Citrus Sinensis ID: 024514

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSCL
ccccccccccccccEEcccccEEEEccHHHHHHHHHHHHccccccccccccEEcccccEEEEEcccccccEEEEcccccHHHHHHcccccccccHHHHHHHcccccccEEEEEEcccccccccccccccccccccEEEEEcccccccccccccEEEEEEcHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccccccccEEEcccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHccc
ccccEHccccccccEEcccccEEEcccHHHHHHHHHHHHcccccccccHHcccccccccccccccccccccEEcccccHHHHHHHHccccccccHHHHHHHcccccccHHHHEEccccccccccccccEEcccccHHEEEEccccccccccccEEEEEccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccEEcccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHcc
msqrretsedgnemlfdhgapfftvtnNDVLALVREWESGGLVAEWKVnlgsfdrvSKKFVNIQQdgmnkkyvgvpgmnsickalchqpdltfapdlavkleeipvnpcFALMLAfseplssipvkgfsfqdsevlswahcdsskpgrsanserWVLHSTADYARTVIaqtglqkpseATLKKVAEEMFQEFqgtglsiplpifrkahrwgsafpaasiaKEERCLWDVKRRLAICgdfcvspnvegAILSGLDAASKLTEILSCL
msqrretsedgnemlfdhgapfFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCdsskpgrsanseRWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSCL
MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSCL
**************LFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHC************RWVLHSTADYARTVIAQTGL*******LKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLT******
*SQRR**SEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSS*****ANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSC*
***********NEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWA************SERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSCL
***********NEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDR**KKFV*****GMNKKYVGVPGMNSICKALCHQPDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSCL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query266
224115286 372 predicted protein [Populus trichocarpa] 1.0 0.715 0.589 8e-98
22330276 384 FAD/NAD(P)-binding oxidoreductase domain 0.996 0.690 0.571 2e-93
6056384 396 Hypothetical protein [Arabidopsis thalia 0.996 0.669 0.571 2e-93
297847968 400 predicted protein [Arabidopsis lyrata su 0.996 0.662 0.568 4e-91
147778135 369 hypothetical protein VITISV_000801 [Viti 1.0 0.720 0.546 3e-90
225462207 369 PREDICTED: uncharacterized protein LOC10 1.0 0.720 0.542 1e-89
356525815 369 PREDICTED: uncharacterized protein LOC10 1.0 0.720 0.518 2e-86
297847978 384 hypothetical protein ARALYDRAFT_474667 [ 1.0 0.692 0.530 4e-86
449460040 369 PREDICTED: uncharacterized protein LOC10 1.0 0.720 0.524 3e-84
449502153 369 PREDICTED: uncharacterized protein LOC10 1.0 0.720 0.521 1e-83
>gi|224115286|ref|XP_002332207.1| predicted protein [Populus trichocarpa] gi|222875314|gb|EEF12445.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  362 bits (929), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 194/329 (58%), Positives = 224/329 (68%), Gaps = 63/329 (19%)

Query: 1   MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSK-- 58
           MSQRRE SEDG E+LFDHGAPFF+ +N+DVL LV EWES GLV EWK N GSFD +SK  
Sbjct: 44  MSQRREISEDGKELLFDHGAPFFSASNSDVLRLVHEWESKGLVEEWKENCGSFDCISKKF 103

Query: 59  ----------KFVNI-----------QQDGMNKKY-----------------VGVPGMN- 79
                     K+V I            + G+  K+                  G+ G N 
Sbjct: 104 LDIEQEAPNKKYVGIPGMNSICKALCNETGVESKFGVSIGRLECLDDEKWSLTGLDGQNL 163

Query: 80  ----------------SICKALCHQP--DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLS 121
                                    P  DL+  P+LA+KL++IPV+PCFALMLAFSEPLS
Sbjct: 164 GRFSGVVVSDKGIASPRFTDVTGRPPPLDLSLTPELALKLQDIPVSPCFALMLAFSEPLS 223

Query: 122 SIPVKGFSFQDSEVLSWAHCDSSKPGRS----ANSERWVLHSTADYARTVIAQTGLQKPS 177
           SI VKGFSF++SE+LSW+HCDSSKPGRS    A+ ERWVLHSTA+YAR +IAQTGLQKPS
Sbjct: 224 SISVKGFSFKNSEILSWSHCDSSKPGRSTARHASVERWVLHSTANYARGIIAQTGLQKPS 283

Query: 178 EATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICG 237
            ATL KVAEE+FQEFQ  GL+IP P F KAHRWGSAFP ASIA+E++CLWD K+RLAICG
Sbjct: 284 SATLTKVAEELFQEFQSIGLNIPRPFFMKAHRWGSAFPTASIAREQKCLWDRKKRLAICG 343

Query: 238 DFCVSPNVEGAILSGLDAASKLTEILSCL 266
           DFCVSPNVEGAILSGL AASKLTE+LSCL
Sbjct: 344 DFCVSPNVEGAILSGLAAASKLTEMLSCL 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|22330276|ref|NP_175996.2| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gi|17978976|gb|AAL47449.1| T6H22.19/T6H22.19 [Arabidopsis thaliana] gi|22655396|gb|AAM98290.1| At1g55980/T6H22.19 [Arabidopsis thaliana] gi|222423033|dbj|BAH19499.1| AT1G56000 [Arabidopsis thaliana] gi|332195208|gb|AEE33329.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|6056384|gb|AAF02848.1|AC009894_19 Hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297847968|ref|XP_002891865.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297337707|gb|EFH68124.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147778135|emb|CAN76485.1| hypothetical protein VITISV_000801 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462207|ref|XP_002270560.1| PREDICTED: uncharacterized protein LOC100264528 [Vitis vinifera] gi|296082792|emb|CBI21797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356525815|ref|XP_003531517.1| PREDICTED: uncharacterized protein LOC100816696 [Glycine max] Back     alignment and taxonomy information
>gi|297847978|ref|XP_002891870.1| hypothetical protein ARALYDRAFT_474667 [Arabidopsis lyrata subsp. lyrata] gi|297337712|gb|EFH68129.1| hypothetical protein ARALYDRAFT_474667 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449460040|ref|XP_004147754.1| PREDICTED: uncharacterized protein LOC101216187 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449502153|ref|XP_004161558.1| PREDICTED: uncharacterized protein LOC101224633 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query266
TAIR|locus:2012030384 AT1G56000 [Arabidopsis thalian 0.778 0.539 0.642 3.5e-68
TAIR|locus:2012005466 AT1G55980 [Arabidopsis thalian 0.567 0.324 0.580 1e-43
UNIPROTKB|Q48MT7328 PSPPH_1014 "Uncharacterized pr 0.601 0.487 0.373 1.6e-28
UNIPROTKB|Q4K6B1328 PFL_5143 "FAD dependent oxidor 0.601 0.487 0.408 5.2e-28
TAIR|locus:2084903486 AT3G04650 [Arabidopsis thalian 0.616 0.337 0.297 5.3e-24
TAIR|locus:2012030 AT1G56000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 140/218 (64%), Positives = 163/218 (74%)

Query:    49 NLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPDLTFAPDLAVKLEEIPVNP 108
             NLG FD V     NI    ++ ++  V G+           DL+  P+LA KL+ IPV P
Sbjct:   178 NLGRFDGVVASDKNI----VSPRFTQVTGLPPPL-------DLSLVPELATKLQNIPVLP 226

Query:   109 CFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVI 168
             CF+LMLAF EPLSSIPVKG SF++SE+LSWAHC+S+KPGRS +SERW+LHST DYA +VI
Sbjct:   227 CFSLMLAFKEPLSSIPVKGLSFKNSEILSWAHCESTKPGRSTDSERWILHSTPDYANSVI 286

Query:   169 AQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWD 228
             A+TGLQK S  TL K++EEMF+EFQ +GL   LP F KAHRWGSAFPA SIA EERCLWD
Sbjct:   287 AKTGLQKLSSETLNKISEEMFKEFQCSGLVSSLPFFMKAHRWGSAFPAKSIAVEERCLWD 346

Query:   229 VKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSCL 266
               R LAICGDFCVSPNVEGAILSGL AASKL +  SCL
Sbjct:   347 RNRNLAICGDFCVSPNVEGAILSGLAAASKLLQTSSCL 384
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2012005 AT1G55980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q48MT7 PSPPH_1014 "Uncharacterized protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K6B1 PFL_5143 "FAD dependent oxidoreductase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
TAIR|locus:2084903 AT3G04650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
COG3380331 COG3380, COG3380, Predicted NAD/FAD-dependent oxid 1e-33
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] Back     alignment and domain information 
 Score =  124 bits (312), Expect = 1e-33
 Identities = 78/302 (25%), Positives = 108/302 (35%), Gaps = 74/302 (24%)

Query: 16  FDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGV 75
           FDHGA +F   +   L  V      GLV  W   + +F             G    YVG 
Sbjct: 50  FDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTF-----TGDGSPPRGDEDPYVGE 104

Query: 76  PGMNSICKALCHQPDLTF-----------------------------------APDLAVK 100
           PGM+++ K L     +                                     AP  A  
Sbjct: 105 PGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATL 164

Query: 101 LEEIPVN---------------PCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSK 145
           L     +               PC++ +L + +PL   P  G +F D   L+W   D+SK
Sbjct: 165 LTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLD-RPWPG-NFVDGHPLAWLARDASK 222

Query: 146 PGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEM---FQEFQGTGLSIPLP 202
            G   + E WV+ ++ D++R  +     Q         V   +    QE  G  L  P  
Sbjct: 223 KGHVPDGEIWVVQASPDWSREHLDHPAEQ---------VIVALRAAAQELDGDRLPEPD- 272

Query: 203 IFRKAHRWGSAFPAASIAKEERCLW-DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTE 261
            +  AHRW  A P    A     L  D +  L  CGD+C    VEGA+LSGL AA  +  
Sbjct: 273 -WSDAHRWRYAIPN--DAVAGPPLDADRELPLYACGDWCAGGRVEGAVLSGLAAADHILN 329

Query: 262 IL 263
            L
Sbjct: 330 GL 331

Length = 331

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 266
COG3380331 Predicted NAD/FAD-dependent oxidoreductase [Genera 100.0
TIGR00562462 proto_IX_ox protoporphyrinogen oxidase. This prote 99.7
PRK12416463 protoporphyrinogen oxidase; Provisional 99.63
PLN02576496 protoporphyrinogen oxidase 99.6
PRK11883451 protoporphyrinogen oxidase; Reviewed 99.56
TIGR03467419 HpnE squalene-associated FAD-dependent desaturase. 99.33
KOG1276491 consensus Protoporphyrinogen oxidase [Coenzyme tra 99.27
COG1232444 HemY Protoporphyrinogen oxidase [Coenzyme metaboli 99.2
PLN02328 808 lysine-specific histone demethylase 1 homolog 99.0
PLN02268435 probable polyamine oxidase 99.0
PLN02529 738 lysine-specific histone demethylase 1 98.97
PRK07233434 hypothetical protein; Provisional 98.96
PF01593450 Amino_oxidase: Flavin containing amine oxidoreduct 98.84
TIGR02732474 zeta_caro_desat carotene 7,8-desaturase. Carotene 98.57
PLN02612567 phytoene desaturase 98.56
PLN03000 881 amine oxidase 98.49
TIGR02731453 phytoene_desat phytoene desaturase. Plants and cya 98.38
PRK07208479 hypothetical protein; Provisional 98.28
COG1231450 Monoamine oxidase [Amino acid transport and metabo 98.28
PLN02487569 zeta-carotene desaturase 98.17
PLN02676487 polyamine oxidase 97.63
PLN02976 1713 amine oxidase 97.52
PLN02568539 polyamine oxidase 97.35
TIGR02733492 desat_CrtD C-3',4' desaturase CrtD. Members of thi 97.2
TIGR02730493 carot_isom carotene isomerase. Members of this fam 97.07
TIGR02734502 crtI_fam phytoene desaturase. Phytoene is converte 96.29
KOG0029501 consensus Amine oxidase [Secondary metabolites bio 92.87
KOG0685498 consensus Flavin-containing amine oxidase [Coenzym 86.18
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=6.8e-58  Score=390.10  Aligned_cols=240  Identities=31%  Similarity=0.565  Sum_probs=206.6

Q ss_pred             CCccccccCCCCccccccCCCeeeeCChhHHHHHHHHHhCCccccccccceeeecCCceeeecccCCCCccEEeCCCchH
Q 024514            1 MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNS   80 (266)
Q Consensus         1 mstrr~~~~~~~~~~~DhGaqyfta~~~~f~~~~~~~~~~g~v~~W~~~~~~~~~~~~~~~~~~~~~~~~~yvg~pgm~~   80 (266)
                      |+|||.  +.+   .||||||||+++++.|.++|+.|.++|+|.+|+..++++.+++  ..  +..++.+ |||.|||++
T Consensus        40 lAtRRl--~~g---~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~~~~~~~~~~--~~--~~~d~~p-yvg~pgmsa  109 (331)
T COG3380          40 LATRRL--DGG---RFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTFTGDG--SP--PRGDEDP-YVGEPGMSA  109 (331)
T ss_pred             hheecc--CCc---cccccceeecCCchHHHHHHHHHHhCCceeeccccccccccCC--CC--CCCCCCc-cccCcchHH
Confidence            799998  555   4999999999999999999999999999999998888875442  11  1222233 999999999


Q ss_pred             HHHHHhcCCC------------------------------------CC------C-------Ch-hHHHHhccCCCccee
Q 024514           81 ICKALCHQPD------------------------------------LT------F-------AP-DLAVKLEEIPVNPCF  110 (266)
Q Consensus        81 l~~~l~~~~~------------------------------------~~------~-------~p-~l~~~l~~v~y~p~~  110 (266)
                      |+|+|+++++                                    ++      +       .| .++..+..|.|.|||
T Consensus       110 lak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~  189 (331)
T COG3380         110 LAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCW  189 (331)
T ss_pred             HHHHHhccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHH
Confidence            9999999880                                    00      0       23 367889999999999


Q ss_pred             eEeeccCCCCCCCCCcceEecCCCceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhcCCCCCChhhHHHHHHHHHH
Q 024514          111 ALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQ  190 (266)
Q Consensus       111 ~l~l~~~~~~~~~p~~g~~~~~~~~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~~~~~~~~~~~~~v~~~l~~  190 (266)
                      +++++|+++++ .|++|.++ ++++|+|+++|.+||||.|.++.||+|++++||+.|++.         +++++...|..
T Consensus       190 s~~lg~~q~l~-~P~~G~~v-dg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~---------~~e~~i~~l~a  258 (331)
T COG3380         190 SAVLGYPQPLD-RPWPGNFV-DGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDH---------PAEQVIVALRA  258 (331)
T ss_pred             HHHhcCCccCC-CCCCCccc-CCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcC---------CHHHHHHHHHH
Confidence            99999999987 79999665 556899999999999999988899999999999999998         57888888888


Q ss_pred             HHHhcCC-CCCCCcEEeEeccCCCCCCcccCCccCeee-cCCCCeEEeeCCCCCCChhHHHHHHHHHHHHHHHHh
Q 024514          191 EFQGTGL-SIPLPIFRKAHRWGSAFPAASIAKEERCLW-DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEIL  263 (266)
Q Consensus       191 ~~~~l~~-~l~~p~~~~~hRW~~A~p~~~~~~~~~~~~-~~~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~~l  263 (266)
                      ++..+.+ .++.|.++.+||||||+|++..+  .++++ +.+.+|++|||||.|++||+|++||+++|++|++.|
T Consensus       259 A~~~~~~~~~~~p~~s~~H~WrYA~P~~~~~--~~~L~ad~~~~l~~cGDwc~GgrVEgA~LSGlAaA~~i~~~L  331 (331)
T COG3380         259 AAQELDGDRLPEPDWSDAHRWRYAIPNDAVA--GPPLDADRELPLYACGDWCAGGRVEGAVLSGLAAADHILNGL  331 (331)
T ss_pred             hhhhccCCCCCcchHHHhhcccccccccccc--CCccccCCCCceeeecccccCcchhHHHhccHHHHHHHHhcC
Confidence            8887644 68899999999999999999876  46787 889999999999999999999999999999998764

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase Back     alignment and domain information
>PRK12416 protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>PLN02576 protoporphyrinogen oxidase Back     alignment and domain information
>PRK11883 protoporphyrinogen oxidase; Reviewed Back     alignment and domain information
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase Back     alignment and domain information
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] Back     alignment and domain information
>PLN02328 lysine-specific histone demethylase 1 homolog Back     alignment and domain information
>PLN02268 probable polyamine oxidase Back     alignment and domain information
>PLN02529 lysine-specific histone demethylase 1 Back     alignment and domain information
>PRK07233 hypothetical protein; Provisional Back     alignment and domain information
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) Back     alignment and domain information
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase Back     alignment and domain information
>PLN02612 phytoene desaturase Back     alignment and domain information
>PLN03000 amine oxidase Back     alignment and domain information
>TIGR02731 phytoene_desat phytoene desaturase Back     alignment and domain information
>PRK07208 hypothetical protein; Provisional Back     alignment and domain information
>COG1231 Monoamine oxidase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02487 zeta-carotene desaturase Back     alignment and domain information
>PLN02676 polyamine oxidase Back     alignment and domain information
>PLN02976 amine oxidase Back     alignment and domain information
>PLN02568 polyamine oxidase Back     alignment and domain information
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD Back     alignment and domain information
>TIGR02730 carot_isom carotene isomerase Back     alignment and domain information
>TIGR02734 crtI_fam phytoene desaturase Back     alignment and domain information
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
3kkj_A336 X-Ray Structure Of P. Syringae Q888a4 Oxidoreductas 7e-21
>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At Resolution 2.5a, Northeast Structural Genomics Consortium Target Psr10 Length = 336 Back     alignment and structure 
Iteration: 1

 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 126/291 (43%), Gaps = 67/291 (23%)
Query: 16  FDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFD--RVSKKFVNIQQDGMNKKYV 73
            D GA +FT  +      V++W++ G VAEW   L +F   R+S             ++V
Sbjct: 51  LDXGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPS------PDEQVRWV 104
Query: 74  GVPGMNSICKALCHQPDLTF---------------------------------------- 93
           G PG ++I +A      ++F                                        
Sbjct: 105 GKPGXSAITRAXRGDXPVSFSCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQAS 164
Query: 94  -----APDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGR 148
                AP LA  +  +  +P +A+ LAF  PL + P +G   QDS  L W   + SKP R
Sbjct: 165 TLLAAAPKLASVVAGVKXDPTWAVALAFETPLQT-PXQGCFVQDSP-LDWLARNRSKPER 222
Query: 149 SANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEF-QGTGLSIPLPIFRKA 207
               + W+LH+T+ ++R  +         +A+ ++V E +   F +    + P P+F  A
Sbjct: 223 DDTLDTWILHATSQWSRQNL---------DASREQVIEHLHGAFAELIDCTXPAPVFSLA 273
Query: 208 HRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASK 258
           HRW  A PA   A E   L D    + +CGD+C+S  VEGA LSG +AA +
Sbjct: 274 HRWLYARPAG--AHEWGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARR 322

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 4e-32
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 2e-28
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 2e-05
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 3e-05
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 5e-05
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342 Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470 Back     alignment and structure
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504 Back     alignment and structure
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query266
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 100.0
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 99.95
3kkj_A336 Amine oxidase, flavin-containing; oxidoreductase, 99.75
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 99.64
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 99.52
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 99.44
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 99.34
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 99.3
3nrn_A421 Uncharacterized protein PF1083; alpha-beta protein 99.08
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 98.93
2yg5_A453 Putrescine oxidase; oxidoreductase, flavin; HET: F 98.87
1s3e_A520 Amine oxidase [flavin-containing] B; human monoami 98.73
4dsg_A484 UDP-galactopyranose mutase; rossmann fold, flavin 98.72
2vvm_A495 Monoamine oxidase N; FAD, peroxisome, flavoprotein 98.57
1b37_A472 Protein (polyamine oxidase); flavin-dependent amin 98.51
2jae_A489 L-amino acid oxidase; oxidoreductase, dimerisation 98.45
4gut_A776 Lysine-specific histone demethylase 1B; histone de 98.29
4gde_A513 UDP-galactopyranose mutase; flavin adenine dinucle 98.15
2z3y_A662 Lysine-specific histone demethylase 1; chromatin, 98.09
2iid_A498 L-amino-acid oxidase; flavoenzyme, FAD binding dom 98.02
2xag_A852 Lysine-specific histone demethylase 1; amine oxida 98.01
4dgk_A501 Phytoene dehydrogenase; the FAD/NAD(P)-binding ros 97.7
2e1m_C181 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 97.57
1rsg_A516 FMS1 protein; FAD binding motif, oxidoreductase; H 96.79
2b9w_A424 Putative aminooxidase; isomerase, conjugated linol 95.83
3k7m_X431 6-hydroxy-L-nicotine oxidase; enantiomeric substra 94.97
2bi7_A384 UDP-galactopyranose mutase; FAD, flavoprotein, iso 90.6
3fpz_A326 Thiazole biosynthetic enzyme; FAD, mitochondrion, 89.38
1i8t_A367 UDP-galactopyranose mutase; rossman fold, FAD, con 89.15
1v0j_A399 UDP-galactopyranose mutase; flavoprotein, isomeras 88.74
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.3e-35  Score=267.32  Aligned_cols=241  Identities=20%  Similarity=0.278  Sum_probs=193.6

Q ss_pred             CCccccccCCCCccccccCCCeeeeCCh---hHHHHHHHHHhCCccccccccceeeecCCceeeecccCCCCccEEeCCC
Q 024514            1 MSQRRETSEDGNEMLFDHGAPFFTVTNN---DVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPG   77 (266)
Q Consensus         1 mstrr~~~~~~~~~~~DhGaqyfta~~~---~f~~~~~~~~~~g~v~~W~~~~~~~~~~~~~~~~~~~~~~~~~yvg~pg   77 (266)
                      |+|++.  +.+....+|||++||+++++   .|.++++.|.+.|++.+|........          ..+...+|+..+|
T Consensus        43 ~~~~~~--~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~g  110 (342)
T 3qj4_A           43 MTTACS--PHNPQCTADLGAQYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMV----------MKEGDCNFVAPQG  110 (342)
T ss_dssp             GCEEEC--SSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHHTTSCEECCSCEETCC----------C--CCEEEECTTC
T ss_pred             eeeeec--CCCCCceEecCCceEEcCchHHHHHHHHHHHHHhCCCeecCchhhccee----------ccCCccceecCCC
Confidence            345554  33344679999999999987   88899999999999999987543211          1234678999999


Q ss_pred             chHHHHHHhc--CC------------------------------C-----C------CCC--------hhHHHHhccCCC
Q 024514           78 MNSICKALCH--QP------------------------------D-----L------TFA--------PDLAVKLEEIPV  106 (266)
Q Consensus        78 m~~l~~~l~~--~~------------------------------~-----~------~~~--------p~l~~~l~~v~y  106 (266)
                      |+.+.+.|++  +.                              |     +      .+.        +...+.+++++|
T Consensus       111 ~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l~~~~~~~l~~~~~  190 (342)
T 3qj4_A          111 ISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISECQRQQLEAVSY  190 (342)
T ss_dssp             TTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHSCHHHHHHHHTCCB
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHHHHhcccccccCHHHHHHHhcCCc
Confidence            9999999987  43                              0     0      011        134678999999


Q ss_pred             cceeeEeeccCCC--CCCCCCcceEecCCCceEEEEeCCCCCCCC--CCCCcEEEEeChHHHHHhHhhcCCCCCChhhHH
Q 024514          107 NPCFALMLAFSEP--LSSIPVKGFSFQDSEVLSWAHCDSSKPGRS--ANSERWVLHSTADYARTVIAQTGLQKPSEATLK  182 (266)
Q Consensus       107 ~p~~~l~l~~~~~--~~~~p~~g~~~~~~~~l~wi~~~ssKpgr~--~~~~~~vl~ss~~~s~~~~~~~~~~~~~~~~~~  182 (266)
                      .||++|+++|+++  ++ .|++|+++++++.++|++++|+||+|.  +++.+||+|++..|+.++++.         +++
T Consensus       191 ~~~~~v~l~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~~~---------~~~  260 (342)
T 3qj4_A          191 SSRYALGLFYEAGTKID-VPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLEH---------SIE  260 (342)
T ss_dssp             CCEEEEEEECSSCC--C-CSCSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTTTS---------CHH
T ss_pred             cccEEEEEEECCCCccC-CceeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhhcC---------CHH
Confidence            9999999999975  33 678999887766799999999999976  234689999999999998876         679


Q ss_pred             HHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCCcccCCccCeee-cCCCCeEEeeCCCCCCChhHHHHHHHHHHHHHHH
Q 024514          183 KVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLW-DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTE  261 (266)
Q Consensus       183 ~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~~~~~~~~~~~~-~~~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~  261 (266)
                      ++.+.++++|+++++..+.|++.++|||+||+|++.+.....++. +..++|++||||+.|++||+||+||.++|++|+.
T Consensus       261 ~~~~~~~~~l~~~~g~~~~p~~~~v~rW~~a~p~~~~~~~~~~~~~~~~~~l~laGd~~~g~~v~~ai~sg~~aa~~i~~  340 (342)
T 3qj4_A          261 DVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAANCPGQMTLHHKPFLACGGDGFTQSNFDGCITSALCVLEALKN  340 (342)
T ss_dssp             HHHHHHHHHHHHHSCSCCCCSEEEEEEETTCSBSSCCSSSCSCEEEETTTEEEECSGGGSCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccCCCCCceeeeccccccccccccCCCcceeEecCCccEEEEccccCCCCccHHHHHHHHHHHHHHh
Confidence            999999999998876677899999999999999987632345665 7789999999999999999999999999999976


Q ss_pred             Hh
Q 024514          262 IL  263 (266)
Q Consensus       262 ~l  263 (266)
                      .|
T Consensus       341 ~l  342 (342)
T 3qj4_A          341 YI  342 (342)
T ss_dssp             C-
T ss_pred             hC
Confidence            53
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Back     alignment and structure
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Back     alignment and structure
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Back     alignment and structure
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Back     alignment and structure
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Back     alignment and structure
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Back     alignment and structure
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Back     alignment and structure
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Back     alignment and structure
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Back     alignment and structure
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Back     alignment and structure
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Back     alignment and structure
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Back     alignment and structure
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} Back     alignment and structure
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Back     alignment and structure
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Back     alignment and structure
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Back     alignment and structure
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Back     alignment and structure
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} Back     alignment and structure
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Back     alignment and structure
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query266
d2ivda2108 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 98.97
d1seza2112 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 98.74
d1seza1373 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 97.29
d2dw4a2449 Lysine-specific histone demethylase 1, LSD1 {Human 96.82
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 95.96
d2ivda1347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 93.99
d2iida1370 L-aminoacid oxidase {Malayan pit viper (Calloselas 92.41
d2v5za2112 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 87.51
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.97  E-value=4.3e-10  Score=82.94  Aligned_cols=102  Identities=18%  Similarity=0.226  Sum_probs=72.2

Q ss_pred             CCcceeeEeeccCCCC-CCCCCcceEecCC---CceEEEEeCCCC-CCCCCCCC-cEEEEeChHHHHHhHhhcCCCCCCh
Q 024514          105 PVNPCFALMLAFSEPL-SSIPVKGFSFQDS---EVLSWAHCDSSK-PGRSANSE-RWVLHSTADYARTVIAQTGLQKPSE  178 (266)
Q Consensus       105 ~y~p~~~l~l~~~~~~-~~~p~~g~~~~~~---~~l~wi~~~ssK-pgr~~~~~-~~vl~ss~~~s~~~~~~~~~~~~~~  178 (266)
                      .|.|+.+|.++|+++. +...-.|++++..   ..++ +.++|+| |+|+|++. .+++.....+..+..+.        
T Consensus         1 ~Ya~vavV~l~~~~~~~~~~~GfG~LVP~~e~~~~lg-~~f~S~~fp~r~p~~~~llrv~~Gg~~~~~~~~~--------   71 (108)
T d2ivda2           1 AYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLG-AIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQ--------   71 (108)
T ss_dssp             CBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCE-EEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGS--------
T ss_pred             CCCCEEEEEEEEcHHHCCCCCceEEEccCCCCCeEEE-EEEEccccccccCCCCEEEEEEeCCCCCcccccC--------
Confidence            4999999999999763 2123456687633   3555 7799999 99998542 23333333332222232        


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCC
Q 024514          179 ATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPA  216 (266)
Q Consensus       179 ~~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~  216 (266)
                       +++++.+.++++++++++....|.+..++||+.|+||
T Consensus        72 -~d~~l~~~a~~dL~~~lgi~~~P~~~~v~rw~~aiPQ  108 (108)
T d2ivda2          72 -DEDALAALAREELKALAGVTARPSFTRVFRWPLGIPQ  108 (108)
T ss_dssp             -CHHHHHHHHHHHHHHHHCCCSCCSEEEEEEESSCCBC
T ss_pred             -CHHHHHHHHHHHHHHHhCCCCCCcEEEeeECCCCcCc
Confidence             6789999999999987554468999999999999997
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure