecCC--
Q 024451          117 STARLWDTRVASRAVRT-FHGHEG----DVNT-VKFF---PDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--  182 (267)
Q Consensus       117 ~~i~iwd~~~~~~~~~~-~~~~~~----~i~~-~~~~---~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--  182 (267)
                      +.|..+|.++....... ...|..    .+.. +.+.   .+|+   .++.++.+|.+.++|.++++.+..+......  
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  370 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW  370 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence            57889998765443322 112211    1111 2222   3564   6788899999999999999876543221100  


Q ss_pred             ---------------------------CCCC-----------cEEEEEEccCCCEEEEEE--------------------
Q 024451          183 ---------------------------NEIP-----------HVTSIAFSISGRLLFAGY--------------------  204 (267)
Q Consensus       183 ---------------------------~~~~-----------~v~~~~~s~~~~~l~~g~--------------------  204 (267)
                                                 ....           .-..++++|+...+++..                    
T Consensus       371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~  450 (582)
T 1flg_A          371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY  450 (582)
T ss_dssp             EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence                                       0000           001346677655555433                    


Q ss_pred             -------------eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          205 -------------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       205 -------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                                   .+|.|+-||+.+++...+.........+++.     ..+..++.|+.||.++.||..
T Consensus       451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~-----tagglvf~g~~dg~l~A~D~~  515 (582)
T 1flg_A          451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLA-----TAGNLVFTGTGDGYFKAFDAK  515 (582)
T ss_dssp             CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEE-----ETTTEEEEECTTSEEEEEETT
T ss_pred             eccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceE-----eCCCEEEEECCCCcEEEEECC
Confidence                         2578999999888776544211111222221     135677779999999999863

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.73  E-value=0.0051  Score=48.91  Aligned_cols=164  Identities=8%  Similarity=0.012  Sum_probs=103.3

Q ss_pred             EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec----cc--cceeEEEE---ecCCCEEEEee-----------
Q 024451           98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----HE--GDVNTVKF---FPDGNRFGTGS-----------  157 (267)
Q Consensus        98 ~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~----~~--~~i~~~~~---~~~~~~l~~~~-----------  157 (267)
                      .+.+|++..++++++.-..+.|..|+..........+.+    ..  ..+..+.+   .|++.++++.-           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            456788777777777778999999997532211112211    11  13578999   68877777533           


Q ss_pred             --CCCcEEEEeCC---CCeeeEEEEee-cCCC-------CCCcEEEEEEccCCCEEEEEEeC-CeEEEEeCCcccee-ee
Q 024451          158 --DDGTCRLFDIR---TGHQLQVYYQQ-HGEN-------EIPHVTSIAFSISGRLLFAGYSN-GDCYVWDTLLAKVV-LN  222 (267)
Q Consensus       158 --~d~~i~iwd~~---~~~~~~~~~~~-~~~~-------~~~~v~~~~~s~~~~~l~~g~~d-g~i~i~d~~~~~~~-~~  222 (267)
                        .+..+..+|+.   +++.....--. ....       .......++.+++|+..++++.. +.|..++....... ..
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~  175 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFA  175 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeee
Confidence              26789999998   67655432210 0000       11247899999999999999888 88888886533221 11


Q ss_pred             cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          223 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       223 ~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .........-..+.++++|+|+.|+....+|.+.-+++.
T Consensus       176 ~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          176 WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            111001111235689999999988877668988888865

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.70  E-value=0.013  Score=47.11  Aligned_cols=189  Identities=13%  Similarity=0.156  Sum_probs=110.4

Q ss_pred             eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC----CC---eEEEEecC--CCeEEEEeCCCcccce
Q 024451           61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS----NS---RMFVSGSC--DSTARLWDTRVASRAV  131 (267)
Q Consensus        61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~~~~s~~~--d~~i~iwd~~~~~~~~  131 (267)
                      +++....++-+.+||+ +++.+..+..       ..++.+.+.+.    ..   ..+++.-.  +.+|.+|++......+
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l  113 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC-------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC-------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence            4555566778999999 6666655531       33455555431    11   12334444  5789999663222234


Q ss_pred             EEeec------cc-cceeEEEE--ecC-CC-EEEEeeCCCcEEEEeCCC---CeeeEEEEeecCCCCCCcEEEEEEccCC
Q 024451          132 RTFHG------HE-GDVNTVKF--FPD-GN-RFGTGSDDGTCRLFDIRT---GHQLQVYYQQHGENEIPHVTSIAFSISG  197 (267)
Q Consensus       132 ~~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~  197 (267)
                      ..+..      .. ..+..+++  +|. ++ ++++..+++.+..|++..   ++...........  ...+..+..++..
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~  191 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADDEY  191 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEETTT
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcCCC
Confidence            43311      11 45667777  664 44 577778889999999832   2111111111111  1356778889999


Q ss_pred             CEEEEEEeCCeEEEEeCCc-----cceeeecccccCCccceEEEEEE--CCCCC-eEEEeE-CCCcEEEEecC
Q 024451          198 RLLFAGYSNGDCYVWDTLL-----AKVVLNLGSLQNSHEGRITCLGL--SADGS-ALCTGS-WDTNLKIWAFG  261 (267)
Q Consensus       198 ~~l~~g~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~v~~~~~--~p~~~-~l~sgs-~dg~i~~w~~~  261 (267)
                      ..|+.+-++..|..||...     .+.+....  .......+..|++  .++++ ||+..+ .+.+..+|+..
T Consensus       192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~--~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD--GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TEEEEEETTTEEEEEECSTTSCSCCEEEEEBS--SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CeEEEecccceEEEEeCCcCCCCCceEEEEec--CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            9999999987788888652     22332221  1122335788877  56666 666555 46789999874

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.69  E-value=0.014  Score=47.18  Aligned_cols=194  Identities=12%  Similarity=0.047  Sum_probs=113.0

Q ss_pred             eeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++|++. +.++.+-...+.|..++.....       ..............+++.+.++.+.++-...+.|.+.+++....
T Consensus        78 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  150 (349)
T 3v64_C           78 LDFHHRRELVFWSDVTLDRILRANLNGSN-------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  150 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             EEEeccccEEEEEeccCCceEEEecCCCC-------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence            567754 4455555566777777765321       11111111122345677765666666666778899999875543


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-CeEEEEeCCCcccceEEe-eccccceeEEEEecCCCEE-EEeeC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRF-GTGSD  158 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l-~~~~~  158 (267)
                      ...+.     ..-.....++++|..+.++.+-... +.|...++.. . ....+ .......+.++++|+++.| ++-..
T Consensus       151 ~~l~~-----~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~  223 (349)
T 3v64_C          151 KVLLW-----QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-S-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK  223 (349)
T ss_dssp             EEEEC-----TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-C-SCEESCCSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             EEEEe-----CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-C-CcEEEEECCCCCcceEEEeCCCCEEEEEECC
Confidence            33332     1223457888888777788777666 7888888753 2 22222 1222346789999866554 44456


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL  216 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~  216 (267)
                      .+.|..+|++.... ..+...    .......+++ ..+....+-...+.|..+|...
T Consensus       224 ~~~I~~~~~dG~~~-~~~~~~----~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~  275 (349)
T 3v64_C          224 HHVIERANLDGSHR-KAVISQ----GLPHPFAITV-FEDSLYWTDWHTKSINSANKFT  275 (349)
T ss_dssp             TTEEEEEETTSCSC-EEEECS----SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTT
T ss_pred             CCEEEEEeCCCCce-EEEEeC----CCCCceEEEE-ECCEEEEecCCCCeEEEEEccC
Confidence            77899999865332 222221    1234567777 3455556666677888887433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.69  E-value=0.0024  Score=57.16  Aligned_cols=154  Identities=11%  Similarity=0.040  Sum_probs=85.8

Q ss_pred             ceEEEEEe-CCCCeEEEEecCC----CeEEEEeCCCc-ccceEEeeccccceeEEEEecCCCEEEEeeCC-----CcEEE
Q 024451           96 DVLSVSIS-GSNSRMFVSGSCD----STARLWDTRVA-SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-----GTCRL  164 (267)
Q Consensus        96 ~i~~~~~~-~~~~~~~~s~~~d----~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i  164 (267)
                      .+....++ |.+..+..+...+    ..|+++|+... ......+.   .....+.|+|+++.|+....|     ..|..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            56678888 6544443333333    35999998754 31111111   123578999999888776655     25777


Q ss_pred             EeCCCCeee-EEEEeecCCCCCCcEEEEEEccCCCEEEEEEe---CCeEEEEeCCccc-ee--eecccccCCccceEEEE
Q 024451          165 FDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---NGDCYVWDTLLAK-VV--LNLGSLQNSHEGRITCL  237 (267)
Q Consensus       165 wd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~i~d~~~~~-~~--~~~~~~~~~~~~~v~~~  237 (267)
                      +++.+++.. ..++....   ......+.|||+|++|+....   ...|+++|+.... ..  ..+   .....+...++
T Consensus       252 ~~lgt~~~~~~lv~~~~~---~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l---~~~~~~~~~s~  325 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHN---PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV---RPREKGVRYDV  325 (751)
T ss_dssp             EETTSCGGGCEEEEECCC---TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES---SCCCTTCCEEE
T ss_pred             EECCCCchhcEEEEecCC---CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe---ecCCCCceEEE
Confidence            888765422 22222111   124568899999998887653   3478888986542 11  111   11223445556


Q ss_pred             EECCCCCeEEEeECC--CcEEEE
Q 024451          238 GLSADGSALCTGSWD--TNLKIW  258 (267)
Q Consensus       238 ~~~p~~~~l~sgs~d--g~i~~w  258 (267)
                      .|+.++.+++....+  +.-+||
T Consensus       326 ~~~~g~~l~~~t~~~~a~~~~L~  348 (751)
T 2xe4_A          326 QMHGTSHLVILTNEGGAVNHKLL  348 (751)
T ss_dssp             EEETTTEEEEEECTTTCTTCEEE
T ss_pred             eeeeCCEEEEEeCCCCCCCcEEE
Confidence            655444444444443  344444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.64  E-value=0.014  Score=46.27  Aligned_cols=179  Identities=11%  Similarity=-0.019  Sum_probs=107.5

Q ss_pred             CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc---ccceEEeeccccceeEEE
Q 024451           69 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA---SRAVRTFHGHEGDVNTVK  145 (267)
Q Consensus        69 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~i~~~~  145 (267)
                      ..|+..|+.+......+.      .-.....+++++.+++++.+...++.|..++....   ......+.........++
T Consensus        10 ~~I~~i~~~~~~~~~~~~------~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla   83 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA   83 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred             CeEEEEECCCcceEehhc------CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEE
Confidence            458888887765443332      22346788898777788888888889999987631   111222222223457889


Q ss_pred             EecCC-CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-C-CeEEEEeCCccceeee
Q 024451          146 FFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-N-GDCYVWDTLLAKVVLN  222 (267)
Q Consensus       146 ~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-d-g~i~i~d~~~~~~~~~  222 (267)
                      +.+.+ +..++-...+.|.+.|+..... ..+...    .......++++|.+..|+.... . +.|..+++..... ..
T Consensus        84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~----~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~  157 (316)
T 1ijq_A           84 VDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRE----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS  157 (316)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSSSE-EEEEEC----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EE
T ss_pred             EeecCCeEEEEECCCCEEEEEeCCCCce-EEEEEC----CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EE
Confidence            98754 4555656788999999875432 222221    1224688999987666555443 3 6888887643221 11


Q ss_pred             cccccCCccceEEEEEECCCCCeEEEe-ECCCcEEEEecCc
Q 024451          223 LGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKIWAFGG  262 (267)
Q Consensus       223 ~~~~~~~~~~~v~~~~~~p~~~~l~sg-s~dg~i~~w~~~~  262 (267)
                      +.   ...-..-..++++|++..|..+ +..+.|..+++.|
T Consensus       158 ~~---~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          158 LV---TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             EE---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EE---ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            10   0112345789999876665544 4466888888866

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.61  E-value=0.022  Score=47.48  Aligned_cols=202  Identities=11%  Similarity=0.021  Sum_probs=112.0

Q ss_pred             EEEEEEecC--CCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC---Ce-EEEE
Q 024451           49 VSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---ST-ARLW  122 (267)
Q Consensus        49 v~~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d---~~-i~iw  122 (267)
                      ...+++.|+  ++. |+.+...+.|+.+|..++.......      .......+++++... ++++....   .. +...
T Consensus       141 P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~~------~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~  212 (433)
T 4hw6_A          141 IWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKTT------NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF  212 (433)
T ss_dssp             CCEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEECC------CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred             CceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEeec------CCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence            456788874  333 4444444889999987765443321      223467888886544 66665422   11 2222


Q ss_pred             eCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451          123 DTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF  201 (267)
Q Consensus       123 d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  201 (267)
                      +..........+ ........++++| ++.++++-..++.|..+|..++.....+.....   ......++|+|+++.|.
T Consensus       213 ~~~~~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~---~~~~~~ia~dpdG~~LY  288 (433)
T 4hw6_A          213 TRASGFTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT---KGSNFHIVWHPTGDWAY  288 (433)
T ss_dssp             CGGGTTCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC---CSSCEEEEECTTSSEEE
T ss_pred             ECCCCeeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC---CCCcccEEEeCCCCEEE
Confidence            221111100111 1223456788999 677666666788999999886654222222111   12235799999999655


Q ss_pred             EE-EeCCeEEEEeCCc--ccee--eecccc--cCCc---------cceEEEEEE---------CCCCCeEEEeECCCcEE
Q 024451          202 AG-YSNGDCYVWDTLL--AKVV--LNLGSL--QNSH---------EGRITCLGL---------SADGSALCTGSWDTNLK  256 (267)
Q Consensus       202 ~g-~~dg~i~i~d~~~--~~~~--~~~~~~--~~~~---------~~~v~~~~~---------~p~~~~l~sgs~dg~i~  256 (267)
                      .. ..++.|+.++...  .+..  ..+...  ....         -..-..+++         .++|++.++-...+.|+
T Consensus       289 vad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~  368 (433)
T 4hw6_A          289 IIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR  368 (433)
T ss_dssp             EEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred             EEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence            54 4567899977542  2110  000000  0000         112456888         77777777766677888


Q ss_pred             EEecCc
Q 024451          257 IWAFGG  262 (267)
Q Consensus       257 ~w~~~~  262 (267)
                      .++..|
T Consensus       369 ~~~~~G  374 (433)
T 4hw6_A          369 VLTPEG  374 (433)
T ss_dssp             EECTTS
T ss_pred             EECCCC
Confidence            887655

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.54  E-value=0.023  Score=45.93  Aligned_cols=140  Identities=12%  Similarity=0.108  Sum_probs=79.9

Q ss_pred             CCCeEEEEeCCCcccceEEee--c-----cccceeEEEEec--CCC--EEEEeeC--CCcEEEEeCCCCeeeEEEEeecC
Q 024451          115 CDSTARLWDTRVASRAVRTFH--G-----HEGDVNTVKFFP--DGN--RFGTGSD--DGTCRLFDIRTGHQLQVYYQQHG  181 (267)
Q Consensus       115 ~d~~i~iwd~~~~~~~~~~~~--~-----~~~~i~~~~~~~--~~~--~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~  181 (267)
                      .+|.|.++|.+........+.  +     ..-..+.+.+.+  ++.  ++++-..  +.+|.+|+++.......+.....
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            688899999863221222221  1     112456777766  343  4444333  56888988765432222222221


Q ss_pred             CCCCCcEEEEEEccCCCEEEEEE-----------------eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCC
Q 024451          182 ENEIPHVTSIAFSISGRLLFAGY-----------------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS  244 (267)
Q Consensus       182 ~~~~~~v~~~~~s~~~~~l~~g~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  244 (267)
                      .........+.+.++|.+.++..                 ..|.|+-+|....+.+.       ..-..-+.++|+||++
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~-------~~l~~pNGia~spDg~  233 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA-------EGFDFANGINISPDGK  233 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEE-------EEESSEEEEEECTTSS
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEee-------cCCcccCcceECCCCC
Confidence            12233578999999999888754                 13567777753211111       1112358899999998


Q ss_pred             eEEEeE-CCCcEEEEecC
Q 024451          245 ALCTGS-WDTNLKIWAFG  261 (267)
Q Consensus       245 ~l~sgs-~dg~i~~w~~~  261 (267)
                      .|..+. ..+.|..|++.
T Consensus       234 ~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          234 YVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             EEEEEEGGGTEEEEEEEC
T ss_pred             EEEEEeCCCCeEEEEEEC
Confidence            776654 46778888874

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.49  E-value=0.023  Score=49.13  Aligned_cols=59  Identities=20%  Similarity=0.233  Sum_probs=40.6

Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  223 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  223 (267)
                      ++.+..||..+++.+..+....      .+....+...+..++.++.||.|+.||..+++.+..+
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~------~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKF------AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESS------CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCC------CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence            5789999999988765443211      1111222335667778999999999999998887655

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.49  E-value=0.0038  Score=55.38  Aligned_cols=205  Identities=9%  Similarity=0.006  Sum_probs=107.5

Q ss_pred             ceeeCCCCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      .++|++.+. ++++-...+.|..+++........   ....+.........+++.+.++.++++-...+.|.+.++....
T Consensus       410 gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~---~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC---CCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             EEccccccCeEEEEecCCCeEEEEecCCCCCCcc---eEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            456776554 444444567888888754110000   1111111111233456665455555665667889999987654


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-CeEEEEeCCCcccceEEe-eccccceeEEEEecCC-CEEEEee
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDG-NRFGTGS  157 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~l~~~~  157 (267)
                      ....+...     ......+++++..+.++++.... +.|...++.. . ....+ ......-+.++++|++ .++++-.
T Consensus       487 ~~~l~~~~-----~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~  559 (699)
T 1n7d_A          487 RKTLFREQ-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-V-DIYSLVTENIQWPNGITLDLLSGRLYWVDS  559 (699)
T ss_dssp             EEEECCCS-----SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-C-CCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred             eEEEEeCC-----CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-C-CeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence            43333211     12245566776666666655333 6777776642 2 12222 1122345689999875 4555556


Q ss_pred             CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee
Q 024451          158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  220 (267)
                      ..+.|..+|+..... ..+....  ........+++..+ .++++-...+.|..+|..+++.+
T Consensus       560 ~~~~I~~~d~dG~~~-~~~~~~~--~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~  618 (699)
T 1n7d_A          560 KLHSISSIDVNGGNR-KTILEDE--KRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV  618 (699)
T ss_dssp             TTTEEEEECSSSSCC-EEECCCS--SSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEE
T ss_pred             CCCeEEEEccCCCce-EEEEecC--CcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCce
Confidence            778899999865332 2222211  11122344555443 44455556788999987655443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.47  E-value=0.035  Score=46.24  Aligned_cols=240  Identities=10%  Similarity=0.102  Sum_probs=127.0

Q ss_pred             ceeeCCC---CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC---Ce-EEEE
Q 024451            2 TCAFSPT---GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---QT-CVLW   74 (267)
Q Consensus         2 ~~~~~~~---g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~-v~iw   74 (267)
                      .++++|+   |+++++-.. +.|+.++.....        ...+.+.......+++.+++. ++++-...   .. +...
T Consensus       143 gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~--------v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~  212 (433)
T 4hw6_A          143 RMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQY--------VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF  212 (433)
T ss_dssp             EEEECTTTTTCEEEEECBT-SCEEEEETTTTE--------EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred             eEEEccccCCCEEEEEeCC-CCEEEEECCCCE--------EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence            3577874   555555333 788888864311        112222334567889998775 44443311   11 2222


Q ss_pred             eCCCCee-EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec--cccceeEEEEecCCC
Q 024451           75 DITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGN  151 (267)
Q Consensus        75 d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~  151 (267)
                      +...+.. ...+.      .-.....+++++.++.++++...++.|+.++..... ....+..  ....-..++|+|+++
T Consensus       213 ~~~~~~~~~~~~~------~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~-~~~~~~~~~~~~~~~~ia~dpdG~  285 (433)
T 4hw6_A          213 TRASGFTERLSLC------NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT-LTEEEVMMDTKGSNFHIVWHPTGD  285 (433)
T ss_dssp             CGGGTTCCEEEEE------ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC-EEEEEEECSCCSSCEEEEECTTSS
T ss_pred             ECCCCeecccccc------ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe-EEEEEeccCCCCCcccEEEeCCCC
Confidence            2221111 00110      111234566776567777777778889999875322 2122211  112234699999998


Q ss_pred             E-EEEeeCCCcEEEEeCCC--Cee--eEEEEeecCC----------CCCCcEEEEEE---------ccCCCEEEEEEeCC
Q 024451          152 R-FGTGSDDGTCRLFDIRT--GHQ--LQVYYQQHGE----------NEIPHVTSIAF---------SISGRLLFAGYSNG  207 (267)
Q Consensus       152 ~-l~~~~~d~~i~iwd~~~--~~~--~~~~~~~~~~----------~~~~~v~~~~~---------s~~~~~l~~g~~dg  207 (267)
                      . +++-...+.|+.++...  +..  ...+......          ........+++         .+++.+.++=..++
T Consensus       286 ~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~  365 (433)
T 4hw6_A          286 WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH  365 (433)
T ss_dssp             EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence            4 45555678899988652  211  1122221010          01123577888         77777777776778


Q ss_pred             eEEEEeCCccceeeecccccC----C----------ccceEEEEEEC-CCCCeEEEeECCCcEEEEec
Q 024451          208 DCYVWDTLLAKVVLNLGSLQN----S----------HEGRITCLGLS-ADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       208 ~i~i~d~~~~~~~~~~~~~~~----~----------~~~~v~~~~~~-p~~~~l~sgs~dg~i~~w~~  260 (267)
                      .|+.++. .+... .+.....    .          .-..-..|+++ ++|.++++=.....|+..++
T Consensus       366 ~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          366 TVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             EEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            8999985 33222 1111000    0          01124679999 67776666556677887764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.46  E-value=0.033  Score=45.83  Aligned_cols=188  Identities=9%  Similarity=-0.034  Sum_probs=113.7

Q ss_pred             eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc---cceEEeecc
Q 024451           61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---RAVRTFHGH  137 (267)
Q Consensus        61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~---~~~~~~~~~  137 (267)
                      +|+.+ ....|+..++..........      ....+..+++++.++.++.+-...+.|+.+++....   .........
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~~~~------~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~  157 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTSLIP------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD  157 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEEEEC------SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS
T ss_pred             eeEEe-ccceeEEEccCCcceeEecc------ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC
Confidence            44433 34678888887654333321      234577899998778888887788889888875311   112222223


Q ss_pred             ccceeEEEEec-CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe--CCeEEEEeC
Q 024451          138 EGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS--NGDCYVWDT  214 (267)
Q Consensus       138 ~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~i~i~d~  214 (267)
                      ......+++.+ .+++.++-...+.|.+.+++....... ...    .......++++|.+..|+....  .+.|...++
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l-~~~----~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~  232 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-FRE----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  232 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE-EEC----SSCCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred             CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEE-EeC----CCCCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence            34567889988 455556666778999999875443322 221    1224689999997776665542  367888886


Q ss_pred             CccceeeecccccCCccceEEEEEECCCCCeEEEeE-CCCcEEEEecCceE
Q 024451          215 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAFGGYR  264 (267)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~~~~  264 (267)
                      .......-.    ...-..-..|+++|++..|..+. ..+.|..+++.|..
T Consensus       233 dG~~~~~~~----~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          233 NGVDIYSLV----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  279 (400)
T ss_dssp             TSCSCEEEE----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred             CCCccEEEE----ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence            532221111    11123457899998776665543 45678888887644

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.46  E-value=0.029  Score=45.06  Aligned_cols=202  Identities=12%  Similarity=0.187  Sum_probs=112.0

Q ss_pred             CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC----CCe--e-EEEeeC--CCeEEEEeCC
Q 024451            7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD----EDT--H-LITSSG--DQTCVLWDIT   77 (267)
Q Consensus         7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~--~-l~s~~~--d~~v~iwd~~   77 (267)
                      |...+++...+.+-+.+||+...        ....+..  +.++-|..-|.    +..  + +++...  +++|.+|++.
T Consensus        38 p~~s~ii~t~k~~gL~Vydl~G~--------~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD  107 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSLDGK--------MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID  107 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEETTSC--------EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred             CCccEEEEEcCCCCEEEEcCCCc--------EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence            34466777777888999998542        2333332  23444444331    111  2 334444  6899999763


Q ss_pred             --CCeeEEEeCCcc-ccCCc-cceEEEEE--eCCCCe-EEEEecCCCeEEEEeCCC------cccceEEeeccccceeEE
Q 024451           78 --TGLRTSVFGGEF-QSGHT-ADVLSVSI--SGSNSR-MFVSGSCDSTARLWDTRV------ASRAVRTFHGHEGDVNTV  144 (267)
Q Consensus        78 --~~~~~~~~~~~~-~~~~~-~~i~~~~~--~~~~~~-~~~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~~i~~~  144 (267)
                        ++. ...+.... ..+.. ..+.-+++  ++..++ +++....+|.+..|++..      ..+.++.+.. .+.+..+
T Consensus       108 p~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egc  185 (355)
T 3amr_A          108 GKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGM  185 (355)
T ss_dssp             TTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEE
T ss_pred             CCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceE
Confidence              433 22221100 00011 33444555  554443 566677789998888732      1234555543 4578889


Q ss_pred             EEecCCCEEEEeeCCCcEEEEeCCCCe--eeEEEEeecCCCCCCcEEEEEE--ccCCC-EEEEEE-eCCeEEEEeCC-cc
Q 024451          145 KFFPDGNRFGTGSDDGTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAF--SISGR-LLFAGY-SNGDCYVWDTL-LA  217 (267)
Q Consensus       145 ~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~--s~~~~-~l~~g~-~dg~i~i~d~~-~~  217 (267)
                      ...+....|..+-+|..|..+|.+...  ....+.......-...+..+++  .++++ +|++++ .+..+.+||.. ..
T Consensus       186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~  265 (355)
T 3amr_A          186 AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKN  265 (355)
T ss_dssp             EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCC
Confidence            999988899999999777777754221  1111111111111224677776  45555 777776 56799999986 44


Q ss_pred             cee
Q 024451          218 KVV  220 (267)
Q Consensus       218 ~~~  220 (267)
                      +.+
T Consensus       266 ~~v  268 (355)
T 3amr_A          266 KYV  268 (355)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            433

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.46  E-value=0.03  Score=45.24  Aligned_cols=203  Identities=12%  Similarity=0.120  Sum_probs=105.7

Q ss_pred             eeeCCCCCeEEEcc------------CCCeEEEeecCCCCCCCCCCccccc-ccCCeeeEEEEEEec--CCCeeEEEee-
Q 024451            3 CAFSPTGQSVACGG------------LDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVP--DEDTHLITSS-   66 (267)
Q Consensus         3 ~~~~~~g~~l~~~~------------~d~~v~~w~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~--~~~~~l~s~~-   66 (267)
                      ++..|+|..+++.+            .+|.|.++|...+.....++..... +........-+.+.+  ++..+|+.+. 
T Consensus        55 i~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh  134 (355)
T 3sre_A           55 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH  134 (355)
T ss_dssp             EEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred             eEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEEC
Confidence            45678887766653            6899999997643211111111110 111222344555554  3333444442 


Q ss_pred             --CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEec-----------------CCCeEEEEeCCCc
Q 024451           67 --GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-----------------CDSTARLWDTRVA  127 (267)
Q Consensus        67 --~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~-----------------~d~~i~iwd~~~~  127 (267)
                        .+.+|.+|+++.+.....+........-...+.+.+.+ +++++++..                 ..|.|.-++..  
T Consensus       135 ~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--  211 (355)
T 3sre_A          135 PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--  211 (355)
T ss_dssp             STTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--
T ss_pred             CCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--
Confidence              25678888776432211111111111223567788875 456666543                 12445555542  


Q ss_pred             ccceEEeeccccceeEEEEecCCCEEEEe-eCCCcEEEEeCCCCeeeEE--EEeecCCCCCCcEEEEEEcc-CCCEEEEE
Q 024451          128 SRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQV--YYQQHGENEIPHVTSIAFSI-SGRLLFAG  203 (267)
Q Consensus       128 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~-~~~~l~~g  203 (267)
                       . .+.+...-...+.++|+|+++.+..+ +..+.|..|+++....+..  .+. .    ....-.++.++ +|++.+++
T Consensus       212 -~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~----~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          212 -D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-F----DTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             -C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-C----SSEEEEEEECTTTCCEEEEE
T ss_pred             -e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-C----CCCCceEEEeCCCCcEEEEe
Confidence             1 22222223456889999999877655 4678999999864222211  111 1    23467788898 58877766


Q ss_pred             E-eCCeEEEEeCC
Q 024451          204 Y-SNGDCYVWDTL  215 (267)
Q Consensus       204 ~-~dg~i~i~d~~  215 (267)
                      . ..+.|..||..
T Consensus       285 ~~~g~~v~~~~P~  297 (355)
T 3sre_A          285 HPNGMRIFFYDAE  297 (355)
T ss_dssp             ESCHHHHHSCCTT
T ss_pred             cCCceEEEEECCC
Confidence            4 33455555543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.45  E-value=0.058  Score=48.42  Aligned_cols=200  Identities=12%  Similarity=0.083  Sum_probs=113.5

Q ss_pred             eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC
Q 024451           47 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV  126 (267)
Q Consensus        47 ~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~  126 (267)
                      ..|.++...+++  .|-.|+.++-|..||..++.... +... .......|.++.... .+.+.+ |..++.+..++.+.
T Consensus       363 ~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~-~~~~-~~~~~~~v~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~  436 (781)
T 3v9f_A          363 KVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIY-NKEN-RELLSNSVLCSLKDS-EGNLWF-GTYLGNISYYNTRL  436 (781)
T ss_dssp             SCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEEC-C------CCCSBEEEEEECT-TSCEEE-EETTEEEEEECSSS
T ss_pred             cceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEE-ccCC-CCCCCcceEEEEECC-CCCEEE-EeccCCEEEEcCCC
Confidence            568888776654  35566766668888876543221 1100 011335677877764 445544 55556788888653


Q ss_pred             cccceEEee---ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeec-CCCCCCcEEEEEEccCCCEEEE
Q 024451          127 ASRAVRTFH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-GENEIPHVTSIAFSISGRLLFA  202 (267)
Q Consensus       127 ~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~  202 (267)
                      .  ....+.   .....|.++...+++...+ |+. +-+..+|..+++... +.... .......|.++..+++|.+.++
T Consensus       437 ~--~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~g~lWig  511 (781)
T 3v9f_A          437 K--KFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIH-HYDTSNSQLLENFVRSIAQDSEGRFWIG  511 (781)
T ss_dssp             C--EEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCE-EECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred             C--cEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEe-cccCcccccccceeEEEEEcCCCCEEEE
Confidence            2  233332   1235688888887776544 444 568889987654322 21111 0011246889988888886665


Q ss_pred             EEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          203 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       203 g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      . .++-|..||....+.. .+..........|.++...++|++.+.. .+|.+..|+.
T Consensus       512 t-~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~  566 (781)
T 3v9f_A          512 T-FGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSA  566 (781)
T ss_dssp             E-SSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCT
T ss_pred             E-cCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECC
Confidence            4 4344788987654332 1211111123568999999999877644 4665455553

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.43  E-value=0.028  Score=44.23  Aligned_cols=200  Identities=12%  Similarity=0.053  Sum_probs=108.1

Q ss_pred             eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC-CC-eEEEEeCC
Q 024451           48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DS-TARLWDTR  125 (267)
Q Consensus        48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-d~-~i~iwd~~  125 (267)
                      ....+++.+++ .++++-..++.|..||...... ..+.      .......+++.+. ++++++... ++ .|..++..
T Consensus        33 ~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~~~-~~~~------~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~  103 (306)
T 2p4o_A           33 FLENLASAPDG-TIFVTNHEVGEIVSITPDGNQQ-IHAT------VEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKS  103 (306)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTTCCEE-EEEE------CSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECT
T ss_pred             CcceEEECCCC-CEEEEeCCCCeEEEECCCCceE-EEEe------CCCCceeEEEcCC-CcEEEEeccCCcceEEEEcCC
Confidence            45678888865 4555655788999999876432 2221      1234677888764 456655433 22 45556654


Q ss_pred             CcccceEEeec--cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEee-----cCCCCCCcEEEEEEccCCC
Q 024451          126 VASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ-----HGENEIPHVTSIAFSISGR  198 (267)
Q Consensus       126 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~  198 (267)
                      ...  +..+..  .......+...+.+..+++-..++.|..+|...++........     ...........+  ++++.
T Consensus       104 ~g~--~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~  179 (306)
T 2p4o_A          104 DGT--VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN  179 (306)
T ss_dssp             TSC--EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT
T ss_pred             CCe--EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCC
Confidence            322  222211  1122334444455555555556788888887654211110010     000111234555  78887


Q ss_pred             EEEEEE-eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          199 LLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       199 ~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .|..+. ..+.|+.||......+.....+..  ......++++++|+++++....+.|.+++..|
T Consensus       180 ~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G  242 (306)
T 2p4o_A          180 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  242 (306)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             EEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence            665554 568999999754111100000000  01234578899999888777778899998765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.30  E-value=0.062  Score=45.39  Aligned_cols=160  Identities=14%  Similarity=0.180  Sum_probs=92.7

Q ss_pred             EEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEE-------eCCCCeEEEEecCCC---
Q 024451           49 VSCCQYVPD-EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI-------SGSNSRMFVSGSCDS---  117 (267)
Q Consensus        49 v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~~s~~~d~---  117 (267)
                      -..++|.|. ++.++++-...+.|++.|..++.........  .........+++       ++....++++...++   
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~--~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN--TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT--TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC--ccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            456888884 4444444444567888998877655443211  112335788888       865554666655442   


Q ss_pred             ---eEEEEeCCCcccce-----EEeeccccceeEEEEec-CCCEEEEeeCCCcEEEEeCC-------CCee---------
Q 024451          118 ---TARLWDTRVASRAV-----RTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIR-------TGHQ---------  172 (267)
Q Consensus       118 ---~i~iwd~~~~~~~~-----~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~-------~~~~---------  172 (267)
                         .|.+.+........     ..+.. -.....++++| ++.++++-..++.|..+|+.       ++..         
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence               25566533201111     12221 12456788999 45666677788899999987       4442         


Q ss_pred             --eEEEEeecCCCCCCcEEEEEEccCCCEEEEE-EeCCeEEEEeC
Q 024451          173 --LQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDT  214 (267)
Q Consensus       173 --~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i~d~  214 (267)
                        ...+... .  .......++|+|+++.|..+ +..+.|+.++.
T Consensus       298 g~~~~l~~~-~--~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          298 NTFKQLFTI-A--DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TTEEEEEEC-S--SSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cccceeEec-C--CCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence              1122211 1  12345789999999965554 45678888653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.20  E-value=0.095  Score=45.56  Aligned_cols=29  Identities=17%  Similarity=0.261  Sum_probs=23.1

Q ss_pred             cCC---CEEEEeeCCCcEEEEeCCCCeeeEEE
Q 024451          148 PDG---NRFGTGSDDGTCRLFDIRTGHQLQVY  176 (267)
Q Consensus       148 ~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~  176 (267)
                      .+|   +.++.++.+|.+.++|.++++.+...
T Consensus       318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (599)
T ss_dssp             TTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence            456   46777889999999999999876543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.12  E-value=0.14  Score=46.04  Aligned_cols=184  Identities=9%  Similarity=-0.028  Sum_probs=108.7

Q ss_pred             CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc---cceEEeeccccceeE
Q 024451           67 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---RAVRTFHGHEGDVNT  143 (267)
Q Consensus        67 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~i~~  143 (267)
                      ....|+..++.......+..      ....+..++++...++++.+-...+.|+.+++....   .....+.........
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~------~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G  475 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIP------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  475 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEEC------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             cccceeEeeccCCcceeeec------CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence            34557777776543333221      233467888887777888888888889888875321   112222223345678


Q ss_pred             EEEecCC-CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eC-CeEEEEeCCcccee
Q 024451          144 VKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SN-GDCYVWDTLLAKVV  220 (267)
Q Consensus       144 ~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~d-g~i~i~d~~~~~~~  220 (267)
                      +++.+.+ +++++-...+.|.+.+++.... ..+....    ......++++|.+..|+... .+ +.|...++......
T Consensus       476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~----l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~  550 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFREN----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  550 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECT----TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             eeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCC----CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence            9998866 4555666778999999875443 3332211    22468999999866665554 23 67888886543221


Q ss_pred             eecccccCCccceEEEEEECCCCCeEEEeE-CCCcEEEEecCceEe
Q 024451          221 LNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAFGGYRR  265 (267)
Q Consensus       221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~~~~~  265 (267)
                      ...    ...-..-..|+++|.+..|..+. ....|...++.|..|
T Consensus       551 ~lv----~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~  592 (791)
T 3m0c_C          551 SLV----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  592 (791)
T ss_dssp             EEE----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             EEE----eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence            111    11223457889987666555443 355677777766443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.11  E-value=0.15  Score=45.95  Aligned_cols=202  Identities=9%  Similarity=-0.002  Sum_probs=110.1

Q ss_pred             eeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++|++ ++.++++-...+.|..+++...... .  .....+.........+++.+.+..++++-...+.|.+.++.....
T Consensus       429 l~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-~--~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~  505 (791)
T 3m0c_C          429 LDTEVASNRIYWSDLSQRMICSTQLDRAHGV-S--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR  505 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE
T ss_pred             EeecccCCeeEEeeccceeEEEEeccCCCCC-c--ceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE
Confidence            56665 4455556556677777776532100 0  011112212233445777766656666667778999999876544


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-CeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE-EeeCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDD  159 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d  159 (267)
                      ...+.     ..-.....|++++..+.++.+-... ..|...++.. ......+.........|++++.++.|. +-...
T Consensus       506 ~~l~~-----~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~  579 (791)
T 3m0c_C          506 KTLFR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  579 (791)
T ss_dssp             EEEEE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEEEe-----CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-CceEEEEeCCCCCceEEEEecCCCeEEEEeCCC
Confidence            33332     1223467888988777777776443 6788888752 222222222234568899997655554 44556


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  217 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  217 (267)
                      ..|...++..... ..+....  ........+++.. +.++.+-...+.|...|..++
T Consensus       580 ~~I~~~d~dG~~~-~~v~~~~--~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          580 HSISSIDVNGGNR-KTILEDE--KRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             TEEEEEETTSCSC-EEEEECT--TTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             CcEEEEecCCCce-EEEecCC--CccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence            7899999865433 3332211  1122345666532 234444445577777775433

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.09  E-value=0.073  Score=42.27  Aligned_cols=221  Identities=5%  Similarity=-0.070  Sum_probs=124.9

Q ss_pred             CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-EEEeCCccccCCccc
Q 024451           18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTAD   96 (267)
Q Consensus        18 d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~   96 (267)
                      ...|+..++..... .    ....+. .......+.|.+.++.+..+-...+.|..++++.... ...+.     ..-..
T Consensus        12 ~~~I~~i~l~~~~~-~----~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-----~~l~~   80 (318)
T 3sov_A           12 RRDLRLVDATNGKE-N----ATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV-----SGLLS   80 (318)
T ss_dssp             EEEEEEEETTCTTS-C----CEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE-----ECCSC
T ss_pred             cCeEEEEECCCCce-E----EEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc-----CCCCC
Confidence            45788888865320 0    111111 2234668899986666666666778899998876521 11111     01123


Q ss_pred             eEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee--CCCcEEEEeCCCCeeeE
Q 024451           97 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQLQ  174 (267)
Q Consensus        97 i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~  174 (267)
                      ...+++.+..+.++.+-...+.|.++++.. ................++++|.+..+....  ..+.|...+++... ..
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG-~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~  158 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RF  158 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CE
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCC-CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eE
Confidence            456777766777888877888999998753 222222222334568899998655544433  35778888876432 22


Q ss_pred             EEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451          175 VYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  253 (267)
Q Consensus       175 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg  253 (267)
                      .+...    .......+++++++..|..+. ..+.|..+|....... .+..   .....-..+++.. +.++.+-...+
T Consensus       159 ~~~~~----~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~---~~~~~P~glav~~-~~lywtd~~~~  229 (318)
T 3sov_A          159 IIINS----EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVK---GSLPHPFALTLFE-DILYWTDWSTH  229 (318)
T ss_dssp             EEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEC---SCCSCEEEEEEET-TEEEEEETTTT
T ss_pred             EEEEC----CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE-EEec---CCCCCceEEEEeC-CEEEEEecCCC
Confidence            22211    123468999999777666554 4678999987532111 1110   1112234566643 34444444566


Q ss_pred             cEEEEec
Q 024451          254 NLKIWAF  260 (267)
Q Consensus       254 ~i~~w~~  260 (267)
                      .|..++.
T Consensus       230 ~V~~~~~  236 (318)
T 3sov_A          230 SILACNK  236 (318)
T ss_dssp             EEEEEET
T ss_pred             eEEEEEC
Confidence            6777765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.06  E-value=0.13  Score=44.59  Aligned_cols=59  Identities=19%  Similarity=0.268  Sum_probs=41.1

Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  223 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  223 (267)
                      ++.|.-||+.+++.+-...... .     ...-.....+..++.|+.||.++.||.++++.+.++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~-----~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-P-----LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-C-----CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-C-----CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence            6789999999988765443211 1     111112235678888999999999999999888665

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.04  E-value=0.015  Score=51.57  Aligned_cols=197  Identities=9%  Similarity=-0.026  Sum_probs=104.2

Q ss_pred             EEEEEEecCCCeeEEEeeCCCeEEEEeCCC----CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeC
Q 024451           49 VSCCQYVPDEDTHLITSSGDQTCVLWDITT----GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT  124 (267)
Q Consensus        49 v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~  124 (267)
                      +..++|.+.+..++++-...+.|+.+++..    ......+.     ........+++.+..++++++-...+.|.+.++
T Consensus       408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~-----~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~  482 (699)
T 1n7d_A          408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-----RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  482 (699)
T ss_dssp             CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC-----SCC--CCCEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred             eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe-----CCCCCcceEEEEeeCCcEEEEeccCCeEEEEec
Confidence            456788876655555555667898888875    11111111     011123446666556677777777788999987


Q ss_pred             CCcccceEEe-eccccceeEEEEecCCCEE-EEeeC-CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451          125 RVASRAVRTF-HGHEGDVNTVKFFPDGNRF-GTGSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF  201 (267)
Q Consensus       125 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l-~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  201 (267)
                      .. . ....+ .........++++|.+..| ++-.. .+.|..+++.... ...+..    ........++|++++..|.
T Consensus       483 dg-~-~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~----~~l~~PnGlavd~~~~~LY  555 (699)
T 1n7d_A          483 KG-V-KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT----ENIQWPNGITLDLLSGRLY  555 (699)
T ss_dssp             SS-C-CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESC----SSCSSCCCEEECTTTCCEE
T ss_pred             CC-C-ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEe----CCCCCccEEEEeccCCEEE
Confidence            53 2 22222 2222345788999865444 43322 3678877775432 222211    1122457899998766554


Q ss_pred             EE-EeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          202 AG-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       202 ~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      .+ ...+.|..+|+...... .+.... .....-..|++..+ .++.+....+.|..++.
T Consensus       556 ~aD~~~~~I~~~d~dG~~~~-~~~~~~-~~~~~P~glavd~~-~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          556 WVDSKLHSISSIDVNGGNRK-TILEDE-KRLAHPFSLAVFED-KVFWTDIINEAIFSANR  612 (699)
T ss_dssp             EEETTTTEEEEECSSSSCCE-EECCCS-SSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred             EEecCCCeEEEEccCCCceE-EEEecC-CcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence            44 45678999987532211 111100 00011223444433 44445555677888764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.04  E-value=0.14  Score=44.56  Aligned_cols=157  Identities=14%  Similarity=0.097  Sum_probs=90.0

Q ss_pred             EEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceE-EEEEeCCCCeEEEEec-----CCCeEEEEeCCCcccceEEee
Q 024451           62 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGS-----CDSTARLWDTRVASRAVRTFH  135 (267)
Q Consensus        62 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~s~~-----~d~~i~iwd~~~~~~~~~~~~  135 (267)
                      |+.++.|+.|..+|..+++.+......... ....+. +..+.  ++.+++..+     .++.|+.+|.++.+...+...
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~-~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIK-VGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCC-ccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            778889999999999999876654321100 000111 11122  344443332     478999999876544332221


Q ss_pred             cccc------------------------------------ce-eEEEEecCCCEEEEeeCC----------------CcE
Q 024451          136 GHEG------------------------------------DV-NTVKFFPDGNRFGTGSDD----------------GTC  162 (267)
Q Consensus       136 ~~~~------------------------------------~i-~~~~~~~~~~~l~~~~~d----------------~~i  162 (267)
                      ....                                    .+ ...++.+....+..+..+                ..|
T Consensus       201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv  280 (599)
T 1w6s_A          201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (599)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence            1100                                    01 134566777777766554                378


Q ss_pred             EEEeCCCCeeeEEEEeecCCC-----CCCcEEEEEEc-cCC---CEEEEEEeCCeEEEEeCCccceeee
Q 024451          163 RLFDIRTGHQLQVYYQQHGEN-----EIPHVTSIAFS-ISG---RLLFAGYSNGDCYVWDTLLAKVVLN  222 (267)
Q Consensus       163 ~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s-~~~---~~l~~g~~dg~i~i~d~~~~~~~~~  222 (267)
                      .-+|.++++..-.+...+...     ...++ -+... .+|   ..++.++.+|.++++|..+++.+..
T Consensus       281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~  348 (599)
T 1w6s_A          281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (599)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EEEeCCCCceeeEeecCCCccccccCCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence            999999998776543322111     00111 12222 467   4677788999999999988877654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.95  E-value=0.098  Score=41.41  Aligned_cols=220  Identities=8%  Similarity=-0.012  Sum_probs=123.1

Q ss_pred             CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC----CeeEEEeCCccccCCc
Q 024451           19 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----GLRTSVFGGEFQSGHT   94 (267)
Q Consensus        19 ~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~----~~~~~~~~~~~~~~~~   94 (267)
                      ..|+..|+....       ....+. .-.....+.|.+.++.++++-...+.|..+++..    ......+..     .-
T Consensus        10 ~~I~~i~~~~~~-------~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-----~~   76 (316)
T 1ijq_A           10 HEVRKMTLDRSE-------YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-----DI   76 (316)
T ss_dssp             SSEEEEETTSCC-------CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-----SC
T ss_pred             CeEEEEECCCcc-------eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-----CC
Confidence            358888876432       111122 2234678899887666666666778999999875    222222211     11


Q ss_pred             cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE-EeeCC-CcEEEEeCCCCee
Q 024451           95 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDD-GTCRLFDIRTGHQ  172 (267)
Q Consensus        95 ~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d-~~i~iwd~~~~~~  172 (267)
                      .....+++++.+++++++-...+.|.+.+... ................++++|.+..+. +.... +.|...+++. +.
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~  154 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VD  154 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CC
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCC-CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CC
Confidence            23456777765677888877888999998753 222222222234568899998655444 43333 6788888754 33


Q ss_pred             eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC
Q 024451          173 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  251 (267)
Q Consensus       173 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~  251 (267)
                      ...+...    .......+++++++..|..+. ..+.|..+|...... ..+... ......-..+++. .+.++.+-..
T Consensus       155 ~~~~~~~----~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~-~~~~~~P~giav~-~~~ly~~d~~  227 (316)
T 1ijq_A          155 IYSLVTE----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILED-EKRLAHPFSLAVF-EDKVFWTDII  227 (316)
T ss_dssp             EEEEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-TTTTSSEEEEEEE-TTEEEEEETT
T ss_pred             eEEEEEC----CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeec-CCccCCcEEEEEE-CCEEEEEECC
Confidence            2222211    223578999998877666554 457899999753211 111100 0011123456664 3555555555


Q ss_pred             CCcEEEEec
Q 024451          252 DTNLKIWAF  260 (267)
Q Consensus       252 dg~i~~w~~  260 (267)
                      .+.|..++.
T Consensus       228 ~~~V~~~~~  236 (316)
T 1ijq_A          228 NEAIFSANR  236 (316)
T ss_dssp             TTEEEEEET
T ss_pred             CCeEEEEeC
Confidence            667777763

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.95  E-value=0.12  Score=42.43  Aligned_cols=219  Identities=8%  Similarity=-0.032  Sum_probs=123.1

Q ss_pred             CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC----eeEEEeCCccccCCc
Q 024451           19 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG----LRTSVFGGEFQSGHT   94 (267)
Q Consensus        19 ~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~~~~   94 (267)
                      ..|+..++....       ... +......+..++|.+.++.+..+-...+.|+.+++...    .....+.     ...
T Consensus        92 ~~I~~i~l~~~~-------~~~-~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-----~~~  158 (400)
T 3p5b_L           92 HEVRKMTLDRSE-------YTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-----RDI  158 (400)
T ss_dssp             TEEEEECTTSCS-------CEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-----SSC
T ss_pred             ceeEEEccCCcc-------eeE-eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-----CCC
Confidence            467777765321       111 11233456789999876665556566788988888642    1222221     122


Q ss_pred             cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee--CCCcEEEEeCCCCee
Q 024451           95 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQ  172 (267)
Q Consensus        95 ~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~  172 (267)
                      .....+++....++++.+-...+.|.+.++.. ......+.........++++|.+..|....  ..+.|...+++....
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g-~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~  237 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  237 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTT-CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCC-CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence            34567778766778888888888999998763 222222222334468899999655544332  347888888864332


Q ss_pred             eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC
Q 024451          173 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  251 (267)
Q Consensus       173 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~  251 (267)
                       ..+..    ........+++++++..|..+. ..+.|..+|+...... .+... ......-..+++. .+.++.+-..
T Consensus       238 -~~~~~----~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~-~~~l~~P~gl~v~-~~~lywtd~~  309 (400)
T 3p5b_L          238 -YSLVT----ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILED-EKRLAHPFSLAVF-EDKVFWTDII  309 (400)
T ss_dssp             -EEEEC----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE-EEEEC-SSTTSSEEEEEEE-TTEEEEEESS
T ss_pred             -EEEEE----CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE-EEEeC-CCCCCCCEEEEEe-CCEEEEecCC
Confidence             22221    1223578999998877776664 4578999987532211 11100 0011122456652 3444555555


Q ss_pred             CCcEEEEe
Q 024451          252 DTNLKIWA  259 (267)
Q Consensus       252 dg~i~~w~  259 (267)
                      .+.|..++
T Consensus       310 ~~~V~~~~  317 (400)
T 3p5b_L          310 NEAIFSAN  317 (400)
T ss_dssp             SCSEEEEE
T ss_pred             CCeEEEEE
Confidence            66677665

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.94  E-value=0.11  Score=41.86  Aligned_cols=235  Identities=14%  Similarity=0.110  Sum_probs=109.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC---CCeeEEEeeCC-----CeEEE
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---EDTHLITSSGD-----QTCVL   73 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~~~d-----~~v~i   73 (267)
                      .++|.|+|+++++- .++.|.+++ ...  ....... ............++++|+   +..+.++-..+     +.|..
T Consensus        35 ~ia~~pdG~l~V~e-~~g~I~~i~-~g~--~~~~~~~-~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           35 ALAFLPDGGMLIAE-RPGRIRLFR-EGR--LSTYAEL-SVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             EEEECTTSCEEEEE-TTTEEEEEE-TTE--EEEEEEC-CCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             EEEEcCCCeEEEEe-CCCeEEEEE-CCC--ccEeecc-eEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            46899999977664 558898887 211  0000000 011122345677899986   44444443332     56777


Q ss_pred             EeCCCCe---eEEE---eCCccccCCccceEEEEEeCCCCeEEEEecCC-------------CeEEEEeCCCc-------
Q 024451           74 WDITTGL---RTSV---FGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-------------STARLWDTRVA-------  127 (267)
Q Consensus        74 wd~~~~~---~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-------------~~i~iwd~~~~-------  127 (267)
                      ++.....   ....   ++......|.  ...+.+.+ ++.++++.+..             +.|.-++....       
T Consensus       110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          110 LRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            7776431   1111   1100011232  24677776 45676664321             44544444310       


Q ss_pred             -----ccceEEeeccccceeEEEEec-CCCEEEEeeCCCcE------EEEeCCCCeee---------------EEEEeec
Q 024451          128 -----SRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTC------RLFDIRTGHQL---------------QVYYQQH  180 (267)
Q Consensus       128 -----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i------~iwd~~~~~~~---------------~~~~~~~  180 (267)
                           ........++. ....++|+| ++.++++-.....+      .|.-+..+...               .-.... 
T Consensus       187 ~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-  264 (352)
T 2ism_A          187 LGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-  264 (352)
T ss_dssp             TTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred             cCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence                 00011111232 246788999 66666554332221      12222222100               000000 


Q ss_pred             CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce---eeecccccCCccceEEEEEECCCCCeEEEeE
Q 024451          181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV---VLNLGSLQNSHEGRITCLGLSADGSALCTGS  250 (267)
Q Consensus       181 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs  250 (267)
                        ........++| .+|..+++....+.|...++.....   ......+... ...+..+++.|||.++++..
T Consensus       265 --~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 --PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-FGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             --TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-SCCEEEEEECTTSCEEEEEC
T ss_pred             --CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-CCCeeEEEECCCCcEEEEEe
Confidence              00112456666 4666666666667777777653321   0001111111 24688999999998777653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.92  E-value=0.12  Score=41.79  Aligned_cols=234  Identities=12%  Similarity=0.063  Sum_probs=113.5

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccc--cccCCeeeEEEEEEecC---CCeeEEEeeC---C----C
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR--MLSGHKGYVSCCQYVPD---EDTHLITSSG---D----Q   69 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~---~~~~l~s~~~---d----~   69 (267)
                      .++|.|+|+++++- .++.|.+++...      ..+...  ...........++++|+   +..+.++-+.   +    .
T Consensus        33 ~ia~~pdG~l~V~e-~~g~I~~~d~~G------~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           33 SIAPLGGGRYLVTE-RPGRLVLISPSG------KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             EEEEEETTEEEEEE-TTTEEEEECSSC------EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             EEEEcCCCeEEEEe-CCCEEEEEeCCC------ceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            46789999976664 458888886321      101110  11112244678899986   4444444332   3    5


Q ss_pred             eEEEEeCCCC-----eeEEEeC-CccccCCccceEEEEEeCCCCeEEEEecCC-------------CeEEEEeCCCcc--
Q 024451           70 TCVLWDITTG-----LRTSVFG-GEFQSGHTADVLSVSISGSNSRMFVSGSCD-------------STARLWDTRVAS--  128 (267)
Q Consensus        70 ~v~iwd~~~~-----~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-------------~~i~iwd~~~~~--  128 (267)
                      .|..|+....     .....+. ......|.  ...+.+.+ ++.++++.+..             |.|.-.+.....  
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~  182 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA  182 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence            6777776543     1111111 00011232  34577776 45676664421             344444432110  


Q ss_pred             -----cceEEeeccccceeEEEEec-CCCEEEEeeC-CC--cEEEEeCCCCee---------------eEEEEeecCCCC
Q 024451          129 -----RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSD-DG--TCRLFDIRTGHQ---------------LQVYYQQHGENE  184 (267)
Q Consensus       129 -----~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-d~--~i~iwd~~~~~~---------------~~~~~~~~~~~~  184 (267)
                           .......++.. ...++|+| ++.++++-.. ++  .|.+.  ..+..               ..-.... . ..
T Consensus       183 ~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~-~-~~  257 (354)
T 3a9g_A          183 DNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDT-G-SE  257 (354)
T ss_dssp             TSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEEC-T-TC
T ss_pred             CCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeec-C-CC
Confidence                 00111123332 36789999 6666655332 22  23322  22110               0000000 0 01


Q ss_pred             CCcEEEEEE-------ccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeE
Q 024451          185 IPHVTSIAF-------SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  250 (267)
Q Consensus       185 ~~~v~~~~~-------s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs  250 (267)
                      ......++|       ..+|.++++....+.|...++.....+.....+...-...+..+++.|||.+.++..
T Consensus       258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            123567777       356777777767788888887643222111111112235688999999998777654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.91  E-value=0.11  Score=43.99  Aligned_cols=156  Identities=10%  Similarity=0.093  Sum_probs=89.0

Q ss_pred             eEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccceEEeecc----ccceeEEEE-------ecCCCEEEEeeCCC----
Q 024451           97 VLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EGDVNTVKF-------FPDGNRFGTGSDDG----  160 (267)
Q Consensus        97 i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~i~~~~~-------~~~~~~l~~~~~d~----  160 (267)
                      ...++++|. .++++++......|++.|.+. . .+..+..-    ......++|       +++++.|+.+...+    
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~-~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKN-R-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTT-T-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCC-C-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            457888873 566777666667788888763 2 23333211    124788999       99998666555433    


Q ss_pred             ---cEEEEeCCC-Ceee-----EEEEeecCCCCCCcEEEEEEccC-CCEEEEEEeCCeEEEEeCC-------ccce----
Q 024451          161 ---TCRLFDIRT-GHQL-----QVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTL-------LAKV----  219 (267)
Q Consensus       161 ---~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~-------~~~~----  219 (267)
                         .|.+++... +...     ..+.. .     .....++++|+ +.++++-..++.|+.+|..       .++.    
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~-----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAA-Y-----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEE-E-----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             cCceEEEEecCCCCceeecccceeecc-C-----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence               255665333 1111     11111 1     12356788995 5555666678899999976       2322    


Q ss_pred             -------eeecccccCCccceEEEEEECCCCCeEEEe-ECCCcEEEEecCc
Q 024451          220 -------VLNLGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKIWAFGG  262 (267)
Q Consensus       220 -------~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg-s~dg~i~~w~~~~  262 (267)
                             ...+..  ......-..++|+|+|++|..+ +....|+.+++++
T Consensus       293 ~~~~~g~~~~l~~--~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          293 VKNNPNTFKQLFT--IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             GGGCTTTEEEEEE--CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccccccccceeEe--cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence                   001111  1112334689999999954443 4566777766543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.78  E-value=0.28  Score=44.02  Aligned_cols=202  Identities=11%  Similarity=0.023  Sum_probs=113.0

Q ss_pred             eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc----cccCCccceEEEEEeCCCCeEEEEecCCCeEEE
Q 024451           46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE----FQSGHTADVLSVSISGSNSRMFVSGSCDSTARL  121 (267)
Q Consensus        46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~i  121 (267)
                      ...|.++...+++  .|-.|+.++-|..++..+..........    ...-....|.++.... ++.+. .|+.++-|..
T Consensus       312 ~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lW-igt~~~Gl~~  387 (781)
T 3v9f_A          312 NASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGKLW-IGTDGGGINV  387 (781)
T ss_dssp             SSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSCEE-EEEBSSCEEE
T ss_pred             CCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCCEE-EEeCCCcEEE
Confidence            4568888777654  3556776777888887755322211000    0011234577877764 34444 4454556788


Q ss_pred             EeCCCcccceEEe----eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC
Q 024451          122 WDTRVASRAVRTF----HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  197 (267)
Q Consensus       122 wd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  197 (267)
                      ++....  ....+    ......|.++...+++.+.+ |+.++-+..+|.++++.. .+.. . ......|.++..++++
T Consensus       388 ~~~~~~--~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~-~-~~~~~~v~~i~~d~~g  461 (781)
T 3v9f_A          388 FENGKR--VAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-IIEL-E-KNELLDVRVFYEDKNK  461 (781)
T ss_dssp             EETTEE--EEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-ECCS-T-TTCCCCEEEEEECTTS
T ss_pred             EECCCC--eEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-Eecc-C-CCCCCeEEEEEECCCC
Confidence            886521  12211    11235688888877776554 666677888998765422 1111 0 1123468888888877


Q ss_pred             CEEEEEEeCCeEEEEeCCccceeeecccc-cCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          198 RLLFAGYSNGDCYVWDTLLAKVVLNLGSL-QNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       198 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      .+.++. . +.|..||....+...-.... .......|.++...++|++.+....+| +..|+.
T Consensus       462 ~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~  522 (781)
T 3v9f_A          462 KIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTP  522 (781)
T ss_dssp             EEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECT
T ss_pred             CEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeC
Confidence            755544 4 56889997654432111000 011135789999999998776433244 444553

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.45  E-value=0.41  Score=41.83  Aligned_cols=186  Identities=13%  Similarity=0.022  Sum_probs=103.1

Q ss_pred             CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEE
Q 024451           67 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF  146 (267)
Q Consensus        67 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~  146 (267)
                      ..+.|+.-++..........    ...-.....+++++.++.++.+-...+.|..+++.........+.........+++
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~----~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv   91 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIV----VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC   91 (619)
T ss_dssp             CSSBEEEECCC-------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred             ccccEEEEeCCCCcceEEEE----EcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence            34567777776432111111    11223467888888778888887778888888875321112223222245788999


Q ss_pred             ecCCC-EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe--CCeEEEEeCCccceeeec
Q 024451          147 FPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS--NGDCYVWDTLLAKVVLNL  223 (267)
Q Consensus       147 ~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~  223 (267)
                      .+.++ .+++-...+.|.+.+++.... ..+....    ......++++|.+..|.....  .+.|...++...... .+
T Consensus        92 D~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~----l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~-~l  165 (619)
T 3s94_A           92 DWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQE----LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-II  165 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS----CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EE
T ss_pred             EecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCC----CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE-EE
Confidence            98544 555666788999999875433 2232211    123578899987666655442  356666665422111 11


Q ss_pred             ccccCCccceEEEEEECCCCCeEEEe-ECCCcEEEEecCceEe
Q 024451          224 GSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKIWAFGGYRR  265 (267)
Q Consensus       224 ~~~~~~~~~~v~~~~~~p~~~~l~sg-s~dg~i~~w~~~~~~~  265 (267)
                      .   ...-..-..|+++|+++.|..+ +..+.|...++.|..|
T Consensus       166 ~---~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~  205 (619)
T 3s94_A          166 I---NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR  205 (619)
T ss_dssp             E---CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE
T ss_pred             E---eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc
Confidence            0   0112235789999865555443 4466788888777554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.15  E-value=0.32  Score=39.09  Aligned_cols=104  Identities=20%  Similarity=0.269  Sum_probs=60.3

Q ss_pred             ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEee-cCCCCCCcEEEEEEccC---CCEEEEEEeC------CeE
Q 024451          140 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ-HGENEIPHVTSIAFSIS---GRLLFAGYSN------GDC  209 (267)
Q Consensus       140 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~---~~~l~~g~~d------g~i  209 (267)
                      .-..++|.|+|+++++ ..++.|.+++  +++. ..+... ...........++|+|+   +..|.+....      +.|
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            3578999999986665 4568999998  3432 222111 11112235789999998   5555555442      567


Q ss_pred             EEEeCCcc-----ceeee-ccc-ccCCccceEEEEEECCCCCeEEEe
Q 024451          210 YVWDTLLA-----KVVLN-LGS-LQNSHEGRITCLGLSADGSALCTG  249 (267)
Q Consensus       210 ~i~d~~~~-----~~~~~-~~~-~~~~~~~~v~~~~~~p~~~~l~sg  249 (267)
                      ..|+....     +.+.. +.. ....|..  ..++|.|+|.+.++-
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~--~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSG--GRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCC--CCEEECTTSCEEEEC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCC--ceEEECCCCCEEEEE
Confidence            77776532     11111 110 0112433  579999999877664

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.11  E-value=0.94  Score=42.66  Aligned_cols=237  Identities=12%  Similarity=0.149  Sum_probs=114.3

Q ss_pred             CCeEEEccCCCeEEEeecCCCCCCCCC-CcccccccCCeeeEEEEEEecC---CCeeEEEee---CCCeEEEEeCCCCee
Q 024451            9 GQSVACGGLDSVCSIFNLNSPTDKDGN-LPVSRMLSGHKGYVSCCQYVPD---EDTHLITSS---GDQTCVLWDITTGLR   81 (267)
Q Consensus         9 g~~l~~~~~d~~v~~w~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~~---~d~~v~iwd~~~~~~   81 (267)
                      +.+|..|+.-|.=.+|.+......+.. ......+ ..-++|..+.....   +...|++++   .+|++++..-.-+..
T Consensus       337 ~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~  415 (1158)
T 3ei3_A          337 NGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIH  415 (1158)
T ss_dssp             TTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEE
T ss_pred             CCEEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEE
Confidence            346778888777777776543221111 1122222 23467777766432   223455443   367888775432221


Q ss_pred             EE-EeCCccccCCccceEEEEEeC--CCCeEEEEecCCCeEEEEeCCCcccceEEee--ccccceeEEEEec-CCCEEEE
Q 024451           82 TS-VFGGEFQSGHTADVLSVSISG--SNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP-DGNRFGT  155 (267)
Q Consensus        82 ~~-~~~~~~~~~~~~~i~~~~~~~--~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~  155 (267)
                      .. .+  +  ......++++....  ....+++.+-.+.+ .|+.+.. . .+....  +-......+.... .++.++ 
T Consensus       416 ~~~~~--~--l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~-e-~veev~~~gf~~~~~TL~~~~l~~~~iv-  487 (1158)
T 3ei3_A          416 EHASI--D--LPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNG-E-EVEETELMGFVDDQQTFFCGNVAHQQLI-  487 (1158)
T ss_dssp             EEEEE--C--CCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEET-T-EEEEECCTTCCSSSCEEEEEEETTTEEE-
T ss_pred             EEEee--c--CCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeC-C-cccccccccccCCCCcEEEEEcCCCeEE-
Confidence            11 11  1  11234555554321  12345555444444 4554321 1 121111  1111111222111 122232 


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEE
Q 024451          156 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT  235 (267)
Q Consensus       156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  235 (267)
                      --....|++.+......+..+..   . ....|...+..  +..++.+. ++.+..+.+..... .....  ......|.
T Consensus       488 QVt~~~Irli~~~~~~~~~~w~~---p-~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L-~~~~~--~~l~~evs  557 (1158)
T 3ei3_A          488 QITSASVRLVSQEPKALVSEWKE---P-QAKNISVASCN--SSQVVVAV-GRALYYLQIHPQEL-RQISH--TEMEHEVA  557 (1158)
T ss_dssp             EEESSCEEEEESSSCCEEEEECC---T-TCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEE-EEEEE--EECSSCEE
T ss_pred             EEecCEEEEEECCCCeEEEEEEC---C-CCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCce-eeecc--cCCCCceE
Confidence            22344678887654434333321   1 11235555433  34566664 67888876643321 11111  12345799


Q ss_pred             EEEECCC------CCeEEEeEC-CCcEEEEecCceE
Q 024451          236 CLGLSAD------GSALCTGSW-DTNLKIWAFGGYR  264 (267)
Q Consensus       236 ~~~~~p~------~~~l~sgs~-dg~i~~w~~~~~~  264 (267)
                      |+++.|.      ++++|.|.+ |++++|+++..+.
T Consensus       558 cl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~  593 (1158)
T 3ei3_A          558 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE  593 (1158)
T ss_dssp             EEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence            9999864      479999997 9999999987654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.11  E-value=0.25  Score=39.83  Aligned_cols=103  Identities=12%  Similarity=0.031  Sum_probs=59.4

Q ss_pred             ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEee-cCCCCCCcEEEEEEccC---CCEEEEEEe----C----C
Q 024451          140 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ-HGENEIPHVTSIAFSIS---GRLLFAGYS----N----G  207 (267)
Q Consensus       140 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~---~~~l~~g~~----d----g  207 (267)
                      .-..++|.|+|+++++ ..++.|+++|. +++  ..+... ...........++++|+   +..|.+...    +    .
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            4578999999986655 55689999973 444  222211 11111235789999997   555555443    2    5


Q ss_pred             eEEEEeCCcc-------ceeee-cccccCCccceEEEEEECCCCCeEEEe
Q 024451          208 DCYVWDTLLA-------KVVLN-LGSLQNSHEGRITCLGLSADGSALCTG  249 (267)
Q Consensus       208 ~i~i~d~~~~-------~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~sg  249 (267)
                      .|..|+....       +.+.. +. ....|.  -..++|.|||.+.++-
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~-~~~~h~--~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIP-GAYIHN--GGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEE-CCSSCC--CCCEEECTTSCEEEEC
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCC-CCCCcC--CceEEECCCCcEEEEE
Confidence            6777775432       11111 11 012243  2568999999877764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.98  E-value=0.44  Score=37.78  Aligned_cols=231  Identities=11%  Similarity=0.051  Sum_probs=111.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++.|.+++..++ ++.++.|  |...... ..- .+...........+.++.|.+ + ..+ .++.++.|..- .+.++.
T Consensus        40 ~v~~~~~~~~~~-~G~~g~i--~~s~DgG-~tW-~~~~~~~~~~~~~~~~i~~~~-~-~~~-~~g~~g~i~~S-~DgG~t  110 (327)
T 2xbg_A           40 DMSFIDRHHGWL-VGVNATL--METRDGG-QTW-EPRTLVLDHSDYRFNSVSFQG-N-EGW-IVGEPPIMLHT-TDGGQS  110 (327)
T ss_dssp             EEEESSSSCEEE-EETTTEE--EEESSTT-SSC-EECCCCCSCCCCEEEEEEEET-T-EEE-EEEETTEEEEE-SSTTSS
T ss_pred             EEEECCCCcEEE-EcCCCeE--EEeCCCC-CCC-eECCCCCCCCCccEEEEEecC-C-eEE-EEECCCeEEEE-CCCCCC
Confidence            456766677677 4566754  3222111 000 011111112345688888876 2 333 34556655331 122211


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeE-EEEeCCCcccceEEe-eccccceeEEEEecCCCEEEEeeCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA-RLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDD  159 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i-~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d  159 (267)
                      =......  ..+...+..+.+.+ .++.++.+. ++.| +-.|   ........ .++...+..+.+.|++.+++.+...
T Consensus       111 W~~~~~~--~~~~~~~~~i~~~~-~~~~~~~~~-~g~v~~S~D---gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G  183 (327)
T 2xbg_A          111 WSQIPLD--PKLPGSPRLIKALG-NGSAEMITN-VGAIYRTKD---SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRG  183 (327)
T ss_dssp             CEECCCC--TTCSSCEEEEEEEE-TTEEEEEET-TCCEEEESS---TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTS
T ss_pred             ceECccc--cCCCCCeEEEEEEC-CCCEEEEeC-CccEEEEcC---CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCC
Confidence            0111000  01223355666654 345555554 4543 3333   22222222 2345568899999988877766544


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      +..+-+|-. +..-....    ......+..+.+++++..++++ .+|.+++.+...++.-.............+..+++
T Consensus       184 ~~~~S~d~g-G~tW~~~~----~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~  257 (327)
T 2xbg_A          184 SFYSTWEPG-QTAWEPHN----RTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY  257 (327)
T ss_dssp             SEEEEECTT-CSSCEEEE----CCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred             cEEEEeCCC-CCceeECC----CCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence            444444421 11111111    1122357888899988766554 67887776422122111111000012335888999


Q ss_pred             CCCCCeEEEeECCCcE
Q 024451          240 SADGSALCTGSWDTNL  255 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i  255 (267)
                      .|++++++.+. +|.+
T Consensus       258 ~~~~~~~~~g~-~g~i  272 (327)
T 2xbg_A          258 RTPNEVWLAGG-AGAL  272 (327)
T ss_dssp             SSSSCEEEEES-TTCE
T ss_pred             cCCCEEEEEeC-CCeE
Confidence            98888877654 6655

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.93  E-value=0.78  Score=40.13  Aligned_cols=195  Identities=10%  Similarity=-0.002  Sum_probs=112.1

Q ss_pred             ceeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      .++|++. +.++.+-..++.|..+++....       ....+.........+++.+.++.+.++-...+.|.+.+++...
T Consensus        41 ~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-------~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~  113 (628)
T 4a0p_A           41 ALDFDVTDNRIYWTDISLKTISRAFMNGSA-------LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH  113 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEECCCCC-------cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc
Confidence            4677764 4555565667888888765321       1111111112344566666555555666667889988887554


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEe-cCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE-EeeC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSD  158 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~  158 (267)
                      ....+..     .-.....++++|..+.++.+- +..+.|...++.. . ....+.........++++++++.|. +-..
T Consensus       114 ~~~l~~~-----~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG-~-~~~~l~~~~~~P~GlalD~~~~~LY~aD~~  186 (628)
T 4a0p_A          114 RQVLVWK-----DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG-S-ERTTLVPNVGRANGLTIDYAKRRLYWTDLD  186 (628)
T ss_dssp             CEEEECS-----SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-C-SCEEEECSCSSEEEEEEETTTTEEEEEETT
T ss_pred             EEEEEeC-----CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC-C-ceEEEECCCCCcceEEEccccCEEEEEECC
Confidence            3333211     223457888998777777775 3356777777652 2 2222322344568899999765554 4456


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA  217 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  217 (267)
                      .+.|...|++.... ..+.. .    ......+++.. +..+.+-...+.|...|..++
T Consensus       187 ~~~I~~~d~dG~~~-~v~~~-~----l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          187 TNLIESSNMLGLNR-EVIAD-D----LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             TTEEEEEETTSCSC-EEEEE-C----CSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             CCEEEEEcCCCCce-EEeec-c----CCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence            78899999875443 33322 1    12345666654 344444445678888885443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.87  E-value=0.37  Score=35.99  Aligned_cols=108  Identities=11%  Similarity=0.039  Sum_probs=62.6

Q ss_pred             cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCee-----eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEe
Q 024451          139 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD  213 (267)
Q Consensus       139 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d  213 (267)
                      ..+..++|+|+|.+.+.  .+|.+.-.+..+.+.     .........-  . .-.++.|+++|.+.++  .||.|+-++
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw--~-~F~a~~fD~~G~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGW--N-QFQFLFFDPNGYLYAV--SKDKLYKAS  113 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCG--G-GCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccc--c-cceEEEECCCCCEEEe--CCCEEEEeC
Confidence            35779999999887666  666655555433110     0000110000  0 1367889999998888  679998887


Q ss_pred             CCccceeeecccccC---CccceEEEEEECCCCCeEEEeECCCcE
Q 024451          214 TLLAKVVLNLGSLQN---SHEGRITCLGLSADGSALCTGSWDTNL  255 (267)
Q Consensus       214 ~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~sgs~dg~i  255 (267)
                      ..+...-.-...-..   ..=..+..|.|.|+|.+.+..  |+.+
T Consensus       114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            533211100000000   011457999999999988876  6764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.36  E-value=1  Score=37.44  Aligned_cols=231  Identities=11%  Similarity=0.201  Sum_probs=127.5

Q ss_pred             eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe--eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC-Cee
Q 024451            5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK--GYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLR   81 (267)
Q Consensus         5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~   81 (267)
                      .+|..+.|+.-. ..++.++|++...          .++.|.  ..|..=.|....  .|+-. .+..|.-|+++. ..+
T Consensus        73 MnP~~~iiALra-g~~lQiFnle~K~----------klks~~~~e~VvfWkWis~~--~l~lV-T~taVyHWsi~~~s~P  138 (494)
T 1bpo_A           73 MNPASKVIALKA-GKTLQIFNIEMKS----------KMKAHTMTDDVTFWKWISLN--TVALV-TDNAVYHWSMEGESQP  138 (494)
T ss_dssp             ECSSSSCEEEEE-TTEEEEEETTTTE----------EEEEEECSSCCCEEEEEETT--EEEEE-CSSEEEEEESSSSCCC
T ss_pred             eCCCCcEEEEec-CCeEEEEchHHhh----------hhcceecCCCceEEEecCCC--eEEEE-cCCeeEEecccCCCCc
Confidence            577777777664 6788888886421          122221  234444565433  23333 245799999963 234


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEE-Ee------cCCCeEEEEeCCCcccceEEeeccccceeEEEEecC---CC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFV-SG------SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD---GN  151 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-s~------~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~  151 (267)
                      ..++...... ....|.....++. .+.++ +|      ...|.+.+|+.+  ++....+.||......+.+..+   .+
T Consensus       139 ~kvFdR~~~L-~~~QIInY~~d~~-~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~sQ~ieGhaa~F~~~~~~g~~~~~~  214 (494)
T 1bpo_A          139 VKMFDRHSSL-AGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEEST  214 (494)
T ss_dssp             EEEEECCGGG-TTCEEEEEEECTT-SSEEEEEEEEEETTEEEEEEEEEEST--TCCEEEECCSEEEEEEEECTTCSSEEE
T ss_pred             hhheecchhc-ccceEEEEEECCC-CCeEEEEeecccCCcccceEEEeecc--ccccchheeeeeeeEEEecCCCCCCce
Confidence            4444321111 1345666666643 33333 22      135778899876  3456677888765544443211   12


Q ss_pred             EEEEeeC---CCcEEEEeCCCC--------e-eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce
Q 024451          152 RFGTGSD---DGTCRLFDIRTG--------H-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  219 (267)
Q Consensus       152 ~l~~~~~---d~~i~iwd~~~~--------~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~  219 (267)
                      .|.-+.+   .++++|-++...        + ....++..  +.......++..++....+..-+.-|.+++||++++..
T Consensus       215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp--e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP--EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC  292 (494)
T ss_dssp             EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT--TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc--ccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence            3333333   278999988542        1 11111111  11123456778888888898889999999999999887


Q ss_pred             eeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          220 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       220 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      +..-    .--.+.|...+-+....-++.-...|.|.--.
T Consensus       293 i~~n----rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~  328 (494)
T 1bpo_A          293 IYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLSVC  328 (494)
T ss_dssp             EEEE----ECCSSCEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred             eeee----cccCCceEEecccCCCCcEEEEccCceEEEEE
Confidence            6533    12334555555544444444445666655443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.21  E-value=0.8  Score=35.50  Aligned_cols=184  Identities=13%  Similarity=0.160  Sum_probs=88.4

Q ss_pred             CeeEEEeeCC-----CeEEEEeCCCCe---eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-----eEEEEeCC
Q 024451           59 DTHLITSSGD-----QTCVLWDITTGL---RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTR  125 (267)
Q Consensus        59 ~~~l~s~~~d-----~~v~iwd~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-----~i~iwd~~  125 (267)
                      +.+++.|+.+     ..+.+||..+..   -...-.  ....  ..-.++...  ++++++.|+.++     .+.++|+.
T Consensus        63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~--~p~~--r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~  136 (301)
T 2vpj_A           63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAP--MNVR--RGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPN  136 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECC--CSSC--CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCC--CCCC--ccceeEEEE--CCEEEEEcccCCCcccceEEEEcCC
Confidence            3566666654     458899988765   332211  1111  111122222  457778777543     57788875


Q ss_pred             CcccceEEeecc-ccc-eeEEEEecCCCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC
Q 024451          126 VASRAVRTFHGH-EGD-VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR  198 (267)
Q Consensus       126 ~~~~~~~~~~~~-~~~-i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  198 (267)
                      ...  ...+... ... -.++.. -+++.++.|+.+     ..+.+||+.+.+-...  ... .........+.  .++.
T Consensus       137 ~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~--~~~-p~~r~~~~~~~--~~~~  208 (301)
T 2vpj_A          137 IDQ--WSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV--TPM-ATKRSGAGVAL--LNDH  208 (301)
T ss_dssp             TTE--EEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE--CCC-SSCCBSCEEEE--ETTE
T ss_pred             CCe--EEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeC--CCC-CcccccceEEE--ECCE
Confidence            322  2222111 111 122222 266777777754     4588899887643221  111 11111112222  2566


Q ss_pred             EEEEEEeC-----CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC-----cEEEEec
Q 024451          199 LLFAGYSN-----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKIWAF  260 (267)
Q Consensus       199 ~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg-----~i~~w~~  260 (267)
                      +++.|+.+     ..+.+||..+.+-.. ...++..... ..++.+  ++++++.|+.++     .+.+|++
T Consensus       209 i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r~~-~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          209 IYVVGGFDGTAHLSSVEAYNIRTDSWTT-VTSMTTPRCY-VGATVL--RGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             EEEECCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBS-CEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred             EEEEeCCCCCcccceEEEEeCCCCcEEE-CCCCCCcccc-eeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence            77777653     468899986543211 1111111111 112222  677778887663     3555554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.21  E-value=1.1  Score=37.03  Aligned_cols=116  Identities=16%  Similarity=0.146  Sum_probs=73.2

Q ss_pred             ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCee----------eEEEEeecC--C-CCCCcEEEEEEccC---CCEEEEE
Q 024451          140 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ----------LQVYYQQHG--E-NEIPHVTSIAFSIS---GRLLFAG  203 (267)
Q Consensus       140 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~--~-~~~~~v~~~~~s~~---~~~l~~g  203 (267)
                      .+..+..+|+|+++|..+ +..|.|-.+-.+..          ++......+  . ....+|..+.|+|-   +..|++=
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            578899999999998876 45888888763221          111111111  0 12356999999985   5689999


Q ss_pred             EeCCeEEEEeCCccc-eeeecccc-----cCCccceEEEEEECCCCCeEEEeE--CCCcEE
Q 024451          204 YSNGDCYVWDTLLAK-VVLNLGSL-----QNSHEGRITCLGLSADGSALCTGS--WDTNLK  256 (267)
Q Consensus       204 ~~dg~i~i~d~~~~~-~~~~~~~~-----~~~~~~~v~~~~~~p~~~~l~sgs--~dg~i~  256 (267)
                      .+|+.|++||+.... .+..+...     .......|.+++|.+++-.|...+  .+|.|.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence            999999999987521 11111000     012236789999999877666544  666654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.12  E-value=1.2  Score=37.14  Aligned_cols=107  Identities=14%  Similarity=0.106  Sum_probs=61.0

Q ss_pred             ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC----CCCCCcEEEEEEccC---CCEEEEEEe-------
Q 024451          140 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG----ENEIPHVTSIAFSIS---GRLLFAGYS-------  205 (267)
Q Consensus       140 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~---~~~l~~g~~-------  205 (267)
                      ....++|.|+|+++++-...+.|.+++..+++... +.....    .........++|+|+   +..|.....       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~-~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKT-VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE-EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45789999999987775544578888765444322 211110    012345789999996   555555543       


Q ss_pred             ------CCeEEEEeCCcc-------ceeee-cccccCCccceEEEEEECCCCCeEEEeE
Q 024451          206 ------NGDCYVWDTLLA-------KVVLN-LGSLQNSHEGRITCLGLSADGSALCTGS  250 (267)
Q Consensus       206 ------dg~i~i~d~~~~-------~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~sgs  250 (267)
                            ...|.-|+....       +.+.. +.. ...|.  ...|+|.|||++.++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~--~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQ--SGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCC--EEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCC--CCeEeECCCCeEEEEEC
Confidence                  234555553211       11211 111 12353  58899999998777644

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.97  E-value=1.3  Score=36.60  Aligned_cols=148  Identities=16%  Similarity=0.200  Sum_probs=84.0

Q ss_pred             eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-----------
Q 024451           61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------  129 (267)
Q Consensus        61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-----------  129 (267)
                      .++.+ .++.||.=++..+..-+.+..... -.-..+..+..+++ +.+++..+ +..|.|-.+.....           
T Consensus        34 ~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~-i~f~~i~qlvlSps-G~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           34 RIVFI-QDNIIRWYNVLTDSLYHSLNFSRH-LVLDDTFHVISSTS-GDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             EEEEE-ETTEEEEEETTTCSSCEEEECTTT-CCCCTTCEEEECTT-SSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred             EEEEE-ECCEEEEEECCCCCcceEEecCcc-cccCceeEEEECCC-CCEEEEec-CCeEEEEEecCccccCccccccccc
Confidence            34433 347788777763322222211100 01124566777764 55555544 44788887652210           


Q ss_pred             ceEEeec------cccceeEEEEecC---CCEEEEeeCCCcEEEEeCCCCeee-EEEEeec----CCCCCCcEEEEEEcc
Q 024451          130 AVRTFHG------HEGDVNTVKFFPD---GNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQH----GENEIPHVTSIAFSI  195 (267)
Q Consensus       130 ~~~~~~~------~~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~----~~~~~~~v~~~~~s~  195 (267)
                      ..+.+.-      ...+|..+.|||-   +..+++-..|+.||+||+...... ..+.+..    .......+.+++|.+
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~  189 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK  189 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred             ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence            1122221      2457999999995   468999999999999999753211 1111110    011124689999999


Q ss_pred             CCCEEEEEE--eCCeEEEE
Q 024451          196 SGRLLFAGY--SNGDCYVW  212 (267)
Q Consensus       196 ~~~~l~~g~--~dg~i~i~  212 (267)
                      ++-.|.+.+  .+|.|+-.
T Consensus       190 ~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          190 DGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TSSCEEEEECTTSCEEEEE
T ss_pred             CCcEEEEEecCCCCCEEEE
Confidence            887666655  77888764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.94  E-value=0.98  Score=35.05  Aligned_cols=187  Identities=13%  Similarity=0.144  Sum_probs=88.8

Q ss_pred             CCCeEEEccCCC-----eEEEeecCCCCCC-CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC-----eEEEEeC
Q 024451            8 TGQSVACGGLDS-----VCSIFNLNSPTDK-DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-----TCVLWDI   76 (267)
Q Consensus         8 ~g~~l~~~~~d~-----~v~~w~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-----~v~iwd~   76 (267)
                      ++.+++.||.++     .+.+||.....=. ...++..  ...|.    ++.+   ++..++.|+.++     .+.+||.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~----~~~~---~~~iyv~GG~~~~~~~~~~~~~d~  131 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR--RSTLG----AAVL---NGLLYAVGGFDGSTGLSSVEAYNI  131 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSC--CBSCE----EEEE---TTEEEEEEEECSSCEEEEEEEEET
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcc--ccceE----EEEE---CCEEEEEcCCCCCccCceEEEEeC
Confidence            667788888653     4667776532100 0011111  11232    2222   234566666543     4778888


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-------CeEEEEeCCCcccceEEeecccc--ceeEEEEe
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-------STARLWDTRVASRAVRTFHGHEG--DVNTVKFF  147 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~--~i~~~~~~  147 (267)
                      .+..-...-...    ....-.++...  ++++++.|+.+       ..+.+||+...  ....+.....  .-.++.. 
T Consensus       132 ~~~~W~~~~~~p----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~-  202 (302)
T 2xn4_A          132 KSNEWFHVAPMN----TRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGV-  202 (302)
T ss_dssp             TTTEEEEECCCS----SCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEE-
T ss_pred             CCCeEeecCCCC----CcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEE-
Confidence            876543322111    11111222222  45677777643       34778887632  2222211111  1122222 


Q ss_pred             cCCCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC-----eEEEEeCCcc
Q 024451          148 PDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLA  217 (267)
Q Consensus       148 ~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-----~i~i~d~~~~  217 (267)
                      -+++.++.|+.+     ..+.+||+.+.+-...  ...... ......+  ..++.+++.|+.++     .+.+||..+.
T Consensus       203 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~~~~-r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          203 LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV--ADMNMC-RRNAGVC--AVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEE--CCCSSC-CBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             ECCEEEEECCCCCCcccceEEEEeCCCCCEeeC--CCCCCc-cccCeEE--EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            256777777764     3688999987643221  111111 1111222  23666777776543     5888887654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.84  E-value=1.2  Score=35.69  Aligned_cols=109  Identities=15%  Similarity=0.147  Sum_probs=62.4

Q ss_pred             cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEe-ecCCCCCCcEEEEEEccC---CCEEEEEE---eCCeEEE
Q 024451          139 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ-QHGENEIPHVTSIAFSIS---GRLLFAGY---SNGDCYV  211 (267)
Q Consensus       139 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~---~~~l~~g~---~dg~i~i  211 (267)
                      ..-..++|.|+|.++++--..|.|++++...++....... ............++++|+   +..|....   .++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            3457899999999887766589999998765543221110 011112345789999995   45555443   2345555


Q ss_pred             EeCCc----------cceee-ecccccCCccceEEEEEECCCCCeEEEeE
Q 024451          212 WDTLL----------AKVVL-NLGSLQNSHEGRITCLGLSADGSALCTGS  250 (267)
Q Consensus       212 ~d~~~----------~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~sgs  250 (267)
                      |....          .+.+. .+.. ...|..  ..|+|.|||.+.++.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g--~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNG--GRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECC-CSSCCC--CCEEECTTSCEEEECB
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCC-CCCccC--ccccCCCCCCEEEEEC
Confidence            55432          11111 1111 123543  5689999998777643

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.73  E-value=2  Score=37.58  Aligned_cols=219  Identities=7%  Similarity=-0.067  Sum_probs=125.9

Q ss_pred             CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccc
Q 024451           17 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD   96 (267)
Q Consensus        17 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~   96 (267)
                      ....|+..++.....     .....+.+ -.....++|.+.++..+.+-..++.|+.++++.......+..     ....
T Consensus        13 ~~~~I~~i~l~~~~~-----~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-----g~~~   81 (628)
T 4a0p_A           13 RRADIRRISLETNNN-----NVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-----GLDY   81 (628)
T ss_dssp             ETTEEEEEESSCTTC-----EEECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-----SCSC
T ss_pred             eCCcEEEEECCCCCc-----ceEEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-----CCCC
Confidence            345788888864221     01111112 234678999987766666666788999998875433333321     1123


Q ss_pred             eEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE-EEe-eCCCcEEEEeCCCCeeeE
Q 024451           97 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTG-SDDGTCRLFDIRTGHQLQ  174 (267)
Q Consensus        97 i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~-~~d~~i~iwd~~~~~~~~  174 (267)
                      ...++++..+++++.+-...+.|.+.++.. ..........-.....++++|....| .+- +....|...+++... ..
T Consensus        82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG-~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~  159 (628)
T 4a0p_A           82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDG-QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RT  159 (628)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTS-TTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CE
T ss_pred             cceEEEEeCCCEEEEEECCCCEEEEEecCC-CcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eE
Confidence            556777766778888888888999998753 22112222233456899999854444 443 235678878876443 33


Q ss_pred             EEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451          175 VYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT  253 (267)
Q Consensus       175 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg  253 (267)
                      .+..     .......+++++++..|..+. ..+.|..+|+...... .+.   ... ..-..+++.. +.+..+-...+
T Consensus       160 ~l~~-----~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~-v~~---~~l-~~P~glav~~-~~ly~tD~~~~  228 (628)
T 4a0p_A          160 TLVP-----NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE-VIA---DDL-PHPFGLTQYQ-DYIYWTDWSRR  228 (628)
T ss_dssp             EEEC-----SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE---ECC-SCEEEEEEET-TEEEEEETTTT
T ss_pred             EEEC-----CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE-Eee---ccC-CCceEEEEEC-CEEEEecCCCC
Confidence            3322     223578999999877776665 4578888887543221 111   111 1224566654 34444433456


Q ss_pred             cEEEEe
Q 024451          254 NLKIWA  259 (267)
Q Consensus       254 ~i~~w~  259 (267)
                      .|...+
T Consensus       229 ~I~~~d  234 (628)
T 4a0p_A          229 SIERAN  234 (628)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666665

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.55  E-value=1.2  Score=34.46  Aligned_cols=183  Identities=13%  Similarity=0.128  Sum_probs=88.1

Q ss_pred             CeeEEEeeCC-----CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-----eEEEEeCCCcc
Q 024451           59 DTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTRVAS  128 (267)
Q Consensus        59 ~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-----~i~iwd~~~~~  128 (267)
                      +..++.|+.+     ..+.+||..+..-...-...    ....-.++...  ++++++.|+.++     .+.+||+... 
T Consensus        62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~-  134 (302)
T 2xn4_A           62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR----DRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN-  134 (302)
T ss_dssp             TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCS----SCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT-
T ss_pred             CEEEEEeCcCCCccccceEEECCCCCceeeCCCCC----ccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC-
Confidence            3566666654     35888998876533322111    11111222222  457777777553     4667776532 


Q ss_pred             cceEEeecccc--ceeEEEEecCCCEEEEeeCC-------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451          129 RAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDD-------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL  199 (267)
Q Consensus       129 ~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  199 (267)
                       ....+.....  .-.++.. -+++.++.|+.+       ..+.+||+.+.+-...  ..... .......+.  .++.+
T Consensus       135 -~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~--~~~p~-~r~~~~~~~--~~~~i  207 (302)
T 2xn4_A          135 -EWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI--AEMST-RRSGAGVGV--LNNLL  207 (302)
T ss_dssp             -EEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEE--CCCSS-CCBSCEEEE--ETTEE
T ss_pred             -eEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC--CCCcc-ccccccEEE--ECCEE
Confidence             2222211111  1122222 256677777643       3588899887643221  11111 111112222  25677


Q ss_pred             EEEEEeC-----CeEEEEeCCccc--eeeecccccCCccceEEEEEECCCCCeEEEeECCC-----cEEEEecC
Q 024451          200 LFAGYSN-----GDCYVWDTLLAK--VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKIWAFG  261 (267)
Q Consensus       200 l~~g~~d-----g~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg-----~i~~w~~~  261 (267)
                      ++.|+.+     ..+.+||..+.+  .+..+......|    ..+.  .++++++.|+.++     .+.+|++.
T Consensus       208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~----~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~  275 (302)
T 2xn4_A          208 YAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA----GVCA--VNGLLYVVGGDDGSCNLASVEYYNPT  275 (302)
T ss_dssp             EEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC----EEEE--ETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             EEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC----eEEE--ECCEEEEECCcCCCcccccEEEEcCC
Confidence            7777654     368899976543  222111111111    1122  2677888887664     36677653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.34  E-value=3.9  Score=39.34  Aligned_cols=197  Identities=12%  Similarity=0.264  Sum_probs=101.5

Q ss_pred             eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe--eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC-ee
Q 024451            5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK--GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LR   81 (267)
Q Consensus         5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~   81 (267)
                      .+|..+.|+.-. ..++.|+|++...          .++.|.  ..|..=.|.....  |+-. .+..|.-|++... .+
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~----------klks~~~~e~VvfWkWis~~~--l~lV-T~~aVyHW~~~~~s~P  138 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKS----------KMKAHTMTDDVTFWKWISLNT--VALV-TDNAVYHWSMEGESQP  138 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhh----------hhcccccCCCceEEEecCCCe--eEEE-cCCeEEEeccCCCCcc
Confidence            466666666654 5677777775421          112221  2344445654332  3322 2347888998532 22


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEE-Ee------cCCCeEEEEeCCCcccceEEeeccccceeEEEEe--cC-CC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFV-SG------SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF--PD-GN  151 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-s~------~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~--~~-~~  151 (267)
                      ..+|...... ....|..-..++. .+.++ +|      ...|.+.+|+++  ++....+.||.+....+...  +. .+
T Consensus       139 ~k~fdR~~~L-~~~QIinY~~d~~-~kW~~l~gi~~~~~~v~G~mQLyS~e--r~~sQ~iegha~~F~~~~~~~~~~~~~  214 (1630)
T 1xi4_A          139 VKMFDRHSSL-AGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEEST  214 (1630)
T ss_pred             HHHHhcchhc-ccCeeEEeeeCCC-CCeEEEEeeccCCCcccceeeeeecc--cccchhhhHhHhhhheeccCCCCCCce
Confidence            2232211000 1234555555543 23332 22      346888999875  33455567776655444432  11 22


Q ss_pred             EEEEeeC---CCcEEEEeCCCC---e------eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce
Q 024451          152 RFGTGSD---DGTCRLFDIRTG---H------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV  219 (267)
Q Consensus       152 ~l~~~~~---d~~i~iwd~~~~---~------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~  219 (267)
                      .|.-+..   .++++|-++...   .      ....++....  ......++..++....+..-+.-|.+++||+.++..
T Consensus       215 l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~--~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA--QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC  292 (1630)
T ss_pred             EEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCccc--ccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence            3332222   268888887542   1      1111111110  112345666778888888888999999999998876


Q ss_pred             ee
Q 024451          220 VL  221 (267)
Q Consensus       220 ~~  221 (267)
                      +.
T Consensus       293 i~  294 (1630)
T 1xi4_A          293 IY  294 (1630)
T ss_pred             hh
Confidence            54

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.18  E-value=1.5  Score=34.00  Aligned_cols=188  Identities=12%  Similarity=0.101  Sum_probs=91.1

Q ss_pred             CCCCeEEEccCC----CeEEEeecCCCCCC-CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC------CeEEEEe
Q 024451            7 PTGQSVACGGLD----SVCSIFNLNSPTDK-DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVLWD   75 (267)
Q Consensus         7 ~~g~~l~~~~~d----~~v~~w~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~v~iwd   75 (267)
                      .++.+++.||.+    ..+.+||.....=. ...+|..  ..+|.    ++.+   ++.+++.|+.+      ..+.+||
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~----~~~~---~~~iyv~GG~~~~~~~~~~~~~~d  124 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP--RDSLA----ACAA---EGKIYTSGGSEVGNSALYLFECYD  124 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC--CBSCE----EEEE---TTEEEEECCBBTTBSCCCCEEEEE
T ss_pred             ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc--cccee----EEEE---CCEEEEECCCCCCCcEeeeEEEEe
Confidence            366778888865    56777876542100 0001111  11222    2222   33566666654      4588899


Q ss_pred             CCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC---------CCeEEEEeCCCcccceEEeecccc-c-eeEE
Q 024451           76 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---------DSTARLWDTRVASRAVRTFHGHEG-D-VNTV  144 (267)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~-~-i~~~  144 (267)
                      ..+..-...-.  .....  .-.+....  ++++++.|+.         -..+.+||+...  ....+..... . -.++
T Consensus       125 ~~~~~W~~~~~--~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~  196 (306)
T 3ii7_A          125 TRTESWHTKPS--MLTQR--CSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGL  196 (306)
T ss_dssp             TTTTEEEEECC--CSSCC--BSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEE
T ss_pred             CCCCceEeCCC--CcCCc--ceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceE
Confidence            98775433211  11111  11122222  4567777764         244778887643  2232321111 1 1222


Q ss_pred             EEecCCCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-----CeEEEEeC
Q 024451          145 KFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDT  214 (267)
Q Consensus       145 ~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-----g~i~i~d~  214 (267)
                      ... +++.++.|+.+     ..+.+||+.+.+-...  .. ..........+.+  ++.+++.|+.+     ..+.+||.
T Consensus       197 ~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~--~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~  270 (306)
T 3ii7_A          197 VFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV--SP-MPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT  270 (306)
T ss_dssp             EEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEEC--CC-CSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred             EEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC--CC-CCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence            222 56677777654     3588899887542211  11 1111111222222  66777777643     47888987


Q ss_pred             Ccc
Q 024451          215 LLA  217 (267)
Q Consensus       215 ~~~  217 (267)
                      .+.
T Consensus       271 ~~~  273 (306)
T 3ii7_A          271 ETD  273 (306)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.67  E-value=1.9  Score=33.40  Aligned_cols=226  Identities=13%  Similarity=0.160  Sum_probs=105.4

Q ss_pred             CCeEEEccCC--CeEEEeecCCCCC-CCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC----CeEEEEeCCCCee
Q 024451            9 GQSVACGGLD--SVCSIFNLNSPTD-KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDITTGLR   81 (267)
Q Consensus         9 g~~l~~~~~d--~~v~~w~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~~   81 (267)
                      +.+++.||.+  ..+.+||.....= .-..+|..  -.+|.    ++.+   ++.+++.|+.+    ..+.+||..+..-
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~----~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W   82 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK--RRDAA----CVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSW   82 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCC--CBSCE----EEEE---TTEEEEECCBSSSBCCEEEEEETTTTEE
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcc--cceeE----EEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeE
Confidence            4566667653  5677787654210 00111111  11222    2222   33566667654    6688899987754


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC------CeEEEEeCCCcccceEEeeccc-cc-eeEEEEecCCCEE
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGHE-GD-VNTVKFFPDGNRF  153 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d------~~i~iwd~~~~~~~~~~~~~~~-~~-i~~~~~~~~~~~l  153 (267)
                      ...-...  ..  ..-.+....  ++++++.|+.+      ..+.+||.....  ...+.... .. -.++.. -+++.+
T Consensus        83 ~~~~~~p--~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iy  153 (306)
T 3ii7_A           83 YSKLGPP--TP--RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES--WHTKPSMLTQRCSHGMVE-ANGLIY  153 (306)
T ss_dssp             EEEECCS--SC--CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE--EEEECCCSSCCBSCEEEE-ETTEEE
T ss_pred             EECCCCC--cc--ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc--eEeCCCCcCCcceeEEEE-ECCEEE
Confidence            3332111  11  111122222  45778888765      457788876422  22221111 11 122222 256666


Q ss_pred             EEeeC---------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-----CeEEEEeCCccce
Q 024451          154 GTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAKV  219 (267)
Q Consensus       154 ~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-----g~i~i~d~~~~~~  219 (267)
                      +.|+.         -..+.+||+.+.+-...  ..... ....-..+.  -++.+++.|+.+     ..+.+||..+.+=
T Consensus       154 v~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~--~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  228 (306)
T 3ii7_A          154 VCGGSLGNNVSGRVLNSCEVYDPATETWTEL--CPMIE-ARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEW  228 (306)
T ss_dssp             EECCEESCTTTCEECCCEEEEETTTTEEEEE--CCCSS-CCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred             EECCCCCCCCcccccceEEEeCCCCCeEEEC--CCccc-hhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence            77663         34588999887643221  11111 111112222  256677776543     4688899765431


Q ss_pred             eeecccccCCccceEEEEEECCCCCeEEEeECC-----CcEEEEecC
Q 024451          220 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKIWAFG  261 (267)
Q Consensus       220 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-----g~i~~w~~~  261 (267)
                      . ....++.... ...++.+  ++++++.|+.+     ..+.+|+..
T Consensus       229 ~-~~~~~p~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~  271 (306)
T 3ii7_A          229 K-MVSPMPWKGV-TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE  271 (306)
T ss_dssp             E-ECCCCSCCBS-CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred             E-ECCCCCCCcc-ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence            1 1111111111 1122222  67788888865     346666653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.44  E-value=3.6  Score=35.85  Aligned_cols=181  Identities=6%  Similarity=-0.026  Sum_probs=103.1

Q ss_pred             CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-EEEeCCccccCCccc
Q 024451           18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTAD   96 (267)
Q Consensus        18 d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~   96 (267)
                      ...|++-++.....     ...... ..-.....++|.+.++..+.+=...+.|..++++.... ..++..     ....
T Consensus        17 ~~~I~~i~~~~~~~-----~~~~~~-~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-----~~~~   85 (619)
T 3s94_A           17 RRDLRLVDATNGKE-----NATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-----GLLS   85 (619)
T ss_dssp             SSBEEEECCC--------------C-BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS-----SCSC
T ss_pred             cccEEEEeCCCCcc-----eEEEEE-cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-----CCCC
Confidence            35688887764210     011111 12234568899987665555555567888888865421 222211     1234


Q ss_pred             eEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCEE-EEe-eCCCcEEEEeCCCCeee
Q 024451           97 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRF-GTG-SDDGTCRLFDIRTGHQL  173 (267)
Q Consensus        97 i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l-~~~-~~d~~i~iwd~~~~~~~  173 (267)
                      ...++++..+++++.+-...+.|.+.++.. . ..+.+. ........++++|.+..| .+- +....|...+++... .
T Consensus        86 P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG-~-~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-~  162 (619)
T 3s94_A           86 PDGLACDWLGEKLYWTDSETNRIEVSNLDG-S-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-R  162 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTS-C-SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-C
T ss_pred             cCeEEEEecCCEEEEEeCCCCEEEEEECCC-C-CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-e
Confidence            677888876778888888889999999763 2 222222 233446789999975544 443 234567777765432 2


Q ss_pred             EEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCc
Q 024451          174 QVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLL  216 (267)
Q Consensus       174 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~  216 (267)
                      ..+...    .......+++++++..|..+. ..+.|..+|...
T Consensus       163 ~~l~~~----~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          163 FIIINS----EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  202 (619)
T ss_dssp             EEEECS----SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred             EEEEeC----CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence            222221    223578999998776666554 456888888654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.41  E-value=2.1  Score=33.05  Aligned_cols=192  Identities=13%  Similarity=0.172  Sum_probs=90.5

Q ss_pred             CCCCeEEEccCC-----CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC-----CeEEEEeC
Q 024451            7 PTGQSVACGGLD-----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDI   76 (267)
Q Consensus         7 ~~g~~l~~~~~d-----~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~v~iwd~   76 (267)
                      .++.+++.||.+     ..+.+||......  ........+......-.++..   ++..++.|+.+     ..+.+||.
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~--~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~  135 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADED--GVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDP  135 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTT--CCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEET
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCC--CeeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcC
Confidence            357778888865     4577888654320  001111111111111112222   23456666543     35888998


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-----CeEEEEeCCCcccceEEeeccc-cc-eeEEEEecC
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVASRAVRTFHGHE-GD-VNTVKFFPD  149 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~-~~-i~~~~~~~~  149 (267)
                      .+..-...-...  ..  ..-.+....  ++++++.|+.+     ..+.+||+...  ....+.... .. -.++.. -+
T Consensus       136 ~~~~W~~~~~~p--~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~-~~  206 (301)
T 2vpj_A          136 NIDQWSMLGDMQ--TA--REGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVAL-LN  206 (301)
T ss_dssp             TTTEEEEEEECS--SC--CBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEE-ET
T ss_pred             CCCeEEECCCCC--CC--cccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEE-EC
Confidence            876533321111  11  111122222  45778887754     35778887532  222221111 11 112222 25


Q ss_pred             CCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-----CeEEEEeCCcc
Q 024451          150 GNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLA  217 (267)
Q Consensus       150 ~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-----g~i~i~d~~~~  217 (267)
                      ++.++.|+.+     ..+.+||+++.+-...  ... .........+.  .++.+++.|+.+     ..+.+||..+.
T Consensus       207 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~--~~~-p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          207 DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV--TSM-TTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             TEEEEECCBCSSSBCCCEEEEETTTTEEEEE--CCC-SSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CEEEEEeCCCCCcccceEEEEeCCCCcEEEC--CCC-CCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            6777777764     4689999987653221  111 11111112222  256677777654     35777887543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.75  E-value=2.8  Score=32.61  Aligned_cols=145  Identities=12%  Similarity=0.107  Sum_probs=69.8

Q ss_pred             CeeEEEeeCC-----CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-----CeEEEEeCCCcc
Q 024451           59 DTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVAS  128 (267)
Q Consensus        59 ~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-----~~i~iwd~~~~~  128 (267)
                      +.+++.|+.+     ..+.+||..+..-...-.  ....  ..-.+....  ++++++.|+.+     ..+.+||+... 
T Consensus       122 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-  194 (308)
T 1zgk_A          122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP--MLTR--RIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN-  194 (308)
T ss_dssp             TEEEEECCEETTEECCCEEEEETTTTEEEECCC--CSSC--CBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT-
T ss_pred             CEEEEEcCCCCCcccccEEEECCCCCeEeECCC--CCcc--ccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC-
Confidence            3455566543     357889988764333211  1111  111122222  45778887754     35778887532 


Q ss_pred             cceEEeeccc-c-ceeEEEEecCCCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451          129 RAVRTFHGHE-G-DVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF  201 (267)
Q Consensus       129 ~~~~~~~~~~-~-~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  201 (267)
                       ....+.... . .-.++... +++.++.|+.+     ..+.+||+.+.+-...  .. ..........+.  .++.+++
T Consensus       195 -~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~--~~-~p~~r~~~~~~~--~~~~i~v  267 (308)
T 1zgk_A          195 -EWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFV--AP-MKHRRSALGITV--HQGRIYV  267 (308)
T ss_dssp             -EEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC--CC-CSSCCBSCEEEE--ETTEEEE
T ss_pred             -eEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC--CC-CCCCccceEEEE--ECCEEEE
Confidence             222221111 1 11222222 56777777764     4688999887643211  11 111111112222  2566777


Q ss_pred             EEEeC-----CeEEEEeCCcc
Q 024451          202 AGYSN-----GDCYVWDTLLA  217 (267)
Q Consensus       202 ~g~~d-----g~i~i~d~~~~  217 (267)
                      .|+.+     ..+.+||..+.
T Consensus       268 ~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          268 LGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             ECCBCSSCBCCEEEEEETTTT
T ss_pred             EcCcCCCcccceEEEEcCCCC
Confidence            76643     35777876543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.56  E-value=3.7  Score=35.31  Aligned_cols=76  Identities=16%  Similarity=0.145  Sum_probs=51.8

Q ss_pred             cceeEEEEecCCCEEEEee-CCCcEEEEeCCCCee-----e----EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCe
Q 024451          139 GDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQ-----L----QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD  208 (267)
Q Consensus       139 ~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-----~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~  208 (267)
                      ..-+.+.++|+|++++.++ -+.++.++|++.-..     +    .....+ .+. .......+|+++|....+-.-|.+
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae-~e~-GlGPlHt~Fd~~G~aYTtlfidSq  400 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE-PEL-GLGPLHTTFDGRGNAYTTLFIDSQ  400 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC-CBC-CSCEEEEEECSSSEEEEEETTTTE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee-ccC-CCcccEEEECCCCceEeeeeecce
Confidence            3457899999999988776 578999999874211     0    001111 111 224678899999966666678999


Q ss_pred             EEEEeCCc
Q 024451          209 CYVWDTLL  216 (267)
Q Consensus       209 i~i~d~~~  216 (267)
                      |.-|++..
T Consensus       401 vvkWni~~  408 (638)
T 3sbq_A          401 VVKWNMEE  408 (638)
T ss_dssp             EEEEEHHH
T ss_pred             EEEEeccH
Confidence            99999754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.37  E-value=3.1  Score=32.30  Aligned_cols=228  Identities=11%  Similarity=0.115  Sum_probs=104.9

Q ss_pred             CCCCCeEEEccCC----CeEEEeecCCCCCC-CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC----C-----CeE
Q 024451            6 SPTGQSVACGGLD----SVCSIFNLNSPTDK-DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG----D-----QTC   71 (267)
Q Consensus         6 ~~~g~~l~~~~~d----~~v~~w~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----d-----~~v   71 (267)
                      .-++.+++.||.+    ..+.+||.....=. ...+|..+  .+|.    .+. .  ++.+++.|+.    +     ..+
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~----~~~-~--~~~lyv~GG~~~~~~~~~~~~~~   92 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPR--SGLA----GCV-V--GGLLYAVGGRNNSPDGNTDSSAL   92 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCC--BSCE----EEE-E--TTEEEEECCEEEETTEEEECCCE
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccc--ccce----EEE-E--CCEEEEECCCcCCCCCCeecceE
Confidence            3466778888742    35677776542100 01112111  1232    122 2  2345566655    2     457


Q ss_pred             EEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-----CeEEEEeCCCcccceEEeeccc-cc-eeEE
Q 024451           72 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVASRAVRTFHGHE-GD-VNTV  144 (267)
Q Consensus        72 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~-~~-i~~~  144 (267)
                      .+||..+..-...-.  ..... .. .++...  ++++++.|+.+     ..+.+||.....  ...+.... .. -.++
T Consensus        93 ~~~d~~~~~W~~~~~--~p~~r-~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~  164 (308)
T 1zgk_A           93 DCYNPMTNQWSPCAP--MSVPR-NR-IGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGV  164 (308)
T ss_dssp             EEEETTTTEEEECCC--CSSCC-BT-CEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEE
T ss_pred             EEECCCCCeEeECCC--CCcCc-cc-cEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEE
Confidence            888988764333211  11111 11 122222  45777777644     357778875322  22221111 11 1222


Q ss_pred             EEecCCCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-----CeEEEEeC
Q 024451          145 KFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDT  214 (267)
Q Consensus       145 ~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-----g~i~i~d~  214 (267)
                      ... +++.++.|+.+     ..+.+||+.+.+-...  ... .........+.+  ++.+++.|+.+     ..+.+||.
T Consensus       165 ~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~  238 (308)
T 1zgk_A          165 AVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI--TAM-NTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDV  238 (308)
T ss_dssp             EEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC--CCC-SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred             EEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC--CCC-CCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeC
Confidence            222 56777777754     4588899877543211  111 111111122222  66677777654     56899997


Q ss_pred             CccceeeecccccCCccceEEEEEECCCCCeEEEeECCC-----cEEEEec
Q 024451          215 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKIWAF  260 (267)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg-----~i~~w~~  260 (267)
                      .+.+=.. ...++..... ..++.  -++++++.|+.++     .+.+|++
T Consensus       239 ~~~~W~~-~~~~p~~r~~-~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~  285 (308)
T 1zgk_A          239 ETETWTF-VAPMKHRRSA-LGITV--HQGRIYVLGGYDGHTFLDSVECYDP  285 (308)
T ss_dssp             TTTEEEE-CCCCSSCCBS-CEEEE--ETTEEEEECCBCSSCBCCEEEEEET
T ss_pred             CCCcEEE-CCCCCCCccc-eEEEE--ECCEEEEEcCcCCCcccceEEEEcC
Confidence            6543211 1111111111 11122  2577888887653     3555654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=92.11  E-value=3.6  Score=32.44  Aligned_cols=194  Identities=10%  Similarity=0.053  Sum_probs=95.2

Q ss_pred             eeEEEEEEecCCCeeEEEeeCCCeE-EEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC
Q 024451           47 GYVSCCQYVPDEDTHLITSSGDQTC-VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  125 (267)
Q Consensus        47 ~~v~~~~~~~~~~~~l~s~~~d~~v-~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~  125 (267)
                      +.++.+.+.+++ ..++ ++.++.| +-.|--..-.. ..     .+....+..+.+.++ +++++.+...+..+-+|-.
T Consensus       122 ~~~~~i~~~~~~-~~~~-~~~~g~v~~S~DgG~tW~~-~~-----~~~~~~~~~~~~~~~-~~~~~~g~~G~~~~S~d~g  192 (327)
T 2xbg_A          122 GSPRLIKALGNG-SAEM-ITNVGAIYRTKDSGKNWQA-LV-----QEAIGVMRNLNRSPS-GEYVAVSSRGSFYSTWEPG  192 (327)
T ss_dssp             SCEEEEEEEETT-EEEE-EETTCCEEEESSTTSSEEE-EE-----CSCCCCEEEEEECTT-SCEEEEETTSSEEEEECTT
T ss_pred             CCeEEEEEECCC-CEEE-EeCCccEEEEcCCCCCCEE-ee-----cCCCcceEEEEEcCC-CcEEEEECCCcEEEEeCCC
Confidence            345667766543 4444 4455544 33332111111 11     123446778888764 5566555444444444421


Q ss_pred             CcccceEEe-eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCC--CCCCcEEEEEEccCCCEEEE
Q 024451          126 VASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISGRLLFA  202 (267)
Q Consensus       126 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~  202 (267)
                        ......+ ......+..+.+.+++..+ ..+.+|.+.+.+.+.++.   +......  .....+.++.+.+++..+++
T Consensus       193 --G~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t---W~~~~~~~~~~~~~~~~v~~~~~~~~~~~  266 (327)
T 2xbg_A          193 --QTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN---WGELLSPLRRNSVGFLDLAYRTPNEVWLA  266 (327)
T ss_dssp             --CSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE---ECCCBCTTSSCCSCEEEEEESSSSCEEEE
T ss_pred             --CCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe---eEeccCCcccCCcceEEEEecCCCEEEEE
Confidence              1112222 2334567888888887755 455678777664322221   1111101  11124788899988877776


Q ss_pred             EEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          203 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       203 g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      |. +|.++ +....++.-...... ......+..+.|.+++++++ ++.+|.|.-++
T Consensus       267 g~-~g~i~-~S~DgG~tW~~~~~~-~~~~~~~~~v~~~~~~~~~~-~G~~G~i~~~~  319 (327)
T 2xbg_A          267 GG-AGALL-CSQDGGQTWQQDVDV-KKVPSNFYKILFFSPDQGFI-LGQKGILLRYV  319 (327)
T ss_dssp             ES-TTCEE-EESSTTSSCEECGGG-TTSSSCCCEEEEEETTEEEE-ECSTTEEEEEC
T ss_pred             eC-CCeEE-EeCCCCcccEEcCcc-CCCCCCeEEEEEECCCceEE-EcCCceEEEEc
Confidence            64 66663 322222211111100 11224567787876555544 56788766553

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.70  E-value=4.3  Score=32.51  Aligned_cols=239  Identities=13%  Similarity=0.100  Sum_probs=112.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccc----ccccCCeeeEEEEEEecC---CCeeEEE--eeCCCeEE
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS----RMLSGHKGYVSCCQYVPD---EDTHLIT--SSGDQTCV   72 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~---~~~~l~s--~~~d~~v~   72 (267)
                      .++|.|+|+++++--..|.|++++....     .....    ............++++|+   +..+.++  ...++.|.
T Consensus        36 ~ia~~pdG~llVter~~G~I~~v~~~~g-----~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           36 GLAPLPGGDLLVSSRDEATITRVDAKTG-----RKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTC-----CEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             EEEEcCCCcEEEEEecCCEEEEEECCCC-----cEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            4689999998888776888888864321     11111    112233456778999884   3333332  22445566


Q ss_pred             EEeCCCC--------eeEEEeCC-ccccCCccceEEEEEeCCCCeEEEEecC-------------CCeEEEEeCCCcc--
Q 024451           73 LWDITTG--------LRTSVFGG-EFQSGHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTRVAS--  128 (267)
Q Consensus        73 iwd~~~~--------~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~s~~~-------------d~~i~iwd~~~~~--  128 (267)
                      -|.....        ....++.. .....|.  ...+.|.+ ++.++++.+.             .|.|.=.+.....  
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~  187 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP  187 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence            6655431        11111110 0112232  34567775 4567776542             2333222332110  


Q ss_pred             -----cceEEeeccccceeEEEEecCCCEEEEe-eCCCcEEEEeCCCCeeeE--EEEee-cCCC----------CCCcEE
Q 024451          129 -----RAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQ--VYYQQ-HGEN----------EIPHVT  189 (267)
Q Consensus       129 -----~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~--~~~~~-~~~~----------~~~~v~  189 (267)
                           .....-.+|.. ...++|+|++.++++- +.|+.=.|--+..+...-  ..... ....          ......
T Consensus       188 ~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~  266 (347)
T 3das_A          188 GNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPS  266 (347)
T ss_dssp             TCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEE
T ss_pred             CCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCc
Confidence                 00011124432 4678999987766553 344322332222221100  00000 0000          001234


Q ss_pred             EEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeE
Q 024451          190 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  250 (267)
Q Consensus       190 ~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs  250 (267)
                      .++|. ++..+.+....+.|....+...+.......+.....+++..++..|||.++++-+
T Consensus       267 G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          267 GIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             ceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            55665 4556666666666666665433221111111122346789999999998777644

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.86  E-value=4.7  Score=31.37  Aligned_cols=104  Identities=8%  Similarity=0.075  Sum_probs=52.6

Q ss_pred             CeeEEEeeCC--------CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC-C-----CeEEEEeC
Q 024451           59 DTHLITSSGD--------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-D-----STARLWDT  124 (267)
Q Consensus        59 ~~~l~s~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-d-----~~i~iwd~  124 (267)
                      +..++.|+.+        ..+.+||..+..-...-.  ....  ..-.+....  ++++++.|+. +     ..+.+||.
T Consensus        99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~  172 (315)
T 4asc_A           99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--LPYV--VYGHTVLSH--MDLVYVIGGKGSDRKCLNKMCVYDP  172 (315)
T ss_dssp             TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--CSSC--CBSCEEEEE--TTEEEEECCBCTTSCBCCCEEEEET
T ss_pred             CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--CCCc--ccceeEEEE--CCEEEEEeCCCCCCcccceEEEEeC
Confidence            3455666632        458889998764332211  1111  111122222  4567788776 2     35778887


Q ss_pred             CCcccceEEeeccc-cc-eeEEEEecCCCEEEEeeCCC-----cEEEEeCCCCe
Q 024451          125 RVASRAVRTFHGHE-GD-VNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGH  171 (267)
Q Consensus       125 ~~~~~~~~~~~~~~-~~-i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~  171 (267)
                      ...  ....+.... .. -.++.. -+++.++.|+.++     .+.+||+.+.+
T Consensus       173 ~~~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          173 KKF--EWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTT--EEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCC--eEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence            632  222222111 11 122222 2567777777654     58889987764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=90.83  E-value=4  Score=30.50  Aligned_cols=184  Identities=13%  Similarity=0.066  Sum_probs=90.3

Q ss_pred             CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCC--eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee---
Q 024451            7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH--KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR---   81 (267)
Q Consensus         7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~---   81 (267)
                      |...+|.....| +  +|--..|...........+..++  =..+..++|+|++.  |... .++.+.--+..+...   
T Consensus         2 ~~~~~l~~v~~d-~--~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~--LYaV-~~G~Ly~~~~~t~~~~~W   75 (236)
T 1tl2_A            2 GGESMLRGVYQD-K--FYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE--LYGV-LNDKIYKGTPPTHDNDNW   75 (236)
T ss_dssp             CCCCCEEEEETT-E--EEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC--EEEE-ETTEEEEESCCCSTTCCH
T ss_pred             CcceEEEEEeCC-c--EEecCCCCCcccchhhhccccCccccccceeEEECCCcc--EEEE-eCCeEEEECCCCCCcccc
Confidence            455778888887 4  66655554433222111111122  13567899999653  4444 667665444433110   


Q ss_pred             ---EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-----eEEe-eccccceeEEEEecCCCE
Q 024451           82 ---TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-----VRTF-HGHEGDVNTVKFFPDGNR  152 (267)
Q Consensus        82 ---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-----~~~~-~~~~~~i~~~~~~~~~~~  152 (267)
                         ...+..   .+-.. ...+.+.+ ++.+.++  .||.|.-++.......     ...+ ..-=..+..+.|.|+|.+
T Consensus        76 ~~s~t~IG~---~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~L  148 (236)
T 1tl2_A           76 MGRAKKIGN---GGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYL  148 (236)
T ss_dssp             HHHCEEEEC---SCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCE
T ss_pred             cccccEecc---ccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceE
Confidence               001100   01111 34566664 5666665  6699887775322110     0111 111145789999999987


Q ss_pred             EEEeeCCCcEEEEeCCCCe-e----eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEE
Q 024451          153 FGTGSDDGTCRLFDIRTGH-Q----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY  210 (267)
Q Consensus       153 l~~~~~d~~i~iwd~~~~~-~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~  210 (267)
                      .+..  |+.+.-...-++. .    ........   .-..-..+.|++++.+.++.  +|.++
T Consensus       149 yav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~---g~~~yr~l~f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          149 YAVH--GQQFYKALPPVSNQDNWLARATKIGQG---GWDTFKFLFFSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             EEEE--TTEEEEECCCSSTTCCHHHHCEEEESS---SGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             EEEe--CCcEEecCCCCCCCcccccccceeccC---CcceEEEEEECCCCcEEEEe--CCeEE
Confidence            7766  6765322211110 0    00011100   00123446688888877776  77543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.21  E-value=9.4  Score=33.77  Aligned_cols=157  Identities=8%  Similarity=0.045  Sum_probs=76.5

Q ss_pred             eeEEEeeCC----CeEEEEeCCCCeeEEEe-CCc-cccCCccceEEEEEeCCCCeEEEEecCCC------eEEEEeCCCc
Q 024451           60 THLITSSGD----QTCVLWDITTGLRTSVF-GGE-FQSGHTADVLSVSISGSNSRMFVSGSCDS------TARLWDTRVA  127 (267)
Q Consensus        60 ~~l~s~~~d----~~v~iwd~~~~~~~~~~-~~~-~~~~~~~~i~~~~~~~~~~~~~~s~~~d~------~i~iwd~~~~  127 (267)
                      ..++.|+.+    ..+.+||..+..-...- ... ........-.++.....++++++.||.++      .+.+||....
T Consensus       399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~  478 (695)
T 2zwa_A          399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR  478 (695)
T ss_dssp             CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred             EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence            456666643    45788888776433322 100 00001111123333321457788877543      4677777532


Q ss_pred             ccceEEeeccc-c-ceeEEEEecCCCEEEEeeCCC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC-CCEEEE
Q 024451          128 SRAVRTFHGHE-G-DVNTVKFFPDGNRFGTGSDDG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFA  202 (267)
Q Consensus       128 ~~~~~~~~~~~-~-~i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~  202 (267)
                        ....+.... . .-+++....+++.++.||.++  .+.+||+.+.+-...-.............++.+..+ +.+++.
T Consensus       479 --~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~  556 (695)
T 2zwa_A          479 --EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL  556 (695)
T ss_dssp             --EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred             --cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence              222221111 1 112333334788888888654  689999987643211100000001111233455555 666677


Q ss_pred             EEe--C-----CeEEEEeCCccc
Q 024451          203 GYS--N-----GDCYVWDTLLAK  218 (267)
Q Consensus       203 g~~--d-----g~i~i~d~~~~~  218 (267)
                      |+.  +     ..+..||..+.+
T Consensus       557 GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          557 GGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCcCCCCCeeeCcEEEEEccCCc
Confidence            765  2     468899976654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=89.89  E-value=15  Score=35.61  Aligned_cols=218  Identities=14%  Similarity=0.184  Sum_probs=110.6

Q ss_pred             cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCcc
Q 024451           16 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA   95 (267)
Q Consensus        16 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~   95 (267)
                      +...+|.|-|+..+.+.     ..+.+.+ .+.    --+|.. . +++--...++.|+|+++..+...+.      -..
T Consensus        45 ~~~~~vvIidl~~~~~~-----~rrpi~A-dsA----IMnP~~-~-iiALrag~~lQiFnl~~k~klks~~------~~e  106 (1630)
T 1xi4_A           45 GEQAQVVIIDMNDPSNP-----IRRPISA-DSA----IMNPAS-K-VIALKAGKTLQIFNIEMKSKMKAHT------MTD  106 (1630)
T ss_pred             CCCceEEEEECCCCCCc-----ccccccc-hhh----ccCCCc-c-eEEEecCCeEEEeehHHhhhhcccc------cCC
Confidence            34457888888765432     1111111 111    225643 3 3333346789999998876655432      234


Q ss_pred             ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc----ccceeEEEEecCCCEEEEee-------CCCcEEE
Q 024451           96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EGDVNTVKFFPDGNRFGTGS-------DDGTCRL  164 (267)
Q Consensus        96 ~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-------~d~~i~i  164 (267)
                      +|..-.|-.++.--++|   +..|.-|++.....+.+.+.-|    +..|-.-..+++.+.++..|       -.|.+.+
T Consensus       107 ~VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQL  183 (1630)
T 1xi4_A          107 DVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL  183 (1630)
T ss_pred             CceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeee
Confidence            56666776443322333   3479999986444454444433    34466666678888766433       3477888


Q ss_pred             EeCCCCeeeEEEEee-------cCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc---c-----eeeecccccC-
Q 024451          165 FDIRTGHQLQVYYQQ-------HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA---K-----VVLNLGSLQN-  228 (267)
Q Consensus       165 wd~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~---~-----~~~~~~~~~~-  228 (267)
                      |..+.+.. +.+-++       ...+...+..-+||....      ...+.++|-++...   .     ....+...+. 
T Consensus       184 yS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~------~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~  256 (1630)
T 1xi4_A          184 YSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRG------QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA  256 (1630)
T ss_pred             eecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEec------CCCceEEEEecCCCccCCCCCccccccccCCccc
Confidence            87764321 110000       000011111112222111      11368888886432   0     0011111111 


Q ss_pred             CccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          229 SHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       229 ~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ...-|| ++-.++....+..-+.-|.+.+||+..
T Consensus       257 ~~Dfpv-~~~vs~k~g~iy~itk~G~~~~~d~~t  289 (1630)
T 1xi4_A          257 QNDFPV-AMQISEKHDVVFLITKYGYIHLYDLET  289 (1630)
T ss_pred             ccCcce-EEEeccccCEEEEEecCceEEEEeccc
Confidence            122233 566777666777778889999998754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=89.60  E-value=6.6  Score=31.10  Aligned_cols=142  Identities=11%  Similarity=-0.009  Sum_probs=61.3

Q ss_pred             CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC------CeEEEEeCCCcccceEEeecc---cc
Q 024451           69 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGH---EG  139 (267)
Q Consensus        69 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d------~~i~iwd~~~~~~~~~~~~~~---~~  139 (267)
                      ..+.+||..+..-...-...  ..... -.++...  ++++++.|+.+      ..+..+|+.........+...   ..
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p--~~~~~-~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~  242 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESP--WYGTA-GAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG  242 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECS--SCCCB-SCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred             ccEEEEeCCCCcEEECCCCC--CCCcc-cccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence            57889999876543321111  01111 0223332  45677777642      346667652112222222211   11


Q ss_pred             ceeEEEEecCCCEEEEeeCC----------------------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC
Q 024451          140 DVNTVKFFPDGNRFGTGSDD----------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG  197 (267)
Q Consensus       140 ~i~~~~~~~~~~~l~~~~~d----------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  197 (267)
                      .........+++.++.|+.+                      ..+.+||+.+.+-...  ...... ...-.+  ...++
T Consensus       243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~-r~~~~~--~~~~~  317 (357)
T 2uvk_A          243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS--GELSQG-RAYGVS--LPWNN  317 (357)
T ss_dssp             CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE--EECSSC-CBSSEE--EEETT
T ss_pred             cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC--CCCCCC-ccccee--EEeCC
Confidence            11111222356777777632                      2577899876543221  111111 111122  23466


Q ss_pred             CEEEEEEeCC------eEEEEeCCcccee
Q 024451          198 RLLFAGYSNG------DCYVWDTLLAKVV  220 (267)
Q Consensus       198 ~~l~~g~~dg------~i~i~d~~~~~~~  220 (267)
                      .+++.|+.++      .+.++++...+..
T Consensus       318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          318 SLLIIGGETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred             EEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence            7777776542      3555566555443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.57  E-value=4.1  Score=32.54  Aligned_cols=111  Identities=10%  Similarity=0.064  Sum_probs=64.6

Q ss_pred             eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEe--CCCCeEEEEe-cCCCeEEEEeCCCcccceEEeec
Q 024451           60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS--GSNSRMFVSG-SCDSTARLWDTRVASRAVRTFHG  136 (267)
Q Consensus        60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~s~-~~d~~i~iwd~~~~~~~~~~~~~  136 (267)
                      ..++.++.||.|.-.|.++++....+...    ....+....-.  +.++..++.. ..||.|..++...+... ..+..
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~----~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~   85 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE----NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSI   85 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG----GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC----ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeecc
Confidence            46888999999999999999887776432    00111111000  0122344444 57899998887643221 11111


Q ss_pred             cccce--eEEEEe-----------cCCCEEEEeeCCCcEEEEeCCCCeeeEEE
Q 024451          137 HEGDV--NTVKFF-----------PDGNRFGTGSDDGTCRLFDIRTGHQLQVY  176 (267)
Q Consensus       137 ~~~~i--~~~~~~-----------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  176 (267)
                      . ..+  .-+...           ..+..+++++.++.+--.|.++|+.+..+
T Consensus        86 ~-~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A           86 R-QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             H-HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred             c-cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            0 001  001110           13557888999999999999999877654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.16  E-value=9  Score=32.05  Aligned_cols=110  Identities=16%  Similarity=0.110  Sum_probs=57.7

Q ss_pred             ceeEEEEecCCC-EEEEeeCCCcEEEEeCCCCe---eeEEEEeecCC----CCCCcEEEEEEccC---CCEEEEEEe-C-
Q 024451          140 DVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGH---QLQVYYQQHGE----NEIPHVTSIAFSIS---GRLLFAGYS-N-  206 (267)
Q Consensus       140 ~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~----~~~~~v~~~~~s~~---~~~l~~g~~-d-  206 (267)
                      .-..++|.|++. .+..+-+.|.|++++.....   .+..+......    ........++|+|+   +.+|.+..+ + 
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            347889999985 34445678999999754221   11111100100    11235788999996   334444332 1 


Q ss_pred             -----------CeEEEEeCCc----------cceeeecccccCCccceEEEEEECCCCCeEEEeEC
Q 024451          207 -----------GDCYVWDTLL----------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  251 (267)
Q Consensus       207 -----------g~i~i~d~~~----------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~  251 (267)
                                 ..|.-|....          .+.+.........|.  ...|+|.|||.+.++.+.
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCC
Confidence                       1333354321          122222211123465  478999999987776554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=87.73  E-value=3  Score=33.30  Aligned_cols=113  Identities=9%  Similarity=0.065  Sum_probs=60.3

Q ss_pred             EEEEecCCCeEEEEeCCCcccceEEeecc-ccceeEEEE--ec-CCCEEEEe-eCCCcEEEEeCCCCeeeEEEEeecCCC
Q 024451          109 MFVSGSCDSTARLWDTRVASRAVRTFHGH-EGDVNTVKF--FP-DGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGEN  183 (267)
Q Consensus       109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~--~~-~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~  183 (267)
                      +++.++.||.|.-.|.+.+.... .+... ..+.....-  .+ ++..++.. +.||.+..+|..++.....+...... 
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W-~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv-   89 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIW-SIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV-   89 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEE-EECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH-
T ss_pred             EEEEEeCCCeEEEEECCCCcEEE-EecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce-
Confidence            56677888888888876543322 22221 011111110  01 22334443 68999999998877543222111100 


Q ss_pred             CCCcEEE----EEE----ccCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451          184 EIPHVTS----IAF----SISGRLLFAGYSNGDCYVWDTLLAKVVLNL  223 (267)
Q Consensus       184 ~~~~v~~----~~~----s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  223 (267)
                      ...++..    +..    +..+..+++|+.+|.++-.|+.+++.+..+
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            1111111    000    015668899999999999999988877654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.53  E-value=3.4  Score=38.05  Aligned_cols=36  Identities=17%  Similarity=0.175  Sum_probs=30.2

Q ss_pred             ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEE
Q 024451          140 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV  175 (267)
Q Consensus       140 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  175 (267)
                      .+.++...++..++.+-+.|+++|+|++.+++++..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t  272 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  272 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence            356677777888999999999999999999887654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=87.49  E-value=11  Score=31.28  Aligned_cols=107  Identities=7%  Similarity=0.050  Sum_probs=54.2

Q ss_pred             eEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-ceEEeec------cccceeEEEEecC---CCEEE-EeeC-------
Q 024451           97 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHG------HEGDVNTVKFFPD---GNRFG-TGSD-------  158 (267)
Q Consensus        97 i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~~~~~~~------~~~~i~~~~~~~~---~~~l~-~~~~-------  158 (267)
                      ...+++.+ +++++++....+.|++++...... .+..+..      .......++|+|+   +..|. +-+.       
T Consensus        29 P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           29 PHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             EEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             ceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            45677775 456766655445688776532211 1111111      1345678999995   44444 3332       


Q ss_pred             -----CCcEEEEeCCCC----eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451          159 -----DGTCRLFDIRTG----HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY  204 (267)
Q Consensus       159 -----d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~  204 (267)
                           ...|.-++....    .....+..............++|.|+|.+.++.+
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                 124544554322    1112222211111122468999999998776644

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=86.68  E-value=22  Score=33.66  Aligned_cols=112  Identities=14%  Similarity=0.111  Sum_probs=63.8

Q ss_pred             cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC------CCEEEEeeC-CCcEEEEeC
Q 024451           95 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD------GNRFGTGSD-DGTCRLFDI  167 (267)
Q Consensus        95 ~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~-d~~i~iwd~  167 (267)
                      ..|...+.+.  . +++.+. ++.+.++++.........-..-...|.|+++.|.      +++++.|.. |++++|+++
T Consensus       514 ~~I~~As~n~--~-~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL  589 (1158)
T 3ei3_A          514 KNISVASCNS--S-QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL  589 (1158)
T ss_dssp             CCCCEEEECS--S-EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred             CEEEEEEeCC--C-EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence            3455555442  3 344444 5778887765321111111122457999998763      368899986 999999999


Q ss_pred             CCCeeeEEEEeecCCCCCCcEEEEEEc--cCCCEEEEEEeCCeEEEEeC
Q 024451          168 RTGHQLQVYYQQHGENEIPHVTSIAFS--ISGRLLFAGYSNGDCYVWDT  214 (267)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~g~~dg~i~i~d~  214 (267)
                      .+.+.+...  .-..  .....++.+.  ....+|.+|-.||.+.-+.+
T Consensus       590 ~~l~~~~~~--~L~~--~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~  634 (1158)
T 3ei3_A          590 PSFELLHKE--MLGG--EIIPRSILMTTFESSHYLLCALGDGALFYFGL  634 (1158)
T ss_dssp             TTCCEEEEE--ECCS--SCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred             CCCCeEEEE--ECCC--CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence            865443221  1111  1123444433  23468899999998765543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=86.43  E-value=17  Score=32.15  Aligned_cols=156  Identities=14%  Similarity=0.128  Sum_probs=74.7

Q ss_pred             CCCeEEEccCCC------eEEEeecCCCCC-CCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC--eEEEEeCCC
Q 024451            8 TGQSVACGGLDS------VCSIFNLNSPTD-KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITT   78 (267)
Q Consensus         8 ~g~~l~~~~~d~------~v~~w~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~   78 (267)
                      ++++++.||.++      .+.+||.....= ....+|..  ..+|.     +....++ ..++.|+.++  .+.+||..+
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~--R~~h~-----~~~~~~~-~iyv~GG~~~~~~v~~yd~~t  522 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT--RFRHS-----ACSLPDG-NVLILGGVTEGPAMLLYNVTE  522 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC--CBSCE-----EEECTTS-CEEEECCBCSSCSEEEEETTT
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC--cccce-----EEEEcCC-EEEEECCCCCCCCEEEEECCC
Confidence            777888887543      466777654210 00111111  12232     2222233 4566666544  688999987


Q ss_pred             CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC--C-----CeEEEEeCCCccc----ceEEeecc--ccc-eeEE
Q 024451           79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC--D-----STARLWDTRVASR----AVRTFHGH--EGD-VNTV  144 (267)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~--d-----~~i~iwd~~~~~~----~~~~~~~~--~~~-i~~~  144 (267)
                      ..-...-..............+.+....+++++.||.  +     ..+.+||+....-    ....+...  ... -.++
T Consensus       523 ~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~  602 (695)
T 2zwa_A          523 EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI  602 (695)
T ss_dssp             TEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE
T ss_pred             CceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE
Confidence            6543322100000011111223344443678888876  2     3578888764330    02222111  111 1233


Q ss_pred             EEecCCCEEEEeeCC--------CcEEEEeCCCCe
Q 024451          145 KFFPDGNRFGTGSDD--------GTCRLFDIRTGH  171 (267)
Q Consensus       145 ~~~~~~~~l~~~~~d--------~~i~iwd~~~~~  171 (267)
                      ....+++.++.||.+        ..+.+||+.+.+
T Consensus       603 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             EEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            333336777777743        458888887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=85.94  E-value=14  Score=30.79  Aligned_cols=220  Identities=12%  Similarity=0.147  Sum_probs=117.6

Q ss_pred             cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCcc
Q 024451           16 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA   95 (267)
Q Consensus        16 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~   95 (267)
                      +.+.+|.+-|+..+.+.     ..+.+.+ .+    .--+|.. ..++-= ...++.|+|+++..+...+.      ..+
T Consensus        45 ~~~~~vvIiDl~~~~~~-----~rrpi~A-ds----AIMnP~~-~iiALr-ag~~lQiFnle~K~klks~~------~~e  106 (494)
T 1bpo_A           45 GEQAQVVIIDMNDPSNP-----IRRPISA-DS----AIMNPAS-KVIALK-AGKTLQIFNIEMKSKMKAHT------MTD  106 (494)
T ss_dssp             TTCCEEEEEETTSTTSC-----EEEECCC-SE----EEECSSS-SCEEEE-ETTEEEEEETTTTEEEEEEE------CSS
T ss_pred             CCCCeEEEEECCCCCcc-----eeccccc-ce----eeeCCCC-cEEEEe-cCCeEEEEchHHhhhhccee------cCC
Confidence            34558888888765421     2222222 22    2236754 344433 37799999999988776553      234


Q ss_pred             ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc----cceeEEEEecCCCEEEEee-------CCCcEEE
Q 024451           96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE----GDVNTVKFFPDGNRFGTGS-------DDGTCRL  164 (267)
Q Consensus        96 ~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~d~~i~i  164 (267)
                      .|..-.|-.++  .++-.+ +..|.-|++.....+.+.+.-|.    ..|-.-..+++.+.++..|       -.|.+.+
T Consensus       107 ~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL  183 (494)
T 1bpo_A          107 DVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL  183 (494)
T ss_dssp             CCCEEEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEE
T ss_pred             CceEEEecCCC--eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEE
Confidence            56666676443  232222 34799999875556666665543    3466667788888776443       2367888


Q ss_pred             EeCCCCeeeEEEEeecCCCCCCcEEEEEEc--cCC-CEEEEEEe---CCeEEEEeCCcc--------ceeeecccccCCc
Q 024451          165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFS--ISG-RLLFAGYS---NGDCYVWDTLLA--------KVVLNLGSLQNSH  230 (267)
Q Consensus       165 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~-~~l~~g~~---dg~i~i~d~~~~--------~~~~~~~~~~~~~  230 (267)
                      |..+.... +.+ +    ++...-..+.+.  +.. ..+..+..   .+.+++-++...        +....+...+..-
T Consensus       184 YS~er~~s-Q~i-e----Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~  257 (494)
T 1bpo_A          184 YSVDRKVS-QPI-E----GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ  257 (494)
T ss_dssp             EESTTCCE-EEE-C----CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTST
T ss_pred             eecccccc-chh-e----eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccc
Confidence            88765321 111 1    110111111111  000 12222222   378999886432        1111111111111


Q ss_pred             cceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          231 EGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       231 ~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .+--.++-+++....+..-+.-|.+.+||+..
T Consensus       258 ~DFPvamqvs~kygviyviTK~G~i~lyDleT  289 (494)
T 1bpo_A          258 NDFPVAMQISEKHDVVFLITKYGYIHLYDLET  289 (494)
T ss_dssp             TCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred             cCceeEEEecccCCEEEEEecCceEEEEeccc
Confidence            22234577787777777788999999999754

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.60  E-value=7.2  Score=35.97  Aligned_cols=37  Identities=14%  Similarity=0.112  Sum_probs=28.2

Q ss_pred             eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451           48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF   85 (267)
Q Consensus        48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~   85 (267)
                      .+.++...++ ..++++-+.|+++|+|++.++......
T Consensus       237 ~~~~~~~~~~-~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETT-TTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCC-CcEEEEEECCCEEEEEECCCCCeEeee
Confidence            3455555554 468999999999999999998766654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=83.76  E-value=15  Score=29.27  Aligned_cols=70  Identities=17%  Similarity=0.195  Sum_probs=40.5

Q ss_pred             EEEEEEcc-------CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          188 VTSIAFSI-------SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       188 v~~~~~s~-------~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      +..+.|..       ++.++++-...+.|...++...+..... .+.......+..+++.|||.++++.. +..=+||.
T Consensus       273 p~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~rp~~v~~~pdG~lyv~td-~~~g~I~r  349 (353)
T 2g8s_A          273 VSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDG-RILTDRGQRIRDVRTGPDGYLYVLTD-ESSGELLK  349 (353)
T ss_dssp             EEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEE-EESGGGCCCEEEEEECTTSCEEEEEC-STTEEEEE
T ss_pred             cceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeE-EcccCCCCceeEEEECCCCcEEEEEe-CCCCEEEE
Confidence            45666653       4667777667788887776543322111 11112234788999999998766432 22234554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=83.21  E-value=5.9  Score=31.68  Aligned_cols=63  Identities=13%  Similarity=0.133  Sum_probs=37.0

Q ss_pred             cEEEEEEccCCCEEEEEEeCCeEEEEeCCccc--eeeecccccCCccceEEEEEECCC----CCeEEEe
Q 024451          187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--VVLNLGSLQNSHEGRITCLGLSAD----GSALCTG  249 (267)
Q Consensus       187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~~p~----~~~l~sg  249 (267)
                      ....++|.|+|+.++++...|.|++++.....  .+...........+....++++|+    +.+.++-
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence            36899999999934445567999999853211  111111111123345789999995    4444443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=81.40  E-value=17  Score=28.17  Aligned_cols=104  Identities=13%  Similarity=0.167  Sum_probs=51.0

Q ss_pred             CeeEEEeeCC-------CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC------CeEEEEeCC
Q 024451           59 DTHLITSSGD-------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTR  125 (267)
Q Consensus        59 ~~~l~s~~~d-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d------~~i~iwd~~  125 (267)
                      +..++.|+.+       ..+.+||..+..-...-...    ....-.+....  ++++++.|+.+      ..+.++|..
T Consensus       110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~  183 (318)
T 2woz_A          110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP----IKVYGHNVISH--NGMIYCLGGKTDDKKCTNRVFIYNPK  183 (318)
T ss_dssp             TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS----SCEESCEEEEE--TTEEEEECCEESSSCBCCCEEEEETT
T ss_pred             CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC----CcccccEEEEE--CCEEEEEcCCCCCCCccceEEEEcCC
Confidence            3455666643       34778888876533321110    00111122222  45677777642      357888876


Q ss_pred             CcccceEEeeccc-c-ceeEEEEecCCCEEEEeeCC-----CcEEEEeCCCCe
Q 024451          126 VASRAVRTFHGHE-G-DVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGH  171 (267)
Q Consensus       126 ~~~~~~~~~~~~~-~-~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~  171 (267)
                      ..  ....+.... . .-.++.. -+++.++.|+.+     ..+.+||+.+.+
T Consensus       184 ~~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          184 KG--DWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             TT--EEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             CC--EEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            42  222222111 1 1122222 256677777643     347788887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	267
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-28
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-21
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	9e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.004
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	9e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  109 bits (273), Expect = 1e-28
 Identities = 75/153 (49%), Positives = 101/153 (66%), Gaps = 8/153 (5%)

Query: 106 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 165
           ++R+FVSG+CD++A+LWD R      +TF GHE D+N + FFP+GN F TGSDD TCRLF
Sbjct: 195 DTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253

Query: 166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 225
           D+R   +L  Y   +       +TS++FS SGRLL AGY + +C VWD L A     L  
Sbjct: 254 DLRADQELMTYSHDNIIC---GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-- 308

Query: 226 LQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
               H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct: 309 --AGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.4 bits (207), Expect = 1e-19
 Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 12/170 (7%)

Query: 45  HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 104
                     +  +    ++ + D +  LWD+  G+    F     +GH +D+ ++    
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-----TGHESDINAICFF- 235

Query: 105 SNSRMFVSGSCDSTARL-WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 163
            N   F +GS D+T RL            +       + +V F   G     G DD  C 
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295

Query: 164 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 213
           ++D     +  V            V+ +  +  G  +  G  +    +W+
Sbjct: 296 VWDALKADRAGVLAGHDNR-----VSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.2 bits (196), Expect = 5e-18
 Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 13/166 (7%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           M+ + +P  +    G  D+   ++++             +  +GH+  ++   + P+ + 
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGM-------CRQTFTGHESDINAICFFPNGN- 239

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
              T S D TC L+D+                    + SVS S  + R+ ++G  D    
Sbjct: 240 AFATGSDDATCRLFDLR---ADQELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCN 295

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 166
           +WD   A R      GH+  V+ +    DG    TGS D   ++++
Sbjct: 296 VWDALKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.1 bits (157), Expect = 8e-13
 Identities = 46/267 (17%), Positives = 87/267 (32%), Gaps = 56/267 (20%)

Query: 35  NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT 94
            +   R L GH   +    +  D    L+++S D   ++WD  T  +            +
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAI-----PLRS 97

Query: 95  ADVLSVSISGSNSRMFVSGSCDSTAR---------------------------------- 120
           + V++ + + S + +   G  +  +                                   
Sbjct: 98  SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157

Query: 121 ---------LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 171
                            +   TF GH GDV ++   PD   F +G+ D + +L+D+R G 
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217

Query: 172 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 231
             Q +     +     + +I F  +G     G  +  C ++D         +    ++  
Sbjct: 218 CRQTFTGHESD-----INAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNII 270

Query: 232 GRITCLGLSADGSALCTGSWDTNLKIW 258
             IT +  S  G  L  G  D N  +W
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVW 297

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.0 bits (128), Expect = 5e-09
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 184
           R+  R  RT  GH   +  + +  D     + S DG   ++D  T +++     +     
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW-- 99

Query: 185 IPHVTSIAFSISGRLLFAGYSNGDCYVWD 213
              V + A++ SG  +  G  +  C +++
Sbjct: 100 ---VMTCAYAPSGNYVACGGLDNICSIYN 125

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.7 bits (226), Expect = 3e-22
 Identities = 55/318 (17%), Positives = 94/318 (29%), Gaps = 84/318 (26%)

Query: 2   TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---- 57
              F P    +     D+   +++  +           R L GH   V    +       
Sbjct: 22  RVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGHTDSVQDISFDHSGKLL 74

Query: 58  -------------------------------------EDTHLITSSGDQTCVLWDITTGL 80
                                                   H++++S D+T  +W++ TG 
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 81  RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 140
               F     +GH   V  V  +  +  +  S S D T R+W              H   
Sbjct: 135 CVKTF-----TGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVA-TKECKAELREHRHV 187

Query: 141 VNTVKF--------------------FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           V  + +                       G    +GS D T +++D+ TG  L       
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 247

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
                  V  + F   G+ + +   +    VWD    + +  L    N+HE  +T L   
Sbjct: 248 NW-----VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL----NAHEHFVTSLDFH 298

Query: 241 ADGSALCTGSWDTNLKIW 258
                + TGS D  +K+W
Sbjct: 299 KTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.9 bits (216), Expect = 6e-21
 Identities = 44/227 (19%), Positives = 79/227 (34%), Gaps = 28/227 (12%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
            + +  P G  +     D    ++ + +           +  +GH+ +V   +   D  T
Sbjct: 105 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-------KTFTGHREWVRMVRPNQD-GT 156

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGG--------------EFQSGHTADVLSVSISGSN 106
            + + S DQT  +W + T    +                   + S   A       SG  
Sbjct: 157 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 216

Query: 107 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 166
               +SGS D T ++WD       + T  GH+  V  V F   G    + +DD T R++D
Sbjct: 217 GPFLLSGSRDKTIKMWDVS-TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 275

Query: 167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 213
            +    ++             VTS+ F  +   +  G  +    VW+
Sbjct: 276 YKNKRCMKTLNAHEHF-----VTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.9 bits (159), Expect = 3e-13
 Identities = 48/238 (20%), Positives = 90/238 (37%), Gaps = 29/238 (12%)

Query: 37  PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 96
           P    LSGH+  V+   + P     ++++S D T  +WD  TG            GHT  
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTL-----KGHTDS 61

Query: 97  VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 156
           V  +S   S   +    +  +             +RT HGH+ +V++V   P+G+   + 
Sbjct: 62  VQDISFDHSGKLLASCSADMTIKLWDFQGF--ECIRTMHGHDHNVSSVSIMPNGDHIVSA 119

Query: 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216
           S D T ++++++TG+ ++ +           V  +  +  G L+ +  ++    VW    
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHRE-----WVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174

Query: 217 AKVVLNLGSLQN----------------SHEGRITCLGLSADGSALCTGSWDTNLKIW 258
            +    L   ++                S             G  L +GS D  +K+W
Sbjct: 175 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 120 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 176
           + W  R          GH   V  V F P  +   + S+D T +++D  TG   +  
Sbjct: 1   KEWIPR--PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL 55

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.5 bits (220), Expect = 3e-21
 Identities = 48/320 (15%), Positives = 92/320 (28%), Gaps = 68/320 (21%)

Query: 3   CAFSPTGQSVACGGLDSVC----------SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC 52
             FS  G+ +A G   +            +  + +S  +KD     +        Y+   
Sbjct: 68  VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127

Query: 53  QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS----------- 101
            + PD       +      +       +   + G E          S             
Sbjct: 128 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 187

Query: 102 ------------------------ISGSNSRMFVSGSCDSTARLWDTR------VASRAV 131
                                   +S  + +   +GS D   R+WD+             
Sbjct: 188 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN 247

Query: 132 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI------ 185
            +  GH+  V +V F  DG    +GS D + +L++++  +        +           
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307

Query: 186 -PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG------ 238
              V S+A + +   + +G  +     WD      +L L      H   +  +       
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML----QGHRNSVISVAVANGSS 363

Query: 239 LSADGSALCTGSWDTNLKIW 258
           L  + +   TGS D   +IW
Sbjct: 364 LGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.7 bits (218), Expect = 8e-21
 Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 16/181 (8%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
                   G+ +A G LD    +++  +    +     +   +GHK  V    +  D   
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ- 267

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEF-------QSGHTADVLSVSISGSNSRMFVSG 113
            +++ S D++  LW++      S               GH   VLSV+ +  N    +SG
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QNDEYILSG 326

Query: 114 SCDSTARLWDTRVASRAVRTFHGHEGDVNTV------KFFPDGNRFGTGSDDGTCRLFDI 167
           S D     WD + +   +    GH   V +V         P+ N F TGS D   R++  
Sbjct: 327 SKDRGVLFWDKK-SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

Query: 168 R 168
           +
Sbjct: 386 K 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.1 bits (193), Expect = 2e-17
 Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 15/183 (8%)

Query: 45  HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ--SGHTADVLSVSI 102
            +  V+     P +  ++   S D+   +WD  TG        E +  +GH   V SV  
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 262

Query: 103 SGSNSRMFVSGSCDSTARLWDTRVASRA-----------VRTFHGHEGDVNTVKFFPDGN 151
           +  + +  VSGS D + +LW+ + A+               T+ GH+  V +V    +  
Sbjct: 263 T-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 321

Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-NEIPHVTSIAFSISGRLLFAGYSNGDCY 210
              +GS D     +D ++G+ L +          +      +      +   G  +    
Sbjct: 322 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 381

Query: 211 VWD 213
           +W 
Sbjct: 382 IWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.1 bits (149), Expect = 9e-12
 Identities = 54/268 (20%), Positives = 103/268 (38%), Gaps = 28/268 (10%)

Query: 15  GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 74
              +    ++N   P + D  L  S     H   V C ++  D     + +  ++T  ++
Sbjct: 34  KQTNDYYILYNPALPREIDVELHKSL---DHTSVVCCVKFSNDG--EYLATGCNKTTQVY 88

Query: 75  DITTGLRTSVFGGEFQS-------------GHTADVLSVSISGSNSRMFVSGSCDSTARL 121
            ++ G   +    +  +                  + SV  S  + +   +G+ D   R 
Sbjct: 89  RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGAEDRLIR- 146

Query: 122 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 181
                  + V    GHE D+ ++ +FP G++  +GS D T R++D+RTG        + G
Sbjct: 147 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG 206

Query: 182 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS---HEGRITCLG 238
                  T       G+ + AG  +    VWD+    +V  L S   S   H+  +  + 
Sbjct: 207 -----VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 261

Query: 239 LSADGSALCTGSWDTNLKIWAFGGYRRV 266
            + DG ++ +GS D ++K+W        
Sbjct: 262 FTRDGQSVVSGSLDRSVKLWNLQNANNK 289

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 5e-07
 Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 17/132 (12%)

Query: 97  VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRF 153
              + +   +    +    +    L++  +        H    H   V  VKF  DG   
Sbjct: 18  PFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYL 77

Query: 154 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP-------------HVTSIAFSISGRLL 200
            TG +  T +++ +  G  +         N+ P             ++ S+ FS  G+ L
Sbjct: 78  ATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136

Query: 201 FAGYSNGDCYVW 212
             G  +    +W
Sbjct: 137 ATGAEDRLIRIW 148

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 2e-16
 Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 12/217 (5%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
                     +V C   D    +        K  +      L   +G+ +    +  +  
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI 188

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           H+++ S D +  +WD+ TG           +GH +    + +      + VSG+ DST +
Sbjct: 189 HVVSGSLDTSIRVWDVETGNCIHTL-----TGHQSLTSGMELKD---NILVSGNADSTVK 240

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
           +WD +           ++          + N   T SDDGT +L+D++TG  ++      
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGD----CYVWD 213
                  V  I  S +  +   G  NG       V D
Sbjct: 301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 5e-13
 Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 20/221 (9%)

Query: 45  HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 104
             G+V+  + V  +   +++ + D    +WD  T             GHT  V S+   G
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL-----QGHTNRVYSLQFDG 187

Query: 105 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164
                 VSGS D++ R+WD       + T  GH+   + ++     N   +G+ D T ++
Sbjct: 188 ---IHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKI 241

Query: 165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG 224
           +DI+TG  LQ     +               +   +     +G   +WD    + + NL 
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTC----LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297

Query: 225 SLQNS-HEGRITCLGLSADGSALCTGSWD----TNLKIWAF 260
           +L++    G +  +  S        GS +    T L +  F
Sbjct: 298 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 8e-10
 Identities = 45/227 (19%), Positives = 71/227 (31%), Gaps = 26/227 (11%)

Query: 32  KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 91
           + G L   ++L GH  +V  C  +      +++ S D T  +W   TG            
Sbjct: 2   RRGELKSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-----V 54

Query: 92  GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
           GHT  V S  +  +      +              A         +              
Sbjct: 55  GHTGGVWSSQMRDNIIISGSTDRT------LKVWNAETGECIHTLYGHTSTVRCMHLHEK 108

Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211
           R  +GS D T R++DI TG  L V                      R + +G  +    V
Sbjct: 109 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG-------RRVVSGAYDFMVKV 161

Query: 212 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
           WD      +  L               L  DG  + +GS DT++++W
Sbjct: 162 WDPETETCLHTL------QGHTNRVYSLQFDGIHVVSGSLDTSIRVW 202

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.0 bits (164), Expect = 8e-14
 Identities = 21/267 (7%), Positives = 58/267 (21%), Gaps = 16/267 (5%)

Query: 3   CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
               P+   +     D   +++  +                 +K  + CC ++ + D  +
Sbjct: 17  IKIIPSKSLLLITSWDGSLTVYKFDIQA----KNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 63  ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 122
              +     +  D+              +     +         +  +         R +
Sbjct: 73  YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 182
              V +      +  +          + +R   G ++   + F +          ++ G 
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG- 191

Query: 183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN-----------SHE 231
            +                     +G   V          N                 +  
Sbjct: 192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA 251

Query: 232 GRITCLGLSADGSALCTGSWDTNLKIW 258
             +  +  S     L T   D  +  W
Sbjct: 252 YPVNSIEFSPRHKFLYTAGSDGIISCW 278

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 4e-13
 Identities = 25/222 (11%), Positives = 56/222 (25%), Gaps = 4/222 (1%)

Query: 40  RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
           ++    K Y+S  + +P   + L+ +S D +  ++      +           +   +L 
Sbjct: 5   QIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLC 61

Query: 100 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159
            +   +       G+        D   +       +               ++    S D
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 160 GTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 218
           G   + D R  G  +      +  N            +   L  G +N     +   L +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181

Query: 219 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
                               L  +       S D  + +  F
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 9e-10
 Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 2/82 (2%)

Query: 131 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS 190
           V+     +  ++ +K  P  +     S DG+  ++      +     Q         +  
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--PLLC 61

Query: 191 IAFSISGRLLFAGYSNGDCYVW 212
             F  +  L     +     + 
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILK 83

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 21/187 (11%), Positives = 53/187 (28%), Gaps = 22/187 (11%)

Query: 43  SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 102
           S +    +    +    + LI    +     + +         G   +SG    +  V++
Sbjct: 144 SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC--EDDNGTIEESGLKYQIRDVAL 201

Query: 103 SGSNSRMFVSGSCDSTARLWDTRVAS--------------RAVRTFHGHEGDVNTVKFFP 148
                  +   S D    +                     R           VN+++F P
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261

Query: 149 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD 208
                 T   DG    ++++T  +++ + + +        + +  + S  +L    S+  
Sbjct: 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE------DSVVKIACSDNILCLATSDDT 315

Query: 209 CYVWDTL 215
                 +
Sbjct: 316 FKTNAAI 322

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 66.8 bits (161), Expect = 2e-13
 Identities = 17/177 (9%), Positives = 46/177 (25%), Gaps = 9/177 (5%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
              AF    +++      S+    +          +    ++    G  +  + VP   T
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT 241

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS--ISGSNSRMFVSGSCDST 118
               +       ++  ++ +              + +L  S  + G  +  +        
Sbjct: 242 --SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV 299

Query: 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 175
              +D        R     + ++  ++   D        DDG    F +      + 
Sbjct: 300 LLKYDV-----KTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 62.2 bits (149), Expect = 8e-12
 Identities = 12/182 (6%), Positives = 40/182 (21%), Gaps = 17/182 (9%)

Query: 40  RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GHTADV 97
              +    +     +  D   +L   S        D      +     +           
Sbjct: 172 FAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSP 230

Query: 98  LSVSISGSNS-----RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 152
               +   +         ++     ++ +       R +          +          
Sbjct: 231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY 290

Query: 153 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 212
           +    + G    +D++T         +       ++T +  S   + +     +G  Y +
Sbjct: 291 YQGAPEKGVLLKYDVKTRKV-----TEVKN----NLTDLRLSADRKTVMVRKDDGKIYTF 341

Query: 213 DT 214
             
Sbjct: 342 PL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 58.3 bits (139), Expect = 1e-10
 Identities = 27/222 (12%), Positives = 46/222 (20%), Gaps = 23/222 (10%)

Query: 45  HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 104
                    Y              Q   ++D+      +           A         
Sbjct: 135 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFD------- 187

Query: 105 SNSRMFVSGSCDSTARLWDTRVASRA------VRTFHGHEGDVNTVKFFPDGNRFGTGSD 158
           ++S+     S  S     D  V + +              G  N  K  P       G  
Sbjct: 188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 247

Query: 159 --DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216
             +   +                  E+ I   +                 G    +D   
Sbjct: 248 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT 307

Query: 217 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
            KV           +  +T L LSAD   +     D  +  +
Sbjct: 308 RKVT--------EVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.5 bits (116), Expect = 1e-07
 Identities = 18/267 (6%), Positives = 45/267 (16%), Gaps = 12/267 (4%)

Query: 4   AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 63
                 +     G      +   +  T K      +     + G V       +    ++
Sbjct: 49  RRGGDTKVAFIHGTREGDFLGIYDYRTGK------AEKFEENLGNVFAMGVDRNGKFAVV 102

Query: 64  TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL-W 122
            +   +   +   T          E          +         +    +     +   
Sbjct: 103 ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162

Query: 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 182
              +  R +              F  D       S        D    +       +   
Sbjct: 163 VYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 222

Query: 183 NEIPH--VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL--- 237
             +                  AG  + +     +    V      +    E  I      
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282

Query: 238 GLSADGSALCTGSWDTNLKIWAFGGYR 264
                 +          L  +     +
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTRK 309

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 3e-13
 Identities = 30/291 (10%), Positives = 71/291 (24%), Gaps = 49/291 (16%)

Query: 3   CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
              S   + V  GG   V  +++++ P +K     +         Y+  C+ +PD  T +
Sbjct: 57  VTISNPTRHVYTGGKGCVK-VWDISHPGNKSPVSQLD--CLNRDNYIRSCKLLPDGCTLI 113

Query: 63  ITSSG-----------------------------------DQTCVLWDITTGLRTSVFGG 87
           +                                                       +   
Sbjct: 114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ 173

Query: 88  EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 147
                        S    ++      +      +    +        H     + ++ + 
Sbjct: 174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYC 233

Query: 148 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 207
           P G     G +     +  +    + Q++  +        V S+ F+  G+   +   + 
Sbjct: 234 PTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES------CVLSLKFAYCGKWFVSTGKDN 287

Query: 208 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
               W T     +             +    +S D   + TGS D    ++
Sbjct: 288 LLNAWRTPYGASIFQSK-----ESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 4e-10
 Identities = 21/116 (18%), Positives = 32/116 (27%), Gaps = 3/116 (2%)

Query: 97  VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 156
             S  ++       V    D+       R  +R + T   H   V  V          TG
Sbjct: 12  AYSFHVTADGQMQPVPFPPDALIGPGIPR-HARQINTL-NHGEVVCAVTISNPTRHVYTG 69

Query: 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 212
              G  +++DI          Q    N   ++ S      G  L  G       +W
Sbjct: 70  GK-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 7e-10
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 93  HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 152
           H + VLS+  +    + FVS   D+    W T   +   ++       V +     D   
Sbjct: 264 HESCVLSLKFA-YCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKY 320

Query: 153 FGTGSDDGTCRLFDI 167
             TGS D    ++++
Sbjct: 321 IVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 1e-09
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 134 FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 193
            H HE  V ++KF   G  F +   D     +    G  +    +         V S   
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS------VLSCDI 314

Query: 194 SISGRLLFAGYSNGDCYVWDTL 215
           S+  + +  G  +    V++ +
Sbjct: 315 SVDDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 6/100 (6%)

Query: 92  GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR----VASRAVRTFHGHEGDVNTVKFF 147
            H   V +V+IS + +R   +G      ++WD       +  +       +  + + K  
Sbjct: 49  NHGEVVCAVTIS-NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106

Query: 148 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 187
           PDG     G +  T  ++D+                    
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA 146

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 28/251 (11%), Positives = 53/251 (21%), Gaps = 43/251 (17%)

Query: 44  GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 103
            H   V          T  + + G     +WDI+     S             + S  + 
Sbjct: 49  NHGEVVCAVTISNP--TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106

Query: 104 GSNSRMFVSGSC------------------DSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
                + V G                     +++      +A                + 
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166

Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH------------------ 187
            +   N+       G                    G +                      
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ 226

Query: 188 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 247
           + S+ +  +G  L  G  + +  V       V        + HE  +  L  +  G    
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLH-----VNKPDKYQLHLHESCVLSLKFAYCGKWFV 281

Query: 248 TGSWDTNLKIW 258
           +   D  L  W
Sbjct: 282 STGKDNLLNAW 292

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           ++  F+  G+     G D++ + +              S   S     V  C    D D 
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--------SIFQSKESSSVLSCDISVD-DK 319

Query: 61  HLITSSGDQTCVLWDI 76
           +++T SGD+   ++++
Sbjct: 320 YIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 30/135 (22%), Positives = 42/135 (31%), Gaps = 17/135 (12%)

Query: 125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 184
            + S+   +FH           FP     G G              H  Q+    HGE  
Sbjct: 6   AMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR-----------HARQINTLNHGEV- 53

Query: 185 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ-NSHEGRITCLGLSADG 243
              V ++  S   R ++ G   G   VWD         +  L   + +  I    L  DG
Sbjct: 54  ---VCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 244 SALCTGSWDTNLKIW 258
             L  G   + L IW
Sbjct: 110 CTLIVGGEASTLSIW 124

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.8 bits (157), Expect = 1e-12
 Identities = 19/154 (12%), Positives = 32/154 (20%), Gaps = 10/154 (6%)

Query: 109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 168
             V+        L D                 V+  +    G        DG   + D+ 
Sbjct: 34  FSVTLRDAGQIALIDGS-TYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLW 91

Query: 169 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKVVL------ 221
                 V   + G       TS       +   A  Y      + D    +         
Sbjct: 92  MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 151

Query: 222 -NLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 254
                 +   E R+  +  S           +T 
Sbjct: 152 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 185

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.9 bits (126), Expect = 1e-08
 Identities = 27/232 (11%), Positives = 49/232 (21%), Gaps = 20/232 (8%)

Query: 31  DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 90
           D       + + +G+   V   +       +L     D    + D+     T+V   +  
Sbjct: 48  DGSTYEIKTVLDTGY--AVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 104

Query: 91  SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH----------GHEGD 140
           S   +   S      +              + D                        E  
Sbjct: 105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR 164

Query: 141 VNTVKFFPDGNRF-GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 199
           V  +        F     + G   L D    + L+             +       S R 
Sbjct: 165 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER----FLHDGGLDGSHRY 220

Query: 200 LFAGYSNGD--CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 249
                +  +    +       V +     Q  H GR         G    T 
Sbjct: 221 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATS 272

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (123), Expect = 3e-08
 Identities = 29/209 (13%), Positives = 54/209 (25%), Gaps = 22/209 (10%)

Query: 62  LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121
            +T        L D +T            +G+   V    +S S   +FV G  D    +
Sbjct: 35  SVTLRDAGQIALIDGSTYEIK----TVLDTGY--AVHISRLSASGRYLFVIGR-DGKVNM 87

Query: 122 WDTRVASRA----VRTFHGHEGDVNTVKFFPDGNR-FGTGSDDGTCRLFDIRTGHQLQVY 176
            D  +        ++          +     +               + D  T    ++ 
Sbjct: 88  IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 147

Query: 177 YQQHGENEI------PHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 229
             +    +       P V +I  S      +      G   + D        NL + + S
Sbjct: 148 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN---NLKTTEIS 204

Query: 230 HEGRITCLGLSADGSALCTGSWDTNLKIW 258
            E  +   GL        T +   N  + 
Sbjct: 205 AERFLHDGGLDGSHRYFITAANARNKLVV 233

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (156), Expect = 1e-12
 Identities = 29/259 (11%), Positives = 63/259 (24%), Gaps = 40/259 (15%)

Query: 36  LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-------LRTSVFGGE 88
           +  +     H   +             ++ SGD    +WD              S F  +
Sbjct: 4   IATANAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK 60

Query: 89  FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR---------VASRAVRTFHGHEG 139
               H   + ++        +  + S       +                 +      + 
Sbjct: 61  SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120

Query: 140 DVNTVKFFPDGN-----RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP-------- 186
               +K+    +     R       GT  ++              +    +         
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180

Query: 187 -----HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCLGL 239
                  TS+  S  G L+  G++NG   + +    + + N  S     ++   I  +  
Sbjct: 181 MTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239

Query: 240 SADGSALCTGSWDTNLKIW 258
           S  GS L       +    
Sbjct: 240 SPQGSLLAIAHDSNSFGCI 258

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 49/299 (16%), Positives = 88/299 (29%), Gaps = 45/299 (15%)

Query: 4   AFSPTGQSVACGGLDSVCSIFNLNS-----PTDKDGNLPVSRMLSGHKGYVSCCQYVPDE 58
           + S           D    +++        P DK  +  V +    H   +   +    E
Sbjct: 19  SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 78

Query: 59  DTHLITSSGDQTCVLWDITTGLRTSVFGGEF-----QSGHTADVLSVSISGSNS----RM 109
              + T+S     + + IT    T     E               ++    SN       
Sbjct: 79  LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 138

Query: 110 FVSGSCDSTARLWD-----------------TRVASRAVRTFHGHEGDVNTVKFFPDGNR 152
            V+     T  +W                  T      V +         +V     G  
Sbjct: 139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L 197

Query: 153 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP-HVTSIAFSISGRLLFAGYSNGDCYV 211
             TG ++GT ++ ++ T   L  +  QH        + S+ FS  G LL   + +     
Sbjct: 198 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 257

Query: 212 ---WDTLLAKVVLNLGSLQNS---------HEGRITCLGLSADGSALCTGSWDTNLKIW 258
              ++T   + + +L    +S         H   +  L  +  G  LC+  WD  L+ W
Sbjct: 258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 37/238 (15%)

Query: 40  RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
                   + +           + T   + T  + +++T      F  +    + ++ + 
Sbjct: 178 ESPMTPSQFATSVDISER--GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235

Query: 100 VSISGSNSRMFVSGSCDSTA---RLWDTRV------------ASRAVRTFHGHEGDVNTV 144
                    +       ++     L++T              +S+A      H   V ++
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295

Query: 145 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 204
            F   G    +   DG  R +D++T  ++      H ++       +A    G  L    
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTKERITT-LNMHCDDIEIEEDILAVDEHGDSLAEP- 353

Query: 205 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262
                 V+D    K     G   + +E              LC    D +++ +   G
Sbjct: 354 -----GVFDVKFLKKGWRSGMGADLNES-------------LCCVCLDRSIRWFREAG 393

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 8e-12
 Identities = 56/292 (19%), Positives = 92/292 (31%), Gaps = 56/292 (19%)

Query: 4   AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 63
                 Q +  G  D+   I++ N+           R+L+GH G V C QY         
Sbjct: 20  CLQYDDQKIVSGLRDNTIKIWDKNTLE-------CKRILTGHTGSVLCLQYDERVIITGS 72

Query: 64  TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS---------------- 107
           + S  +   +                      + + V+ S   S                
Sbjct: 73  SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132

Query: 108 ----------------RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
                           +  VS S D T ++W+T      VRT +GH+  +  +++     
Sbjct: 133 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS-TCEFVRTLNGHKRGIACLQY--RDR 189

Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211
              +GS D T RL+DI  G  L+V              +       + + +G  +G   V
Sbjct: 190 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-------KRIVSGAYDGKIKV 242

Query: 212 WDTLLAKVVLNLGSLQ-----NSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
           WD + A                 H GR+  L    D   + + S D  + IW
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRL--QFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 4e-09
 Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 30  TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 89
           T K  N      +    G+      +   D  +++ S D T  LWDI  G    V  G  
Sbjct: 159 TIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 218

Query: 90  QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR--------VASRAVRTFHGHEGDV 141
           +               +++  VSG+ D   ++WD            +  +RT   H G V
Sbjct: 219 ELVRCIRF--------DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 270

Query: 142 NTVKFFPDGNRFGTGSDDGTCRLFD 166
             ++F  D  +  + S D T  ++D
Sbjct: 271 FRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 1e-08
 Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 17/125 (13%)

Query: 3   CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
                  + V  G  D+   ++++               L   +G+    + +  ++  +
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECG----------ACLRVLEGHEELVRCIRFDNKRI 231

Query: 63  ITSSGDQTCVLWDITTGLRTSVFGGEFQ----SGHTADVLSVSISGSNSRMFVSGSCDST 118
           ++ + D    +WD+   L      G         H+  V  +          VS S D T
Sbjct: 232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDT 288

Query: 119 ARLWD 123
             +WD
Sbjct: 289 ILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 7e-05
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 90  QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF 146
           +S  +  V  +       +  VSG  D+T ++WD        R   GH G V  +++
Sbjct: 11  RSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLCLQY 63

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 131 VRTFHGHEGDVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQLQVY 176
           ++  H        V     D  +  +G  D T +++D  T    ++ 
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL 51

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.2 bits (149), Expect = 8e-12
 Identities = 33/271 (12%), Positives = 70/271 (25%), Gaps = 25/271 (9%)

Query: 3   CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
            A++     +A    +    I+  +              L  H G V+   + PD    +
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSG-----NKWVQVHELKEHNGQVTGVDWAPD-SNRI 66

Query: 63  ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 122
           +T   D+   +W +              +     V         +    S    S     
Sbjct: 67  VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR-VISICYFE 125

Query: 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 182
                             V ++ + P+      GS D  CR+F        +        
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 183 NEIPH-------------VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 229
           +++P              V  + FS +G  +     +    + D           +   S
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA----DKKMAVATLAS 241

Query: 230 HEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
               +  +    + S +  G  D    ++ +
Sbjct: 242 ETLPLLAVTFITESSLVAAGH-DCFPVLFTY 271

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.2 bits (149), Expect = 1e-11
 Identities = 20/171 (11%), Positives = 43/171 (25%), Gaps = 5/171 (2%)

Query: 89  FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFF 147
           + S     +   + +  +         +    +++        V     H G V  V + 
Sbjct: 2   YHSFLVEPISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 148 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 207
           PD NR  T   D    ++ ++                   V         +    G  + 
Sbjct: 61  PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE---KKFAVGSGSR 117

Query: 208 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
              +              ++      +  L    +   L  GS D   +I+
Sbjct: 118 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.5 bits (129), Expect = 3e-09
 Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 7/167 (4%)

Query: 49  VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 108
           +SC  +  D  T +     +    +++ +      V   +    H   V  V  +  +S 
Sbjct: 10  ISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELK---EHNGQVTGVDWA-PDSN 64

Query: 109 MFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167
             V+   D  A +W  +  + +              V++ P+  +F  GS      +   
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 168 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 214
                     +   +     V S+ +  +  LL AG  +  C ++  
Sbjct: 125 EQ-ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 170

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.1 bits (128), Expect = 5e-09
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 50  SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 109
                    ++ L+ +  D   VL+   +        G+   G   DV   S     +  
Sbjct: 245 PLLAVTFITESSLVAAGHDCFPVLFTYDSA------AGKLSFGGRLDVPKQSSQRGLTAR 298

Query: 110 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN----RFGTGSDDGTCRLF 165
               + D  A    +  A   + +   H+  V+ +     G     +F T   DG   ++
Sbjct: 299 ERFQNLDKKASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

Query: 166 DIRTG 170
           D+R+ 
Sbjct: 357 DVRSL 361

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 34/225 (15%), Positives = 52/225 (23%), Gaps = 30/225 (13%)

Query: 51  CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ-------------SGHTADV 97
                      L   S D  C ++                             S     V
Sbjct: 145 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 204

Query: 98  LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
             V  S + SR+       ST  L D       V T       +  V F  + +    G 
Sbjct: 205 HGVCFSANGSRVAWVSHD-STVCLADADKKMA-VATLASETLPLLAVTFITESSLVAAGH 262

Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 217
           D             +L    +     +       A      L     S G          
Sbjct: 263 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS--------- 313

Query: 218 KVVLNLGSLQNSHEGRITCLGLSADG----SALCTGSWDTNLKIW 258
                   L + H+  ++ + + + G    S  CT   D  + IW
Sbjct: 314 --AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.5 bits (134), Expect = 5e-10
 Identities = 7/75 (9%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 93  HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 152
                   +       +  +GS D+   ++  +   + ++  + H+  VN + +      
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-T 271

Query: 153 FGTGSDDGTCRLFDI 167
             +   D   + +++
Sbjct: 272 LVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 8e-05
 Identities = 9/82 (10%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 134 FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 193
                 +    +   + +   TGS D    ++ ++   ++      H +     V ++ +
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD----GVNNLLW 266

Query: 194 SISGRLLFAGYSNGDCYVWDTL 215
                L+ +G ++     W+ +
Sbjct: 267 ETPSTLVSSG-ADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 14/84 (16%)

Query: 129 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 188
             ++T  GH   +  +      N   +GS DG    +   + HQ               +
Sbjct: 4   EVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSNL----------I 49

Query: 189 TSIAFSISGRLLFAGYSNGDCYVW 212
            S+  S +       + +      
Sbjct: 50  VSLDNSKAQEYSSISWDDTLKVNG 73

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (90), Expect = 2e-04
 Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 15/115 (13%)

Query: 34  GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 93
           G+  V + +SGH   ++     P     LI+ S D   + W  ++  +           H
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ----------DH 45

Query: 94  TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 148
           +  ++S+  S +     +S                   +    +      V    
Sbjct: 46  SNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND 100

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (83), Expect = 0.002
 Identities = 31/275 (11%), Positives = 74/275 (26%), Gaps = 26/275 (9%)

Query: 2   TCAFSPTGQSVACGGLDSVCSIFNLNS------------PTDKDGNLPVSRMLSGHKGYV 49
               +P    +  G  D     ++ +S               K             K   
Sbjct: 18  ALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNG 73

Query: 50  SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 109
                   +      ++   T VL +    L    F G+       +    ++S S + +
Sbjct: 74  ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYV 133

Query: 110 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 169
            V     +T +++       +           + +   P       G   G   L+D+++
Sbjct: 134 AVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS 193

Query: 170 G------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 223
                     +         +     +    I   L+  G  + + +++       ++  
Sbjct: 194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII-- 251

Query: 224 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
               N+H+  +  L      + L +   D  +K W
Sbjct: 252 -KALNAHKDGVNNLLWETPST-LVSSGADACIKRW 284

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.1 bits (133), Expect = 6e-10
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 131 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS 190
            +  +GH   +  +    DG    +   +G    +DI TG   +V+   H       +T 
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT----MITG 60

Query: 191 IAFSISGRLLFAGYSNGDCYVWDT 214
           I  +  G L    + +    V   
Sbjct: 61  IKTTSKGDLFTVSWDDHLKVVPAG 84

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 3e-07
 Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 109 MFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167
              +GS D++  +W+    S   +     H         + +     +   D   + +++
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.4 bits (105), Expect = 3e-06
 Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 5/125 (4%)

Query: 38  VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 97
           + ++  GH   ++      D    L ++  +     WDI+TG+   VF       H   +
Sbjct: 4   IDQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPD----VHATMI 58

Query: 98  LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
             +  +       VS                 +    +        +    DG+      
Sbjct: 59  TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118

Query: 158 DDGTC 162
                
Sbjct: 119 YKHIA 123

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (102), Expect = 6e-06
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 1/89 (1%)

Query: 92  GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
           GH   + ++S S ++ +   S   +     WD             H   +  +K    G+
Sbjct: 10  GHNKAITALSSS-ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68

Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
            F    DD    +    +G          
Sbjct: 69  LFTVSWDDHLKVVPAGGSGVDSSKAVANK 97

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 8e-05
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 45  HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 104
                  C     ++  L T S D + ++W++       +     +  H    ++  I  
Sbjct: 222 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII---IKGAHAMSSVNSVIW- 277

Query: 105 SNSRMFVSGSCDSTARLWD 123
            N    VS   DS  + W+
Sbjct: 278 LNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 4e-04
 Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 3/105 (2%)

Query: 109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 168
           +    S                  ++  H   V  V + PD  R  TGS D +  ++++ 
Sbjct: 195 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 254

Query: 169 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 213
                 +  +           +    ++   + +   + +   W+
Sbjct: 255 KPSDHPIIIKGAHAM---SSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.5 bits (82), Expect = 0.002
 Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
              ++SP    +A G LD+   ++N+N P+D     P+    +     V+   ++ +  T
Sbjct: 228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH----PIIIKGAHAMSSVNSVIWLNE--T 281

Query: 61  HLITSSGDQTCVLWDIT 77
            ++++  D     W++ 
Sbjct: 282 TIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.1 bits (81), Expect = 0.003
 Identities = 23/289 (7%), Positives = 75/289 (25%), Gaps = 42/289 (14%)

Query: 2   TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
             + S  G+++     +   + +++++                H   ++  +        
Sbjct: 17  ALSSSADGKTLFSADAEGHINSWDISTGI------SNRVFPDVHATMITGIKTTS--KGD 68

Query: 62  LITSSGDQTCVLWDITTGL--------------------------------RTSVFGGEF 89
           L T S D    +                                       +        
Sbjct: 69  LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128

Query: 90  QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD 149
           +        + S    ++           +++   +++  +V                  
Sbjct: 129 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 188

Query: 150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC 209
            N     + D + ++      +  ++ +          V  +++S     L  G  +   
Sbjct: 189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 248

Query: 210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
            VW+  + K   +   ++ +H        +  + + + +   D+N+K W
Sbjct: 249 IVWN--MNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 16/208 (7%), Positives = 46/208 (22%), Gaps = 13/208 (6%)

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           +++  +     V+ D        V      +      +   ++      + + +   +  
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITI---ADAGPTPMVPMVAPGGRIAYATVNKSESLV 59

Query: 121 LWDTR----VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 176
             D      +    + T       +      PDG             L            
Sbjct: 60  KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119

Query: 177 YQQHGENEIPH------VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 230
           Y     +          +T +A++  G  L+    +      +         + S +   
Sbjct: 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET 179

Query: 231 EGRITCLGLSADGSALCTGSWDTNLKIW 258
             +   L +     +    +        
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARK 207

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.3 bits (113), Expect = 3e-07
 Identities = 25/281 (8%), Positives = 61/281 (21%), Gaps = 40/281 (14%)

Query: 4   AFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
             +P G+   A           +L +          +        +       PD  T  
Sbjct: 40  MVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF--GAALSPDGKTLA 97

Query: 63  ITSSGDQTCVLWDITTGLRTSVFGGEF-----QSGHTADVLSVSISGSNSRMFVSGSCDS 117
           I  S  +  +        R +++  E             +  ++ +   S+++     D 
Sbjct: 98  IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDL 156

Query: 118 TARLWDTRVASR--------------------AVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
                +                            +                D +     +
Sbjct: 157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA 216

Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 217
                   D+ TG       +               +++     A  +      +D    
Sbjct: 217 YRTGLLTMDLETGEMAMREVRIMDVFYFS------TAVNPAKTRAFGAYNVLESFDLEKN 270

Query: 218 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
             +  +             + +S DGS +  G    +L  +
Sbjct: 271 ASIKRVP-----LPHSYYSVNVSTDGSTVWLGGALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.3 bits (113), Expect = 4e-07
 Identities = 25/235 (10%), Positives = 55/235 (23%), Gaps = 26/235 (11%)

Query: 4   AFSPTGQSVACGGLDSVCSIFNLNS--PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
           A SP G+++A         + +           +          +            D  
Sbjct: 88  ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147

Query: 62  LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM------------ 109
            +   G    V+      L        +++   A    +++   +               
Sbjct: 148 KLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK 207

Query: 110 ----FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 165
                   +  +     D      A+R     +    +    P   R            F
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR--AFGAYNVLESF 265

Query: 166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 220
           D+     ++     H         S+  S  G  ++ G + GD   +D    +  
Sbjct: 266 DLEKNASIKRVPLPHS------YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 17/142 (11%), Positives = 32/142 (22%), Gaps = 10/142 (7%)

Query: 33  DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG 92
           D     ++  S             D D     ++     +  D+ TG             
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDP-ADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242

Query: 93  HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 152
           +         +  N     +    +    +D      A            +V    DG+ 
Sbjct: 243 YF-------STAVNPAKTRAFGAYNVLESFDL--EKNASIKRVPLPHSYYSVNVSTDGST 293

Query: 153 FGTGSDDGTCRLFDIRTGHQLQ 174
              G   G    +D  T  +  
Sbjct: 294 VWLGGALGDLAAYDAETLEKKG 315

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 55.3 bits (132), Expect = 2e-09
 Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 2/104 (1%)

Query: 109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 168
             V+        L D   + + V+        V+  +    G        D    + D+ 
Sbjct: 34  FSVTLRDAGQIALVDGD-SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLW 91

Query: 169 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 212
                +V   + G       +S       R   AG      +  
Sbjct: 92  AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI 135

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 9e-06
 Identities = 16/158 (10%), Positives = 37/158 (23%), Gaps = 15/158 (9%)

Query: 62  LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121
            +T        L D  +            +G+   V    +S S   + V G  D+   +
Sbjct: 35  SVTLRDAGQIALVDGDSKKIV----KVIDTGY--AVHISRMSASGRYLLVIGR-DARIDM 87

Query: 122 WD----TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 177
            D           ++         ++     +      G+              + +   
Sbjct: 88  IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 147

Query: 178 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 215
              G      V +  +    R+     S+        +
Sbjct: 148 STRGMT----VDTQTYHPEPRVAAIIASHEHPEFIVNV 181

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 17/109 (15%), Positives = 27/109 (24%), Gaps = 9/109 (8%)

Query: 155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD- 213
           T  D G   L D  +   ++V     G     H      S SGR L     +    + D 
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVI--DTGYA--VH--ISRMSASGRYLLVIGRDARIDMIDL 90

Query: 214 -TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261
                  V  +           +      +      G++         G
Sbjct: 91  WAKEPTKVAEIKIGIE-ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG 138

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 24/272 (8%), Positives = 64/272 (23%), Gaps = 19/272 (6%)

Query: 4   AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 63
             S +G+ +   G D+   + +L     +   +   ++    +   S      ++   + 
Sbjct: 68  RMSASGRYLLVIGRDARIDMIDLW--AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA 125

Query: 64  TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS----VSISGSNSRMFVSGSCDSTA 119
            +       + D  T     +      +  T          +I  S+       +   T 
Sbjct: 126 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG 185

Query: 120 RLWDTRVASRA--VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 177
           ++             T  G    +    +      F T +++            +L    
Sbjct: 186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV 245

Query: 178 QQHGENEIPH-----------VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL 226
                                V S +    G +   G    +   +       +   G  
Sbjct: 246 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG 305

Query: 227 QNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
               +       L  D +         ++ ++
Sbjct: 306 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVF 337

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 4e-09
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 8/151 (5%)

Query: 37  PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 96
           P    L GH   V  C  +  ED ++IT + D+   ++D               SGH   
Sbjct: 3   PQRTTLRGHMTSVITC--LQFEDNYVITGADDKMIRVYDSINKKFLLQL-----SGHDGG 55

Query: 97  VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 156
           V ++  +     +    +  +       +     V   H        +  + +     TG
Sbjct: 56  VWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 114

Query: 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 187
           S D T  ++ +     +  + ++H    + H
Sbjct: 115 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 145

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 5e-08
 Identities = 25/126 (19%), Positives = 40/126 (31%), Gaps = 9/126 (7%)

Query: 133 TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA 192
           T  GH   V T     + N   TG+DD   R++D      L       G      V ++ 
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG-----VWALK 60

Query: 193 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 252
           ++  G L+                 K         ++   R   +    +   + TGS D
Sbjct: 61  YAHGGILVSGSTDRTVRVWDIK---KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117

Query: 253 TNLKIW 258
             L +W
Sbjct: 118 NTLHVW 123

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 10/80 (12%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 134 FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 193
           F  H  +++ +  F   +       +    ++++R+G  +     +  +     + S+ F
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD----QIWSVNF 332

Query: 194 SISGRLLFAGYSNGDCYVWD 213
                L+ A   +G  ++  
Sbjct: 333 K-GKTLVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 93  HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 152
           H  ++ +++    +  + VSGS ++   +++ R               + +V F      
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-L 337

Query: 153 FGTGSDDGTCRL 164
                 DG   L
Sbjct: 338 VAAVEKDGQSFL 349

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 4e-05
 Identities = 24/258 (9%), Positives = 63/258 (24%), Gaps = 7/258 (2%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           +        + +  G  D+   ++ L   +    +                  +V     
Sbjct: 100 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 159

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
           H+ +           ++     ++   +        +LS       S ++        + 
Sbjct: 160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 219

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
             DT +  R     +G             G    +     +        G     Y ++ 
Sbjct: 220 SMDTTI--RIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF 277

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
             +         F +S  +L +G S     +++    K+V    +       +I  +   
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLV---HANILKDADQIWSVNFK 333

Query: 241 ADGSALCTGSWDTNLKIW 258
                +     D    + 
Sbjct: 334 GKT-LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 7/79 (8%)

Query: 45  HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 104
           H   +S          +++ S  +    ++++ +G                 + SV+  G
Sbjct: 280 HHTNLSAITTFYV-SDNILVSGSENQFNIYNLRSGKLVHAN----ILKDADQIWSVNFKG 334

Query: 105 SNSRMFVSGSCDSTARLWD 123
               +  +   D  + L  
Sbjct: 335 K--TLVAAVEKDGQSFLEI 351

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 53.6 bits (127), Expect = 7e-09
 Identities = 15/171 (8%), Positives = 44/171 (25%), Gaps = 7/171 (4%)

Query: 50  SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 109
                +  +      +   +       +       +  +      + + +++    + + 
Sbjct: 163 PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD 222

Query: 110 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 169
             +          D +      + F        T    P       G  +     +D++ 
Sbjct: 223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQ 281

Query: 170 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 220
              ++     H          +AF   G  L+ G +  D  V++    + V
Sbjct: 282 RKLIKAANLDHT------YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 48.2 bits (113), Expect = 3e-07
 Identities = 20/185 (10%), Positives = 41/185 (22%), Gaps = 10/185 (5%)

Query: 74  WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT 133
                 +R +  G  + +G     + V        + +           D          
Sbjct: 144 PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSP 203

Query: 134 FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 193
            H         +F  D     T          D++TG      +            +   
Sbjct: 204 RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT----ELYFTGLR 259

Query: 194 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 253
           S                 +D    K++        + +    C+     G  L  G    
Sbjct: 260 SPKDPNQ-IYGVLNRLAKYDLKQRKLIKAA-----NLDHTYYCVAFDKKGDKLYLGGTFN 313

Query: 254 NLKIW 258
           +L ++
Sbjct: 314 DLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.4 bits (111), Expect = 6e-07
 Identities = 18/232 (7%), Positives = 38/232 (16%), Gaps = 36/232 (15%)

Query: 59  DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 118
             ++I ++      + D+ +                    +  ++  N   +V  +    
Sbjct: 8   HEYMIVTNYPNNLHVVDVASDTVY----KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 119 ARLWDTRVASRAVRTFHG-----HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 173
               D                      + +    PDG       +               
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 174 QVYYQQ---------HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD----------- 213
              +                   V  +  +  G L  AG       V             
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 214 -------TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
                             S ++      T      D     T          
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 235

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.7 bits (104), Expect = 4e-06
 Identities = 15/132 (11%), Positives = 35/132 (26%), Gaps = 8/132 (6%)

Query: 43  SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 102
                 +       D+     T+      +  D+ TG        +  +  T    +   
Sbjct: 204 RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH----TQEFADLTELYFTGLR 259

Query: 103 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 162
           S  +          +    +D     R +      +     V F   G++   G      
Sbjct: 260 SPKDPNQIYGV--LNRLAKYDL--KQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDL 315

Query: 163 RLFDIRTGHQLQ 174
            +F+  T  +++
Sbjct: 316 AVFNPDTLEKVK 327

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.0 bits (102), Expect = 9e-06
 Identities = 14/117 (11%), Positives = 27/117 (23%), Gaps = 7/117 (5%)

Query: 148 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF-AGYSN 206
                    +      + D+ +    +               +   +   R  +      
Sbjct: 6   AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFG----PGTAMMAPDNRTAYVLNNHY 61

Query: 207 GDCYVWDTLLAKVV--LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261
           GD Y  D    K     NL S+       +    +S DG  +      T      + 
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 1e-07
 Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 7/129 (5%)

Query: 91  SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGD-VNTVKFFP 148
           S        +S   + + +       +  R  D   +    V  F GH    V TVKF P
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 149 --DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH---VTSIAFSISGRLLFAG 203
                   +G + G   ++      +                  ++ I++   GR L   
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133

Query: 204 YSNGDCYVW 212
               D +  
Sbjct: 134 GEGRDNFGV 142

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 32/261 (12%), Positives = 64/261 (24%), Gaps = 12/261 (4%)

Query: 4   AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY-VSCCQYVPDED-TH 61
           ++ PT  ++A     S      +    D D  +P     +GH    V+  ++ P +   +
Sbjct: 24  SYDPTTNAIAYPCGKSAF----VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 62  LITSSGDQTCVLWDITTGLRTSVFGGEF---QSGHTADVLSVSISGSNSRM-FVSGSCDS 117
           L +       ++W  T    ++                +  +S      R+  V    D+
Sbjct: 80  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139

Query: 118 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 177
                     +         +             R  T  DDG+   +            
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199

Query: 178 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 237
             H +     V  + FS           +          +   L                
Sbjct: 200 THHKQGS--FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257

Query: 238 GLSADGSALCTGSWDTNLKIW 258
               D     T   D  +++W
Sbjct: 258 LSWLDSQKFATVGADATIRVW 278

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 6e-07
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 106 NSRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCR 163
           +S+ F +   D+T R+WD   +      T    +     V     GN R  + S DGT  
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 164 LFDI 167
            +++
Sbjct: 322 FYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 8e-07
 Identities = 24/213 (11%), Positives = 63/213 (29%), Gaps = 7/213 (3%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
              ++   G+ +   G         ++  +           +SGH   ++ C        
Sbjct: 119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS-----LGEVSGHSQRINACHLKQSRPM 173

Query: 61  HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
             +T   D + V +       ++      + G     +  S       + V      +  
Sbjct: 174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 233

Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
              +    + +               + D  +F T   D T R++D+ T   +Q  +   
Sbjct: 234 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK-WTLD 292

Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 213
            +        +  + +GR++ +   +G    ++
Sbjct: 293 KQQLGNQQVGVVATGNGRII-SLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 5/76 (6%)

Query: 1   MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
           +        Q  A  G D+   ++++ +             L   +        V   + 
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTT-----SKCVQKWTLDKQQLGNQQVGVVATGNG 309

Query: 61  HLITSSGDQTCVLWDI 76
            +I+ S D T   +++
Sbjct: 310 RIISLSLDGTLNFYEL 325

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 134 FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 193
              H G V  + + PDG +  + S D T +++++ T    +                +  
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR----IEDQQLGI 289

Query: 194 SISGRLLFAGYSNGDCYVWD 213
             + + L +  +NG     +
Sbjct: 290 IWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.6 bits (111), Expect = 6e-07
 Identities = 42/297 (14%), Positives = 82/297 (27%), Gaps = 54/297 (18%)

Query: 4   AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 63
             +P G  +      SV     + S T        + + + H    +  +  P    +  
Sbjct: 24  GNTPAGDKIQYCNGTSV-YTVPVGSLT-------DTEIYTEHSHQTTVAKTSPS-GYYCA 74

Query: 64  TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 123
           +        +WD T             SG   D+   S S   + +           L+D
Sbjct: 75  SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 134

Query: 124 TRVASRAVRTFHGHEGDVNTVKFF------------------------------------ 147
           T  ++  +         V+                                         
Sbjct: 135 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 194

Query: 148 ----PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH--VTSIAFSISGRLLF 201
               PDG+ F +   DGT  L++   G +  V+     +N      V  + +S  G  + 
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 254

Query: 202 AGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
           +  ++    +W+    KV     ++          LG+     AL + S +  +   
Sbjct: 255 SASADKTIKIWNVATLKV---EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.8 bits (109), Expect = 8e-07
 Identities = 9/83 (10%), Positives = 21/83 (25%), Gaps = 3/83 (3%)

Query: 99  SVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
           +V +  +         +  ++        +      +  H       K  P G    +G 
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVPVG-SLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 158 DDGTCRLFDIRTGHQLQVYYQQH 180
             G  R++D      +       
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPV 100

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 14/124 (11%), Positives = 32/124 (25%), Gaps = 2/124 (1%)

Query: 45  HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 104
           H  +V   +Y PD      T       +   +             ++   +  +      
Sbjct: 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247

Query: 105 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV-KFFPDGNRFGTGSDDGTCR 163
            +     S S D T ++W+     +  +T        +             + S +G   
Sbjct: 248 PDGTKIASASADKTIKIWNVA-TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 306

Query: 164 LFDI 167
             + 
Sbjct: 307 FVNP 310

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.7 bits (112), Expect = 6e-07
 Identities = 23/185 (12%), Positives = 35/185 (18%), Gaps = 18/185 (9%)

Query: 90  QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD 149
             G + D          S + +      T   W +          H     ++       
Sbjct: 18  SDGSSCDH-GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLG-HSLGAFLSLAVAGHS 75

Query: 150 G----------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISG 197
           G           R   G       +FD  T   +           +  P V  I    S 
Sbjct: 76  GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135

Query: 198 R-LLFAGYSNGDCYVWDTLLAKVVLNL---GSLQNSHEGRITCLGLSADGSALCTGSWDT 253
             LLF  + +          A                    T    S   S   +     
Sbjct: 136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAA 195

Query: 254 NLKIW 258
                
Sbjct: 196 PAAAG 200

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.5 bits (96), Expect = 6e-05
 Identities = 13/179 (7%), Positives = 38/179 (21%), Gaps = 15/179 (8%)

Query: 4   AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 63
             S      A     +  +   + +      N       + + G +          + L 
Sbjct: 180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML----VWAVASSILQ 235

Query: 64  TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS------GSCDS 117
                    +     G  +      F    +A    V+   +   + +           +
Sbjct: 236 GDIPAAGATMKAAIDGNESGRKADNF---RSAGFQMVAKLKNTDGIMILTVEHSRSCLAA 292

Query: 118 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR--FGTGSDDGTCRLFDIRTGHQLQ 174
                    +         +  D + +    DG    +   +      ++D  +     
Sbjct: 293 AENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 4e-06
 Identities = 16/197 (8%), Positives = 41/197 (20%), Gaps = 15/197 (7%)

Query: 4   AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 63
                G                       +    ++      K                 
Sbjct: 163 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW--PTYTGKIHQ 220

Query: 64  TSSGDQTCVLWDITTGLRTSVFGGEFQSGH------TADVLSVSISGSNSRMFVSGSCDS 117
                           L  +     ++ G          +  + +       +   +   
Sbjct: 221 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR 280

Query: 118 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR--FGTGSDDGTCRLFDIRTGHQLQV 175
              + D    +           +++++    D     +   + D T  + D  +G +L+ 
Sbjct: 281 FVVVLDA--KTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 338

Query: 176 YYQQHGENEIPHVTSIA 192
              Q G    P V + A
Sbjct: 339 -VNQLGHG--PQVITTA 352

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 9e-06
 Identities = 21/183 (11%), Positives = 42/183 (22%), Gaps = 24/183 (13%)

Query: 97  VLSVSISGSNSRMFVS----GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 152
            +  + +    R++V+     +  +   + D   A R +    G  G +       DG+ 
Sbjct: 4   RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGE-AGRVIGMIDG--GFLPNPVVADDGSF 60

Query: 153 F----------GTGSDDGTCRLFDIRTGHQLQVYYQQHGENE--IPHVTSIAFSISGRLL 200
                        G       +FD  T                   +    + +  G+ L
Sbjct: 61  IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTL 120

Query: 201 FAGYSNGDCYVWDTLLA-----KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL 255
                +    V    L      +++              T      DGS           
Sbjct: 121 LFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 180

Query: 256 KIW 258
              
Sbjct: 181 PEI 183

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 6/101 (5%)

Query: 50  SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 109
                + D+       +  +  V+ D  TG R + F      GH  D ++VS       +
Sbjct: 261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDE-KPLL 315

Query: 110 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 150
           +   + D T  + D   +   +R+ +        +     G
Sbjct: 316 YALSTGDKTLYIHDAE-SGEELRSVNQLGHGPQVITTADMG 355

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 9e-05
 Identities = 12/106 (11%), Positives = 30/106 (28%), Gaps = 4/106 (3%)

Query: 109 MFVSGSCDSTARLWDT-RVASRAVRTFHGHEGDVNTVKFFPDGNR-FGTGSDDGTCRLFD 166
           ++++        +W+     +  +       G V  +   PD    +     +     + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 212
           I        +  +        +T I+    G+ +F G  N      
Sbjct: 66  IAPDDGALTFAAES--ALPGSLTHISTDHQGQFVFVGSYNAGNVSV 109

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 8/82 (9%), Positives = 23/82 (28%), Gaps = 3/82 (3%)

Query: 107 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR-FGTGSDDGTCRLF 165
           +  +++ S      + D   +++   T              PDG + +   +      + 
Sbjct: 2   TFAYIANSESDNISVIDVT-SNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSII 59

Query: 166 DIRTGHQLQVYYQQHGENEIPH 187
           D  T + +           +  
Sbjct: 60  DTATNNVIATVPAGSSPQGVAV 81

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 63  ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 122
           I +S      + D+T+   T+           ++ +   IS   ++++V+ +  +   + 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVG------SNPMGAVISPDGTKVYVANAHSNDVSII 59

Query: 123 DT 124
           DT
Sbjct: 60  DT 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.75
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.59
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.54
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.54
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.39
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.24
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.2
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.18
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.15
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.11
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.11
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.09
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.08
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.07
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.06
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.02
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.87
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.79
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.78
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.78
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.68
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.43
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.34
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.21
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.93
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.84
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.74
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.64
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.14
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.13
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.8
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.64
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.33
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.1
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.78
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.7
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.55
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.18
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.07
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.92
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.74
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.06
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.8
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.3
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	89.79
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	86.47
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	86.44
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	86.43
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	86.22
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	83.0
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	81.82

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.9e-39  Score=257.67  Aligned_cols=241  Identities=39%  Similarity=0.752  Sum_probs=196.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-   80 (267)
                      +++|+|++++|+||+.||+|++||+...       .....+.+|...|.+++|+|++ .++++|+.|+.+++|+..... 
T Consensus        60 ~l~~s~~~~~l~sgs~Dg~v~iWd~~~~-------~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i~~~~~~~~~~  131 (340)
T d1tbga_          60 AMHWGTDSRLLVSASQDGKLIIWDSYTT-------NKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREG  131 (340)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTT-------EEEEEEECSCSCEEEEEECTTS-SEEEEEETTCCEEEEESSSSCS
T ss_pred             EEEECCCCCEEEEEECCCceeeeecccc-------eeEEEEecccccEEeeEeeccc-eeeeeecccceeeccccccccc
Confidence            6899999999999999999999998652       2456778999999999999975 589999999999999976431 


Q ss_pred             ---eEEEeCCc------------------------------------cccCCccceEEEEEeCCCCeEEEEecCCCeEEE
Q 024451           81 ---RTSVFGGE------------------------------------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARL  121 (267)
Q Consensus        81 ---~~~~~~~~------------------------------------~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~i  121 (267)
                         ....+...                                    ....+...+....+.+ ...++++++.|+.|++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i  210 (340)
T d1tbga_         132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKL  210 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTTEEEE
T ss_pred             ccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccc-ccceeEEeecCceEEE
Confidence               11111000                                    0012344455555553 5667899999999999


Q ss_pred             EeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451          122 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF  201 (267)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  201 (267)
                      ||++. ......+.+|...|.+++|+|++++|++++.|+.|++||++..+....+..   ......+.+++|+|++++|+
T Consensus       211 ~d~~~-~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~  286 (340)
T d1tbga_         211 WDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLL  286 (340)
T ss_dssp             EETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECSSSCEEE
T ss_pred             EECCC-CcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc---ccccCceEEEEECCCCCEEE
Confidence            99975 456778889999999999999999999999999999999998776554322   23345699999999999999


Q ss_pred             EEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          202 AGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       202 ~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      +|+.||.|++||+...+.+..+    ..|.++|++++|+|++++|++||.||.|+||+
T Consensus       287 ~g~~dg~i~iwd~~~~~~~~~~----~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         287 AGYDDFNCNVWDALKADRAGVL----AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTSCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999888776655    46899999999999999999999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-38  Score=254.74  Aligned_cols=245  Identities=18%  Similarity=0.237  Sum_probs=195.1

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC--CCeEEEEeCCCC
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG--DQTCVLWDITTG   79 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--d~~v~iwd~~~~   79 (267)
                      +++|+|+|++|++|+.||+|++||+....     ......+.+|+.+|.+++|+|++ .++++++.  +..+++|+++++
T Consensus        63 ~~~~sp~g~~latg~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~  136 (311)
T d1nr0a1          63 VAKTSPSGYYCASGDVHGNVRIWDTTQTT-----HILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTG  136 (311)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEESSSTT-----CCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTC
T ss_pred             EEEEeCCCCeEeccccCceEeeeeeeccc-----cccccccccccCccccccccccc-cccccccccccccccccccccc
Confidence            67899999999999999999999987532     12334578899999999999976 46777765  466999999987


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD  159 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  159 (267)
                      .....+     .+|...|.+++|+|.+..++++|+.|+.|++||++. .+....+.+|...|.++.|+|+++++++++.|
T Consensus       137 ~~~~~l-----~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~-~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d  210 (311)
T d1nr0a1         137 TSNGNL-----TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD  210 (311)
T ss_dssp             CBCBCC-----CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccc-----cccccccccccccccceeeecccccccccccccccc-cccccccccccccccccccCcccccccccccc
Confidence            655443     468889999999986666788999999999999975 44567778899999999999999999999999


Q ss_pred             CcEEEEeCCCCeeeEEEEeec--CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL  237 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  237 (267)
                      +.+++||.++++....+....  ...+...|.+++|+|++++|++|+.||.|++||..+++.+..+.. ...+...+.++
T Consensus       211 ~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~-~~~~~~~~~~~  289 (311)
T d1nr0a1         211 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-GTRIEDQQLGI  289 (311)
T ss_dssp             SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSGGGCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEEC-CCCccceEEEE
Confidence            999999999877655432211  112345799999999999999999999999999988877654421 11223345555


Q ss_pred             EECCCCCeEEEeECCCcEEEEecC
Q 024451          238 GLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       238 ~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .|  ++++|++++.||.|++|++.
T Consensus       290 ~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         290 IW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EE--CSSCEEEEETTCCEEEEETT
T ss_pred             Ee--cCCEEEEEECCCEEEEEeCC
Confidence            55  45689999999999999863

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-37  Score=249.00  Aligned_cols=243  Identities=16%  Similarity=0.221  Sum_probs=196.1

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .++++|+|+.|+.+. ++.+.+|++....       ....+.+|...|++++|+|++ ++|++|+.|++|++||+.++..
T Consensus        22 ~~a~~~~g~~l~~~~-~~~v~i~~~~~~~-------~~~~~~~H~~~v~~~~~sp~g-~~latg~~dg~i~iwd~~~~~~   92 (311)
T d1nr0a1          22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLT-------DTEIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTH   92 (311)
T ss_dssp             CCEECTTSSEEEEEE-TTEEEEEETTCSS-------CCEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTC
T ss_pred             EEEEcCCCCEEEEEe-CCEEEEEECCCCc-------eeEEEcCCCCCEEEEEEeCCC-CeEeccccCceEeeeeeecccc
Confidence            578999999999875 6679999986532       445678999999999999975 6899999999999999987653


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecC--CCeEEEEeCCCcccceEEeeccccceeEEEEecCCCE-EEEeeC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC--DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR-FGTGSD  158 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~  158 (267)
                      ....   ....|...|.+++|++. ++++++++.  +..+++|+.+.. +....+.+|...|.+++|+|++++ +++|+.
T Consensus        93 ~~~~---~~~~~~~~v~~v~~s~d-~~~l~~~~~~~~~~~~v~~~~~~-~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~  167 (311)
T d1nr0a1          93 ILKT---TIPVFSGPVKDISWDSE-SKRIAAVGEGRERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPFRIISGSD  167 (311)
T ss_dssp             CEEE---EEECSSSCEEEEEECTT-SCEEEEEECCSSCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSSSCEEEEEET
T ss_pred             cccc---ccccccCcccccccccc-ccccccccccccccccccccccc-cccccccccccccccccccccceeeeccccc
Confidence            3221   11468889999999974 556667664  456999998753 456678889999999999999875 888999


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccc---ccCCccceEE
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS---LQNSHEGRIT  235 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~v~  235 (267)
                      |+.|++||+++++......     .+...|.++.|+|+++++++|+.||.+++||....+....+..   ....|.+.|.
T Consensus       168 d~~i~i~d~~~~~~~~~~~-----~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~  242 (311)
T d1nr0a1         168 DNTVAIFEGPPFKFKSTFG-----EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF  242 (311)
T ss_dssp             TSCEEEEETTTBEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred             ccccccccccccccccccc-----cccccccccccCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999877654432     2234699999999999999999999999999887665543321   1236889999


Q ss_pred             EEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          236 CLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       236 ~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      +++|+|++++|++|+.||.|+||++...
T Consensus       243 ~~~~s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         243 GLTWSPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            9999999999999999999999997543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-37  Score=250.20  Aligned_cols=234  Identities=20%  Similarity=0.391  Sum_probs=197.3

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++++.|++|++||+....     ......+.+|...+.++.|+|++ .++++++.|+.|++|++.++..
T Consensus       102 ~v~~s~dg~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~  175 (337)
T d1gxra_         102 SCKLLPDGCTLIVGGEASTLSIWDLAAPT-----PRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTL  175 (337)
T ss_dssp             EEEECTTSSEEEEEESSSEEEEEECCCC-------EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEcCCCCEEEEeecccccccccccccc-----ccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence            68999999999999999999999986532     12445677899999999999965 5899999999999999998876


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ....     .+|...+.++++++ ++..+++++.|+.+++||++.. +.+..+ .|...|.+++|+|+++++++++.|+.
T Consensus       176 ~~~~-----~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~-~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~  247 (337)
T d1gxra_         176 VRQF-----QGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREG-RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSN  247 (337)
T ss_dssp             EEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT-EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccc-----cccccccccccccc-cccccccccccccccccccccc-eeeccc-ccccceEEEEEcccccccceeccccc
Confidence            5544     36788899999986 4567889999999999999753 334444 57889999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      +++||+++++....      ..+...|.+++|+|++++|++|+.||.|++||....+.+...     .|.+.|.+++|+|
T Consensus       248 i~i~d~~~~~~~~~------~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-----~~~~~v~~~~~s~  316 (337)
T d1gxra_         248 VEVLHVNKPDKYQL------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISV  316 (337)
T ss_dssp             EEEEETTSSCEEEE------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----ECSSCEEEEEECT
T ss_pred             cccccccccccccc------cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-----cCCCCEEEEEEeC
Confidence            99999988765432      123356999999999999999999999999999888776543     4778999999999


Q ss_pred             CCCeEEEeECCCcEEEEec
Q 024451          242 DGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~  260 (267)
                      ++++|++|+.||+|+||++
T Consensus       317 d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         317 DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEEE
Confidence            9999999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-37  Score=246.31  Aligned_cols=241  Identities=23%  Similarity=0.415  Sum_probs=191.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCC-----------------C------------------CCCcccccccCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDK-----------------D------------------GNLPVSRMLSGHK   46 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~-----------------~------------------~~~~~~~~~~~h~   46 (267)
                      +++|+|++++|+||+.||+|++||+......                 .                  ........+.+|.
T Consensus        22 ~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (317)
T d1vyhc1          22 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD  101 (317)
T ss_dssp             EEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccccccccc
Confidence            6889999999999999999999998642100                 0                  0001122234455


Q ss_pred             eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC
Q 024451           47 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV  126 (267)
Q Consensus        47 ~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~  126 (267)
                      ..+.++.++|++ ..+++++.|+.+++||++++.....+     .+|...+.++.+++ ++.++++++.|+.|++|+...
T Consensus       102 ~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~  174 (317)
T d1vyhc1         102 HNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTF-----TGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVAT  174 (317)
T ss_dssp             SCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT
T ss_pred             ccceeeeccCCC-ceEEeeccCcceeEeecccceeeeEE-----ccCCCcceeeeccc-CCCEEEEEeCCCeEEEEeecc
Confidence            555556666544 46888999999999999888766555     35778889999986 467889999999999999875


Q ss_pred             cccceEEeeccccceeEEEEecCC--------------------CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCC
Q 024451          127 ASRAVRTFHGHEGDVNTVKFFPDG--------------------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP  186 (267)
Q Consensus       127 ~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  186 (267)
                       ......+.+|...+.++.|+|++                    ..+++++.|+.|++||+++++.+..+..     +..
T Consensus       175 -~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-----~~~  248 (317)
T d1vyhc1         175 -KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-----HDN  248 (317)
T ss_dssp             -CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC-----CSS
T ss_pred             -ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC-----CCC
Confidence             44567778888889999887654                    4688999999999999999887665532     234


Q ss_pred             cEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      .|.+++|+|++++|++|+.||.|++||+...+.+..+    ..|.++|++++|+|++++|++|+.||+|+||+
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL----NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE----ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            6999999999999999999999999999887766554    46899999999999999999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-37  Score=248.92  Aligned_cols=242  Identities=21%  Similarity=0.339  Sum_probs=198.1

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++|+ ||.|++||+.......  ........+|.+.|.+++|+|++ ++|++|+.|++|++||+.....
T Consensus        56 ~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~--~~~~~~~~~h~~~I~~v~~s~dg-~~l~s~~~dg~i~iwd~~~~~~  131 (337)
T d1gxra_          56 AVTISNPTRHVYTGG-KGCVKVWDISHPGNKS--PVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTP  131 (337)
T ss_dssp             EEEECSSSSEEEEEC-BSEEEEEETTSTTCCS--CSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--
T ss_pred             EEEECCCCCEEEEEE-CCEEEEEEccCCcccc--eeEEeeecCCCCcEEEEEEcCCC-CEEEEeeccccccccccccccc
Confidence            679999999999987 8999999987643221  11223456899999999999976 5899999999999999875433


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                      ....   ....|...+..+.+++ +..++++++.|+.+++|+++. ........+|...+.+++|+++++.+++++.|+.
T Consensus       132 ~~~~---~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~-~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~  206 (337)
T d1gxra_         132 RIKA---ELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT  206 (337)
T ss_dssp             EEEE---EEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cccc---cccccccccccccccc-ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            2221   1135788899999986 567889999999999999875 4456677789999999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      +++||+++++.+..+.      ....|.+++|+|+++++++|+.||.+++||....+....     ..|...|.+++|+|
T Consensus       207 v~i~d~~~~~~~~~~~------~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-----~~~~~~i~~v~~s~  275 (337)
T d1gxra_         207 VRSWDLREGRQLQQHD------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-----HLHESCVLSLKFAY  275 (337)
T ss_dssp             EEEEETTTTEEEEEEE------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-----CCCSSCEEEEEECT
T ss_pred             ccccccccceeecccc------cccceEEEEEcccccccceeccccccccccccccccccc-----cccccccceEEECC
Confidence            9999999887665432      224689999999999999999999999999987765432     46888999999999


Q ss_pred             CCCeEEEeECCCcEEEEecCce
Q 024451          242 DGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      ++++|++|+.||.|++|+....
T Consensus       276 ~g~~l~s~s~Dg~i~iwd~~~~  297 (337)
T d1gxra_         276 CGKWFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTC
T ss_pred             CCCEEEEEeCCCeEEEEECCCC
Confidence            9999999999999999997543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.8e-38  Score=258.12  Aligned_cols=242  Identities=15%  Similarity=0.205  Sum_probs=193.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      |++|+|+|++|++++.|+.|++||....     .......+++|.++|.+++|+|++ ++|++|+.|++|++||+.++..
T Consensus        12 ~~~~s~dg~~la~~~~~~~i~iw~~~~~-----~~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_          12 CHAWNKDRTQIAICPNNHEVHIYEKSGN-----KWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             EEEECTTSSEEEEECSSSEEEEEEEETT-----EEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCC-----CEEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEeeccccc
Confidence            7899999999999999999999998642     123456788999999999999976 5899999999999999987754


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc---eEEeeccccceeEEEEecCCCEEEEeeC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNRFGTGSD  158 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~  158 (267)
                      ...+.   ..+|...+.+++|+| +++.+++++.|+.+++|+.......   ......|...|.+++|+|++++|++|+.
T Consensus        86 ~~~~~---~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~  161 (371)
T d1k8kc_          86 KPTLV---ILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  161 (371)
T ss_dssp             EEEEE---CCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             ccccc---ccccccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecccc
Confidence            44332   235788899999996 4678899999999999987643321   2334578889999999999999999999


Q ss_pred             CCcEEEEeCCCCeeeE---------------EEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451          159 DGTCRLFDIRTGHQLQ---------------VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  223 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~---------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  223 (267)
                      |+++++||........               ...  ....+...+.+++|+|++++|++++.||.|++||....+.+..+
T Consensus       162 D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~  239 (371)
T d1k8kc_         162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF--ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL  239 (371)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE--ECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             CcEEEEEeeccCccccccccccccccccceeeee--eccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee
Confidence            9999999986532110               111  11234457899999999999999999999999999887766554


Q ss_pred             ccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          224 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       224 ~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                          ..|..+|.+++|+|++++|++|+ |+.+++|.+
T Consensus       240 ----~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~  271 (371)
T d1k8kc_         240 ----ASETLPLLAVTFITESSLVAAGH-DCFPVLFTY  271 (371)
T ss_dssp             ----ECSSCCEEEEEEEETTEEEEEET-TSSCEEEEE
T ss_pred             ----ecccccceeeeecCCCCEEEEEc-CCceEEEEe
Confidence                45888999999999999888654 788888764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-36  Score=247.18  Aligned_cols=241  Identities=24%  Similarity=0.455  Sum_probs=189.7

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|++|++|+.||+|++|+....       .......+|...|.++.+++++ ..+++++.++.+++||..+...
T Consensus       126 ~l~~s~~~~~l~s~~~dg~v~i~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~  197 (388)
T d1erja_         126 SVCFSPDGKFLATGAEDRLIRIWDIENR-------KIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQC  197 (388)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE
T ss_pred             EEEECCCCCcceeccccccccccccccc-------cccccccccccccccccccccc-ccccccccceeeeeeecccccc
Confidence            5789999999999999999999997642       2455678899999999999965 5789999999999999998765


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc------eEEeeccccceeEEEEecCCCEEEE
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA------VRTFHGHEGDVNTVKFFPDGNRFGT  155 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~  155 (267)
                      ....      .+.....++.+.+.++.++++++.|+.|++|+.+.....      .....+|...|.+++|+|++++|++
T Consensus       198 ~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  271 (388)
T d1erja_         198 SLTL------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  271 (388)
T ss_dssp             EEEE------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             cccc------ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEE
Confidence            5443      234456677788778889999999999999998754321      1123468889999999999999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEEee-------cCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccC
Q 024451          156 GSDDGTCRLFDIRTGHQLQVYYQQ-------HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN  228 (267)
Q Consensus       156 ~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~  228 (267)
                      ++.|+.|++||+++++........       ....+...+.+++|+|++++|++|+.||.|++||+.+++.+..+    .
T Consensus       272 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l----~  347 (388)
T d1erja_         272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML----Q  347 (388)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE----E
T ss_pred             EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE----e
Confidence            999999999999875433211100       00123356899999999999999999999999999988877655    4


Q ss_pred             CccceEEEEEE------CCCCCeEEEeECCCcEEEEec
Q 024451          229 SHEGRITCLGL------SADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       229 ~~~~~v~~~~~------~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      .|.+.|.++++      +|++++||+||.||+|+||++
T Consensus       348 ~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             CCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence            68999999874      678999999999999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-34  Score=236.01  Aligned_cols=253  Identities=22%  Similarity=0.349  Sum_probs=186.0

Q ss_pred             CceeeCCCCCeEEEccCCCeEEEeecCCCCCC-----------CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC
Q 024451            1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK-----------DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ   69 (267)
Q Consensus         1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~-----------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~   69 (267)
                      .|++|+|+|++|++|+ |++|++||+......           ...........+|...|++++|+|++ .+|++|+.|+
T Consensus        66 ~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~~l~s~~~dg  143 (388)
T d1erja_          66 CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDR  143 (388)
T ss_dssp             CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS-SEEEEEETTS
T ss_pred             EEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCC-Ccceeccccc
Confidence            3789999999999987 899999998653200           00000112345788899999999975 6899999999


Q ss_pred             eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-
Q 024451           70 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-  148 (267)
Q Consensus        70 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-  148 (267)
                      .|++||..++......     .+|...|.++.+++ ....+++++.++.+++||.+... .......+ ....++.+.+ 
T Consensus       144 ~v~i~~~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~-~~~~~~~~~~~  215 (388)
T d1erja_         144 LIRIWDIENRKIVMIL-----QGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQ-CSLTLSIE-DGVTTVAVSPG  215 (388)
T ss_dssp             CEEEEETTTTEEEEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTE-EEEEEECS-SCEEEEEECST
T ss_pred             cccccccccccccccc-----cccccccccccccc-ccccccccccceeeeeeeccccc-cccccccc-cccccccccCC
Confidence            9999999988766654     46888999999986 45678899999999999987533 33334433 4455555554 


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeec--CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec---
Q 024451          149 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL---  223 (267)
Q Consensus       149 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---  223 (267)
                      ++++|++++.|+.|++||.+++.....+....  ...+...|.+++|+|++++|++|+.||.|++||+...+.....   
T Consensus       216 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  295 (388)
T d1erja_         216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  295 (388)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence            78999999999999999999887655442211  1223457999999999999999999999999998654432111   


Q ss_pred             -----ccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          224 -----GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       224 -----~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                           ......|...|.+++|+|++++|++|+.||.|++|++...
T Consensus       296 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~  340 (388)
T d1erja_         296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  340 (388)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             cccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence                 0112357889999999999999999999999999997543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.2e-34  Score=226.12  Aligned_cols=238  Identities=16%  Similarity=0.225  Sum_probs=182.0

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +++|+|+|++|+||+.||+|++||+....       ..+.+ .+|...|++++|+|++  .+++++.|+.+++|+.....
T Consensus        17 ~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~-------~~~~~~~~h~~~v~~v~~~~~g--~~~~~~~d~~v~~~~~~~~~   87 (299)
T d1nr0a2          17 ALSSSADGKTLFSADAEGHINSWDISTGI-------SNRVFPDVHATMITGIKTTSKG--DLFTVSWDDHLKVVPAGGSG   87 (299)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCC-------EEECSSCSCSSCEEEEEECTTS--CEEEEETTTEEEEECSSSSS
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCc-------EEEEEcCCCCCcEEEEEeeccc--eeecccceeeEEEeccCCcc
Confidence            68999999999999999999999986532       23333 5799999999999975  36788899999999986532


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      ....  ......+...+..+.+++. ++++ +++.++.+++|+...   .....  ....+.+++|+|+++++++++.|+
T Consensus        88 ~~~~--~~~~~~~~~~~~~~~~s~~-g~~~-~~~~~~~i~~~~~~~---~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg  158 (299)
T d1nr0a2          88 VDSS--KAVANKLSSQPLGLAVSAD-GDIA-VAACYKHIAIYSHGK---LTEVP--ISYNSSCVALSNDKQFVAVGGQDS  158 (299)
T ss_dssp             SCTT--SCCEEECSSCEEEEEECTT-SSCE-EEEESSEEEEEETTE---EEEEE--CSSCEEEEEECTTSCEEEEEETTS
T ss_pred             cccc--ccccccccccccccccccc-cccc-ccccccccccccccc---ccccc--cccccccccccccccccccccccc
Confidence            1110  0112345667888888864 4444 455667899998542   22222  234578899999999999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      .|++||+++++........+    ...|.+++|+|++.++++++.||.|++||............+ ..|..+|.+++|+
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~s  233 (299)
T d1nr0a2         159 KVHVYKLSGASVSEVKTIVH----PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW-TFHTAKVACVSWS  233 (299)
T ss_dssp             EEEEEEEETTEEEEEEEEEC----SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC-CCCSSCEEEEEEC
T ss_pred             cccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            99999998776543322222    346999999999999999999999999998776554433222 4688999999999


Q ss_pred             CCCCeEEEeECCCcEEEEecCc
Q 024451          241 ADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       241 p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      |++++|++|+.||.|++|++..
T Consensus       234 ~~~~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         234 PDNVRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             TTSSEEEEEETTSCEEEEETTC
T ss_pred             ccccceEEEcCCCEEEEEECCC
Confidence            9999999999999999999753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5e-34  Score=233.51  Aligned_cols=247  Identities=19%  Similarity=0.288  Sum_probs=186.9

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++++|++++.|++|++||+....     ......+.+|...|+++.|+|++ +.+++++.|+++++|+++....
T Consensus        56 ~l~fsp~~~~l~s~s~D~~i~vWd~~~~~-----~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~  129 (371)
T d1k8kc_          56 GVDWAPDSNRIVTCGTDRNAYVWTLKGRT-----WKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQEND  129 (371)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEEETTE-----EEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTT
T ss_pred             EEEECCCCCEEEEEECCCeEEEEeecccc-----ccccccccccccccccccccccc-ccceeecccCcceeeeeecccc
Confidence            57899999999999999999999986422     12334567899999999999975 5899999999999999876543


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc-----------------cceEEeeccccceeEE
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-----------------RAVRTFHGHEGDVNTV  144 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-----------------~~~~~~~~~~~~i~~~  144 (267)
                      ..... ....+|...|.+++|+| +++++++++.|+.+++|+.....                 .......+|...|.++
T Consensus       130 ~~~~~-~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  207 (371)
T d1k8kc_         130 WWVCK-HIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV  207 (371)
T ss_dssp             EEEEE-EECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE
T ss_pred             ccccc-ccccccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEE
Confidence            32221 12346888999999986 56788999999999999975321                 1234456788899999


Q ss_pred             EEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC--Cccceee-
Q 024451          145 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT--LLAKVVL-  221 (267)
Q Consensus       145 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~--~~~~~~~-  221 (267)
                      +|+|+++++++++.|+.|++||+.+++.+..+..     +..+|.+++|+|+++++++|+ |+.+++|..  ...+... 
T Consensus       208 ~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~  281 (371)
T d1k8kc_         208 CFSANGSRVAWVSHDSTVCLADADKKMAVATLAS-----ETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFG  281 (371)
T ss_dssp             EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-----SSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEEC
T ss_pred             EeecccccccccccCCcceEEeeecccceeeeec-----ccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEe
Confidence            9999999999999999999999998877665532     234699999999998888765 676666542  2111100 


Q ss_pred             ----------------------------------ecccccCCccceEEEEEECCCC----CeEEEeECCCcEEEEecCc
Q 024451          222 ----------------------------------NLGSLQNSHEGRITCLGLSADG----SALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       222 ----------------------------------~~~~~~~~~~~~v~~~~~~p~~----~~l~sgs~dg~i~~w~~~~  262 (267)
                                                        ........|...|.++++.|.+    ..|+|+|.||.|+||++..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         282 GRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             eeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                                              0001122488899999997754    3589999999999999754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-33  Score=222.66  Aligned_cols=239  Identities=25%  Similarity=0.400  Sum_probs=181.5

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS   83 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~   83 (267)
                      +++++|++|+|||.||+|++||+...       .+.+.+.+|.+.|.++.|+|+   +|++++.|+++++|+........
T Consensus        22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~-------~~~~~~~~h~~~V~~v~~~~~---~l~s~s~D~~~~~~~~~~~~~~~   91 (342)
T d2ovrb2          22 CLQFCGNRIVSGSDDNTLKVWSAVTG-------KCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWNAETGECIH   91 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTC-------CEEEECCCCSSCEEEEEEETT---EEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCCC-------CEEEEEeCCCCCEEEEEeCCC---ccccceeccccccccccccccee
Confidence            58889999999999999999998642       256788999999999999873   79999999999999886542211


Q ss_pred             EeCC---------------------------------------------------------------------------c
Q 024451           84 VFGG---------------------------------------------------------------------------E   88 (267)
Q Consensus        84 ~~~~---------------------------------------------------------------------------~   88 (267)
                      ....                                                                           .
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  171 (342)
T d2ovrb2          92 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH  171 (342)
T ss_dssp             EECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred             cccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeE
Confidence            1000                                                                           0


Q ss_pred             cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCC
Q 024451           89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR  168 (267)
Q Consensus        89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~  168 (267)
                      ...+|...+....+   ++.++++++.||.|++||++. ...+..+.+|...+.++.+++  +++++++.|+.|++||+.
T Consensus       172 ~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~  245 (342)
T d2ovrb2         172 TLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIK  245 (342)
T ss_dssp             EECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETT
T ss_pred             EEcCcccccccccC---CCCEEEEEeCCCeEEEeeccc-ceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecc
Confidence            00123333333333   345789999999999999875 446777888998898887764  699999999999999998


Q ss_pred             CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccc-cCCccceEEEEEECCCCCeEE
Q 024451          169 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL-QNSHEGRITCLGLSADGSALC  247 (267)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~  247 (267)
                      ..+....+...  ..+...+.++.+  +++++++|+.||.|++||+++++.+..+... ...|.+.|++++|+|++.+||
T Consensus       246 ~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la  321 (342)
T d2ovrb2         246 TGQCLQTLQGP--NKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA  321 (342)
T ss_dssp             TCCEEEEECST--TSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred             ccccccccccc--ceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEE
Confidence            87765544322  223345666655  4579999999999999999988876654322 235788999999999999999


Q ss_pred             EeECCCc----EEEEecCc
Q 024451          248 TGSWDTN----LKIWAFGG  262 (267)
Q Consensus       248 sgs~dg~----i~~w~~~~  262 (267)
                      +|+.||+    |++|||+-
T Consensus       322 ~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         322 VGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EECSSSSSCCEEEEEECCC
T ss_pred             EEeCCCCCeeEEEEEeCCC
Confidence            9999986    99999863

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-33  Score=224.89  Aligned_cols=249  Identities=18%  Similarity=0.208  Sum_probs=180.3

Q ss_pred             ceeeCC--CCCeEEEccCCCeEEEeecCCCCCCC-CCCcccccccCCeeeEEEEEEecCCCeeEEEee--CCCeEEEEeC
Q 024451            2 TCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKD-GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDI   76 (267)
Q Consensus         2 ~~~~~~--~g~~l~~~~~d~~v~~w~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~d~~v~iwd~   76 (267)
                      +++|+|  +|.+|++|+.||+|++||+....... ........+..|.++|.++.|+|++. ++++++  .++.+++|+.
T Consensus        68 ~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~~~~~~~~~~~~  146 (325)
T d1pgua1          68 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISW  146 (325)
T ss_dssp             EEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEET
T ss_pred             EEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC-ccceeeccccceEEEEee
Confidence            578987  66899999999999999986422110 01112234567889999999999765 555544  4778999999


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce--EEeeccccceeEEEEecC-CCEE
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV--RTFHGHEGDVNTVKFFPD-GNRF  153 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~~~-~~~l  153 (267)
                      +++.....+     .+|...+.++.|++....++++++.|+.+++||.+......  ....+|...|.+++|+|+ ++++
T Consensus       147 ~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l  221 (325)
T d1pgua1         147 DSGNSLGEV-----SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFV  221 (325)
T ss_dssp             TTCCEEEEC-----CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEE
T ss_pred             cccccceee-----eecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceec
Confidence            988766655     46889999999998777778899999999999986433222  223467788999999996 6889


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccce
Q 024451          154 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR  233 (267)
Q Consensus       154 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  233 (267)
                      ++++.|+.|++||+++++.+..+.. +.......+.++.| +++++|++++.|+.|+|||++.++.+..+..  ..|...
T Consensus       222 ~s~~~d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~~~~~~  297 (325)
T d1pgua1         222 ITVGSDRKISCFDGKSGEFLKYIED-DQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTL--DKQQLG  297 (325)
T ss_dssp             EEEETTCCEEEEETTTCCEEEECCB-TTBCCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEEC--CTTCGG
T ss_pred             cccccccceeeeeeccccccccccc-cccccccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEe--cCCccc
Confidence            9999999999999998887655432 22212222344443 6889999999999999999988877655422  123222


Q ss_pred             EEEEEECCC-CCeEEEeECCCcEEEEec
Q 024451          234 ITCLGLSAD-GSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       234 v~~~~~~p~-~~~l~sgs~dg~i~~w~~  260 (267)
                      +..+++.+. +.+|++||.||+|++|++
T Consensus       298 ~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         298 NQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            333333332 357899999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.7e-32  Score=216.63  Aligned_cols=252  Identities=14%  Similarity=0.171  Sum_probs=183.7

Q ss_pred             ceeeCCCCCeEEEccCCC-eEEEeecCCCCCCCCCCcccccccCC-eeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCC
Q 024451            2 TCAFSPTGQSVACGGLDS-VCSIFNLNSPTDKDGNLPVSRMLSGH-KGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITT   78 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~-~v~~w~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~   78 (267)
                      +++|+|+|+.|+.++.+. .++.|+....     ..+....+.+| ...|++++|+|. ++++|++|+.||+|+|||+..
T Consensus        22 ~l~~~~~~~~la~~~~~~~~i~~~~~~~~-----~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          22 HLSYDPTTNAIAYPCGKSAFVRCLDDGDS-----KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             CCEEETTTTEEEEEETTEEEEEECCSSCC-----SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEEeCCCC-----CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            578999999999876554 4566764332     12344566787 467999999985 447899999999999999865


Q ss_pred             CeeEEEeC---CccccCCccceEEEEEeCCCCeEEEEe--cCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCE-
Q 024451           79 GLRTSVFG---GEFQSGHTADVLSVSISGSNSRMFVSG--SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR-  152 (267)
Q Consensus        79 ~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-  152 (267)
                      +.....+.   ......|...|.+++|++.+ +.++++  +.++.+++|+... ...+..+.+|...|.+++|+|++++ 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~  174 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDS-GNSLGEVSGHSQRINACHLKQSRPMR  174 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTT-CCEEEECCSCSSCEEEEEECSSSSCE
T ss_pred             CcceeeeecccccccccccCcEEEEEECCCC-CccceeeccccceEEEEeecc-cccceeeeecccccccccccccccce
Confidence            42211110   01113577889999999754 445444  3577899999864 4467778899999999999998875 


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC-CCEEEEEEeCCeEEEEeCCccceeeecccccCCcc
Q 024451          153 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE  231 (267)
Q Consensus       153 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~  231 (267)
                      +++++.|+.+++||....+.......  ...+...|.+++|+|+ +.++++++.||.|++||.++.+.+..+......+.
T Consensus       175 ~~~~~~d~~v~~~d~~~~~~~~~~~~--~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~  252 (325)
T d1pgua1         175 SMTVGDDGSVVFYQGPPFKFSASDRT--HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ  252 (325)
T ss_dssp             EEEEETTTEEEEEETTTBEEEEEECS--SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC
T ss_pred             EEEeecccccccccccccccceeccc--ccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccc
Confidence            67899999999999987665443322  2234457999999996 68899999999999999988877665532222333


Q ss_pred             ceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          232 GRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       232 ~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      +.+.++++ |+|++|++++.|+.|+||++...
T Consensus       253 ~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         253 GGIFALSW-LDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             SCEEEEEE-SSSSEEEEEETTSEEEEEETTTT
T ss_pred             cceeeeec-cCCCEEEEEeCCCeEEEEECCCC
Confidence            44555555 68999999999999999997643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-32  Score=211.01  Aligned_cols=231  Identities=29%  Similarity=0.442  Sum_probs=172.4

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS   83 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~   83 (267)
                      |++++|++|+||+.||+|++||+...       .+.+++.+|++.|++++|.+   .+|++|+.|+.|++|++..+....
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~-------~~~~~l~~H~~~V~~v~~~~---~~l~s~s~D~~i~~~~~~~~~~~~   89 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTL-------ECKRILTGHTGSVLCLQYDE---RVIITGSSDSTVRVWDVNTGEMLN   89 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSC-------CEEEEECCCSSCEEEEECCS---SEEEEEETTSCEEEEESSSCCEEE
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCC-------cEEEEEecCCCCEeeeeccc---ceeecccccccccccccccccccc
Confidence            47789999999999999999998642       36678899999999998843   589999999999999998764332


Q ss_pred             EeCCc--------------------------------------cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC
Q 024451           84 VFGGE--------------------------------------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR  125 (267)
Q Consensus        84 ~~~~~--------------------------------------~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~  125 (267)
                      .....                                      ....|...+....+.+   ..+++++.|+.+++||.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~  166 (293)
T d1p22a2          90 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTS  166 (293)
T ss_dssp             EECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETT
T ss_pred             cccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc---cccccccCCCceeeecCC
Confidence            21100                                      0123455555555543   356788999999999997


Q ss_pred             CcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe
Q 024451          126 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  205 (267)
Q Consensus       126 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~  205 (267)
                      . .+.+..+.+|...+..+.++  +.++++++.|++|++||+++.+.+.....     ....+.  .+++++.+|++|+.
T Consensus       167 ~-~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~--~~~~~~~~l~sg~~  236 (293)
T d1p22a2         167 T-CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG-----HEELVR--CIRFDNKRIVSGAY  236 (293)
T ss_dssp             T-CCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECC-----CSSCEE--EEECCSSEEEEEET
T ss_pred             C-CcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecc-----cceeee--eccccceEEEEEcC
Confidence            5 34567788888888777765  56899999999999999998776654322     122344  35678899999999


Q ss_pred             CCeEEEEeCCccceeeec-----ccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          206 NGDCYVWDTLLAKVVLNL-----GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       206 dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                      ||.|++||+.........     ......|.++|++++|+  +++|++||.||+|+|||
T Consensus       237 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            999999996543221110     01124689999999985  57899999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.6e-31  Score=209.98  Aligned_cols=214  Identities=21%  Similarity=0.387  Sum_probs=173.1

Q ss_pred             CcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC
Q 024451           36 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC  115 (267)
Q Consensus        36 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~  115 (267)
                      +...++++||++.|++++|+|++ .+|++|+.||+|+|||+.++.....+     ..|...|.+++|+| ++.++++++.
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~~~~~~~~-----~~~~~~v~~v~~~~-~~~~l~~~~~  117 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAI-----PLRSSWVMTCAYAP-SGNYVACGGL  117 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEE-----ECSCSCEEEEEECT-TSSEEEEEET
T ss_pred             eeeeEEECCCCCCEEEEEECCCC-CEEEEEECCCceeeeecccceeEEEE-----ecccccEEeeEeec-cceeeeeecc
Confidence            44667899999999999999975 58999999999999999998877665     35888999999986 5678899999


Q ss_pred             CCeEEEEeCCCccc---c-----------------------------------------eEEeeccccceeEEEEecCCC
Q 024451          116 DSTARLWDTRVASR---A-----------------------------------------VRTFHGHEGDVNTVKFFPDGN  151 (267)
Q Consensus       116 d~~i~iwd~~~~~~---~-----------------------------------------~~~~~~~~~~i~~~~~~~~~~  151 (267)
                      |+.+++|+......   .                                         ......+...+....+.+...
T Consensus       118 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (340)
T d1tbga_         118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR  197 (340)
T ss_dssp             TCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             cceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccc
Confidence            99999998643210   0                                         011122344566777788889


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCcc
Q 024451          152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE  231 (267)
Q Consensus       152 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~  231 (267)
                      ++++++.|+.|++||+++++.+..+..     +...|.+++|+|++++|++|+.||.+++||....+.......  ..+.
T Consensus       198 ~~~~~~~d~~v~i~d~~~~~~~~~~~~-----h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~--~~~~  270 (340)
T d1tbga_         198 LFVSGACDASAKLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH--DNII  270 (340)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--TTCC
T ss_pred             eeEEeecCceEEEEECCCCcEEEEEeC-----CCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc--cccc
Confidence            999999999999999999887655432     335799999999999999999999999999987765544322  3566


Q ss_pred             ceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          232 GRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       232 ~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      ..|.+++|+|++++|++|+.||.|++|++...
T Consensus       271 ~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~  302 (340)
T d1tbga_         271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             SCEEEEEECSSSCEEEEEETTSCEEEEETTTC
T ss_pred             CceEEEEECCCCCEEEEEECCCEEEEEECCCC
Confidence            78999999999999999999999999997543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-31  Score=219.08  Aligned_cols=252  Identities=18%  Similarity=0.211  Sum_probs=171.4

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccc--cccCCeeeEEEE------EEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR--MLSGHKGYVSCC------QYVPDEDTHLITSSGDQTCVLWDITTG   79 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~--~~~~h~~~v~~~------~~~~~~~~~l~s~~~d~~v~iwd~~~~   79 (267)
                      .+++++|+|.|++|++||......   ..+...  ....|+..+..+      ...+....++++++.|+.|++|++...
T Consensus        23 ~~~~l~S~S~D~~iriWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~   99 (393)
T d1sq9a_          23 CNSFTVSCSGDGYLKVWDNKLLDN---ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE   99 (393)
T ss_dssp             CSSEEEEEETTSEEEEEESBCCTT---CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEEC
T ss_pred             eCCEEEEEECCCeEEEEECCCCCC---CcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCC
Confidence            457999999999999999764321   112211  122343333222      222222346789999999999987543


Q ss_pred             eeE-----EEeCCccccCCccceEEEEEeCCC----CeEEEEecCCCeEEEEeCCCccc-----------------ceEE
Q 024451           80 LRT-----SVFGGEFQSGHTADVLSVSISGSN----SRMFVSGSCDSTARLWDTRVASR-----------------AVRT  133 (267)
Q Consensus        80 ~~~-----~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~s~~~d~~i~iwd~~~~~~-----------------~~~~  133 (267)
                      ...     ..........+...+..+.+.+..    ..++++++.||.+++|++.....                 ....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (393)
T d1sq9a_         100 DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES  179 (393)
T ss_dssp             TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECC
T ss_pred             CceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceec
Confidence            211     111111112244556666666432    46788999999999999742210                 0111


Q ss_pred             eeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeec-CCCCCCcEEEEEEccCCCEEEEEEeCC---eE
Q 024451          134 FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-GENEIPHVTSIAFSISGRLLFAGYSNG---DC  209 (267)
Q Consensus       134 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~g~~dg---~i  209 (267)
                      ...+...+.+++|+|++ ++++|+.|++|++||+++++.+..+.... ...+..+|.+++|+|++++|++|+.|+   .+
T Consensus       180 ~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i  258 (393)
T d1sq9a_         180 PMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI  258 (393)
T ss_dssp             SSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEE
T ss_pred             ccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCccee
Confidence            12344568899999987 89999999999999999988765543321 223456899999999999999999886   59


Q ss_pred             EEEeCCccceeeecc---------cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          210 YVWDTLLAKVVLNLG---------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       210 ~i~d~~~~~~~~~~~---------~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      ++||++.++.+..+.         ....+|.+.|++++|+|++++|+|||.|++|+||++...
T Consensus       259 ~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         259 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             EEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             eecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence            999998766554332         112469999999999999999999999999999997543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.8e-32  Score=215.71  Aligned_cols=253  Identities=11%  Similarity=0.116  Sum_probs=177.3

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|++++|++|+.||+|++||+.....    ........+|..+|.+++|+|+++.+|++|+.|++|++|+......
T Consensus        16 ~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~----~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~   91 (342)
T d1yfqa_          16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAK----NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEEEETTTT----EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred             EEEEeCCCCEEEEEECCCeEEEEEccCCCc----ceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccc
Confidence            689999999999999999999999865321    1122333479999999999998777899999999999999987655


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce---EEeecc--ccceeEEEEecCCCEEEEe
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV---RTFHGH--EGDVNTVKFFPDGNRFGTG  156 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~---~~~~~~--~~~i~~~~~~~~~~~l~~~  156 (267)
                      .....     .+........+...+...+++++.|+.+++||++......   .....+  ........+.+.++.++++
T Consensus        92 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (342)
T d1yfqa_          92 FQALT-----NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG  166 (342)
T ss_dssp             EEECB-----SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEE
T ss_pred             ccccc-----ccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeee
Confidence            44432     1222222222233355678999999999999976432211   112222  2234566777888999999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEE-EccCCCEEEEEEeCCeEEEEeCCccceeee-----------cc
Q 024451          157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA-FSISGRLLFAGYSNGDCYVWDTLLAKVVLN-----------LG  224 (267)
Q Consensus       157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~-----------~~  224 (267)
                      +.|+.|++||++..+..........  ......+.. +..++..+++++.||.+.+|+.........           ..
T Consensus       167 ~~d~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
T d1yfqa_         167 MNNSQVQWFRLPLCEDDNGTIEESG--LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN  244 (342)
T ss_dssp             ESTTEEEEEESSCCTTCCCEEEECS--CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred             cCCCcEEEEecccCcccceeeeecc--cccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec
Confidence            9999999999987654432222211  112344444 455678999999999999998653321110           01


Q ss_pred             cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceEe
Q 024451          225 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR  265 (267)
Q Consensus       225 ~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~  265 (267)
                      .....|...+++++|+|++++||+|+.||.|++|++...++
T Consensus       245 ~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~  285 (342)
T d1yfqa_         245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK  285 (342)
T ss_dssp             TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred             cCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcE
Confidence            11235677899999999999999999999999999876554

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.5e-31  Score=207.04  Aligned_cols=214  Identities=26%  Similarity=0.406  Sum_probs=172.1

Q ss_pred             ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc-----------------------------
Q 024451           38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE-----------------------------   88 (267)
Q Consensus        38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-----------------------------   88 (267)
                      ....++||++.|++++|+|++ ++|+||+.|++|+|||++++.....+...                             
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             ccEEEcCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence            345789999999999999975 58999999999999999887655444210                             


Q ss_pred             --------cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           89 --------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        89 --------~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                              ...+|...+.++.+++ ++..+++++.|+.+++||++.. .....+.+|...+.++.|+|+++++++++.|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  165 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTG-YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ  165 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccceeeeccC-CCceEEeeccCcceeEeecccc-eeeeEEccCCCcceeeecccCCCEEEEEeCCC
Confidence                    0124556666676765 3456889999999999998754 46677888999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC--------------------CCEEEEEEeCCeEEEEeCCcccee
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS--------------------GRLLFAGYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~g~~dg~i~i~d~~~~~~~  220 (267)
                      .|++|++.+++....+..     +...+.++.|+|+                    +.++++|+.||.|++||...++.+
T Consensus       166 ~v~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  240 (317)
T d1vyhc1         166 TVRVWVVATKECKAELRE-----HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL  240 (317)
T ss_dssp             CEEEEETTTCCEEEEECC-----CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred             eEEEEeeccceeeEEEec-----CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE
Confidence            999999998776554422     2235677777664                    457999999999999999888776


Q ss_pred             eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          221 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      ..+    ..|...|.+++|+|++++|++|+.||.|++|++...
T Consensus       241 ~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         241 MTL----VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             EEE----ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             EEE----eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence            654    468889999999999999999999999999997543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.4e-31  Score=210.44  Aligned_cols=236  Identities=24%  Similarity=0.357  Sum_probs=180.4

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS   83 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~   83 (267)
                      +++++|++|+||+.||+|++||+...       .+...+.+|++.|++++|+|+  .+|++|+.|++|++|+........
T Consensus        18 c~~~~~~~l~tgs~Dg~i~vWd~~~~-------~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~i~iw~~~~~~~~~   88 (355)
T d1nexb2          18 CLQFEDNYVITGADDKMIRVYDSINK-------KFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTVRVWDIKKGCCTH   88 (355)
T ss_dssp             EEEEETTEEEEEETTTEEEEEETTTT-------EEEEEEECCSSCEEEEEEETT--TEEEEEETTCCEEEEETTTTEEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCCC-------cEEEEEECCCCCEEEEEEcCC--CEEEEEeccccccccccccccccc
Confidence            47778999999999999999998642       366788999999999999984  479999999999999999876655


Q ss_pred             EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc----------------------eEEeeccccce
Q 024451           84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA----------------------VRTFHGHEGDV  141 (267)
Q Consensus        84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~----------------------~~~~~~~~~~i  141 (267)
                      ....   ..+........+. ++.+.+++++.|+.|++||++.....                      ......|...+
T Consensus        89 ~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  164 (355)
T d1nexb2          89 VFEG---HNSTVRCLDIVEY-KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV  164 (355)
T ss_dssp             EECC---CSSCEEEEEEEEE-TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE
T ss_pred             cccc---ccccccccccccc-cccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccc
Confidence            4432   1223333444444 45678899999999999998643211                      11112222223


Q ss_pred             eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee
Q 024451          142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL  221 (267)
Q Consensus       142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~  221 (267)
                        ..+.+++++++++..|+.+++||+++++.+.....     ....+.++.|++++..+++++.|+.|++||...+..+.
T Consensus       165 --~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  237 (355)
T d1nexb2         165 --RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-----HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY  237 (355)
T ss_dssp             --EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             --cccccccceeeeecccceeeeeecccccceeeeec-----cccccccccccccceeeecccccceEEeeecccccccc
Confidence              34456788999999999999999998876544322     23457899999999999999999999999998877665


Q ss_pred             ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceEe
Q 024451          222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR  265 (267)
Q Consensus       222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~  265 (267)
                      .+    ..|...|.+++++|  ++|++|+.||.|++|++....+
T Consensus       238 ~~----~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~  275 (355)
T d1nexb2         238 TL----QGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR  275 (355)
T ss_dssp             EE----CCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCE
T ss_pred             cc----cccccccccccccc--ceeeeeecccccccccccccce
Confidence            54    46889999999875  7999999999999999876544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.3e-31  Score=207.20  Aligned_cols=238  Identities=11%  Similarity=0.108  Sum_probs=173.1

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +++|+|+|+ +++++.|+.+++|+.......    ........|...+.++.|+|++. ++ +++.++.+++|+..... 
T Consensus        60 ~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~g~-~~-~~~~~~~i~~~~~~~~~-  131 (299)
T d1nr0a2          60 GIKTTSKGD-LFTVSWDDHLKVVPAGGSGVD----SSKAVANKLSSQPLGLAVSADGD-IA-VAACYKHIAIYSHGKLT-  131 (299)
T ss_dssp             EEEECTTSC-EEEEETTTEEEEECSSSSSSC----TTSCCEEECSSCEEEEEECTTSS-CE-EEEESSEEEEEETTEEE-
T ss_pred             EEEeeccce-eecccceeeEEEeccCCcccc----ccccccccccccccccccccccc-cc-ccccccccccccccccc-
Confidence            578999997 556677999999997643211    12233456777889999999753 44 45566789999965322 


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT  161 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  161 (267)
                       ...       ....+.++++++ +++++++++.|+.|++||++...........|...|.+++|+|+++++++++.|+.
T Consensus       132 -~~~-------~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  202 (299)
T d1nr0a2         132 -EVP-------ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK  202 (299)
T ss_dssp             -EEE-------CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             -ccc-------cccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             111       223456788875 56788999999999999986443222344578899999999999999999999999


Q ss_pred             EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451          162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      |++||+.++.......  ....+...|.+++|+|++++|++|+.||.|++||+.......... ....+...+.++.+ |
T Consensus       203 i~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~-~  278 (299)
T d1nr0a2         203 VIPYSVANNFELAHTN--SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII-KGAHAMSSVNSVIW-L  278 (299)
T ss_dssp             EEEEEGGGTTEESCCC--CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE-TTSSTTSCEEEEEE-E
T ss_pred             cccccccccccccccc--cccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEE-ecCCCCCcEEEEEE-C
Confidence            9999998765443221  112234579999999999999999999999999987654322111 11234556777755 5


Q ss_pred             CCCeEEEeECCCcEEEEec
Q 024451          242 DGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       242 ~~~~l~sgs~dg~i~~w~~  260 (267)
                      ++++|++||.||+|++|++
T Consensus       279 ~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         279 NETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             ETTEEEEEETTSCEEEEEC
T ss_pred             CCCEEEEEeCCCEEEEEec
Confidence            6789999999999999986

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-31  Score=211.11  Aligned_cols=230  Identities=13%  Similarity=0.168  Sum_probs=163.8

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-   80 (267)
                      +++|+|    |+||+.||+|++||+..            ...+|+..|.++.+.+.  ..+++++.|+++++|++.+.. 
T Consensus        18 ~l~~s~----l~sgs~Dg~v~~Wd~~~------------~~~~h~~~V~~~~~~~~--~~~~s~s~D~~v~~w~~~~~~~   79 (287)
T d1pgua2          18 ALTVNP----LISGSYDGRIMEWSSSS------------MHQDHSNLIVSLDNSKA--QEYSSISWDDTLKVNGITKHEF   79 (287)
T ss_dssp             EEETTT----TEEEETTSCEEETTTTE------------EECCCCSCEEEEECCST--TCCEEEETTTEEEETTEEEEEC
T ss_pred             EEEECc----EEEEeCCCeEEEEECCC------------CCCCCCCCEEEEEecCC--CeEEEEeecccccccccccccc
Confidence            567777    99999999999999753            13579999999999874  358999999999999875321 


Q ss_pred             ----eEEEeCC------------------c---c--ccCCccceEEEEEeCCCCeEEEEecC-CCeEEEEeCCCcccceE
Q 024451           81 ----RTSVFGG------------------E---F--QSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVR  132 (267)
Q Consensus        81 ----~~~~~~~------------------~---~--~~~~~~~i~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~~~  132 (267)
                          ....+..                  .   .  ...+...+.  ++.+... .+++++. ++.+++|++........
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~v~~~~~~~v~~~~~~~~~~~~~  156 (287)
T d1pgua2          80 GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS--AVSLSQN-YVAVGLEEGNTIQVFKLSDLEVSFD  156 (287)
T ss_dssp             SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE--EEEECSS-EEEEEETTTSCEEEEETTEEEEEEE
T ss_pred             ccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceee--eeeccCc-ceeeeccccceeeeeeccccceeee
Confidence                0000000                  0   0  001112222  2333333 4455554 45799999864333233


Q ss_pred             EeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC----------CCEEEE
Q 024451          133 TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS----------GRLLFA  202 (267)
Q Consensus       133 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----------~~~l~~  202 (267)
                      ....|...+.+++|+|++++|++++.|+.|++||+.+++.....+    ..+...|.+++|+|.          +.++++
T Consensus       157 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~----~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~s  232 (287)
T d1pgua2         157 LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW----AFRTSKINAISWKPAEKGANEEEIEEDLVAT  232 (287)
T ss_dssp             CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS----CCCSSCEEEEEECCCC------CCSCCEEEE
T ss_pred             eeeccCCceeEEEeccCccccccccccccccceeecccccccccc----cccccccceeeecccccccccccCCCCeeEe
Confidence            334577889999999999999999999999999998876543211    233457999999874          468999


Q ss_pred             EEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451          203 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       203 g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                      |+.|+.|++||++.......   ....|.+.|.+++|+|++ .|++++.||.|++|++
T Consensus       233 gs~D~~i~iw~~~~~~~~~~---~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         233 GSLDTNIFIYSVKRPMKIIK---ALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EETTSCEEEEESSCTTCCEE---ETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ecCCCeEEEEECCCCCeEEE---EeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            99999999999876443222   225799999999999986 5889999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-28  Score=202.49  Aligned_cols=250  Identities=14%  Similarity=0.163  Sum_probs=171.5

Q ss_pred             CCeEEEccCCCeEEEeecCCCCCCCCCCc---ccccccCCeeeEEEEEEecCC----CeeEEEeeCCCeEEEEeCCCCee
Q 024451            9 GQSVACGGLDSVCSIFNLNSPTDKDGNLP---VSRMLSGHKGYVSCCQYVPDE----DTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~----~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      +.++++++.||++++|++...........   .......+...++.+.+.++.    ..++++++.|+++++|++.....
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            45788999999999999765322111000   011123455667778887643    36789999999999999853210


Q ss_pred             -------------EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-----eEEeeccccceeE
Q 024451           82 -------------TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-----VRTFHGHEGDVNT  143 (267)
Q Consensus        82 -------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~i~~  143 (267)
                                   ...........+...+.++++++.  .++++|+.|+.|++||+......     ...+.+|...|.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d--g~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~  236 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  236 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--SEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCC--CEEEEEeCCCcEEEEeecccccccccccccccccccceEEE
Confidence                         000001112345566888999864  37899999999999998753321     1234578999999


Q ss_pred             EEEecCCCEEEEeeCCCc---EEEEeCCCCeeeEEEEeec--------CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEE
Q 024451          144 VKFFPDGNRFGTGSDDGT---CRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVW  212 (267)
Q Consensus       144 ~~~~~~~~~l~~~~~d~~---i~iwd~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~  212 (267)
                      ++|+|++++|++|+.|++   |++||+++++.+..+....        ...+...|.+++|+|++++|++|+.|+.|++|
T Consensus       237 l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  316 (393)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             cccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEE
Confidence            999999999999999875   9999999987766543211        12345679999999999999999999999999


Q ss_pred             eCCccceeeecccc-------------c----CCccceEEEEEECCCC----------CeEEEeECCCcEEEEec
Q 024451          213 DTLLAKVVLNLGSL-------------Q----NSHEGRITCLGLSADG----------SALCTGSWDTNLKIWAF  260 (267)
Q Consensus       213 d~~~~~~~~~~~~~-------------~----~~~~~~v~~~~~~p~~----------~~l~sgs~dg~i~~w~~  260 (267)
                      |+.+++.+..+..-             .    ....+.+.++.|.|.+          +.|++++.|+.|++|.-
T Consensus       317 d~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         317 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             ECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence            99888766543110             0    0012346677776543          45888999999999963

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.1e-27  Score=188.36  Aligned_cols=233  Identities=18%  Similarity=0.256  Sum_probs=171.3

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCC----------------CCCcccccccCCeeeEEEEEEecCCCeeEEEee
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKD----------------GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS   66 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~   66 (267)
                      +.+.+++..+++++.|+++++|++.......                ...........|...+.+...  + +.+++++.
T Consensus       102 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~-~~~~~~~~  178 (355)
T d1nexb2         102 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--H-GNIVVSGS  178 (355)
T ss_dssp             EEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEE--E-TTEEEEEE
T ss_pred             cccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccc--c-cceeeeec
Confidence            4567889999999999999999986532110                001112223345555554443  2 35789999


Q ss_pred             CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEE
Q 024451           67 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF  146 (267)
Q Consensus        67 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~  146 (267)
                      .|+.|++||+.++.......     ++...+.++.+++. ...+++++.|+.|++||.+. ......+.+|...|.++.+
T Consensus       179 ~d~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~  251 (355)
T d1nexb2         179 YDNTLIVWDVAQMKCLYILS-----GHTDRIYSTIYDHE-RKRCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLRL  251 (355)
T ss_dssp             TTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCCCEEEE
T ss_pred             ccceeeeeecccccceeeee-----cccccccccccccc-ceeeecccccceEEeeeccc-ccccccccccccccccccc
Confidence            99999999999887665543     45667788888864 56788999999999999875 4467788899999999998


Q ss_pred             ecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEE-EEEccCCCEEEEEEeCCeEEEEeCCccceeeeccc
Q 024451          147 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS-IAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS  225 (267)
Q Consensus       147 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  225 (267)
                      ++  +++++++.||.|++||+++......  .++.     .+.+ ..+++++.++++| .||.|++||+++++.+...  
T Consensus       252 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~--  319 (355)
T d1nexb2         252 SD--KFLVSAAADGSIRGWDANDYSRKFS--YHHT-----NLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHAN--  319 (355)
T ss_dssp             CS--SEEEEECTTSEEEEEETTTCCEEEE--EECT-----TCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSC--
T ss_pred             cc--ceeeeeecccccccccccccceecc--cccC-----CceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEE--
Confidence            64  6999999999999999987654332  2221     1233 3567777777766 5899999999888765432  


Q ss_pred             ccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451          226 LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       226 ~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~  259 (267)
                       ...|.++|.+++|+|+ .++++++.||++.||.
T Consensus       320 -~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         320 -ILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             -TTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             -ecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence             2468899999999986 5788899999977764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-25  Score=179.51  Aligned_cols=203  Identities=24%  Similarity=0.469  Sum_probs=149.9

Q ss_pred             ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451           38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  117 (267)
Q Consensus        38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~  117 (267)
                      ..+.++||++.|.++ +++++ ++|+||+.|++|+|||+.+++....+     .+|...|.++++++   .++++++.|+
T Consensus         8 ~~~~l~GH~~~V~s~-~~~~g-~~l~sgs~Dg~i~vWd~~~~~~~~~~-----~~h~~~V~~v~~~~---~~l~s~s~D~   77 (342)
T d2ovrb2           8 SPKVLKGHDDHVITC-LQFCG-NRIVSGSDDNTLKVWSAVTGKCLRTL-----VGHTGGVWSSQMRD---NIIISGSTDR   77 (342)
T ss_dssp             CCEEEECSTTSCEEE-EEEET-TEEEEEETTSCEEEEETTTCCEEEEC-----CCCSSCEEEEEEET---TEEEEEETTS
T ss_pred             cCEEECCcCCceEEE-EEECC-CEEEEEeCCCeEEEEECCCCCEEEEE-----eCCCCCEEEEEeCC---Cccccceecc
Confidence            556789999988542 44444 58999999999999999998877665     46889999999985   2788999999


Q ss_pred             eEEEEeCCCccc--------------------------------------------------------------------
Q 024451          118 TARLWDTRVASR--------------------------------------------------------------------  129 (267)
Q Consensus       118 ~i~iwd~~~~~~--------------------------------------------------------------------  129 (267)
                      .+++|+......                                                                    
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            999998642100                                                                    


Q ss_pred             -----------ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC
Q 024451          130 -----------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR  198 (267)
Q Consensus       130 -----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  198 (267)
                                 ....+.+|..  ....+.++++++++++.|+.|++||++.++.+..+..     +...+.+++++  ++
T Consensus       158 ~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~-----~~~~v~~~~~~--~~  228 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQGHTN--RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG-----HQSLTSGMELK--DN  228 (342)
T ss_dssp             CEEEEEGGGTEEEEEECCCSS--CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC-----CCSCEEEEEEE--TT
T ss_pred             eEEEeecccceeeEEEcCccc--ccccccCCCCEEEEEeCCCeEEEeecccceeeeEecc-----cccceeEEecC--CC
Confidence                       0011122222  2334456788999999999999999998876654432     22356776655  56


Q ss_pred             EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          199 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       199 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      ++++|+.||.|++||....+....+.. ...|...+.++.++|  +++++|+.||.|++|++..
T Consensus       229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKTGQCLQTLQG-PNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECS-TTSCSSCEEEEEECS--SEEEEEETTSEEEEEETTT
T ss_pred             EEEEEcCCCEEEEEecccccccccccc-cceeeeceeecccCC--CeeEEEcCCCEEEEEECCC
Confidence            999999999999999887665544432 245777888887764  6999999999999999853

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=3.4e-26  Score=184.61  Aligned_cols=187  Identities=13%  Similarity=0.089  Sum_probs=145.7

Q ss_pred             eeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC--CeEEEEeCCCC
Q 024451            3 CAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTG   79 (267)
Q Consensus         3 ~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--~~v~iwd~~~~   79 (267)
                      -.||| ||+++++++ +|.|.+||+...       +..+  .+|...|.+++|+|++. +|++++.+  ..|++||.+++
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~-------~~~~--~~~~~~v~~~~~spDg~-~l~~~~~~~g~~v~v~d~~~~   76 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGT-------YVLK--VPEPLRIRYVRRGGDTK-VAFIHGTREGDFLGIYDYRTG   76 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSS-------BEEE--CSCCSCEEEEEECSSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred             ccccCCCCCEEEEEE-CCeEEEEECCCC-------cEEE--ccCCCCEEEEEECCCCC-EEEEEEcCCCCEEEEEECCCC
Confidence            35999 999999876 568999998542       1222  26999999999999764 56655544  37999999987


Q ss_pred             eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEe---
Q 024451           80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG---  156 (267)
Q Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---  156 (267)
                      .....      ..|...+..++|+| +++++++++.++.+++|+... ......+..|...+.+++|+|+|++|+.+   
T Consensus        77 ~~~~~------~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~  148 (360)
T d1k32a3          77 KAEKF------EENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLET-GKPTVIERSREAMITDFTISDNSRFIAYGFPL  148 (360)
T ss_dssp             CEEEC------CCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             cEEEe------eCCCceEEeeeecc-cccccceeccccccccccccc-cceeeeeecccccccchhhccceeeeeeeccc
Confidence            65433      35888899999996 567889999999999999874 44566677788889999999999999854   


Q ss_pred             -------eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451          157 -------SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT  214 (267)
Q Consensus       157 -------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~  214 (267)
                             ..++.+++||..+++....      ......+..++|+|+|+.|+.++.++.+.+||.
T Consensus       149 ~~~~~~~~~~~~~~v~d~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         149 KHGETDGYVMQAIHVYDMEGRKIFAA------TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             CSSTTCSCCEEEEEEEETTTTEEEEC------SCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             cccceeeccccceeeeccccCceeee------cccccccccccccCCCCEEEEEeCCCceEcccc
Confidence                   3455799999988754322      122345788899999999999999999999975

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.9e-27  Score=187.02  Aligned_cols=201  Identities=19%  Similarity=0.218  Sum_probs=149.2

Q ss_pred             cccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC
Q 024451           37 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD  116 (267)
Q Consensus        37 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d  116 (267)
                      ++.+++.||+.+|++++|+|     |+||+.||+|++||+.++.          .+|...|.++.+.+  +..+++++.|
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~----------~~h~~~V~~~~~~~--~~~~~s~s~D   66 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH----------QDHSNLIVSLDNSK--AQEYSSISWD   66 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE----------CCCCSCEEEEECCS--TTCCEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC----------CCCCCCEEEEEecC--CCeEEEEeec
Confidence            35678999999999999976     8999999999999987532          36888899998864  3457899999


Q ss_pred             CeEEEEeCCCccc----------------------ceEEeecccc--------ceeEEEEecCCCEEEEeeCCC-cEEEE
Q 024451          117 STARLWDTRVASR----------------------AVRTFHGHEG--------DVNTVKFFPDGNRFGTGSDDG-TCRLF  165 (267)
Q Consensus       117 ~~i~iwd~~~~~~----------------------~~~~~~~~~~--------~i~~~~~~~~~~~l~~~~~d~-~i~iw  165 (267)
                      +++++|+......                      .+..+.....        ......++|+++.+++++.|+ .+++|
T Consensus        67 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~  146 (287)
T d1pgua2          67 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVF  146 (287)
T ss_dssp             TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEE
T ss_pred             cccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeee
Confidence            9999997642100                      0000111110        112345677888888887764 79999


Q ss_pred             eCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC---
Q 024451          166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD---  242 (267)
Q Consensus       166 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---  242 (267)
                      ++...+.....    .......+.+++|+|++.+|++|+.||.|++||....+.....   ...|..+|.+++|+|+   
T Consensus       147 ~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---~~~h~~~v~~~~~~p~~~~  219 (287)
T d1pgua2         147 KLSDLEVSFDL----KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR---WAFRTSKINAISWKPAEKG  219 (287)
T ss_dssp             ETTEEEEEEEC----SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC---SCCCSSCEEEEEECCCC--
T ss_pred             eccccceeeee----eeccCCceeEEEeccCccccccccccccccceeeccccccccc---ccccccccceeeecccccc
Confidence            98754433221    1223456999999999999999999999999999877654332   2468899999999875   


Q ss_pred             -------CCeEEEeECCCcEEEEecC
Q 024451          243 -------GSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       243 -------~~~l~sgs~dg~i~~w~~~  261 (267)
                             +.+|++|+.|+.|++|++.
T Consensus       220 ~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         220 ANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             ----CCSCCEEEEEETTSCEEEEESS
T ss_pred             cccccCCCCeeEeecCCCeEEEEECC
Confidence                   4689999999999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.2e-25  Score=177.47  Aligned_cols=221  Identities=11%  Similarity=0.052  Sum_probs=158.1

Q ss_pred             ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451           38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS  117 (267)
Q Consensus        38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~  117 (267)
                      +....++|+..|++++|+|++ .+|++|+.|++|+|||++++.....+.  ...+|...|.+++|++.+..++++|+.|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~~~~~~~~--~~~~h~~~V~~v~f~~~~~~~l~sg~~d~   79 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLL--QSLRYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEEEEE--EEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             eEEcCCCCCCCEEEEEEeCCC-CEEEEEECCCeEEEEEccCCCcceEEE--EecCCCCCEEEEEEeCCCCCEEEEccccc
Confidence            455678999999999999975 589999999999999997654322221  11358899999999987778899999999


Q ss_pred             eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC-CCCCCcEEEEEEccC
Q 024451          118 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-ENEIPHVTSIAFSIS  196 (267)
Q Consensus       118 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~  196 (267)
                      .|++|+.............+........+.++...+++++.|+.+++||++............. ...........+.+.
T Consensus        80 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
T d1yfqa_          80 EILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             ceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence            9999998754433332223333445556677888999999999999999876544333222211 112223456677888


Q ss_pred             CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC-CCCCeEEEeECCCcEEEEecCc
Q 024451          197 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS-ADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       197 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +..+++++.||.+++||+...+........ ..+...+.+.++. +++..+++++.||.+.+|.+..
T Consensus       160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~  225 (342)
T d1yfqa_         160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             CCceeeecCCCcEEEEecccCcccceeeee-cccccceeeeEeecCCCCEEEeecCCCeEEEEEecC
Confidence            999999999999999998765443222111 2233345555554 5678999999999999998754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.6e-24  Score=165.54  Aligned_cols=196  Identities=27%  Similarity=0.499  Sum_probs=147.8

Q ss_pred             cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451           39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST  118 (267)
Q Consensus        39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~  118 (267)
                      .....+|...|+|++|  + +++|+||+.|++|+|||+++++....+     .+|...|.++.++   ++++++++.|+.
T Consensus         8 i~~~~~~~~~V~c~~~--d-~~~l~sgs~Dg~i~vWd~~~~~~~~~l-----~~H~~~V~~v~~~---~~~l~s~s~D~~   76 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDKNTLECKRIL-----TGHTGSVLCLQYD---ERVIITGSSDST   76 (293)
T ss_dssp             EECCCSSCCCEEEEEC--C-SSEEEEEESSSCEEEEESSSCCEEEEE-----CCCSSCEEEEECC---SSEEEEEETTSC
T ss_pred             EeccCCCCCCEEEEEE--c-CCEEEEEeCCCeEEEEECCCCcEEEEE-----ecCCCCEeeeecc---cceeeccccccc
Confidence            3445678899999876  3 358999999999999999998877776     3699999998874   468999999999


Q ss_pred             EEEEeCCCcccc------------------------------------------eEEeeccccceeEEEEecCCCEEEEe
Q 024451          119 ARLWDTRVASRA------------------------------------------VRTFHGHEGDVNTVKFFPDGNRFGTG  156 (267)
Q Consensus       119 i~iwd~~~~~~~------------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~  156 (267)
                      |++|++......                                          ...+..|...+....+.  ...++++
T Consensus        77 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~  154 (293)
T d1p22a2          77 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSA  154 (293)
T ss_dssp             EEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccc
Confidence            999997532110                                          11223344555555544  4578899


Q ss_pred             eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451          157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC  236 (267)
Q Consensus       157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  236 (267)
                      +.|+.+++||.++++.+..+..     ....+..+.+  ++.++++++.||.|++||.+..+.+...    ..|...+..
T Consensus       155 s~d~~i~~~d~~~~~~~~~~~~-----~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~v~~  223 (293)
T d1p22a2         155 SGDRTIKVWNTSTCEFVRTLNG-----HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL----EGHEELVRC  223 (293)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE----CCCSSCEEE
T ss_pred             cCCCceeeecCCCCcEEEEEcc-----cccccccccC--CCCeEEEecCCCEEEEEecccceeeeee----cccceeeee
Confidence            9999999999998877655432     1234666655  4578999999999999999887766544    356666665


Q ss_pred             EEECCCCCeEEEeECCCcEEEEec
Q 024451          237 LGLSADGSALCTGSWDTNLKIWAF  260 (267)
Q Consensus       237 ~~~~p~~~~l~sgs~dg~i~~w~~  260 (267)
                        +++++.+|++|+.||.|++|++
T Consensus       224 --~~~~~~~l~sg~~dg~i~iwd~  245 (293)
T d1p22a2         224 --IRFDNKRIVSGAYDGKIKVWDL  245 (293)
T ss_dssp             --EECCSSEEEEEETTSCEEEEEH
T ss_pred             --ccccceEEEEEcCCCEEEEEEC
Confidence              4577899999999999999986

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.2e-22  Score=168.48  Aligned_cols=261  Identities=10%  Similarity=-0.002  Sum_probs=171.4

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .++|+|||++|++++.|+++++||+......  .....+...+|.+.+.++.|+|++..+++++..++.+++||..++..
T Consensus        66 ~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~--~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~  143 (426)
T d1hzua2          66 ISRMSASGRYLLVIGRDARIDMIDLWAKEPT--KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  143 (426)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCE--EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEccCCcee--EEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce
Confidence            4789999999999999999999998753210  01112344578888899999998875566777899999999998866


Q ss_pred             EEEeCCcc------ccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEE
Q 024451           82 TSVFGGEF------QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT  155 (267)
Q Consensus        82 ~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  155 (267)
                      ........      ...+......+..++....++.+....+.+.+++............++...+..+.|+|+++++++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  223 (426)
T d1hzua2         144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT  223 (426)
T ss_dssp             EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEE
T ss_pred             eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEe
Confidence            55443211      011223334444454444444444445566666554322222233456777899999999998776


Q ss_pred             ee-CCCcEEEEeCCCCeeeEEEEeec------------------------C-------------------------CCCC
Q 024451          156 GS-DDGTCRLFDIRTGHQLQVYYQQH------------------------G-------------------------ENEI  185 (267)
Q Consensus       156 ~~-~d~~i~iwd~~~~~~~~~~~~~~------------------------~-------------------------~~~~  185 (267)
                      +. .+..+.+++..+++.........                        .                         ..+.
T Consensus       224 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~  303 (426)
T d1hzua2         224 AANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG  303 (426)
T ss_dssp             EETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSS
T ss_pred             eeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCC
Confidence            65 56678888887765433221000                        0                         0112


Q ss_pred             CcEEEEEEccCCCEEEE-------EEeCCeEEEEeCCccceeeeccc-----ccCCccceEEEEEECCCCCeEE-Ee---
Q 024451          186 PHVTSIAFSISGRLLFA-------GYSNGDCYVWDTLLAKVVLNLGS-----LQNSHEGRITCLGLSADGSALC-TG---  249 (267)
Q Consensus       186 ~~v~~~~~s~~~~~l~~-------g~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~~l~-sg---  249 (267)
                      ..+..++|+|++++|++       +..++.|++||+.+++....+..     ....|...+..++|||||++++ ++   
T Consensus       304 ~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~  383 (426)
T d1hzua2         304 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG  383 (426)
T ss_dssp             SCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCC
T ss_pred             CceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecC
Confidence            34677899999999995       45678999999887765433211     1134667799999999999774 32   


Q ss_pred             -ECCCcEEEEecCceE
Q 024451          250 -SWDTNLKIWAFGGYR  264 (267)
Q Consensus       250 -s~dg~i~~w~~~~~~  264 (267)
                       +.|+.|+|||...++
T Consensus       384 ~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         384 KNDSSALVVVDDKTLK  399 (426)
T ss_dssp             TTSCCEEEEEETTTTE
T ss_pred             CCCCCeEEEEECCCCe
Confidence             458889999976654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=3.6e-21  Score=151.14  Aligned_cols=236  Identities=15%  Similarity=0.178  Sum_probs=173.8

Q ss_pred             ceeeCCCCCeE-EEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l-~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      .++|+|||++| ++++.++.|++||+....       ..+.+..|.. +..+.|++++...++++..++.+.+|+..++.
T Consensus        36 ~va~spdG~~l~v~~~~~~~i~v~d~~t~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (301)
T d1l0qa2          36 GAVISPDGTKVYVANAHSNDVSIIDTATNN-------VIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT  107 (301)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEETTTTE-------EEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEeCCCCEEEEEECCCCEEEEEECCCCc-------eeeeeecccc-ccccccccccccccccccccceeeecccccce
Confidence            36899999977 577789999999986532       3445555544 57789999887777788888999999999887


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC-
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-  159 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-  159 (267)
                      ....+.      +......+.+++.+..+++++..++.+.+|+.... .....+. +......+.++|+++.++++..+ 
T Consensus       108 ~~~~~~------~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  179 (301)
T d1l0qa2         108 VAGTVK------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTVS-VGRSPKGIAVTPDGTKVYVANFDS  179 (301)
T ss_dssp             EEEEEE------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CCSSEEEEEECTTSSEEEEEETTT
T ss_pred             eeeecc------ccccceEEEeecCCCeeeeeeccccceeeeecccc-ceeeecc-cCCCceEEEeeccccceeeecccc
Confidence            665542      33456778888877777778888999999998643 3344443 34557889999999988777755 


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC---CeEEEEeCCccceeeecccccCCccceEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITC  236 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  236 (267)
                      +.+.+|+....+.......      ...+..++|++++..++.+..+   +.|++||..+.+....+.     +...+.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~-----~~~~~~~  248 (301)
T d1l0qa2         180 MSISVIDTVTNSVIDTVKV------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-----VGPDPAG  248 (301)
T ss_dssp             TEEEEEETTTTEEEEEEEC------SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-----CCSSEEE
T ss_pred             cccccccccceeeeecccc------cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc-----CCCCEEE
Confidence            6677787766554433221      1246788999999988776544   679999998887665431     2345789


Q ss_pred             EEECCCCCeE-EEeECCCcEEEEecCceE
Q 024451          237 LGLSADGSAL-CTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       237 ~~~~p~~~~l-~sgs~dg~i~~w~~~~~~  264 (267)
                      ++|+|||++| ++++.|+.|++||+...+
T Consensus       249 va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         249 IAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            9999999986 677789999999975443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1.1e-21  Score=156.34  Aligned_cols=237  Identities=12%  Similarity=0.090  Sum_probs=162.5

Q ss_pred             CeEEEccCCCeEEEeecCCCCCCCCCCccccccc--CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451           10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG   87 (267)
Q Consensus        10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   87 (267)
                      +++++++.|++|++||+...       .+...+.  .+...+.+++|+|++..++++++.++.|.+||+.+++....+..
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~-------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~   74 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM-------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT-------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEEcCCCEEEEEECCCC-------eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            57999999999999998753       2333332  34455778999998764456788899999999999877665543


Q ss_pred             ccccCCccceEEEEEeCCCCeEEEEec------------CCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEE
Q 024451           88 EFQSGHTADVLSVSISGSNSRMFVSGS------------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT  155 (267)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  155 (267)
                      .....+...+..+.+++.... ++++.            .+..+.+||.... .....+. +...+..+.|+|+++++++
T Consensus        75 ~~~~~~~~~~~~v~~s~dg~~-l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~  151 (337)
T d1pbyb_          75 STPEERVKSLFGAALSPDGKT-LAIYESPVRLELTHFEVQPTRVALYDAETL-SRRKAFE-APRQITMLAWARDGSKLYG  151 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSE-EEEEEEEEEECSSCEEECCCEEEEEETTTT-EEEEEEE-CCSSCCCEEECTTSSCEEE
T ss_pred             CCCcccccceeeEEEcCCCcE-EEEeecCCcceeeeccccccceeeccccCC-eEEEecc-ccCCceEEEEcCCCCEEEE
Confidence            222223344556778865444 43333            4678888988643 3444444 4456889999999999998


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEEeecCC-----------------------------------------------------
Q 024451          156 GSDDGTCRLFDIRTGHQLQVYYQQHGE-----------------------------------------------------  182 (267)
Q Consensus       156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------------------------------------------------  182 (267)
                      ++.+  +.+||..+++....+......                                                     
T Consensus       152 ~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (337)
T d1pbyb_         152 LGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             ESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             EcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCC
Confidence            8654  677888776544332110000                                                     


Q ss_pred             --------CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCc
Q 024451          183 --------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN  254 (267)
Q Consensus       183 --------~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~  254 (267)
                              .....+....+++++.+++.+  ++.+++||..+.+.+...     .+...+.+++|+|||++|++++.|+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~s~dG~~l~v~~~~~~  302 (337)
T d1pbyb_         230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-----PLPHSYYSVNVSTDGSTVWLGGALGD  302 (337)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE-----ECSSCCCEEEECTTSCEEEEESBSSE
T ss_pred             cEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE-----cCCCCEEEEEECCCCCEEEEEeCCCc
Confidence                    001123345567777777655  588999999988877654     24456789999999999999999999


Q ss_pred             EEEEecCceEe
Q 024451          255 LKIWAFGGYRR  265 (267)
Q Consensus       255 i~~w~~~~~~~  265 (267)
                      |++||...+..
T Consensus       303 i~v~D~~t~~~  313 (337)
T d1pbyb_         303 LAAYDAETLEK  313 (337)
T ss_dssp             EEEEETTTCCE
T ss_pred             EEEEECCCCcE
Confidence            99999865543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=6.6e-22  Score=159.14  Aligned_cols=190  Identities=14%  Similarity=0.117  Sum_probs=147.0

Q ss_pred             EEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEec-CCC-eEEEEeCCCcc
Q 024451           51 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CDS-TARLWDTRVAS  128 (267)
Q Consensus        51 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~-~d~-~i~iwd~~~~~  128 (267)
                      .-.|+|.+++++++++ ++.|++||+..+....+       +|...+.+++|+|. ++.+++++ .++ .|++||.+.  
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~-------~~~~~v~~~~~spD-g~~l~~~~~~~g~~v~v~d~~~--   75 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV-------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT--   75 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC-------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT--
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc-------cCCCCEEEEEECCC-CCEEEEEEcCCCCEEEEEECCC--
Confidence            3579995456777765 57999999988765432       57888999999975 55555554 443 799999874  


Q ss_pred             cceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe---
Q 024451          129 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---  205 (267)
Q Consensus       129 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---  205 (267)
                      .....+..|...+.+++|+|+++++++++.++.+++|+..+++.......     +...+.+++|+|+|++|+.+..   
T Consensus        76 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~spdg~~la~~~~~~~  150 (360)
T d1k32a3          76 GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS-----REAMITDFTISDNSRFIAYGFPLKH  150 (360)
T ss_dssp             CCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-----SSSCCCCEEECTTSCEEEEEEEECS
T ss_pred             CcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeec-----ccccccchhhccceeeeeeeccccc
Confidence            34566778999999999999999999999999999999998876554432     1234678999999999986543   


Q ss_pred             -------CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          206 -------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       206 -------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                             ++.+++||....+....     ..|...+..++|+|+|++|++++.|+.+++|+..
T Consensus       151 ~~~~~~~~~~~~v~d~~~~~~~~~-----~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         151 GETDGYVMQAIHVYDMEGRKIFAA-----TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             STTCSCCEEEEEEEETTTTEEEEC-----SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             cceeeccccceeeeccccCceeee-----cccccccccccccCCCCEEEEEeCCCceEccccc
Confidence                   45789999887655432     2456678889999999999999999999999853

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.9e-21  Score=161.17  Aligned_cols=241  Identities=10%  Similarity=0.045  Sum_probs=155.6

Q ss_pred             CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451            9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE   88 (267)
Q Consensus         9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   88 (267)
                      +.++++++.||+|++||+...       .+..++..|. .++.++|+|++ +++++++.|++|++||+.++.........
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~-------~~~~~l~~g~-~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSK-------KIVKVIDTGY-AVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTC-------SEEEEEECCS-SEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             eEEEEEEcCCCEEEEEECCCC-------cEEEEEeCCC-CeeEEEECCCC-CEEEEEeCCCCEEEEEccCCceeEEEEEe
Confidence            346788999999999998753       2556666664 58999999986 57899999999999999987644433222


Q ss_pred             cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEE-----------ecCCCEEEEee
Q 024451           89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF-----------FPDGNRFGTGS  157 (267)
Q Consensus        89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~l~~~~  157 (267)
                      ...+|...+.++.++|.+..+++++..++.+++||.... .....+..|...+....+           ++++..++...
T Consensus       103 ~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~  181 (426)
T d1hzua2         103 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  181 (426)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc-ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEec
Confidence            223455666666677655555677778999999998753 344455555444444444           44444443332


Q ss_pred             -CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCccceeeecc-----------
Q 024451          158 -DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLG-----------  224 (267)
Q Consensus       158 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~-----------  224 (267)
                       ..+.+.+++......+......    ....+..+.|+|++++++++.. +..+.+++....+......           
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (426)
T d1hzua2         182 KETGKVLLVNYKDIDNLTVTSIG----AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA  257 (426)
T ss_dssp             TTTTEEEEEECSSSSSCEEEEEE----CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCE
T ss_pred             CCCCeEEEEEeccccceeeEEec----cCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccccee
Confidence             2234444444433322211111    1235788999999998877764 4567777765433211000           


Q ss_pred             ---------------------------------------cccCCccceEEEEEECCCCCeEE-------EeECCCcEEEE
Q 024451          225 ---------------------------------------SLQNSHEGRITCLGLSADGSALC-------TGSWDTNLKIW  258 (267)
Q Consensus       225 ---------------------------------------~~~~~~~~~v~~~~~~p~~~~l~-------sgs~dg~i~~w  258 (267)
                                                             .....|...+..++|+|++++|+       +++.|++|+||
T Consensus       258 ~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vw  337 (426)
T d1hzua2         258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF  337 (426)
T ss_dssp             EEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEE
T ss_pred             eeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEE
Confidence                                                   00124666789999999999999       56778999999


Q ss_pred             ecCce
Q 024451          259 AFGGY  263 (267)
Q Consensus       259 ~~~~~  263 (267)
                      ++..+
T Consensus       338 d~~t~  342 (426)
T d1hzua2         338 DLKNL  342 (426)
T ss_dssp             ETTCT
T ss_pred             ECCCC
Confidence            97543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=3.5e-20  Score=153.68  Aligned_cols=256  Identities=10%  Similarity=0.003  Sum_probs=162.3

Q ss_pred             ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .++|+|||+++++++.|+++++||+.....  ......+...+|.+.+.+..|+|++..++++++.+++|++||.+++..
T Consensus        66 ~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~--~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~  143 (432)
T d1qksa2          66 ISRLSASGRYLFVIGRDGKVNMIDLWMKEP--TTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP  143 (432)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSC--CEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred             EEEECCCCCEEEEEcCCCCEEEEEeeCCCc--eEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc
Confidence            468999999999999999999999865321  111122344578888888889998876668899999999999999877


Q ss_pred             EEEeCCcc------ccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-eEEeeccccceeEEEEecCCCEEE
Q 024451           82 TSVFGGEF------QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFG  154 (267)
Q Consensus        82 ~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~  154 (267)
                      ...+....      ...+......+.+++.+..++++...++.|.+|+....... +..+ .+......+.|+|+|++++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i-~~g~~~~~~~~spdg~~~~  222 (432)
T d1qksa2         144 KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFI  222 (432)
T ss_dssp             EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEE
T ss_pred             eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEE-cccCccccceECCCCCEEE
Confidence            66553211      12345566778888877777788888999999997643322 2222 3456688999999999877


Q ss_pred             Eee-CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccce-------eeeccc
Q 024451          155 TGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKV-------VLNLGS  225 (267)
Q Consensus       155 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~-------~~~~~~  225 (267)
                      +++ .++.+.++|.++.+.....................+...+...++.. .++.+.+|+......       ......
T Consensus       223 va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~  302 (432)
T d1qksa2         223 TAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA  302 (432)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred             EeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEc
Confidence            766 45689999998877655443222111222233333443333333332 256677776433211       000000


Q ss_pred             ---------------------ccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          226 ---------------------LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       226 ---------------------~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                                           ....|.....++++ ||++.|++++.|+.+++|++.
T Consensus       303 ~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~  358 (432)
T d1qksa2         303 LGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIA  358 (432)
T ss_dssp             SCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHH
T ss_pred             CCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEecccc
Confidence                                 00112222233444 777778888888888888764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=5.4e-20  Score=146.86  Aligned_cols=242  Identities=12%  Similarity=0.073  Sum_probs=154.2

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccccc-CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      .+|++++++|++++.|++|.+||+...       ++.++++ +|...+.++.|+|++...+++++.++.|++||+.+++.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~-------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD-------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT-------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC-------CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee
Confidence            478999999999999999999999753       2444443 45666789999998765567788899999999999876


Q ss_pred             EEEeCCccc-cCCccceEEEEEeCCCCeEEEEe-----------cCCCeEEEEeCCCcccceEEeecc--ccceeEEEEe
Q 024451           82 TSVFGGEFQ-SGHTADVLSVSISGSNSRMFVSG-----------SCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFF  147 (267)
Q Consensus        82 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~s~-----------~~d~~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~  147 (267)
                      ...+..... ..+...+..+.+++....++++.           ..+..+.+|+..... ....+..+  ...+..+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  153 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EAKPVRTFPMPRQVYLMRAA  153 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GBCCSEEEECCSSCCCEEEC
T ss_pred             eeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccce-eeeEEEeeeccCceEEEEec
Confidence            655432111 11222345677776544443332           246778888765322 11111111  1223334444


Q ss_pred             cCCCEEEEeeCCCcEEEEeCCCCeeeEE----------------------------------------------------
Q 024451          148 PDGNRFGTGSDDGTCRLFDIRTGHQLQV----------------------------------------------------  175 (267)
Q Consensus       148 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~----------------------------------------------------  175 (267)
                      +++..++++   ..+.+|++.+++....                                                    
T Consensus       154 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (346)
T d1jmxb_         154 DDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY  230 (346)
T ss_dssp             TTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred             CCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence            444443332   2344444443322221                                                    


Q ss_pred             ---------------EEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          176 ---------------YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       176 ---------------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                                     ....    ....+..+.+++++.+++... ++.+++||..+.+.+....     +...+.+++|+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-----~~~~~~~va~s  300 (346)
T d1jmxb_         231 GYLSVDLKTGKTHTQEFAD----LTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-----LDHTYYCVAFD  300 (346)
T ss_dssp             EEEEEETTTCCEEEEEEEE----CSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-----CSSCCCEEEEC
T ss_pred             eEEEEECCCCceEEEEeec----ccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-----CCCCEEEEEEc
Confidence                           1111    112356677788877777664 4679999998887665442     33468899999


Q ss_pred             CCCCeEEEeECCCcEEEEecCceEe
Q 024451          241 ADGSALCTGSWDTNLKIWAFGGYRR  265 (267)
Q Consensus       241 p~~~~l~sgs~dg~i~~w~~~~~~~  265 (267)
                      |||++|++++.|+.|++||...++.
T Consensus       301 ~DG~~l~v~~~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         301 KKGDKLYLGGTFNDLAVFNPDTLEK  325 (346)
T ss_dssp             SSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             CCCCEEEEEeCCCcEEEEECccCCE
Confidence            9999999999999999999876654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=9.5e-19  Score=144.96  Aligned_cols=240  Identities=11%  Similarity=-0.018  Sum_probs=163.6

Q ss_pred             CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451            8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG   87 (267)
Q Consensus         8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   87 (267)
                      +..++++.+.||+|.+||....       .+.+.+..|. .++.++|+|++ +++++++.|++|++||+.++........
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~-------~v~~~~~~g~-~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~~~i  101 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTY-------EIKTVLDTGY-AVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEI  101 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTC-------CEEEEEECSS-CEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCC-------cEEEEEeCCC-CeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEEEEE
Confidence            3345699999999999998753       2556666664 58999999976 5889999999999999987653322211


Q ss_pred             ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec-----------cccceeEEEEecCCCEE-EE
Q 024451           88 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-----------HEGDVNTVKFFPDGNRF-GT  155 (267)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l-~~  155 (267)
                      .....|...+.+..++|....+++++..++.+++||.... .....+..           +......+.++|+++.+ ++
T Consensus       102 ~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs  180 (432)
T d1qksa2         102 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  180 (432)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc-cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEE
Confidence            1112344445555555544456688899999999998753 34444333           23445678889998876 45


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCccceeeecc----------
Q 024451          156 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLG----------  224 (267)
Q Consensus       156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~----------  224 (267)
                      ...++.|.+||..+.+..........    ..+..+.|+|+|+++++++. ++.+.++|....+......          
T Consensus       181 ~~~~~~i~~~d~~~~~~~~~~~i~~g----~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~  256 (432)
T d1qksa2         181 VKETGKILLVDYTDLNNLKTTEISAE----RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR  256 (432)
T ss_dssp             ETTTTEEEEEETTCSSEEEEEEEECC----SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred             EccCCeEEEEEccCCCcceEEEEccc----CccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCc
Confidence            56789999999987765443322222    34789999999998887775 4688888876544321110          


Q ss_pred             ------------------------------cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          225 ------------------------------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       225 ------------------------------~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                                                    .....|...+....++|++..+++++.++..++|...
T Consensus       257 ~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~  323 (432)
T d1qksa2         257 GANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  323 (432)
T ss_dssp             CEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             ccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecc
Confidence                                          0001123356777888888888999999999999653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.83  E-value=5.3e-17  Score=126.90  Aligned_cols=225  Identities=14%  Similarity=0.155  Sum_probs=162.4

Q ss_pred             EEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCcccc
Q 024451           12 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS   91 (267)
Q Consensus        12 l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~   91 (267)
                      .++++.|++|.+||+...       ++.+.+... .....++|+|++..++++++.++.|++||+.++.....+..    
T Consensus         5 yV~~~~~~~v~v~D~~t~-------~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~----   72 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSN-------KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA----   72 (301)
T ss_dssp             EEEETTTTEEEEEETTTT-------EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC----
T ss_pred             EEEECCCCEEEEEECCCC-------eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec----
Confidence            467788999999998652       233444322 34678999998765556788899999999999887766532    


Q ss_pred             CCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE-EeeCCCcEEEEeCCCC
Q 024451           92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDDGTCRLFDIRTG  170 (267)
Q Consensus        92 ~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~  170 (267)
                       + ..+..+.+++....+++++..++.+.+|+... ......+. +.....++.++|+++.++ ++..++.+.+|+..+.
T Consensus        73 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~  148 (301)
T d1l0qa2          73 -G-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (301)
T ss_dssp             -S-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             -c-ccccccccccccccccccccccceeeeccccc-ceeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeecccc
Confidence             2 24577888887777778888889999999864 33444444 445678899999998775 5557889999999988


Q ss_pred             eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEe
Q 024451          171 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG  249 (267)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg  249 (267)
                      +....+...      ..+..+.+++++..++++..+ +.+.+|+....+.....     .+......++++|+++.++.+
T Consensus       149 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~v~  217 (301)
T d1l0qa2         149 AVINTVSVG------RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV-----KVEAAPSGIAVNPEGTKAYVT  217 (301)
T ss_dssp             EEEEEEECC------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-----ECSSEEEEEEECTTSSEEEEE
T ss_pred             ceeeecccC------CCceEEEeeccccceeeecccccccccccccceeeeecc-----cccCCcceeeccccccccccc
Confidence            766544321      246888999999988887755 67777876655443322     233456789999999988765


Q ss_pred             EC---CCcEEEEecCce
Q 024451          250 SW---DTNLKIWAFGGY  263 (267)
Q Consensus       250 s~---dg~i~~w~~~~~  263 (267)
                      +.   ++.|.+|+....
T Consensus       218 ~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         218 NVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             EECSSCCEEEEEETTTT
T ss_pred             cccceeeeeeeeecCCC
Confidence            43   467999997653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=6.6e-18  Score=134.14  Aligned_cols=242  Identities=13%  Similarity=0.141  Sum_probs=146.0

Q ss_pred             eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccc
Q 024451           11 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ   90 (267)
Q Consensus        11 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~   90 (267)
                      .+++++.|++|++|++....    ...... ...|.+.+..++|+|++..+++++..|+.|++|++........+...  
T Consensus         6 v~v~~~~~~~I~v~~~~~~~----~l~~~~-~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~--   78 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG----ALTLTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE--   78 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS----CEEEEE-EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE--
T ss_pred             EEEECCCCCcEEEEEEcCCC----CeEEEE-EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee--
Confidence            46788899999999986422    112222 23577889999999987544456667899999999765322222111  


Q ss_pred             cCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-ceEEeeccccceeEEEEecCCCEEEEee-CCCcEEEEeCC
Q 024451           91 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIR  168 (267)
Q Consensus        91 ~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~  168 (267)
                      ..+...+..+++++.+..++++...++.+.+|+...... .......+...++++.++|++++++.++ .+..+.+|+..
T Consensus        79 ~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~  158 (333)
T d1ri6a_          79 SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS  158 (333)
T ss_dssp             EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEec
Confidence            123344667889976555544445677899998653321 1222334566788999999999887776 45678888876


Q ss_pred             CCeeeEEEEee-cCCC-----------------------------------------------------CCCcEEEEEEc
Q 024451          169 TGHQLQVYYQQ-HGEN-----------------------------------------------------EIPHVTSIAFS  194 (267)
Q Consensus       169 ~~~~~~~~~~~-~~~~-----------------------------------------------------~~~~v~~~~~s  194 (267)
                      ........... ....                                                     .......++++
T Consensus       159 ~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  238 (333)
T d1ri6a_         159 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT  238 (333)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred             cCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEe
Confidence            53221110000 0000                                                     00123445667


Q ss_pred             cCCCEEEEEE-eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeE-CCCcEEEEec
Q 024451          195 ISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAF  260 (267)
Q Consensus       195 ~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~  260 (267)
                      ++++++++.. .++.+.+|+............. ..+......++|+|||++|++++ .++.|++|++
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         239 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGF-QPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE-EECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             cccCceeeecccCCeEEEEEEcCCCCEEEEEEE-eCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            7777655543 4567777765443322221111 11234456799999999877654 5689999966

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=3.7e-16  Score=123.79  Aligned_cols=197  Identities=13%  Similarity=0.080  Sum_probs=131.2

Q ss_pred             ceeeCCCCCeE-EEccCCCeEEEeecCCCCCCCCCCcccccccC-----CeeeEEEEEEecCCCeeEEEee---------
Q 024451            2 TCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDEDTHLITSS---------   66 (267)
Q Consensus         2 ~~~~~~~g~~l-~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l~s~~---------   66 (267)
                      .++|+|||+++ ++++.++.|.+||+....       ....+..     +...+..++|+|++. +++++.         
T Consensus        38 ~i~~spDg~~l~v~~~~~~~v~v~D~~t~~-------~~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~~~~~~~~~  109 (337)
T d1pbyb_          38 VPMVAPGGRIAYATVNKSESLVKIDLVTGE-------TLGRIDLSTPEERVKSLFGAALSPDGK-TLAIYESPVRLELTH  109 (337)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEETTTCC-------EEEEEECCBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSC
T ss_pred             EEEECCCCCEEEEEECCCCeEEEEECCCCc-------EEEEEecCCCcccccceeeEEEcCCCc-EEEEeecCCcceeee
Confidence            57899999987 677889999999987532       2222222     234455688999765 455554         


Q ss_pred             ---CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc---------------
Q 024451           67 ---GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---------------  128 (267)
Q Consensus        67 ---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~---------------  128 (267)
                         .+..+.+||..++.....+.      +...+..+.+++.. +++++++.  .+.+||.....               
T Consensus       110 ~~~~~~~~~~~d~~~~~~~~~~~------~~~~~~~~~~s~dg-~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~  180 (337)
T d1pbyb_         110 FEVQPTRVALYDAETLSRRKAFE------APRQITMLAWARDG-SKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETY  180 (337)
T ss_dssp             EEECCCEEEEEETTTTEEEEEEE------CCSSCCCEEECTTS-SCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTB
T ss_pred             ccccccceeeccccCCeEEEecc------ccCCceEEEEcCCC-CEEEEEcC--CcceeeeecCcEEEEeecCCccccce
Confidence               46788999999887666553      22345567777644 44455543  35667653210               


Q ss_pred             --------------------------------------------------cceEEeeccccceeEEEEecCCCEEEEeeC
Q 024451          129 --------------------------------------------------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSD  158 (267)
Q Consensus       129 --------------------------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  158 (267)
                                                                        .....+..+......+.++|++.+++.+  
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  258 (337)
T d1pbyb_         181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--  258 (337)
T ss_dssp             CCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--
T ss_pred             ecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--
Confidence                                                              0001122233445566777777777654  


Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL  223 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  223 (267)
                      ++.+++||+.+++.+..+...      ..+.+++|+|+|++|++++.+|.|++||..+.+.+..+
T Consensus       259 ~~~i~v~d~~~~~~~~~~~~~------~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         259 YNVLESFDLEKNASIKRVPLP------HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             ESEEEEEETTTTEEEEEEECS------SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             cccEEEEECCCCcEEEEEcCC------CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            589999999998876654321      24678999999999999999999999999887766544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.72  E-value=1.5e-14  Score=116.57  Aligned_cols=240  Identities=10%  Similarity=-0.019  Sum_probs=148.7

Q ss_pred             ceeeCCCCCeEEEcc----------CCCeEEEeecCCCCCCCCCCcccccccCCeeeE-------EEEEEecCCCeeEE-
Q 024451            2 TCAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV-------SCCQYVPDEDTHLI-   63 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~----------~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~l~-   63 (267)
                      .++|+|||++|++++          .++.|.+||.....       ....+..+....       ..+.|++++...++ 
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~  142 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL-------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFF  142 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCc-------EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEE
Confidence            368999999999875          46889999987532       222222232222       33567776654332 


Q ss_pred             EeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc------
Q 024451           64 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------  137 (267)
Q Consensus        64 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~------  137 (267)
                      ....++.+.+|+..+......         .....++.+++.....+++.+.|+.+.+|+..... .......+      
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~-~~~~~~~~~~~~~~  212 (373)
T d2madh_         143 QFAAGPAVGLVVQGGSSDDQL---------LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA-AGAGLVGAMLTAAQ  212 (373)
T ss_pred             EEcCCCceEEeeccCCeEEEE---------eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCce-eeEEEeeeccccCc
Confidence            334567788888876544332         22345667777777788899999999999976432 22222111      


Q ss_pred             ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCC-------CCCCcEEEEEEccCCCE----------E
Q 024451          138 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEIPHVTSIAFSISGRL----------L  200 (267)
Q Consensus       138 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~----------l  200 (267)
                      ........+.+++ .++..+.++.+.+|+................       ........+++++++..          +
T Consensus       213 ~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  291 (373)
T d2madh_         213 NLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW  291 (373)
T ss_pred             cceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceE
Confidence            1122344555554 4455677889999998776533221110000       00112234455555554          3


Q ss_pred             EEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCe--EEEeECCCcEEEEecCceE
Q 024451          201 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA--LCTGSWDTNLKIWAFGGYR  264 (267)
Q Consensus       201 ~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--l~sgs~dg~i~~w~~~~~~  264 (267)
                      +....++.+.+||..+++.+..+     .+...+..++|+|||+.  +++++.|+.|++||....+
T Consensus       292 ~~~~~~~~v~~~d~~t~~~~~~~-----~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~  352 (373)
T d2madh_         292 KLHAAAKEVTSVTGLVGQTSSQI-----SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EeecCCCeEEEEECCCCcEEEEe-----cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            44556778999999888776554     35567889999999984  4789999999999976543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=7.4e-16  Score=123.36  Aligned_cols=243  Identities=13%  Similarity=0.024  Sum_probs=143.1

Q ss_pred             ceeeCCCCCeEEEcc----------CCCeEEEeecCCCCCCCCCCccccccc-------CCeeeEEEEEEecCCCeeEEE
Q 024451            2 TCAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRMLS-------GHKGYVSCCQYVPDEDTHLIT   64 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~----------~d~~v~~w~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~l~s   64 (267)
                      .++|+|||+.|+.++          .|+.|++||.....       ....+.       ........+.|+|++.. ++.
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-~~v  122 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL-------PTADIELPDAPRFLVGTYPWMTSLTPDGKT-LLF  122 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC-------EEEEEEETTCCCCCBSCCGGGEEECTTSSE-EEE
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC-------EEEEEecCCcceeecCCCCceEEEecCCCe-eEE
Confidence            368999999887654          47899999987532       111111       11122344688997754 443


Q ss_pred             e--eCCCeEEEEeCCCCeeEEEeCCccccC--CccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccc
Q 024451           65 S--SGDQTCVLWDITTGLRTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD  140 (267)
Q Consensus        65 ~--~~d~~v~iwd~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  140 (267)
                      +  +.+..+.+|+..++.....+.......  .......+.+++....+++....++.+.+++....      ...+...
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~------~~~~~~~  196 (355)
T d2bbkh_         123 YQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF------HPEDEFL  196 (355)
T ss_dssp             EECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC------SCTTSCB
T ss_pred             ecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccc------cceecce
Confidence            3  456789999999887665543110000  00011122233222222222222333333322111      1123344


Q ss_pred             eeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCC-------CCCCcEEEEEEccCCCEEEEEEeCC------
Q 024451          141 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEIPHVTSIAFSISGRLLFAGYSNG------  207 (267)
Q Consensus       141 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~g~~dg------  207 (267)
                      +....+.+++..++.++.++.+.+|++..++...........       ........+++++++..++....++      
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~  276 (355)
T d2bbkh_         197 INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK  276 (355)
T ss_dssp             CSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred             eeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeec
Confidence            566778888889999999999999999876532111000000       0001123578899999888776543      


Q ss_pred             ----eEEEEeCCccceeeecccccCCccceEEEEEECCCCC--eEEEeECCCcEEEEecCce
Q 024451          208 ----DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS--ALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       208 ----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~l~sgs~dg~i~~w~~~~~  263 (267)
                          .|.+||..+.+.+..+     .+...+.+++|+|||+  ++++++.|+.|.+||....
T Consensus       277 ~~~~~v~v~d~~t~~~~~~~-----~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         277 TASRFVVVLDAKTGERLAKF-----EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  333 (355)
T ss_dssp             SCEEEEEEEETTTCCEEEEE-----EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCeEEEEeCCCCcEEEEe-----cCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence                6999999888766544     2345688999999998  4567788999999997443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.59  E-value=1.6e-14  Score=114.62  Aligned_cols=103  Identities=15%  Similarity=0.059  Sum_probs=76.4

Q ss_pred             cCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEE
Q 024451          114 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF  193 (267)
Q Consensus       114 ~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  193 (267)
                      ..+..+.+|+.............|...+..+.+++++.+++.... +.+.+||..+++.+..+...      ..+.+++|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~------~~~~~va~  299 (346)
T d1jmxb_         227 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLD------HTYYCVAF  299 (346)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECS------SCCCEEEE
T ss_pred             cCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCC------CCEEEEEE
Confidence            344456667665444334445567777888999998888776654 58999999998876554321      24789999


Q ss_pred             ccCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451          194 SISGRLLFAGYSNGDCYVWDTLLAKVVLNL  223 (267)
Q Consensus       194 s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  223 (267)
                      +|+|+.+++++.||.|++||..+.+.+..+
T Consensus       300 s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i  329 (346)
T d1jmxb_         300 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNI  329 (346)
T ss_dssp             CSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             cCCCCEEEEEeCCCcEEEEECccCCEEEEE
Confidence            999999999999999999999988776544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.54  E-value=5.1e-12  Score=101.39  Aligned_cols=216  Identities=9%  Similarity=0.001  Sum_probs=132.6

Q ss_pred             eeeCCCCCeEEEcc--CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            3 CAFSPTGQSVACGG--LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         3 ~~~~~~g~~l~~~~--~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      +.|+++++.+....  .++.+.+|+....           ....+.....++.++|++...+++.+.|+++.+|+...+.
T Consensus       130 ~~~s~dg~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~  198 (373)
T d2madh_         130 NANTPNNADLLFFQFAAGPAVGLVVQGGS-----------SDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA  198 (373)
T ss_pred             EEEEeCCCcEEEEEEcCCCceEEeeccCC-----------eEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCce
Confidence            46777887655443  4556777775432           1223444566788999887778899999999999998775


Q ss_pred             eEEEeCCcccc-CCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-eEEeecc----------ccceeEEEEec
Q 024451           81 RTSVFGGEFQS-GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGH----------EGDVNTVKFFP  148 (267)
Q Consensus        81 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-~~~~~~~----------~~~i~~~~~~~  148 (267)
                      ........... +.........+.  ....++..+.++.+.+|+....... ......+          ......+.+++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (373)
T d2madh_         199 AGAGLVGAMLTAAQNLLTQPAQAN--KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK  276 (373)
T ss_pred             eeEEEeeeccccCccceeeeEEEC--CCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEec
Confidence            54443221111 111222233333  3345567778889999987543211 1111111          11223345555


Q ss_pred             CCCE----------EEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE--EEEEEeCCeEEEEeCCc
Q 024451          149 DGNR----------FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL--LFAGYSNGDCYVWDTLL  216 (267)
Q Consensus       149 ~~~~----------l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~g~~dg~i~i~d~~~  216 (267)
                      ++..          ++....++.+.+||..+++.+..+..      ...+..++|+|+|+.  ++++..|+.|++||..+
T Consensus       277 d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~------~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL------GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             CCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC------CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            5543          44556678899999998877654321      134789999999984  46788999999999999


Q ss_pred             cceeeecccccCCccceEEEEEECC
Q 024451          217 AKVVLNLGSLQNSHEGRITCLGLSA  241 (267)
Q Consensus       217 ~~~~~~~~~~~~~~~~~v~~~~~~p  241 (267)
                      ++.+..+.    .+...-..+++.+
T Consensus       351 g~~~~~~~----~~g~~P~~l~~~~  371 (373)
T d2madh_         351 GDQDQSTV----ELGSGPQVLSVMN  371 (373)
T ss_pred             CCEEEEEC----CCCCCCcEEEEec
Confidence            98876652    3444445566554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1.9e-12  Score=101.97  Aligned_cols=194  Identities=10%  Similarity=0.110  Sum_probs=128.1

Q ss_pred             eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE--eeccc
Q 024451           61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT--FHGHE  138 (267)
Q Consensus        61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~--~~~~~  138 (267)
                      .+++++.|++|++|++++......+.   ...|...+..++++|....+++++..|+.|++|++.........  ...+.
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~---~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~   82 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQ---VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   82 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEE---EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEE---EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccC
Confidence            45778899999999987543222211   01356778899999865555577777999999998643322221  22334


Q ss_pred             cceeEEEEecCCCEEEEeeC-CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCc
Q 024451          139 GDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLL  216 (267)
Q Consensus       139 ~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~  216 (267)
                      ..+..++|+|+|+++++++. ++.+.+|+..............   ....+.++.++|++++++++.. +..+.+|+...
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE---GLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC---CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccC---CCccceEEEeeecceeeeccccccceeeEEEecc
Confidence            55778999999999988874 7789999987665443332221   2234678899999998888774 56799998655


Q ss_pred             cceeee--cccccCCccceEEEEEECCCCCeEEEeE-CCCcEEEEec
Q 024451          217 AKVVLN--LGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAF  260 (267)
Q Consensus       217 ~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~  260 (267)
                      ......  ..............++|++++.++.... ..+...+|++
T Consensus       160 ~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         160 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL  206 (333)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred             CCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEee
Confidence            332211  1111123344567899999999887554 4556777764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=1.5e-13  Score=110.69  Aligned_cols=243  Identities=9%  Similarity=-0.005  Sum_probs=143.4

Q ss_pred             eeeCCCCCeEEEc----------cCCCeEEEeecCCCCCCCCCCccccc-ccCCeeeEEEEEEecCCCeeEEEeeCCCeE
Q 024451            3 CAFSPTGQSVACG----------GLDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTC   71 (267)
Q Consensus         3 ~~~~~~g~~l~~~----------~~d~~v~~w~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v   71 (267)
                      .+|+|||+.|+.+          ..|++|++||....... ...+.... ..........++|+|++...+++...++.+
T Consensus        70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~-~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEe-eeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            5799999988874          45888999998652210 00000000 000111123578999876444444567999


Q ss_pred             EEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE-----EeeccccceeEEEE
Q 024451           72 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-----TFHGHEGDVNTVKF  146 (267)
Q Consensus        72 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~i~~~~~  146 (267)
                      .+||+.+++....+...    ....+     .+.....++..+.||.+.+++.........     ....+...+....+
T Consensus       149 ~~~d~~~~~~~~~~~~~----~~~~~-----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (368)
T d1mdah_         149 AGLSVPGASDDQLTKSA----SCFHI-----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQA  219 (368)
T ss_dssp             EEEEETTTEEEEEEECS----SCCCC-----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEE
T ss_pred             EEEECCCCcEeEEeecc----CcceE-----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccc
Confidence            99999998766654321    11111     112334667788899988888754332211     12233444566777


Q ss_pred             ecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCC--------CCCcEEEEEEccCCCEEEEEEeCC---------eE
Q 024451          147 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN--------EIPHVTSIAFSISGRLLFAGYSNG---------DC  209 (267)
Q Consensus       147 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~g~~dg---------~i  209 (267)
                      .+++..+.+.  ++.+.+++...+........ ....        .......+++++++..++....++         .|
T Consensus       220 ~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v  296 (368)
T d1mdah_         220 NYPGMLVWAV--ASSILQGDIPAAGATMKAAI-DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT  296 (368)
T ss_dssp             TTTTEEEECB--SSCCEEEECCSSCCEEECCC-CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred             ccCcEEEEec--CCCEEEEeecCCceEEEeec-ccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceE
Confidence            7777666543  45666677655443221110 0000        001123467888888776654332         58


Q ss_pred             EEEeCCccceeeecccccCCccceEEEEEECCCCCe--EEEeECCCcEEEEecCce
Q 024451          210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA--LCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       210 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--l~sgs~dg~i~~w~~~~~  263 (267)
                      .+||..+++.+..+     .+...+..++|+|||+.  +++++.|+.|.+||....
T Consensus       297 ~v~D~~t~~~~~~~-----~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         297 SSVTASVGQTSGPI-----SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEEESSSCCEEECC-----EEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             EEEECCCCcEeEEe-----cCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            99999888766544     24457889999999973  467778999999997543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.39  E-value=2.2e-11  Score=96.74  Aligned_cols=198  Identities=13%  Similarity=0.125  Sum_probs=116.3

Q ss_pred             ceeeCCCCCeEEEc--cCCCeEEEeecCCCCCCCCCCcccccccCCeee-------EEEEEEecCCCeeEEEeeCCCeEE
Q 024451            2 TCAFSPTGQSVACG--GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY-------VSCCQYVPDEDTHLITSSGDQTCV   72 (267)
Q Consensus         2 ~~~~~~~g~~l~~~--~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~-------v~~~~~~~~~~~~l~s~~~d~~v~   72 (267)
                      .++|+|+|+.++.+  +.+..+.+|+.....       ....+..+...       ...+.+.+++..+++....++.+.
T Consensus       110 ~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~  182 (355)
T d2bbkh_         110 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-------FKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE  182 (355)
T ss_dssp             GEEECTTSSEEEEEECSSSCEEEEEETTTTE-------EEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred             eEEEecCCCeeEEecCCCCceeeeeecCCCc-------EeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEE
Confidence            35799999987765  456788999976421       22222222211       112333333332222223333333


Q ss_pred             EEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-eEEeecc----------ccce
Q 024451           73 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGH----------EGDV  141 (267)
Q Consensus        73 iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-~~~~~~~----------~~~i  141 (267)
                      +++..+.          ...+...+....+.+. ...++.++.++.+.+|+....... +.....+          ....
T Consensus       183 ~~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  251 (355)
T d2bbkh_         183 ITHTEVF----------HPEDEFLINHPAYSQK-AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW  251 (355)
T ss_dssp             EEECCCC----------SCTTSCBCSCCEEETT-TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred             EEecccc----------cceecceeeeccccCC-CCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccce
Confidence            3333221          1223333444556654 456678889999999998643321 1111111          1223


Q ss_pred             eEEEEecCCCEEEEeeCC----------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC--EEEEEEeCCeE
Q 024451          142 NTVKFFPDGNRFGTGSDD----------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDC  209 (267)
Q Consensus       142 ~~~~~~~~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~g~~dg~i  209 (267)
                      ..++++++++.++....+          ..|.+||..+++.+..+...      ..+.+++|+|+|+  +++++..|+.|
T Consensus       252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~------~~~~~~a~spDG~~~l~v~~~~d~~i  325 (355)
T d2bbkh_         252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG------HEIDSINVSQDEKPLLYALSTGDKTL  325 (355)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE------EEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC------CCEEEEEEcCCCCeEEEEEECCCCEE
Confidence            458889998887665433          36999999988776554321      2367899999997  44566778999


Q ss_pred             EEEeCCccceeeec
Q 024451          210 YVWDTLLAKVVLNL  223 (267)
Q Consensus       210 ~i~d~~~~~~~~~~  223 (267)
                      ++||.++++.+..+
T Consensus       326 ~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         326 YIHDAESGEELRSV  339 (355)
T ss_dssp             EEEETTTCCEEEEE
T ss_pred             EEEECCCCCEEEEE
Confidence            99999998877655

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.24  E-value=3.2e-08  Score=75.96  Aligned_cols=245  Identities=16%  Similarity=0.175  Sum_probs=149.2

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEE-eeCCCeEEEEeCCCCee
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT-SSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-~~~d~~v~iwd~~~~~~   81 (267)
                      ++++++|+++++-.....|++||.+..-.  ...+......+....-..+.+.++....++. .+.++.|..++.. +..
T Consensus        28 vavd~dg~i~VaD~~n~rI~v~d~~G~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~  104 (279)
T d1q7fa_          28 VAVNAQNDIIVADTNNHRIQIFDKEGRFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQF  104 (279)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTSCEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCE
T ss_pred             EEEcCCCCEEEEECCCCEEEEEeCCCCEE--EEecccCCCcccccccccccccccccccceeccCCcccccccccc-ccc
Confidence            57889999888877788899998542100  0000000001111122334555554444444 3455677777764 333


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe--eccccceeEEEEecCCCEEEEeeCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDD  159 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d  159 (267)
                      ...+..    ........+++.+ +++++++....+.+.+++..  ...+..+  ..+......+++.++++.+++....
T Consensus       105 ~~~~~~----~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~--g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~  177 (279)
T d1q7fa_         105 VRKFGA----TILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  177 (279)
T ss_dssp             EEEECT----TTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             eeecCC----Ccccccceecccc-CCcEEEEeeccceeeEeccC--CceeecccccccccccceeeeccceeEEeeeccc
Confidence            333321    2233456677764 45677777777788888754  2334443  2344567788999999988888889


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      +.|.+||.. ++.+..+-   ..........++++++|+++++-.. ++.|.+|+. .++.+..+..  .........++
T Consensus       178 ~~V~~~d~~-G~~~~~~g---~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~--~~~~~~p~~va  250 (279)
T d1q7fa_         178 HCVKVFNYE-GQYLRQIG---GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES--KVKHAQCFDVA  250 (279)
T ss_dssp             TEEEEEETT-CCEEEEES---CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE--SSCCSCEEEEE
T ss_pred             cceeeeecC-Cceeeeec---ccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeC--CCCCCCEeEEE
Confidence            999999975 34333321   1222345789999999998877543 457999984 4554433321  11223467899


Q ss_pred             ECCCCCeEEEeECCCcEEEEecCceEe
Q 024451          239 LSADGSALCTGSWDTNLKIWAFGGYRR  265 (267)
Q Consensus       239 ~~p~~~~l~sgs~dg~i~~w~~~~~~~  265 (267)
                      +.|+|++++ ++.+..|++|++-.+.+
T Consensus       251 v~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         251 LMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             EeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence            999997655 56899999999876543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.20  E-value=2.1e-09  Score=87.17  Aligned_cols=238  Identities=10%  Similarity=0.003  Sum_probs=136.9

Q ss_pred             eEEEccCCCeEEEeecCCCC-----------CCCCCC--c----------ccccccCCeeeEEEEEEecCCCeeEEEeeC
Q 024451           11 SVACGGLDSVCSIFNLNSPT-----------DKDGNL--P----------VSRMLSGHKGYVSCCQYVPDEDTHLITSSG   67 (267)
Q Consensus        11 ~l~~~~~d~~v~~w~~~~~~-----------~~~~~~--~----------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~   67 (267)
                      .++|++.+|+|++|++....           ...+..  .          .......|-.......+.|++..++++...
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            37889999999999986321           000000  0          000111233445555567876433455567


Q ss_pred             CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeE------------------EEEeCCCccc
Q 024451           68 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA------------------RLWDTRVASR  129 (267)
Q Consensus        68 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i------------------~iwd~~~~~~  129 (267)
                      ++.|.++|+++.+...++..    .....+..+++++.....++.+..+..+                  ..+|.... .
T Consensus        93 ~~rVavIDl~t~k~~~ii~i----P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~-~  167 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHI----PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM-D  167 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEEC----TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC-S
T ss_pred             CCEEEEEECCCCcEeeEEec----CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc-e
Confidence            88999999999876665431    2345677788886544444444333333                  34555432 2


Q ss_pred             ceEEeeccccceeEEEEecCCCEEEEeeCC-----------------------------------------CcEEEEeCC
Q 024451          130 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-----------------------------------------GTCRLFDIR  168 (267)
Q Consensus       130 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------------------------------------~~i~iwd~~  168 (267)
                      ...++.. .+....+.++|+|+++++.+.+                                         +.+.+++..
T Consensus       168 v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~  246 (441)
T d1qnia2         168 VAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG  246 (441)
T ss_dssp             EEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS
T ss_pred             eeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc
Confidence            2333332 2346789999999988776543                                         223333332


Q ss_pred             CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE-EEeCCeEEEEeCCccceeeec--------ccccCCccceEEEEEE
Q 024451          169 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKVVLNL--------GSLQNSHEGRITCLGL  239 (267)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-g~~dg~i~i~d~~~~~~~~~~--------~~~~~~~~~~v~~~~~  239 (267)
                      ..+.+..+..    .  .....+.++|+|+++++ +..++.+.+||..+.+....-        .......-++ ...+|
T Consensus       247 ~~~v~~~IPv----g--ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgp-lh~~f  319 (441)
T d1qnia2         247 ESEFTRYIPV----P--KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGP-LHTTF  319 (441)
T ss_dssp             SCSSEEEECC----B--SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCE-EEEEE
T ss_pred             CCceEEEEeC----C--CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCc-cccee
Confidence            2222222111    1  12457889999998755 567899999997653321000        0000011122 33589


Q ss_pred             CCCCCeEEEeECCCcEEEEecC
Q 024451          240 SADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       240 ~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .++|+.+.+...|..|..|++.
T Consensus       320 d~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         320 DGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             CSSSEEEEEETTTTEEEEEEHH
T ss_pred             cCCceEEEcccccceEEEeccc
Confidence            9999999999999999999863

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.18  E-value=2.7e-09  Score=86.59  Aligned_cols=190  Identities=7%  Similarity=-0.007  Sum_probs=114.0

Q ss_pred             EEEeeCCCeEEEEeCCCCeeEEEeCCcc-------------------------ccCCccceEEEEEeCCCCeEEEEecCC
Q 024451           62 LITSSGDQTCVLWDITTGLRTSVFGGEF-------------------------QSGHTADVLSVSISGSNSRMFVSGSCD  116 (267)
Q Consensus        62 l~s~~~d~~v~iwd~~~~~~~~~~~~~~-------------------------~~~~~~~i~~~~~~~~~~~~~~s~~~d  116 (267)
                      ++|++.+|.|++|++.+++.+..++...                         ...|..........+....++++...+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            5578899999999999887665543210                         001222233332333333455677788


Q ss_pred             CeEEEEeCCCcccceEEee-ccccceeEEEEecCCC--EEEEeeCCC-----------------cEEEEeCCCCeeeEEE
Q 024451          117 STARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGN--RFGTGSDDG-----------------TCRLFDIRTGHQLQVY  176 (267)
Q Consensus       117 ~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~--~l~~~~~d~-----------------~i~iwd~~~~~~~~~~  176 (267)
                      ..|.++|+++.. ....+. .+....+.++|+|+++  |++..+++.                 .+..+|..+.+.....
T Consensus        94 ~rVavIDl~t~k-~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          94 TRVARIRLDIMK-TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TEEEEEETTTTE-EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CEEEEEECCCCc-EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            899999997543 333332 4567789999999988  555554432                 2345676665443322


Q ss_pred             EeecCCCCCCcEEEEEEccCCCEEEEEEeCC-----------------------------------------eEEEEeCC
Q 024451          177 YQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----------------------------------------DCYVWDTL  215 (267)
Q Consensus       177 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-----------------------------------------~i~i~d~~  215 (267)
                      .-.      .....+.|+|+|+++++.+.+.                                         .+.+++..
T Consensus       173 ~v~------~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~  246 (441)
T d1qnia2         173 IVD------GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG  246 (441)
T ss_dssp             EES------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS
T ss_pred             ecC------CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc
Confidence            211      1356788999999998876542                                         22222222


Q ss_pred             ccceeeecccccCCccceEEEEEECCCCCeE-EEeECCCcEEEEecCce
Q 024451          216 LAKVVLNLGSLQNSHEGRITCLGLSADGSAL-CTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~sgs~dg~i~~w~~~~~  263 (267)
                      ..+.+..+    ..+.. -..+.++|||+++ +++..|++|.+|++..+
T Consensus       247 ~~~v~~~I----Pvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         247 ESEFTRYI----PVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             SCSSEEEE----CCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred             CCceEEEE----eCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence            22222111    11222 3568999999987 46778999999997543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=4.4e-08  Score=74.34  Aligned_cols=214  Identities=14%  Similarity=0.116  Sum_probs=119.3

Q ss_pred             ceeeCCCCCeEEEccCCC---eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC--
Q 024451            2 TCAFSPTGQSVACGGLDS---VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--   76 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~~d~---~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~--   76 (267)
                      .-+|||||+.||-...+.   .+.+.+....        ....+..+........|+|++..+++....++...++..  
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRSALVIQTLANG--------AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTC--------CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             eeEECCCCCEEEEEEeeccCcceeeeecccC--------ceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            457999999998654332   2333333221        223344566777888999988765555544444333332  


Q ss_pred             CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEe
Q 024451           77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG  156 (267)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  156 (267)
                      .........      ..........++......+.+...++...+|...........+..+........|+|+++.++..
T Consensus       115 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~  188 (269)
T d2hqsa1         115 ASGQIRQVT------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV  188 (269)
T ss_dssp             TTCCEEECC------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEE
T ss_pred             ccccceeee------eccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEE
Confidence            222222111      11222233345545555666666666544443322223334444455667788999999988876


Q ss_pred             eCC-Cc--EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC---CeEEEEeCCccceeeecccccCCc
Q 024451          157 SDD-GT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSH  230 (267)
Q Consensus       157 ~~d-~~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~  230 (267)
                      +.+ +.  +.+.|...+..  ....     .........|||+|+.|+-.+..   ..|+++++....... +    ...
T Consensus       189 ~~~~~~~~i~~~~~~~~~~--~~~~-----~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-l----t~~  256 (269)
T d2hqsa1         189 SSNGGQQHIAKQDLATGGV--QVLS-----STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-L----PAT  256 (269)
T ss_dssp             EECSSCEEEEEEETTTCCE--EECC-----CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-C----CCS
T ss_pred             eecCCceeeeEeecccccc--eEee-----cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-E----eCC
Confidence            644 34  44444443322  1111     11234667899999988765543   478889986554332 2    234


Q ss_pred             cceEEEEEECC
Q 024451          231 EGRITCLGLSA  241 (267)
Q Consensus       231 ~~~v~~~~~~p  241 (267)
                      .+.+...+|||
T Consensus       257 ~g~~~~p~WSP  267 (269)
T d2hqsa1         257 DGQVKFPAWSP  267 (269)
T ss_dssp             SSEEEEEEECC
T ss_pred             CCcEEeEEeCC
Confidence            56778889998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.11  E-value=1.4e-07  Score=75.31  Aligned_cols=166  Identities=11%  Similarity=0.117  Sum_probs=98.1

Q ss_pred             ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce--EEee--ccccceeEEEEecCCCEEEEee-CCCcEEEEeCCCC
Q 024451           96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV--RTFH--GHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTG  170 (267)
Q Consensus        96 ~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~--~~~~--~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~  170 (267)
                      .+.++.++|.+..++++......|.+|+........  ....  ........+.|+|+++++.+.. .+++|.+|+...+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            467899997665566555555678888754332211  1111  2234578899999999886555 6789999998765


Q ss_pred             eeeEEEEeec---C-----------CCCCCcEEEEEEccCCCEEEEEEe-C-----CeEEEEeCCccceeeecccc--cC
Q 024451          171 HQLQVYYQQH---G-----------ENEIPHVTSIAFSISGRLLFAGYS-N-----GDCYVWDTLLAKVVLNLGSL--QN  228 (267)
Q Consensus       171 ~~~~~~~~~~---~-----------~~~~~~v~~~~~s~~~~~l~~g~~-d-----g~i~i~d~~~~~~~~~~~~~--~~  228 (267)
                      +.........   .           .........+.++|+|++|+++.. +     +.|..|+......+......  ..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            4332211100   0           001113567889999999988753 1     23666665432211111000  01


Q ss_pred             CccceEEEEEECC-CCCeEEEe-ECCCcEEEEecC
Q 024451          229 SHEGRITCLGLSA-DGSALCTG-SWDTNLKIWAFG  261 (267)
Q Consensus       229 ~~~~~v~~~~~~p-~~~~l~sg-s~dg~i~~w~~~  261 (267)
                      .....-..++++| +|++|+.+ ..++.|.+|+++
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence            1222346688998 79987655 568999999764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.11  E-value=5.2e-08  Score=75.68  Aligned_cols=226  Identities=11%  Similarity=0.081  Sum_probs=138.2

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC--e
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--L   80 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~   80 (267)
                      ++++|||+++++...+++|..|+...      .   ...+......+.+++|.|++. ++++...++.+..|+....  .
T Consensus        33 iAv~pdG~l~vt~~~~~~I~~i~p~g------~---~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          33 LASAPDGTIFVTNHEVGEIVSITPDG------N---QQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTC------C---EEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSC
T ss_pred             EEECCCCCEEEEeCCCCEEEEEeCCC------C---EEEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccccc
Confidence            68899999999999999988887432      1   122334456788999999764 6777777778877776532  1


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec-------c--ccceeEEEEecCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-------H--EGDVNTVKFFPDGN  151 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-------~--~~~i~~~~~~~~~~  151 (267)
                      ......    .......+.+.+.+ +++++++...++.+..++.......+.....       +  ......+.+.. +.
T Consensus       103 ~~~~~~----~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~  176 (302)
T d2p4oa1         103 VETLLT----LPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NF  176 (302)
T ss_dssp             EEEEEE----CTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TE
T ss_pred             eeeccc----cCCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cc
Confidence            111111    12234466777775 5678888888888888886543221111111       1  12234555543 33


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEE--EEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCC
Q 024451          152 RFGTGSDDGTCRLFDIRTGHQLQV--YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS  229 (267)
Q Consensus       152 ~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~  229 (267)
                      .+++.+..+.|..++.........  ....     ......++++++|++.++...++.|..++........  ..... 
T Consensus       177 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~--~~~~~-  248 (302)
T d2p4oa1         177 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTII--AQAEQ-  248 (302)
T ss_dssp             EEEEETTTTEEEEEEBCTTSCBCCCEEEEE-----SCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEE--ECGGG-
T ss_pred             eeeecCCCCeEEeccccccccccccccccC-----CCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEE--EecCC-
Confidence            455666788888888765432211  1111     1124568999999988888888999999865332211  11111 


Q ss_pred             ccceEEEEEE---CCCCCeEEEeECC
Q 024451          230 HEGRITCLGL---SADGSALCTGSWD  252 (267)
Q Consensus       230 ~~~~v~~~~~---~p~~~~l~sgs~d  252 (267)
                      .-...++++|   +||++.|..++..
T Consensus       249 ~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         249 GVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCceEEEEcCCCCCCCEEEEECCC
Confidence            2234688999   7788888766544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.09  E-value=6.1e-07  Score=69.89  Aligned_cols=242  Identities=9%  Similarity=0.082  Sum_probs=137.7

Q ss_pred             eeeCCCCCeEEEccC-------CCeEEEeecCCCCCCCCCCcccc--cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEE
Q 024451            3 CAFSPTGQSVACGGL-------DSVCSIFNLNSPTDKDGNLPVSR--MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL   73 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~-------d~~v~~w~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~i   73 (267)
                      .+|.|+|+++++...       +++|..||.....     .....  ....-.+.-..+.|.+++. .++.+...+.|..
T Consensus        23 pa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~-----~~~~~~~~~~~~~g~P~Gl~~~~dg~-~l~vad~~~~i~~   96 (314)
T d1pjxa_          23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-----KTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADMRLGLLV   96 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-----EEEEECCEETTEECCEEEEEECSSSS-EEEEEETTTEEEE
T ss_pred             eEEeCCCCEEEEECccccccccCCEEEEEECCCCc-----EEEEECCccccCCCcceeEEEeCCCC-EEEEEECCCeEEE
Confidence            468999998876443       4567777765321     11110  0111122345688888764 5666666677888


Q ss_pred             EeCCCCeeEEEeCCccccCC-ccceEEEEEeCCCCeEEEEecC---------------CCeEEEEeCCCcccceEEeecc
Q 024451           74 WDITTGLRTSVFGGEFQSGH-TADVLSVSISGSNSRMFVSGSC---------------DSTARLWDTRVASRAVRTFHGH  137 (267)
Q Consensus        74 wd~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~s~~~---------------d~~i~iwd~~~~~~~~~~~~~~  137 (267)
                      .+.+...... +... ..+. -...+.+.+.+ +++++++...               +|.|..++..  .+ ...+...
T Consensus        97 ~~~~g~~~~~-~~~~-~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~-~~~~~~~  170 (314)
T d1pjxa_          97 VQTDGTFEEI-AKKD-SEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQ-MIQVDTA  170 (314)
T ss_dssp             EETTSCEEEC-CSBC-TTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SC-EEEEEEE
T ss_pred             EeCCCcEEEE-Eecc-ccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeec--Cc-eeEeeCC
Confidence            8877654322 1111 0111 11246677775 4566666321               2334444332  22 2222222


Q ss_pred             ccceeEEEEecCCC-----EEEEeeCCCcEEEEeCCCCeeeEE--EEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEE
Q 024451          138 EGDVNTVKFFPDGN-----RFGTGSDDGTCRLFDIRTGHQLQV--YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY  210 (267)
Q Consensus       138 ~~~i~~~~~~~~~~-----~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~  210 (267)
                      ...-+.++|+|+++     ++++-+..+.|..||+.....+..  .............-.++++.+|++.++....+.|.
T Consensus       171 ~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~  250 (314)
T d1pjxa_         171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence            33346789998765     455557788899998764433221  11111111222356789999999988888899999


Q ss_pred             EEeCCccceeeecccccCCccceEEEEEECCCCCe-EEEeECCCcEEEEec
Q 024451          211 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA-LCTGSWDTNLKIWAF  260 (267)
Q Consensus       211 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~sgs~dg~i~~w~~  260 (267)
                      .||....+....+.    ......++++|.|+++. +++.+.+|+|.-.++
T Consensus       251 ~~dp~~g~~~~~i~----~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         251 VFGPDGGQPKMRIR----CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EECTTCBSCSEEEE----CSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             EEeCCCCEEEEEEE----CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            99977655433221    12345788999999974 466666777776654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.08  E-value=4.3e-10  Score=93.12  Aligned_cols=151  Identities=12%  Similarity=0.115  Sum_probs=101.0

Q ss_pred             EEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe-----eccccceeEEEEecCCCEEEEeeC---------CCcEEE
Q 024451           99 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-----HGHEGDVNTVKFFPDGNRFGTGSD---------DGTCRL  164 (267)
Q Consensus        99 ~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~---------d~~i~i  164 (267)
                      ++.|.+ +++++ . ..|+.+.+||+..... ...+     ..|...|.++.|+|||++|+.++.         ++.+.+
T Consensus        21 ~~~W~~-d~~~~-~-~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWIS-DHEYL-Y-KQENNILVFNAEYGNS-SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECS-SSEEE-E-ESSSCEEEEETTTCCE-EEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCC-CCEEE-E-EcCCcEEEEECCCCCE-EEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence            455664 34443 3 3467899999875443 2222     345577999999999999988754         467889


Q ss_pred             EeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccC--------------Cc
Q 024451          165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN--------------SH  230 (267)
Q Consensus       165 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~--------------~~  230 (267)
                      ||+.+++...      .......+..+.|||+|+.+|.. .++.+++|+...++..........              ..
T Consensus        97 ~d~~~~~~~~------l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~  169 (470)
T d2bgra1          97 YDLNKRQLIT------EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (470)
T ss_dssp             EETTTTEECC------SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             EECCCCcccc------cccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeee
Confidence            9999876421      12233468899999999999985 678999999876654432211000              01


Q ss_pred             cceEEEEEECCCCCeEEEeECCCc-EEEEec
Q 024451          231 EGRITCLGLSADGSALCTGSWDTN-LKIWAF  260 (267)
Q Consensus       231 ~~~v~~~~~~p~~~~l~sgs~dg~-i~~w~~  260 (267)
                      .+....+.|||||++||....|.+ +..|.+
T Consensus       170 ~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             cCCccccEECCCCCccceeEecCCcCceEEE
Confidence            223456889999999999877654 555543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.07  E-value=1.4e-07  Score=71.48  Aligned_cols=233  Identities=11%  Similarity=0.054  Sum_probs=137.3

Q ss_pred             ceeeCCCCCeEEE-ccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVAC-GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~-~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      .++++++|+..++ .+..+.+..++.....      .......+. .....+++.+++ .++++....+.+++++..+..
T Consensus        18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~------~~~~~~~~~-~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~~   89 (260)
T d1rwia_          18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTG------TTVLPFNGL-YQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQ   89 (260)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEEC----C------EEECCCCSC-CSCCCEEECTTC-CEEEEETTTEEEEECTTCSCC
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCce------EEEeccCCc-cCceEEEEcCCC-CEEEeeeeeceeeeeeeccce
Confidence            4678999987665 4556777777654321      011111111 123456777765 455555556667666554443


Q ss_pred             eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451           81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG  160 (267)
Q Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  160 (267)
                      .....      ........+++.+ +++++++...+..+..++........... .-......+++.|+++.+++...++
T Consensus        90 ~~~~~------~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          90 TVLPF------DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             EECCC------CSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCC-CSCCSCCEEEECTTCCEEEEEGGGT
T ss_pred             eeeee------eeeeecccccccc-cceeEeeccccccccccccccceeeeeee-cccCCcceeeecCCCCEeeeccccc
Confidence            22111      1123456777775 45666666666667777654322111111 1123457899999999888888888


Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      .|..+|.+...... +    ..........++++++|+++++-..++.|..++....... ...   ...-..-..|+++
T Consensus       162 ~i~~~d~~~~~~~~-~----~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~---~~~~~~P~~i~~d  232 (260)
T d1rwia_         162 RVVKLEAESNNQVV-L----PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP---FTGLNTPLAVAVD  232 (260)
T ss_dssp             EEEEECTTTCCEEE-C----CCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECC---CCSCCCEEEEEEC
T ss_pred             cccccccccceeee-e----eccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEc---cCCCCCeEEEEEe
Confidence            99999987543321 1    1122234688999999998888888888888875433211 110   1122345789999


Q ss_pred             CCCCeEEEeECCCcEEEEe
Q 024451          241 ADGSALCTGSWDTNLKIWA  259 (267)
Q Consensus       241 p~~~~l~sgs~dg~i~~w~  259 (267)
                      ++|+++++-..+++|+.++
T Consensus       233 ~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         233 SDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEEC
T ss_pred             CCCCEEEEECCCCEEEEEe
Confidence            9999888766677776654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.06  E-value=8.6e-10  Score=88.27  Aligned_cols=202  Identities=7%  Similarity=-0.007  Sum_probs=113.5

Q ss_pred             ceeeCCCCCeEEEcc-CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451            2 TCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL   80 (267)
Q Consensus         2 ~~~~~~~g~~l~~~~-~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   80 (267)
                      .++|+|||++|+.+. .++.+.+||+....       ..+.+..+....    +.|.+...+++.+.|+++..|++....
T Consensus       128 ~~a~SpDGk~l~va~~~~~~v~~~d~~~~~-------~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~  196 (368)
T d1mdah_         128 IIGNCASSACLLFFLFGSSAAAGLSVPGAS-------DDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             SEEECTTSSCEEEEECSSSCEEEEEETTTE-------EEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCCCc-------EeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCc
Confidence            367999999887765 57999999987532       222222222211    123334567778889998888876543


Q ss_pred             eEEEe-CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce-EEeec----------cccceeEEEEec
Q 024451           81 RTSVF-GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHG----------HEGDVNTVKFFP  148 (267)
Q Consensus        81 ~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-~~~~~----------~~~~i~~~~~~~  148 (267)
                      ..... .......+...+....+.+ ....+.+.  ++.+.+++........ .....          .......++++|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~  273 (368)
T d1mdah_         197 AAAGIVGAQCTGAQNCSSQAAQANY-PGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK  273 (368)
T ss_dssp             CCCEECCCCSCTTSCBCSCCEEETT-TTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred             eeeeeeecccccccccceeeccccc-CcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC
Confidence            22111 1111122333333344433 23333322  3344444443211100 00000          112234578888


Q ss_pred             CCCEEEEeeCC---------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-E-EEEEEeCCeEEEEeCCcc
Q 024451          149 DGNRFGTGSDD---------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-L-LFAGYSNGDCYVWDTLLA  217 (267)
Q Consensus       149 ~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~-l~~g~~dg~i~i~d~~~~  217 (267)
                      +++.++....+         ..|.+||..+++.+..+..      ...+.+++|+|+|+ + ++++..++.|++||..++
T Consensus       274 ~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~------~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE------EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             CCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC------CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            88776554322         3599999999876543321      12467899999997 3 456667899999999998


Q ss_pred             ceeeec
Q 024451          218 KVVLNL  223 (267)
Q Consensus       218 ~~~~~~  223 (267)
                      +.+..+
T Consensus       348 k~~~~i  353 (368)
T d1mdah_         348 QDQSSV  353 (368)
T ss_dssp             EEEEEC
T ss_pred             CEEEEE
Confidence            877654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.02  E-value=2.6e-09  Score=88.27  Aligned_cols=149  Identities=10%  Similarity=0.114  Sum_probs=105.8

Q ss_pred             EEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEec---------CCCeEEE
Q 024451           51 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS---------CDSTARL  121 (267)
Q Consensus        51 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~---------~d~~i~i  121 (267)
                      .+.|.+++ .++.  ..|+.+.+||+.++.....+.......|...+.++.|+|. ++.++.++         .++.+.+
T Consensus        21 ~~~W~~d~-~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpD-g~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDH-EYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSS-EEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTT-SSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCCCC-EEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCC-CCEEEEEECCcceeeeccCceEEE
Confidence            46788864 5554  3578899999999987776665555667788999999975 55556553         3567889


Q ss_pred             EeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCC-------------CCCCcE
Q 024451          122 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------------NEIPHV  188 (267)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~v  188 (267)
                      ||+...  ....+..|...+..+.|+|+|+.+|.. .++.+.+|+..+++...........             ......
T Consensus        97 ~d~~~~--~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          97 YDLNKR--QLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             EETTTT--EECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EECCCC--cccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence            998743  355677788889999999999999985 5678999999887654322111000             011223


Q ss_pred             EEEEEccCCCEEEEEEeC
Q 024451          189 TSIAFSISGRLLFAGYSN  206 (267)
Q Consensus       189 ~~~~~s~~~~~l~~g~~d  206 (267)
                      ..+.|||+|+.|+....|
T Consensus       174 ~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         174 SALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             BCEEECTTSSEEEEEEEE
T ss_pred             cccEECCCCCccceeEec
Confidence            567899999999987654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.87  E-value=1.4e-06  Score=69.24  Aligned_cols=169  Identities=9%  Similarity=0.004  Sum_probs=98.9

Q ss_pred             eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC
Q 024451           47 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV  126 (267)
Q Consensus        47 ~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~  126 (267)
                      ..++++.|+|++...+++......|.+|+........................+.+++....++++...++.|.+|+...
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            34789999998764444444456888887654322111111111122345677889987777778888899999998754


Q ss_pred             cccc-eEEee-----------------ccccceeEEEEecCCCEEEEeeC------CCcEEEEeCCCCeeeEEE-EeecC
Q 024451          127 ASRA-VRTFH-----------------GHEGDVNTVKFFPDGNRFGTGSD------DGTCRLFDIRTGHQLQVY-YQQHG  181 (267)
Q Consensus       127 ~~~~-~~~~~-----------------~~~~~i~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~-~~~~~  181 (267)
                      .... .....                 .+......+.++|+|++++++..      ...|..|++.....+... .....
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            3211 11100                 11122457899999999877642      123777776543322211 11111


Q ss_pred             CCCCCcEEEEEEcc-CCCEEEEEE-eCCeEEEEeCC
Q 024451          182 ENEIPHVTSIAFSI-SGRLLFAGY-SNGDCYVWDTL  215 (267)
Q Consensus       182 ~~~~~~v~~~~~s~-~~~~l~~g~-~dg~i~i~d~~  215 (267)
                      .........++++| +|++|+++. .++.|.+|+..
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence            11223456788998 789887765 67899999753

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.79  E-value=1.4e-05  Score=62.12  Aligned_cols=234  Identities=11%  Similarity=0.034  Sum_probs=133.4

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC----CCeEEEEeCCC
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG----DQTCVLWDITT   78 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----d~~v~iwd~~~   78 (267)
                      .+|.++|+++++--.++.|..|+.....       ..............+++.+++. ++++...    .+.+...+..+
T Consensus        45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~-------~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          45 LNFDRQGQLFLLDVFEGNIFKINPETKE-------IKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCC-------EEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTS
T ss_pred             CEECCCCCEEEEECCCCEEEEEECCCCe-------EEEEEeCCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCC
Confidence            4789999988887788888888754321       1222223334567888988764 4444322    22344444444


Q ss_pred             CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC------CCeEEEEeCCCcccceEEeeccccceeEEEEecCCCE
Q 024451           79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR  152 (267)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  152 (267)
                      .........   ..-....+.+.+.+ +++++++...      .+.+..++..  ...+..+...-...+.++|+|+++.
T Consensus       117 ~~~~~~~~~---~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~d--g~~~~~~~~~~~~pnGia~s~dg~~  190 (319)
T d2dg1a1         117 DNLQDIIED---LSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPD--FRTVTPIIQNISVANGIALSTDEKV  190 (319)
T ss_dssp             CSCEEEECS---SSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTT--SCCEEEEEEEESSEEEEEECTTSSE
T ss_pred             ceeeeeccC---CCcccCCcceeEEe-ccceeecccccccccCcceeEEEecc--cceeEEEeeccceeeeeeeccccce
Confidence            332222211   01123456677775 4566665322      1234444432  2223333222334578999999986


Q ss_pred             E-EEeeCCCcEEEEeCCCCe-eeEEEEe--ecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccc--
Q 024451          153 F-GTGSDDGTCRLFDIRTGH-QLQVYYQ--QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL--  226 (267)
Q Consensus       153 l-~~~~~d~~i~iwd~~~~~-~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~--  226 (267)
                      | ++-+..+.|..||++... .......  ..........-.++++.+|++.++...++.|.+||. .++.+..+...  
T Consensus       191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~  269 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR  269 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred             EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCc
Confidence            5 555678899999976432 1111100  111111223567999999999998889999999996 45554433211  


Q ss_pred             cCCccceEEEEEECCCCCeEEEeEC
Q 024451          227 QNSHEGRITCLGLSADGSALCTGSW  251 (267)
Q Consensus       227 ~~~~~~~v~~~~~~p~~~~l~sgs~  251 (267)
                      ...+...+++++|.|++..+++.+.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         270 DEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             GGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCCcCceeeeEEEeCCCCEEEEEcC
Confidence            1234446789999998877766554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1.1e-05  Score=60.53  Aligned_cols=202  Identities=16%  Similarity=0.155  Sum_probs=110.3

Q ss_pred             CCeeeEEEEEEecCCCeeEEEeeCCC--eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEE
Q 024451           44 GHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL  121 (267)
Q Consensus        44 ~h~~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~i  121 (267)
                      .+...+.+-+|+|+++.+.++....+  .+.+.+...+......      .+........+++....++.....++...+
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~spdg~~i~~~~~~~~~~~~  109 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA------SFPRHNGAPAFSPDGSKLAFALSKTGSLNL  109 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE------CCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe------eeecccccceecCCCCeeeEeeecCCccce
Confidence            44566778899999875444444443  3555666665543332      244556677888766665555544544333


Q ss_pred             EeCCCcccceEEeeccccceeEEEEecCCCEEE-EeeCCCc--EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC
Q 024451          122 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDDGT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR  198 (267)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  198 (267)
                      +.......................++++++.+. +...++.  |.+.++........      ...........|+|++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~spdg~  183 (269)
T d2hqsa1         110 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI------TWEGSQNQDADVSSDGK  183 (269)
T ss_dssp             EEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC------CCSSSEEEEEEECTTSS
T ss_pred             eecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceee------ecccccccccccccccc
Confidence            332222222222222333344556677666544 3344554  44455554432211      11223456778999999


Q ss_pred             EEEEEEeCC---eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC---CcEEEEecCce
Q 024451          199 LLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD---TNLKIWAFGGY  263 (267)
Q Consensus       199 ~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d---g~i~~w~~~~~  263 (267)
                      .++..+.++   .+.+.|........      ..+........|+|||+.|+-.+..   ..|.++++.|-
T Consensus       184 ~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~  248 (269)
T d2hqsa1         184 FMVMVSSNGGQQHIAKQDLATGGVQV------LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  248 (269)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEE------CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             eeEEEeecCCceeeeEeecccccceE------eecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            988876653   44444544332211      1233345667899999998755543   35677777654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.78  E-value=2.7e-06  Score=65.62  Aligned_cols=204  Identities=11%  Similarity=0.006  Sum_probs=129.8

Q ss_pred             eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc
Q 024451           48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA  127 (267)
Q Consensus        48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~  127 (267)
                      .+..+++.|++ +++++...+++|..|+........ .      .....+..+++.+ +++++++...++.+..++....
T Consensus        29 ~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g~~~~~-~------~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          29 FLENLASAPDG-TIFVTNHEVGEIVSITPDGNQQIH-A------TVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTTCCEEEE-E------ECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECCCC-CEEEEeCCCCEEEEEeCCCCEEEE-E------cCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccc
Confidence            46678999976 578888889999888866443221 1      2335678888886 5678888877778877765432


Q ss_pred             ccceEEee--ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC-----CCCCCcEEEEEEccCCCEE
Q 024451          128 SRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-----ENEIPHVTSIAFSISGRLL  200 (267)
Q Consensus       128 ~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l  200 (267)
                      ......+.  ......+.+.+.++++++++.+.++.+..+|...+...........     .........+.++. +..+
T Consensus       100 ~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~  178 (302)
T d2p4oa1         100 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLY  178 (302)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEE
T ss_pred             ccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Ccee
Confidence            22222222  2345578899999999999888889999999877643322211110     11112345566553 3455


Q ss_pred             EEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451          201 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY  263 (267)
Q Consensus       201 ~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~  263 (267)
                      ++.+.++.|+.++.............  ........++++++|+++++...++.|..++..+-
T Consensus       179 ~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         179 VSNTEKMLLLRIPVDSTDKPGEPEIF--VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEE--EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             eecCCCCeEEeccccccccccccccc--cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            55667788888886543322211100  11223456999999998888888899998876653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.68  E-value=1e-05  Score=60.92  Aligned_cols=197  Identities=9%  Similarity=0.011  Sum_probs=120.1

Q ss_pred             EEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc
Q 024451           49 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS  128 (267)
Q Consensus        49 v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~  128 (267)
                      -+.+++.+++.-+++..+..+.+..++............     -......+++++ +++++++....+.+++++... .
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~-~   88 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN-----GLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSN-N   88 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCC-----SCCSCCCEEECT-TCCEEEEETTTEEEEECTTCS-C
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccC-----CccCceEEEEcC-CCCEEEeeeeeceeeeeeecc-c
Confidence            467888887765555556667777776654432222111     111234566765 456777777777777765432 2


Q ss_pred             cceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCe
Q 024451          129 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD  208 (267)
Q Consensus       129 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~  208 (267)
                      ....... .......+++.++++++++-..+..+..++.......  ....   ........++++++++.+++...++.
T Consensus        89 ~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~--~~~~---~~~~~p~~i~~~~~g~~~v~~~~~~~  162 (260)
T d1rwia_          89 QTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT--VLPF---TGLNDPDGVAVDNSGNVYVTDTDNNR  162 (260)
T ss_dssp             CEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE--ECCC---CSCCSCCEEEECTTCCEEEEEGGGTE
T ss_pred             eeeeeee-eeeecccccccccceeEeeccccccccccccccceee--eeee---cccCCcceeeecCCCCEeeecccccc
Confidence            1121111 2245688999999998887766777777776543321  1111   11223568899999998888888899


Q ss_pred             EEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          209 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       209 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      |..+|..........    .........+++.++|+++++....+.|..++.++
T Consensus       163 i~~~d~~~~~~~~~~----~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         163 VVKLEAESNNQVVLP----FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             EEEECTTTCCEEECC----CSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             ccccccccceeeeee----ccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            999997654322111    12223457899999999988887788888776543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.43  E-value=0.00015  Score=54.86  Aligned_cols=203  Identities=13%  Similarity=0.166  Sum_probs=125.8

Q ss_pred             EEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccc-cCCccceEEEEEeCCCCeEEE-EecCCCeEEEEeCCC
Q 024451           49 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ-SGHTADVLSVSISGSNSRMFV-SGSCDSTARLWDTRV  126 (267)
Q Consensus        49 v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~-s~~~d~~i~iwd~~~  126 (267)
                      -..+++.|++ +++++-...+.|++||.+ +..+..+..... .+.......+.+....+..++ ..+.+..|..++.. 
T Consensus        25 P~gvavd~dg-~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          25 PSGVAVNAQN-DIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             EEEEEECTTC-CEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             ccEEEEcCCC-CEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            4567888865 455665667889999976 443444422111 111122344555544444443 34556678787753 


Q ss_pred             cccceEEee-ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe
Q 024451          127 ASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS  205 (267)
Q Consensus       127 ~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~  205 (267)
                       ......+. ........+++.++++++++....+.+.+++.. ++.+..+-.   .........++++++++.+++...
T Consensus       102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~---~~~~~~~~~i~~d~~g~i~v~d~~  176 (279)
T d1q7fa_         102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGC---SKHLEFPNGVVVNDKQEIFISDNR  176 (279)
T ss_dssp             -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC---TTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             -ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccc---cccccccceeeeccceeEEeeecc
Confidence             23344332 233456788999999988887777888888864 343333211   223345788899999999888888


Q ss_pred             CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC-CCcEEEEecCc
Q 024451          206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKIWAFGG  262 (267)
Q Consensus       206 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-dg~i~~w~~~~  262 (267)
                      .+.|++||.. ++.+..+..  .........+++.|+|+++++-+. ++.|.+|+..|
T Consensus       177 ~~~V~~~d~~-G~~~~~~g~--~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G  231 (279)
T d1q7fa_         177 AHCVKVFNYE-GQYLRQIGG--EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG  231 (279)
T ss_dssp             GTEEEEEETT-CCEEEEESC--TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred             ccceeeeecC-Cceeeeecc--cccccCCcccccccCCeEEEEECCCCcEEEEECCCC
Confidence            9999999964 344433321  122334578999999998876443 45688887654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.34  E-value=0.00029  Score=54.28  Aligned_cols=197  Identities=10%  Similarity=0.127  Sum_probs=112.0

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe-eeEEEEEEecCCCeeEEEeeC--------------
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSG--------------   67 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~--------------   67 (267)
                      ++|.++|+.|+.+...+.+...+.......    .......+.. .....+.+.+++. +.++-..              
T Consensus        76 l~~~~dg~~l~vad~~~~i~~~~~~g~~~~----~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          76 CQCDRDANQLFVADMRLGLLVVQTDGTFEE----IAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEECSSSSEEEEEETTTEEEEEETTSCEEE----CCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSS
T ss_pred             EEEeCCCCEEEEEECCCeEEEEeCCCcEEE----EEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceecc
Confidence            678899987777777677777776432100    0000111111 1245677778654 4444211              


Q ss_pred             -CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCC----eEEEEecCCCeEEEEeCCCcccce-----EEeec-
Q 024451           68 -DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS----RMFVSGSCDSTARLWDTRVASRAV-----RTFHG-  136 (267)
Q Consensus        68 -d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~s~~~d~~i~iwd~~~~~~~~-----~~~~~-  136 (267)
                       ++.|..++.+. .......      .-...+-+++++..+    .++++.+..+.|..|++.......     ..+.+ 
T Consensus       151 ~~G~v~~~~~dg-~~~~~~~------~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~  223 (314)
T d1pjxa_         151 KFGSIYCFTTDG-QMIQVDT------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT  223 (314)
T ss_dssp             SCEEEEEECTTS-CEEEEEE------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             CCceEEEEeecC-ceeEeeC------CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccc
Confidence             22343333322 1111110      111234566765433    466777788889888865322211     11111 


Q ss_pred             cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE-EEEEeCCeEEEEeCC
Q 024451          137 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTL  215 (267)
Q Consensus       137 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i~i~d~~  215 (267)
                      +......+++.++|++.++....+.|.+||.+.++....+...     ....++++|.++++.| ++.+.+|.|+.+++.
T Consensus       224 ~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p-----~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-----FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-----SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             ccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECC-----CCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            1223457899999999888888899999998876654433211     1357899999998755 555667888888865


Q ss_pred             c
Q 024451          216 L  216 (267)
Q Consensus       216 ~  216 (267)
                      .
T Consensus       299 ~  299 (314)
T d1pjxa_         299 R  299 (314)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=0.00016  Score=58.98  Aligned_cols=232  Identities=13%  Similarity=0.068  Sum_probs=116.0

Q ss_pred             eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEe---------eCCCeEEE
Q 024451            3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS---------SGDQTCVL   73 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~---------~~d~~v~i   73 (267)
                      ..|.+++.++. -..||.+.+||+......    .+.....-..-.+....|+|++. +++.+         +..+...+
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~SpD~~-~vl~~~~~~~~~r~s~~~~~~i   95 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTST----VLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYVL   95 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCE----EEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEEE
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEE----EEEcCccccccccceeEECCCCC-eEEEEEcccceeEeeccccEEE
Confidence            35777776554 456788999998753311    01100011112345567899875 44433         33567889


Q ss_pred             EeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-ccccc------------
Q 024451           74 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGD------------  140 (267)
Q Consensus        74 wd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~------------  140 (267)
                      ||+.++.........   .....+....|+|.+..+ +-.. ++.|.+.+..... .++... +..+.            
T Consensus        96 ~d~~~~~~~~l~~~~---~~~~~l~~~~wSPDG~~i-afv~-~~nl~~~~~~~~~-~~~lt~~g~~~~i~nG~~d~vyee  169 (465)
T d1xfda1          96 SKIPHGDPQSLDPPE---VSNAKLQYAGWGPKGQQL-IFIF-ENNIYYCAHVGKQ-AIRVVSTGKEGVIYNGLSDWLYEE  169 (465)
T ss_dssp             EESSSCCCEECCCTT---CCSCCCSBCCBCSSTTCE-EEEE-TTEEEEESSSSSC-CEEEECCCBTTTEEEEECCHHHHH
T ss_pred             EEccCCceeeccCcc---CCccccceeeeccCCceE-EEEe-cceEEEEecCCCc-eEEEecccCcceeeccccchhhhh
Confidence            999887654332211   122334445677765544 3322 4567777654322 222211 11111            


Q ss_pred             -----eeEEEEecCCCEEEEee-CCCcEEEE---------------------------------eCCCCeeeEEEEeec-
Q 024451          141 -----VNTVKFFPDGNRFGTGS-DDGTCRLF---------------------------------DIRTGHQLQVYYQQH-  180 (267)
Q Consensus       141 -----i~~~~~~~~~~~l~~~~-~d~~i~iw---------------------------------d~~~~~~~~~~~~~~-  180 (267)
                           -..+-|+|||++||... .+..+..+                                 |+.++.......... 
T Consensus       170 e~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~  249 (465)
T d1xfda1         170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD  249 (465)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred             hhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCc
Confidence                 13577999999998765 23334333                                 332221110000000 


Q ss_pred             CCCCCCcEEEEEEccCCCEEEEEEeC----CeEEEEeCCccceeeecccccCCc-cceEEEEEECCCCCeE
Q 024451          181 GENEIPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLLAKVVLNLGSLQNSH-EGRITCLGLSADGSAL  246 (267)
Q Consensus       181 ~~~~~~~v~~~~~s~~~~~l~~g~~d----g~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l  246 (267)
                      .......+..+.|++++++++.....    ..+.++|..+++............ +..-....|+|+|+.+
T Consensus       250 ~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             CccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence            00011236778999998876665432    268888887765433221100100 0011235688998854

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.93  E-value=0.0023  Score=49.14  Aligned_cols=199  Identities=11%  Similarity=0.029  Sum_probs=113.9

Q ss_pred             EEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC----CCeEEEEeC
Q 024451           49 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC----DSTARLWDT  124 (267)
Q Consensus        49 v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~----d~~i~iwd~  124 (267)
                      +-.+.|.+++ ++.++-...+.|..|+.+++.....+.     ........+++.+ +++++++...    .+.+...+.
T Consensus        42 lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~~~~~~-----~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          42 LEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFV-----SHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             EEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEE-----CSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECT
T ss_pred             cEeCEECCCC-CEEEEECCCCEEEEEECCCCeEEEEEe-----CCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcC
Confidence            3467888875 456666678889889887764333321     1233456788875 4566665432    223444443


Q ss_pred             CCcccceEEeecc---ccceeEEEEecCCCEEEEeeCC------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc
Q 024451          125 RVASRAVRTFHGH---EGDVNTVKFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI  195 (267)
Q Consensus       125 ~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  195 (267)
                      ..  ........+   ....+.+.+.++|++.++....      +.+..++.... ....+...     ......++|++
T Consensus       115 ~~--~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~-----~~~pnGia~s~  186 (319)
T d2dg1a1         115 NG--DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQN-----ISVANGIALST  186 (319)
T ss_dssp             TS--CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEE-----ESSEEEEEECT
T ss_pred             CC--ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeec-----cceeeeeeecc
Confidence            32  222222222   2346788999999877764321      23444444332 22222221     12357899999


Q ss_pred             CCCEEEE-EEeCCeEEEEeCCccceee----ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          196 SGRLLFA-GYSNGDCYVWDTLLAKVVL----NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       196 ~~~~l~~-g~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      +++.|.. -+..+.|+.||+.......    ............-..+++.++|++.++...++.|.+|+-.|
T Consensus       187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G  258 (319)
T d2dg1a1         187 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  258 (319)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCC
Confidence            9986644 4567899999864321110    00000011112345799999999988888899999998765

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.84  E-value=0.00096  Score=49.63  Aligned_cols=71  Identities=14%  Similarity=0.203  Sum_probs=44.9

Q ss_pred             eeCCC--CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC-----eEEEEeC
Q 024451            4 AFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-----TCVLWDI   76 (267)
Q Consensus         4 ~~~~~--g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-----~v~iwd~   76 (267)
                      ..+||  |+.++-.+. +.|-+.|+....        .+.+..+.+.+....|+|++..+.++...++     .|.+++.
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~--------~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGS--------TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCC--------EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCC--------EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEe
Confidence            35799  999887654 456666775421        2334556677888999998865444443222     3666677


Q ss_pred             CCCeeEE
Q 024451           77 TTGLRTS   83 (267)
Q Consensus        77 ~~~~~~~   83 (267)
                      .++....
T Consensus        76 ~~g~~~~   82 (281)
T d1k32a2          76 ENGEIKR   82 (281)
T ss_dssp             TTTEEEE
T ss_pred             cCCceEE
Confidence            7775544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.74  E-value=0.0045  Score=46.84  Aligned_cols=221  Identities=16%  Similarity=0.156  Sum_probs=124.0

Q ss_pred             eCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451            5 FSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS   83 (267)
Q Consensus         5 ~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~   83 (267)
                      |++ ++.++.+=-..+.|..||.....        ...+ .....+.++.+.+++ .+++ ++.+ -+.++|..+++...
T Consensus        25 wd~~~~~l~wvDi~~~~I~r~d~~~g~--------~~~~-~~~~~~~~i~~~~dg-~l~v-a~~~-gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          25 FDPASGTAWWFNILERELHELHLASGR--------KTVH-ALPFMGSALAKISDS-KQLI-ASDD-GLFLRDTATGVLTL   92 (295)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEETTTTE--------EEEE-ECSSCEEEEEEEETT-EEEE-EETT-EEEEEETTTCCEEE
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCe--------EEEE-ECCCCcEEEEEecCC-CEEE-EEeC-ccEEeecccceeeE
Confidence            444 34444443345667777654321        1111 112346677777754 4444 4554 58889999886544


Q ss_pred             EeCCccccCCccceEEEEEeCCCCeEEEEecC----CCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE-EEeeC
Q 024451           84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSC----DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSD  158 (267)
Q Consensus        84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~  158 (267)
                      ...... ......++.+.+.+ ++++.++...    .+.-.+|.... .+ ...+...-..-+.+.|+++++.+ ++-+.
T Consensus        93 l~~~~~-~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~-g~-~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~  168 (295)
T d2ghsa1          93 HAELES-DLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAK-GK-VTKLFADISIPNSICFSPDGTTGYFVDTK  168 (295)
T ss_dssp             EECSST-TCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEET-TE-EEEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             Eeeeec-CCCcccceeeEECC-CCCEEEEeccccccccceeEeeecC-Cc-EEEEeeccCCcceeeecCCCceEEEeecc
Confidence            432111 11233567787775 4556555321    22334444332 22 22222223345789999998865 45566


Q ss_pred             CCcEEEEeCCCCe-----eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccce
Q 024451          159 DGTCRLFDIRTGH-----QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR  233 (267)
Q Consensus       159 d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  233 (267)
                      .+.|..+++....     ....+..  ..........++++.+|++.++....+.|..||. .++.+..+. ++   ...
T Consensus       169 ~~~I~~~~~d~~~~~~~~~~~~~~~--~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~-lP---~~~  241 (295)
T d2ghsa1         169 VNRLMRVPLDARTGLPTGKAEVFID--STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-VP---GKQ  241 (295)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEE--CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-CS---CSB
T ss_pred             cceeeEeeecccccccccceEEEec--cCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEec-CC---CCc
Confidence            7888888874321     1112221  1122345678899999999999888999999995 455554432 11   235


Q ss_pred             EEEEEEC-CCCCeEEE
Q 024451          234 ITCLGLS-ADGSALCT  248 (267)
Q Consensus       234 v~~~~~~-p~~~~l~s  248 (267)
                      +++++|- ||.+.|..
T Consensus       242 ~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         242 TTCPAFIGPDASRLLV  257 (295)
T ss_dssp             EEEEEEESTTSCEEEE
T ss_pred             eEEEEEeCCCCCEEEE
Confidence            7899995 77666543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00032  Score=57.16  Aligned_cols=144  Identities=15%  Similarity=0.122  Sum_probs=85.7

Q ss_pred             EecCCCeEEEEeCCCcccceEEeec---cccceeEEEEecCCCEEEEee---------CCCcEEEEeCCCCeeeEEEEee
Q 024451          112 SGSCDSTARLWDTRVASRAVRTFHG---HEGDVNTVKFFPDGNRFGTGS---------DDGTCRLFDIRTGHQLQVYYQQ  179 (267)
Q Consensus       112 s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~  179 (267)
                      .-..+|.+.+||+..... ...+..   ....+....|+||+++++...         ..+.+.++|+.++...... . 
T Consensus        32 ~~~~~g~i~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~-~-  108 (465)
T d1xfda1          32 YREQKGTVRLWNVETNTS-TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD-P-  108 (465)
T ss_dssp             CCCSSSCEEEBCGGGCCC-EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC-C-
T ss_pred             EEeCCCcEEEEECCCCCE-EEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeecc-C-
Confidence            345667888998864432 222221   123567888999999887653         3467889999877643221 1 


Q ss_pred             cCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCC--------------ccceEEEEEECCCCCe
Q 024451          180 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS--------------HEGRITCLGLSADGSA  245 (267)
Q Consensus       180 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~--------------~~~~v~~~~~~p~~~~  245 (267)
                       .......+....|||+|+.+|-. .++.|++.+............-...              ..+.-.++.|||||++
T Consensus       109 -~~~~~~~l~~~~wSPDG~~iafv-~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~  186 (465)
T d1xfda1         109 -PEVSNAKLQYAGWGPKGQQLIFI-FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR  186 (465)
T ss_dssp             -TTCCSCCCSBCCBCSSTTCEEEE-ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE
T ss_pred             -ccCCccccceeeeccCCceEEEE-ecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCe
Confidence             11122234567899999998876 4778888887554433221100000              0011246789999999


Q ss_pred             EEEeEC-CCcEEEEec
Q 024451          246 LCTGSW-DTNLKIWAF  260 (267)
Q Consensus       246 l~sgs~-dg~i~~w~~  260 (267)
                      ||.... +..+..+.+
T Consensus       187 iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         187 LAYAAINDSRVPIMEL  202 (465)
T ss_dssp             EEEEEEECTTSCEEEE
T ss_pred             EEEEEecccccceeec
Confidence            998654 344555543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.14  E-value=0.034  Score=43.06  Aligned_cols=237  Identities=11%  Similarity=0.067  Sum_probs=110.4

Q ss_pred             eeeCCCCCeEEEccCC-CeEEEeecCCCCCCC-CCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC------CeEEEE
Q 024451            3 CAFSPTGQSVACGGLD-SVCSIFNLNSPTDKD-GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVLW   74 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~d-~~v~~w~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~v~iw   74 (267)
                      .++.++|++++.|+.+ .++.+||.....-.. ..++..+  ..|     ++...+++ .+++.++.+      ..+.+|
T Consensus        81 ~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r--~~~-----~~~~~~dG-~v~v~GG~~~~~~~~~~v~~y  152 (387)
T d1k3ia3          81 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR--GYQ-----SSATMSDG-RVFTIGGSWSGGVFEKNGEVY  152 (387)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC--SSC-----EEEECTTS-CEEEECCCCCSSSCCCCEEEE
T ss_pred             EEEecCCcEEEeecCCCcceeEecCccCcccccccccccc--ccc-----ceeeecCC-ceeeeccccccccccceeeee
Confidence            4577899999998765 689999976532100 0111111  122     33445555 455555542      358899


Q ss_pred             eCCCCeeEEEeCCcc----ccCCccc----eEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE-Eee----ccccce
Q 024451           75 DITTGLRTSVFGGEF----QSGHTAD----VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFH----GHEGDV  141 (267)
Q Consensus        75 d~~~~~~~~~~~~~~----~~~~~~~----i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~~~----~~~~~i  141 (267)
                      |..+..-...-....    ...+...    -....+...+++++..++..+.+.+++.....-... ...    .+....
T Consensus       153 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (387)
T d1k3ia3         153 SPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM  232 (387)
T ss_dssp             ETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCB
T ss_pred             cCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccc
Confidence            998764332211000    0000000    011122223456677777777777777653211000 000    011111


Q ss_pred             --eEEEEe-cCCCEEEEeeCCC--------cEEEEeCCCCeeeEEEEeecCCC-CCCcEEEEEEccCCCEEEEEEeCC--
Q 024451          142 --NTVKFF-PDGNRFGTGSDDG--------TCRLFDIRTGHQLQVYYQQHGEN-EIPHVTSIAFSISGRLLFAGYSNG--  207 (267)
Q Consensus       142 --~~~~~~-~~~~~l~~~~~d~--------~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg--  207 (267)
                        .++.+. .+++.++.|+...        ...+.+................. ....-.+....+++++++.|+.++  
T Consensus       233 ~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~  312 (387)
T d1k3ia3         233 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI  312 (387)
T ss_dssp             TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred             cccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCc
Confidence              222332 3566777776322        23333332211111111111111 111122444567899998887531  


Q ss_pred             ---------eEEEEeCCccc--eeeecccccCCccceEEEEEECCCCCeEEEeEC
Q 024451          208 ---------DCYVWDTLLAK--VVLNLGSLQNSHEGRITCLGLSADGSALCTGSW  251 (267)
Q Consensus       208 ---------~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~  251 (267)
                               .+.+||..+.+  .+..+......|.    +..+.|||+.|+.|+.
T Consensus       313 ~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs----~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         313 PFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHS----ISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             TTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTE----EEEECTTSCEEEEECC
T ss_pred             cCCCCcEeceEEEEECCCCeEEECCCCCCcccceE----EEEECCCCEEEEEeCC
Confidence                     46789976543  2222211112343    2335799999999884

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.13  E-value=0.03  Score=42.12  Aligned_cols=191  Identities=13%  Similarity=0.086  Sum_probs=114.4

Q ss_pred             EEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE
Q 024451           53 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR  132 (267)
Q Consensus        53 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~  132 (267)
                      .|.+.++.+..+=-..+.|..||..++.... +.      ....+.++.+.+ +++++++ +.+ .+..+|.....  ..
T Consensus        24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~------~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~--~~   91 (295)
T d2ghsa1          24 TFDPASGTAWWFNILERELHELHLASGRKTV-HA------LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGV--LT   91 (295)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE------CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCC--EE
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCeEEE-EE------CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccce--ee
Confidence            4666555555554466789999998875432 21      123456676664 4555554 444 57788876432  22


Q ss_pred             Eeec-----cccceeEEEEecCCCEEEEeeC----CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE
Q 024451          133 TFHG-----HEGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG  203 (267)
Q Consensus       133 ~~~~-----~~~~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g  203 (267)
                      .+..     ....++.+.+.|+|++.++...    .+.-.+|.+..++....... .     .....++|+++++.+...
T Consensus        92 ~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~-----~~~Ng~~~s~d~~~l~~~  165 (295)
T d2ghsa1          92 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-I-----SIPNSICFSPDGTTGYFV  165 (295)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-E-----SSEEEEEECTTSCEEEEE
T ss_pred             EEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-c-----CCcceeeecCCCceEEEe
Confidence            2211     1234788899999987766432    23456777766654333321 1     235788999999866554


Q ss_pred             -EeCCeEEEEeCCccceee-----ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          204 -YSNGDCYVWDTLLAKVVL-----NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       204 -~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                       +..+.|+.|+........     .+.. ...-.+....+++.++|++.++.-..+.|..|+..|
T Consensus       166 dt~~~~I~~~~~d~~~~~~~~~~~~~~~-~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G  229 (295)
T d2ghsa1         166 DTKVNRLMRVPLDARTGLPTGKAEVFID-STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG  229 (295)
T ss_dssp             ETTTCEEEEEEBCTTTCCBSSCCEEEEE-CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred             ecccceeeEeeecccccccccceEEEec-cCcccccccceEEcCCCCEEeeeeCCCceEEecCCC
Confidence             457889888764321110     0000 112334567889999999888766778888888654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.80  E-value=0.011  Score=43.46  Aligned_cols=99  Identities=14%  Similarity=0.173  Sum_probs=60.7

Q ss_pred             EEecC--CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-CC-----eEEEEeCCc
Q 024451          145 KFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NG-----DCYVWDTLL  216 (267)
Q Consensus       145 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg-----~i~i~d~~~  216 (267)
                      ..+|+  |+.++-.+ ++.|.+.|+.+++..+. ..     ........+|||||+.|+-... ++     .|++++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~L-t~-----~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~   77 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKI-VS-----NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN   77 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEE-EC-----SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEE-ec-----CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence            35688  88877554 45688889987765432 21     1234678899999998876532 22     477777766


Q ss_pred             cceeeeccc--ccCCccceEEEEEECCCCCeEEEeE
Q 024451          217 AKVVLNLGS--LQNSHEGRITCLGLSADGSALCTGS  250 (267)
Q Consensus       217 ~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~sgs  250 (267)
                      ++...-...  ............+|+|+|+.|+...
T Consensus        78 g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          78 GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             CceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            544321100  0011122356788999999988643

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.64  E-value=0.035  Score=42.71  Aligned_cols=140  Identities=11%  Similarity=0.063  Sum_probs=76.1

Q ss_pred             CCeEEEEeCCCcccceEEeecccc-------ceeEEEE--ecCCC-EEEEe---eCCCcEEEEeCCCCeeeEEEEeecCC
Q 024451          116 DSTARLWDTRVASRAVRTFHGHEG-------DVNTVKF--FPDGN-RFGTG---SDDGTCRLFDIRTGHQLQVYYQQHGE  182 (267)
Q Consensus       116 d~~i~iwd~~~~~~~~~~~~~~~~-------~i~~~~~--~~~~~-~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~  182 (267)
                      .|.|.++|++........+.-...       .-+.+.+  .+++. +|++.   ....+|.+|++........+......
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            478888887644332222221111       1234443  34554 23333   34568888888644322223332222


Q ss_pred             CCCCcEEEEEEccCCCEEEEEE-----------------eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCe
Q 024451          183 NEIPHVTSIAFSISGRLLFAGY-----------------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA  245 (267)
Q Consensus       183 ~~~~~v~~~~~s~~~~~l~~g~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  245 (267)
                      ........+++..++.++++-.                 ..|.+.-||....+.+..       .-..-+.++++||+++
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-------~l~~pNGI~~s~d~~~  219 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-------GFDFANGINISPDGKY  219 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-------EESSEEEEEECTTSSE
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-------CCCccceeEECCCCCE
Confidence            3334578888888888888731                 123455555443322211       1224588999999987


Q ss_pred             EEEe-ECCCcEEEEecCc
Q 024451          246 LCTG-SWDTNLKIWAFGG  262 (267)
Q Consensus       246 l~sg-s~dg~i~~w~~~~  262 (267)
                      |..+ +..+.|+.|++.+
T Consensus       220 lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         220 VYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             EEEEEGGGTEEEEEEECT
T ss_pred             EEEEeCCCCeEEEEEeCC
Confidence            7654 4577888887653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.33  E-value=0.21  Score=41.01  Aligned_cols=81  Identities=11%  Similarity=0.105  Sum_probs=49.9

Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      |.+.-||+.+++..-.......      ...-.++..+.++++|+.||.++-||..+++.+.+...-...+..++   .+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~------~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~---ty  508 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH------WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPM---TF  508 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE---EE
T ss_pred             cceEEEeCCCCeEeeeccCCCC------CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCE---EE
Confidence            4577888888876654432211      11112344677888999999999999999999876543222233333   33


Q ss_pred             CCCCC-eEEEe
Q 024451          240 SADGS-ALCTG  249 (267)
Q Consensus       240 ~p~~~-~l~sg  249 (267)
                      ..+|+ |++..
T Consensus       509 ~~dGkqyv~v~  519 (560)
T d1kv9a2         509 ELAGRQYVAIM  519 (560)
T ss_dssp             EETTEEEEEEE
T ss_pred             EECCEEEEEEE
Confidence            44665 55543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.10  E-value=0.22  Score=39.11  Aligned_cols=146  Identities=9%  Similarity=0.103  Sum_probs=82.5

Q ss_pred             EEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEEec--CCCEEEEeeCCC------------------cEEEEeC
Q 024451          109 MFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFP--DGNRFGTGSDDG------------------TCRLFDI  167 (267)
Q Consensus       109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~d~------------------~i~iwd~  167 (267)
                      +|+....+..|-+-|++..+ ..+... .....++.+...+  ...|++..+++.                  .+.++|.
T Consensus       102 lFVNDkan~RVAvIdl~~fk-t~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~  180 (459)
T d1fwxa2         102 LFMNDKANTRVARVRCDVMK-CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA  180 (459)
T ss_dssp             EEEEETTTTEEEEEETTTTE-EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEET
T ss_pred             EEEEcCCCceEEEEECccee-eeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEec
Confidence            45556677888888886533 222222 2344567776654  556787776633                  2567888


Q ss_pred             CCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC---------------eEEEEeCCccc--------------
Q 024451          168 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---------------DCYVWDTLLAK--------------  218 (267)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg---------------~i~i~d~~~~~--------------  218 (267)
                      .+.+......-   .   .....+.++++|+++++.+.+.               .+.+++....+              
T Consensus       181 ~tm~V~~QV~V---~---g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         181 DKWEVAWQVLV---S---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             TTTEEEEEEEE---S---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             CCceEEEEeee---C---CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            77654433221   1   1345778999999998876431               23334421100              


Q ss_pred             eeeecc---------cccCCccceEEEEEECCCCCeEEEeE-CCCcEEEEecCce
Q 024451          219 VVLNLG---------SLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAFGGY  263 (267)
Q Consensus       219 ~~~~~~---------~~~~~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~~~  263 (267)
                      .+....         .++.  ...-..+.++|||+|+++++ .+.++.++++..+
T Consensus       255 ~VVD~~~~~~~~v~~yIPV--pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki  307 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  307 (459)
T ss_dssp             EEEECSGG--CSSEEEEEE--ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             eeecccccCCcceeEEEec--CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhh
Confidence            000000         0000  01124578999999987654 4899999998543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.78  E-value=0.24  Score=36.90  Aligned_cols=232  Identities=10%  Similarity=0.184  Sum_probs=126.7

Q ss_pred             eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC-eeE
Q 024451            4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRT   82 (267)
Q Consensus         4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~   82 (267)
                      -.+|..+.|+.-+ ..++.++|++...       ......-. ..|.-=.|..+.  .|+-.+ +..|.=|+++.. .+.
T Consensus        69 IMhP~~~IiALra-g~~LQiFnletK~-------klks~~~~-e~VvfWkWis~~--~L~lVT-~taVYHW~~~g~s~P~  136 (327)
T d1utca2          69 IMNPASKVIALKA-GKTLQIFNIEMKS-------KMKAHTMT-DDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPV  136 (327)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEETTTTE-------EEEEEECS-SCCCEEEESSSS--EEEEEC-SSEEEEEESSSSCCCE
T ss_pred             hcCCCCcEEEEec-CCeEEEEehhHhh-------hhceEEcC-CCcEEEEecCCC--EEEEEc-CCceEEEcccCCCCch
Confidence            3578888887766 5589999987522       11111111 234445666543  343332 347899998532 344


Q ss_pred             EEeCCccccCCccceEEEEEeCCCCeEEE-Ee------cCCCeEEEEeCCCcccceEEeeccccceeEEEEecCC---CE
Q 024451           83 SVFGGEFQSGHTADVLSVSISGSNSRMFV-SG------SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG---NR  152 (267)
Q Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-s~------~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~  152 (267)
                      .++...... ....|.....++. .+.++ +|      +-.|.+.+|..+  ++....+.||.+....+.+.-+.   +.
T Consensus       137 k~fdR~~~L-~~~QIInY~~d~~-~kW~~l~GI~~~~~~i~G~mQLYS~e--r~~sQ~ieGhaa~F~~~~~~g~~~~~~l  212 (327)
T d1utca2         137 KMFDRHSSL-AGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEESTL  212 (327)
T ss_dssp             EEEECCGGG-TTCEEEEEEECTT-SCEEEEEEEEEETTEEEEEEEEEETT--TTEEEEECCSEEEEEEECCTTCSSCEEE
T ss_pred             hhhhhcccc-cCceEEEEEECCC-CCEEEEEeEecCCCceeEEEEEEEec--cCcCccccceeeeeEEEEcCCCCCCceE
Confidence            444322111 1334555555543 33322 22      224678899875  34556677887655554442211   23


Q ss_pred             EEEe---eCCCcEEEEeCCCCe---e------eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee
Q 024451          153 FGTG---SDDGTCRLFDIRTGH---Q------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       153 l~~~---~~d~~i~iwd~~~~~---~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  220 (267)
                      |+-+   ...++++|.++....   .      ...++...  .......++..|+....+..-+.-|.+++||++++..+
T Consensus       213 f~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppe--a~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i  290 (327)
T d1utca2         213 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE--AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  290 (327)
T ss_dssp             EEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTT--CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcc--ccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence            3222   233688888875521   1      11111111  11234567788888889999999999999999998876


Q ss_pred             eecccccCCccceEEEEEECCCCCeEEEeECCCcEEE
Q 024451          221 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI  257 (267)
Q Consensus       221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~  257 (267)
                      ..-    +-..+.|...+-..+..-++.-.++|.|..
T Consensus       291 ~~n----RIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         291 YMN----RISGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEE----ECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             EEe----ecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence            532    223455665444444444454557776543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.70  E-value=0.29  Score=37.31  Aligned_cols=190  Identities=13%  Similarity=0.112  Sum_probs=96.6

Q ss_pred             eeeCCCCCeEEEccC------------CCeEEEeecCCCCCCCCCC------cccccccCCeeeEEEEEEecCCCeeEEE
Q 024451            3 CAFSPTGQSVACGGL------------DSVCSIFNLNSPTDKDGNL------PVSRMLSGHKGYVSCCQYVPDEDTHLIT   64 (267)
Q Consensus         3 ~~~~~~g~~l~~~~~------------d~~v~~w~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~l~s   64 (267)
                      +...|+|..+++++.            .|.+.++|+..+.......      +....+..|.-.+   .-.+++..+|+.
T Consensus        40 i~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l---~~~~dg~~~L~v  116 (340)
T d1v04a_          40 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGIST---FIDDDNTVYLLV  116 (340)
T ss_dssp             EEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEE---EECTTCCEEEEE
T ss_pred             EEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeE---EEcCCCcEEEEE
Confidence            456789988877653            3888888886543211111      1111122332111   112334334554


Q ss_pred             e---eCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEec-----------------CCCeEEEEeC
Q 024451           65 S---SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-----------------CDSTARLWDT  124 (267)
Q Consensus        65 ~---~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~-----------------~d~~i~iwd~  124 (267)
                      .   ....+|-++++.....................+.+.+.. ++.+++|-.                 .-+.+..||.
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            4   245678888775433222221111122334467777775 456666621                 1233444443


Q ss_pred             CCcccceEEeeccccceeEEEEecCCCEEEEe-eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEE
Q 024451          125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFA  202 (267)
Q Consensus       125 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~  202 (267)
                      ..    .......-...+.++++|++++++.+ +..+.|+.|++...+..........   ....-.+.+++ ++.+.++
T Consensus       196 ~~----~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l---~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         196 ND----VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             SC----EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCCEEEE
T ss_pred             Cc----eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecC---CCCCCccEEecCCCEEEEE
Confidence            21    22222223457889999999876554 5678899999875543332221111   12345667765 4455544


Q ss_pred             E
Q 024451          203 G  203 (267)
Q Consensus       203 g  203 (267)
                      +
T Consensus       269 ~  269 (340)
T d1v04a_         269 C  269 (340)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.55  E-value=0.27  Score=35.92  Aligned_cols=198  Identities=10%  Similarity=0.062  Sum_probs=109.6

Q ss_pred             eeeCCCCCeEE-EccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451            3 CAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR   81 (267)
Q Consensus         3 ~~~~~~g~~l~-~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   81 (267)
                      ++|.+..+.|. +-..++.|...++....       ....+......+..+++...++.+..+-...+.|.+.++.....
T Consensus        41 ld~D~~~~~iywsd~~~~~I~~~~l~g~~-------~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          41 LAFDCVDKVVYWTDISEPSIGRASLHGGE-------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEESSSCC-------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             EEEEeCCCEEEEEECCCCeEEEEEcccCC-------cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            45665554444 43456677776664321       11112222345677787765555555666678999999876544


Q ss_pred             EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe-eccccceeEEEEecCCCEE-EEeeCC
Q 024451           82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRF-GTGSDD  159 (267)
Q Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l-~~~~~d  159 (267)
                      ...+.     ..-.....++++|..+.++.+....+..+|+-..........+ .........+++.+.++.| .+-...
T Consensus       114 ~~l~~-----~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~  188 (263)
T d1npea_         114 RVLFD-----TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (263)
T ss_dssp             EEEEC-----SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEEec-----ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCC
Confidence            33332     1224567888998887777665443344455332222222222 2223455789998877666 444567


Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE-EEEeCCeEEEEeCCcccee
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF-AGYSNGDCYVWDTLLAKVV  220 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~g~~dg~i~i~d~~~~~~~  220 (267)
                      +.|...|++....... ...  .   .....+++.  +..|. +-...+.|...|...++..
T Consensus       189 ~~I~~~~~~g~~~~~v-~~~--~---~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         189 HRAECLNPAQPGRRKV-LEG--L---QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM  242 (263)
T ss_dssp             TEEEEEETTEEEEEEE-EEC--C---CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCCeEEE-ECC--C---CCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccc
Confidence            8899999875443322 221  1   123566654  34444 4345677888887666544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.18  E-value=0.65  Score=38.05  Aligned_cols=96  Identities=10%  Similarity=0.107  Sum_probs=57.3

Q ss_pred             cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451          161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS  240 (267)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (267)
                      .+.-||+.+++.+-.......      ...-..+..+.++++|+.||.++.||..+++.+.++..-...+..++   .+.
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p------~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~---ty~  528 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSP------WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPS---TYM  528 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE---EEE
T ss_pred             cEEEeCCCCCceEeeecCCCC------CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCE---EEE
Confidence            466677777766544322111      11112344678899999999999999999999876533222333443   333


Q ss_pred             CCCC-eEEEeEC----------------CCcEEEEecCceEe
Q 024451          241 ADGS-ALCTGSW----------------DTNLKIWAFGGYRR  265 (267)
Q Consensus       241 p~~~-~l~sgs~----------------dg~i~~w~~~~~~~  265 (267)
                      .+|+ |++..+-                .+.|.+|+++|-.+
T Consensus       529 ~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~~  570 (573)
T d1kb0a2         529 VDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKAR  570 (573)
T ss_dssp             ETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCC
T ss_pred             ECCEEEEEEEeCCCcccccccccccCCCCCEEEEEEeCCcCC
Confidence            4666 4443221                23578888877654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.07  E-value=0.71  Score=33.55  Aligned_cols=186  Identities=8%  Similarity=-0.019  Sum_probs=108.8

Q ss_pred             CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceE
Q 024451           19 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL   98 (267)
Q Consensus        19 ~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~   98 (267)
                      +.|+-.+++...  ....+....+..+...+..++|.+.++....+-..++.|+..+++..........     ....+.
T Consensus        10 ~~I~~~~ld~~~--~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~-----~~~~p~   82 (263)
T d1npea_          10 GKIERLPLERNT--MKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-----DLGSPE   82 (263)
T ss_dssp             EEEEEEEESSSC--BCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-----TCCCEE
T ss_pred             CeEEEEECCCcc--ccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe-----cccccc
Confidence            356666664321  1111222233445556778999887665555556678898888876544443321     123467


Q ss_pred             EEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE-EeeCCCcEEEE--eCCCCeeeEE
Q 024451           99 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDDGTCRLF--DIRTGHQLQV  175 (267)
Q Consensus        99 ~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iw--d~~~~~~~~~  175 (267)
                      .++++..+++++.+-...+.|.+.++.... ....+.........++++|...++. +-...+..+|+  ++..... ..
T Consensus        83 ~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~  160 (263)
T d1npea_          83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RI  160 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EE
T ss_pred             EEEEeccCCeEEEeccCCCEEEEEecCCce-EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-ee
Confidence            788887677787787888899999876322 2222222235678999999766554 32222333444  4543322 22


Q ss_pred             EEeecCCCCCCcEEEEEEccCCCEEEEE-EeCCeEEEEeCCcc
Q 024451          176 YYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLLA  217 (267)
Q Consensus       176 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i~d~~~~  217 (267)
                      +...    .......+++++.++.|.-. ...+.|...|....
T Consensus       161 i~~~----~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~  199 (263)
T d1npea_         161 LAQD----NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP  199 (263)
T ss_dssp             EECT----TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred             eeee----cccccceEEEeecCcEEEEEeCCCCEEEEEECCCC
Confidence            2211    22356889999887777555 35678888887543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.92  E-value=0.88  Score=35.60  Aligned_cols=113  Identities=17%  Similarity=0.186  Sum_probs=62.9

Q ss_pred             eeEEEEecCCCEEEEe-eCC----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC---------
Q 024451          141 VNTVKFFPDGNRFGTG-SDD----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---------  206 (267)
Q Consensus       141 i~~~~~~~~~~~l~~~-~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---------  206 (267)
                      +..+.++|++++++-+ +.+    -.++++|+.+++.+.......      ....++|++++..|+-...+         
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~------~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV------KFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE------CSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccc------cccceEEcCCCCEEEEEEeccccCccccc
Confidence            3456778999988743 222    369999999988654322211      11467899999877643322         


Q ss_pred             -------CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC---CCcEEEEe
Q 024451          207 -------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW---DTNLKIWA  259 (267)
Q Consensus       207 -------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~---dg~i~~w~  259 (267)
                             ..++.+.+.+.........-.......+..+..++++++++....   +....+|.
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~  263 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY  263 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEE
Confidence                   246666554332110000000112234667888999999864332   33455553

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.74  E-value=1.4  Score=35.96  Aligned_cols=81  Identities=17%  Similarity=0.203  Sum_probs=52.1

Q ss_pred             CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451          159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG  238 (267)
Q Consensus       159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  238 (267)
                      .|.+.-+|+.+++..-.......      +..-..+..+..+++|+.||.++-+|.++++.+.+...-...+..+   +.
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p------~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~t  535 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLP------LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---IT  535 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSC------CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCC------CccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC---EE
Confidence            36788889998877654433221      1111234577788899999999999999999987664322233334   34


Q ss_pred             ECCCCC-eEEE
Q 024451          239 LSADGS-ALCT  248 (267)
Q Consensus       239 ~~p~~~-~l~s  248 (267)
                      +..+|+ |++.
T Consensus       536 y~~~G~qYv~i  546 (582)
T d1flga_         536 WEQDGEQYLGV  546 (582)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEECCEEEEEE
Confidence            556775 5554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.06  E-value=1.3  Score=33.51  Aligned_cols=156  Identities=12%  Similarity=0.177  Sum_probs=81.2

Q ss_pred             eCCCCCeEEEccCCC-----------eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC-CeEE
Q 024451            5 FSPTGQSVACGGLDS-----------VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-QTCV   72 (267)
Q Consensus         5 ~~~~g~~l~~~~~d~-----------~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-~~v~   72 (267)
                      ...+|++++.||.+.           .+.+||.....-.  ..+.  ...+|........+.+++ .+++.|+.+ ..+.
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~--~~~~--~~~~~~~~~~~~~~~~~g-~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS--DRTV--TVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTS  101 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC--CCEE--EECSCCCSSCEEEECTTS-CEEEECSSSTTCEE
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEe--ecCC--CCCCcccceeEEEEecCC-cEEEeecCCCccee
Confidence            446788888888531           3668887653211  1111  112232223345566765 466666655 6899


Q ss_pred             EEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC------CeEEEEeCCCcccceEEee----------c
Q 024451           73 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFH----------G  136 (267)
Q Consensus        73 iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d------~~i~iwd~~~~~~~~~~~~----------~  136 (267)
                      +||..+..-...-  ....  ...-.+.+.. .++++++.++.+      ..+.+||.....  ...+.          .
T Consensus       102 ~yd~~~~~w~~~~--~~~~--~r~~~~~~~~-~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~  174 (387)
T d1k3ia3         102 LYDSSSDSWIPGP--DMQV--ARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKT--WTSLPNAKVNPMLTAD  174 (387)
T ss_dssp             EEEGGGTEEEECC--CCSS--CCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTE--EEEETTSCSGGGCCCC
T ss_pred             EecCccCcccccc--cccc--cccccceeee-cCCceeeeccccccccccceeeeecCCCCc--eeecCCCccccccccc
Confidence            9999876543321  1111  1111233333 356777777643      357888876421  11111          0


Q ss_pred             cccc-----eeEEEEecCCCEEEEeeCCCcEEEEeCCCCee
Q 024451          137 HEGD-----VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ  172 (267)
Q Consensus       137 ~~~~-----i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  172 (267)
                      +...     -..+...++++.++.++.+..+.++|..+...
T Consensus       175 ~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         175 KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             ccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            0000     01122345677777777777788888766543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=1.2  Score=32.30  Aligned_cols=180  Identities=9%  Similarity=-0.045  Sum_probs=102.7

Q ss_pred             eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc---cceEEeeccccceeEEEE
Q 024451           70 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKF  146 (267)
Q Consensus        70 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~  146 (267)
                      .|+..++++......+.      ....+..++++...++++.+-..++.|.--++....   .....+......+..+++
T Consensus        11 ~I~~~~l~~~~~~~~~~------~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAv   84 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIP------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV   84 (266)
T ss_dssp             SEEEEETTSCCCEEEEC------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             eEEEEECCCCcceeeeC------CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEE
Confidence            47778887655433332      233567888988777777776677777766553211   111222222345678888


Q ss_pred             ecCCCEE-EEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE--eCCeEEEEeCCccceeeec
Q 024451          147 FPDGNRF-GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY--SNGDCYVWDTLLAKVVLNL  223 (267)
Q Consensus       147 ~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~--~dg~i~i~d~~~~~~~~~~  223 (267)
                      .+.++.+ .+-...++|.+.++.......... ..    ......++++|...+|.-..  ..+.|.-.++...... .+
T Consensus        85 D~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~-~~----~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~-~l  158 (266)
T d1ijqa1          85 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-EN----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL  158 (266)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CT----TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EE
T ss_pred             eeccceEEEEecCCCEEEeEecCCceEEEEEc-CC----CCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee-cc
Confidence            8755544 455567889999987655433222 11    23468889998776665543  2345665655332211 11


Q ss_pred             ccccCCccceEEEEEECCCCCeEEEe-ECCCcEEEEecCceE
Q 024451          224 GSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKIWAFGGYR  264 (267)
Q Consensus       224 ~~~~~~~~~~v~~~~~~p~~~~l~sg-s~dg~i~~w~~~~~~  264 (267)
                      .   ...-.....+++.+.++.|.-+ +..+.|...+++|..
T Consensus       159 ~---~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         159 V---TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             E---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             c---ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            0   1122345788888877655544 446677777776643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.30  E-value=2.8  Score=31.73  Aligned_cols=190  Identities=13%  Similarity=0.148  Sum_probs=100.6

Q ss_pred             eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeC-----CCCeEEEEec--CC--CeEEEEeCCCcccc
Q 024451           60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG-----SNSRMFVSGS--CD--STARLWDTRVASRA  130 (267)
Q Consensus        60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~s~~--~d--~~i~iwd~~~~~~~  130 (267)
                      .+++....++=|.+||++ ++.+..+.       .+.++.|.+-.     .....++.++  .+  ..|.+|.+......
T Consensus        41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~-------~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~  112 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE-GKMLHSYH-------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (353)
T ss_dssp             CEEEEEETTSCCEEEETT-CCEEEECC-------SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE
T ss_pred             cEEEEEcCcCCEEEEcCC-CcEEEecc-------cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc
Confidence            355555555559999996 55554432       23455555431     1111233333  22  35777866432222


Q ss_pred             eEEeecc-------ccceeEEEE--ecC-CC-EEEEeeCCCcEEEEeCCC---CeeeEEEEeecCCCCCCcEEEEEEccC
Q 024451          131 VRTFHGH-------EGDVNTVKF--FPD-GN-RFGTGSDDGTCRLFDIRT---GHQLQVYYQQHGENEIPHVTSIAFSIS  196 (267)
Q Consensus       131 ~~~~~~~-------~~~i~~~~~--~~~-~~-~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~  196 (267)
                      +..+...       ...+..+++  +|. +. +++....+|.+..|.+..   +..........  .....+..+.++..
T Consensus       113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f--~~~~q~EGCVvDde  190 (353)
T d1h6la_         113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF--KMNSQTEGMAADDE  190 (353)
T ss_dssp             EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE--ECSSCEEEEEEETT
T ss_pred             cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc--CCCCccceEEEeCC
Confidence            2222211       123666666  554 44 456667789988887632   22111111111  11235788889999


Q ss_pred             CCEEEEEEeCCeEEEEeCCccc-----eeeecccccCCccceEEEEEEC--CCCC-eEEEeE-CCCcEEEEecC
Q 024451          197 GRLLFAGYSNGDCYVWDTLLAK-----VVLNLGSLQNSHEGRITCLGLS--ADGS-ALCTGS-WDTNLKIWAFG  261 (267)
Q Consensus       197 ~~~l~~g~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~v~~~~~~--p~~~-~l~sgs-~dg~i~~w~~~  261 (267)
                      ...|+.+-++..++.++.....     .+.....  ....+.+..|++=  ++++ ||+..| .|.+..+|+..
T Consensus       191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g--~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~  262 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG--RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQ  262 (353)
T ss_dssp             TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSS--SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCcEEEecCccceEEEEeccCCCccceeeecccC--ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecC
Confidence            9999999888878777764321     1111110  1234566777653  3333 555444 47789999753

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.79  E-value=4.2  Score=32.97  Aligned_cols=80  Identities=19%  Similarity=0.197  Sum_probs=47.1

Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      |.+.-+|+.+++..-....... ....     ..+..+..+++|+.||.++-+|.++++.+.+...-......+++   +
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~-~~~g-----~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~t---y  514 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFA-AWGG-----TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMT---Y  514 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC-CCSB-----CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE---E
T ss_pred             ccEEEeccCCCceeeEcCCCCC-CCcc-----eeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceE---E
Confidence            3566777777776544322111 1111     12335678888999999999999999988765322223333443   3


Q ss_pred             CCCCC-eEEE
Q 024451          240 SADGS-ALCT  248 (267)
Q Consensus       240 ~p~~~-~l~s  248 (267)
                      ..||+ |++.
T Consensus       515 ~~dGkqYi~v  524 (571)
T d2ad6a1         515 SFKGKQYIGS  524 (571)
T ss_dssp             EETTEEEEEE
T ss_pred             EECCEEEEEE
Confidence            44665 5544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.47  E-value=6.1  Score=30.89  Aligned_cols=64  Identities=13%  Similarity=0.181  Sum_probs=41.3

Q ss_pred             cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeec---CCCCCCcEEEEEEccC---CCEEEE
Q 024451          139 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH---GENEIPHVTSIAFSIS---GRLLFA  202 (267)
Q Consensus       139 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~---~~~l~~  202 (267)
                      ..-.+++|.|+++++++--..|.|++++..+++.........   ..........++|+|+   ..++..
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv   96 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence            345799999999988876557999999887765433221110   1122345788999985   344444

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.44  E-value=4.3  Score=29.13  Aligned_cols=178  Identities=8%  Similarity=-0.001  Sum_probs=102.0

Q ss_pred             eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe----eEEEeCCccccCCcc
Q 024451           20 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL----RTSVFGGEFQSGHTA   95 (267)
Q Consensus        20 ~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~~~~~   95 (267)
                      .|+..++..+..       .... .....+..+.|.+.++....+=..++.|+.-++....    ......     ....
T Consensus        11 ~I~~~~l~~~~~-------~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~-----~~~~   77 (266)
T d1ijqa1          11 EVRKMTLDRSEY-------TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-----RDIQ   77 (266)
T ss_dssp             SEEEEETTSCCC-------EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-----SSCS
T ss_pred             eEEEEECCCCcc-------eeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe-----CCCC
Confidence            488888765321       1112 2334566889988766554454556777766654211    111111     1123


Q ss_pred             ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE-EEe-eCCCcEEEEeCCCCeee
Q 024451           96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTG-SDDGTCRLFDIRTGHQL  173 (267)
Q Consensus        96 ~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~-~~d~~i~iwd~~~~~~~  173 (267)
                      .+..+++...++.++.+-...+.|.+.++.. ................++++|...++ .+. +..+.|.-.++..... 
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g-~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-  155 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-  155 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCC-ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-
Confidence            3456777766778888888888999999863 33333343344567889999865544 343 3345566666654332 


Q ss_pred             EEEEeecCCCCCCcEEEEEEccCCCEEEEE-EeCCeEEEEeCCc
Q 024451          174 QVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLL  216 (267)
Q Consensus       174 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i~d~~~  216 (267)
                      ..+...    .......+++++.++.|.-. ...+.|...|+..
T Consensus       156 ~~l~~~----~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         156 YSLVTE----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             EEEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             eccccc----ccceeeEEEeeccccEEEEecCCcCEEEEEECCC
Confidence            222221    12346889999877766655 4457888888643

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.43  E-value=5.6  Score=30.40  Aligned_cols=143  Identities=16%  Similarity=0.050  Sum_probs=74.8

Q ss_pred             ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEE
Q 024451           96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV  175 (267)
Q Consensus        96 ~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  175 (267)
                      .+..++++..  . ++. ..++.+..++..... .......-..++..+.+.|  ..++..-.++.+-++++..++....
T Consensus        88 ~v~~vafs~d--~-l~v-~~~~~l~~~~~~~l~-~~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~  160 (381)
T d1xipa_          88 DVIFVCFHGD--Q-VLV-STRNALYSLDLEELS-EFRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQL  160 (381)
T ss_dssp             TEEEEEEETT--E-EEE-EESSEEEEEESSSTT-CEEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CeEEEEeeCC--E-EEE-EeCCCEEEEEeeccc-cccccccccccccceecCC--ceeEEEecCCCEEEEEeccCccccc
Confidence            4777888632  2 332 344567777765322 1222222234566677665  4566677789999999988754332


Q ss_pred             EEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEE-eCCccceeeecccccCCccceEEEEEECCCCCeEEEeE
Q 024451          176 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW-DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS  250 (267)
Q Consensus       176 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs  250 (267)
                      ............+.+++|++.+..++++..+ ...+- +......   ... +......+.++.|-.+..+++.-+
T Consensus       161 ~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~-~~q~k~~i~~~~~---~~~-p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         161 AQNVTSFDVTNSQLAVLLKDRSFQSFAWRNG-EMEKQFEFSLPSE---LEE-LPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             EESEEEEEECSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCHH---HHT-SCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cCCcceEEecCCceEEEEeCCcEEEEEeCCC-ceeeccCCCCccc---cCC-CcCCCcceeEEEEecCceEEEEEC
Confidence            2111001112346777777777777776322 22211 1111110   000 012344678899887777776553

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.22  E-value=2  Score=35.19  Aligned_cols=80  Identities=15%  Similarity=0.183  Sum_probs=48.9

Q ss_pred             CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451          160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL  239 (267)
Q Consensus       160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (267)
                      |.+.-||+.+++..-.......      ...-.++..+..++.|+.||.++-+|..+++.+.++..-...+..+++   +
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~------~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~t---Y  523 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFA------VWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT---Y  523 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE---E
T ss_pred             ceEEEEeCCCCceecccCCCCC------CccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeE---E
Confidence            4677888888876543322111      111123446778888999999999999999998766432223344443   3


Q ss_pred             CCCCC-eEEE
Q 024451          240 SADGS-ALCT  248 (267)
Q Consensus       240 ~p~~~-~l~s  248 (267)
                      ..+|+ |++.
T Consensus       524 ~~dGkQYvav  533 (596)
T d1w6sa_         524 THKGTQYVAI  533 (596)
T ss_dssp             EETTEEEEEE
T ss_pred             EECCEEEEEE
Confidence            34665 4543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=83.00  E-value=8.8  Score=29.86  Aligned_cols=191  Identities=10%  Similarity=0.047  Sum_probs=101.2

Q ss_pred             CeeEEEe-eCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeC-CCCeEEEEecCC------------------Ce
Q 024451           59 DTHLITS-SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG-SNSRMFVSGSCD------------------ST  118 (267)
Q Consensus        59 ~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~s~~~d------------------~~  118 (267)
                      +++++.. ..+..|-+-|+.+-+...+....    -...+..+.... ++..+++.++.+                  +.
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iP----n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEIP----NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECS----SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEecC----CCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence            3566654 46788999999887655543211    112233333321 223344443332                  23


Q ss_pred             EEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC--------------------------------------
Q 024451          119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG--------------------------------------  160 (267)
Q Consensus       119 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--------------------------------------  160 (267)
                      +.+.|..... ...+..- .+....++++++|+++++.+.+.                                      
T Consensus       175 ~t~ID~~tm~-V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         175 FTAVDADKWE-VAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEETTTTE-EEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEecCCce-EEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            5566765332 2222221 23467889999999988766331                                      


Q ss_pred             cEEEEeCCCCe--eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeee-------c-ccccCC
Q 024451          161 TCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLN-------L-GSLQNS  229 (267)
Q Consensus       161 ~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~-------~-~~~~~~  229 (267)
                      .+.+-|.+...  ....+....     .....+..+|||+++++++ -+..+.++|.+.......       . ..-...
T Consensus       253 gV~VVD~~~~~~~~v~~yIPVp-----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el  327 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  327 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred             CceeecccccCCcceeEEEecC-----CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence            12333332210  010000000     1134678899999987765 578999999764321110       0 000112


Q ss_pred             ccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451          230 HEGRITCLGLSADGSALCTGSWDTNLKIWAFG  261 (267)
Q Consensus       230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~  261 (267)
                      .-+++. -+|...|+...|---|..|.-|++.
T Consensus       328 glgPLh-t~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         328 GLGPLH-TAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CSCEEE-EEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             CcCccc-cccCCCceEEEEeeccceEEEEecc
Confidence            334444 5688888666666679999999873

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.82  E-value=8  Score=28.53  Aligned_cols=220  Identities=13%  Similarity=0.163  Sum_probs=118.8

Q ss_pred             ccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCc
Q 024451           15 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT   94 (267)
Q Consensus        15 ~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~   94 (267)
                      .+...++.+-|+..+.+.     ..+.+.+ .+.|    -+|.. ..|+--+ ..+++++|+++..+...+.      ..
T Consensus        41 ~~~~~~VvIidl~n~~~~-----~Rrpi~A-dsAI----MhP~~-~IiALra-g~~LQiFnletK~klks~~------~~  102 (327)
T d1utca2          41 VGEQAQVVIIDMNDPSNP-----IRRPISA-DSAI----MNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHT------MT  102 (327)
T ss_dssp             ETTEEEEEEEETTSTTSC-----EEEECCC-SEEE----ECSSS-SEEEEEE-TTEEEEEETTTTEEEEEEE------CS
T ss_pred             cCCCceEEEEECCCCCcc-----eecccch-hhhh----cCCCC-cEEEEec-CCeEEEEehhHhhhhceEE------cC
Confidence            344568889998765421     2222222 2222    35754 3444333 5689999999988777653      23


Q ss_pred             cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc----cceeEEEEecCCCEEEEee---C----CCcEE
Q 024451           95 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE----GDVNTVKFFPDGNRFGTGS---D----DGTCR  163 (267)
Q Consensus        95 ~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~---~----d~~i~  163 (267)
                      ++|.--.|-.++  .++-.. +..|.=|++.....+.+.+.-|.    ..|-.-..+++.+.++..|   .    .|.+.
T Consensus       103 e~VvfWkWis~~--~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQ  179 (327)
T d1utca2         103 DDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ  179 (327)
T ss_dssp             SCCCEEEESSSS--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEE
T ss_pred             CCcEEEEecCCC--EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEE
Confidence            456666776433  333222 33799999865555666666553    3466667778888766432   2    36788


Q ss_pred             EEeCCCCeeeEEE-------EeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc--------eeeecccccC
Q 024451          164 LFDIRTGHQLQVY-------YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--------VVLNLGSLQN  228 (267)
Q Consensus       164 iwd~~~~~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--------~~~~~~~~~~  228 (267)
                      +|..+.... +.+       ......+...+..-++|...      +...+.+++-++....        ....+...+.
T Consensus       180 LYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r------~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppe  252 (327)
T d1utca2         180 LYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVR------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE  252 (327)
T ss_dssp             EEETTTTEE-EEECCSEEEEEEECCTTCSSCEEEEEEEEE------ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred             EEEeccCcC-ccccceeeeeEEEEcCCCCCCceEEEEEEC------CCCCcEEEEEEcCCCccCCCCCcceeEEEECCcc
Confidence            888765421 111       00000111111222222211      1233688888864421        1111111111


Q ss_pred             CccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451          229 SHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG  262 (267)
Q Consensus       229 ~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~  262 (267)
                      .-.+-=.++-+++....+..-+.-|.+.+||+..
T Consensus       253 a~~DFPvamqvs~kygiiyviTK~G~i~lyDleT  286 (327)
T d1utca2         253 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET  286 (327)
T ss_dssp             CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred             ccCCcEEEEEeeccCCEEEEEecCcEEEEEEccc
Confidence            1122233577777777777788999999999754