Citrus Sinensis ID: 024515

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
MASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARAEEYFAKKRAAAAASDSTSA
ccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHHHccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHcccccccccHHHHHHccccccccccccccEEEEcccEEccEEEEEEEEEcHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccccccc
ccccEEccccccccccccccccccEccccccccccccccEccccccccEEEEEcccHHHHHHHcccccccccEEEHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccEEEEEEHHHHHHcccccccEccHHHHHHccccccccccccccEEEEccccEEEEEEEEHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccccc
MASLLSVTanslsfpstpfkgnvktlmpkppsslcvplkvqqrnkppqltvLNQAASASasaivgsgpvtnvrfrlnnlgpqpgsrkrgkrkgrgiaagqgnscgfgmrgqksrsgpgvrkgfeggqmplyrripklrgiaggmhaglpkyvpvnlkdieaagflegdeVSLETLKkkglinpsgrerklplkilgdgelskkLNFKARAFSTSAKEKLEAagctltvlpgrkkwvkpSVAKNLARAEEYFAKKRAAAaasdstsa
MASLLSVTanslsfpstpfkgnvKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIVGSGPVTNVRfrlnnlgpqpgsrkrgkrkgrgiaagqgnscgfgmrgqksrsgpgvrkgfeggqmplYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETlkkkglinpsgrerklplkilgdgelskkLNFKARAFSTsakekleaagctltvlpgrkkwvkpSVAKNLARAEEYFAKKRaaaaasdstsa
MASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQaasasasaIVGSGPVTNVRFRLNNLGPQPGSrkrgkrkgrgIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLaraeeyfakkraaaaaSDSTSA
*******************************************************************************************************************************MPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLK***************LKILG*******LNFKARAF******KLEAAGCTLTVLPGRKKWVKPSVAKNLAR********************
*****SVTANSLSFPSTPFKGNV**LMPKPPSS********************************************NLGP**********K*RGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPG***********************************
********ANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIVGSGPVTNVRFRLNNLGP**************IAAGQGNSCGFGM**********VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARAEEYFA**************
****LSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIV******************************************************VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARAEEYFAKKR***********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARAEEYFAKKRAAAAASDSTSA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query266 2.2.26 [Sep-21-2011]
P31165258 50S ribosomal protein L15 N/A no 0.943 0.972 0.739 2e-98
P25873277 50S ribosomal protein L15 yes no 0.921 0.884 0.681 1e-92
B7K231159 50S ribosomal protein L15 yes no 0.537 0.899 0.531 2e-33
B7KI04154 50S ribosomal protein L15 yes no 0.537 0.928 0.525 2e-32
A8G744152 50S ribosomal protein L15 yes no 0.533 0.934 0.529 6e-32
A3PF30152 50S ribosomal protein L15 yes no 0.533 0.934 0.535 8e-32
Q318K1152 50S ribosomal protein L15 yes no 0.545 0.953 0.519 1e-31
Q5N0U8147 50S ribosomal protein L15 yes no 0.541 0.979 0.528 1e-31
P31160147 50S ribosomal protein L15 yes no 0.541 0.979 0.528 1e-31
Q7V9X9151 50S ribosomal protein L15 yes no 0.541 0.953 0.516 2e-31
>sp|P31165|RK15_PEA 50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum GN=RPL15 PE=2 SV=1 Back     alignment and function desciption
 Score =  358 bits (919), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 193/261 (73%), Positives = 214/261 (81%), Gaps = 10/261 (3%)

Query: 2   ASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASAS 61
           ASL+ V+  SL   ++PFKGNVKTL+ KP   LC  LK+Q+     +++V+N+AASA   
Sbjct: 4   ASLIPVS--SLPSLASPFKGNVKTLVAKP--CLCPCLKIQRTKL--RVSVVNKAASAYNV 57

Query: 62  AIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRK 121
              G     NVRFRL+NLGPQPGSRKR KRKGRGIAAGQG SCGFGMRGQKSRSGPG+ +
Sbjct: 58  KSSGE----NVRFRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMR 113

Query: 122 GFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 181
           GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +I
Sbjct: 114 GFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVI 173

Query: 182 NPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVA 241
           NPSGRERKLPLKIL DGELSKKL  KA AFSTSAKEKLE AGC+L VLPGRKKWVKPSVA
Sbjct: 174 NPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVLPGRKKWVKPSVA 233

Query: 242 KNLARAEEYFAKKRAAAAASD 262
           KNLARAEEYFAKKR    AS+
Sbjct: 234 KNLARAEEYFAKKRGGETASE 254

Pisum sativum (taxid: 3888)
>sp|P25873|RK15_ARATH 50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2 Back     alignment and function description
>sp|B7K231|RL15_CYAP8 50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 8801) GN=rplO PE=3 SV=1 Back     alignment and function description
>sp|B7KI04|RL15_CYAP7 50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 7424) GN=rplO PE=3 SV=1 Back     alignment and function description
>sp|A8G744|RL15_PROM2 50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplO PE=3 SV=1 Back     alignment and function description
>sp|A3PF30|RL15_PROM0 50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplO PE=3 SV=1 Back     alignment and function description
>sp|Q318K1|RL15_PROM9 50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplO1 PE=3 SV=1 Back     alignment and function description
>sp|Q5N0U8|RL15_SYNP6 50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplO PE=3 SV=1 Back     alignment and function description
>sp|P31160|RL15_SYNE7 50S ribosomal protein L15 OS=Synechococcus elongatus (strain PCC 7942) GN=rplO PE=3 SV=2 Back     alignment and function description
>sp|Q7V9X9|RL15_PROMA 50S ribosomal protein L15 OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=rplO PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query266
359472952262 PREDICTED: 50S ribosomal protein L15, ch 0.958 0.973 0.718 1e-102
351725845256 uncharacterized protein LOC100306183 [Gl 0.906 0.941 0.752 3e-98
400986258 RecName: Full=50S ribosomal protein L15, 0.943 0.972 0.739 1e-96
388494588256 unknown [Lotus japonicus] 0.951 0.988 0.713 4e-96
388521735257 unknown [Medicago truncatula] 0.921 0.953 0.720 9e-95
189096136257 Chain N, Homology Model For The Spinach 0.939 0.972 0.735 1e-94
297818112275 hypothetical protein ARALYDRAFT_484358 [ 0.909 0.88 0.699 2e-93
15230931277 50S ribosomal protein L15 [Arabidopsis t 0.921 0.884 0.681 6e-91
449434618268 PREDICTED: 50S ribosomal protein L15, ch 0.981 0.973 0.750 7e-91
224101737256 predicted protein [Populus trichocarpa] 0.932 0.968 0.773 1e-90
>gi|359472952|ref|XP_002279311.2| PREDICTED: 50S ribosomal protein L15, chloroplastic-like [Vitis vinifera] gi|297737813|emb|CBI27014.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/270 (71%), Positives = 222/270 (82%), Gaps = 15/270 (5%)

Query: 1   MASLLSVTANS-------LSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLN 53
           MA+LLSV++         L  PS+PFKGNV+ L   P   L + L+V+++ +   + V +
Sbjct: 1   MAALLSVSSAPSSRTPLFLHHPSSPFKGNVRNLKANPCQFLTIKLEVKEKVRKSGVVVAS 60

Query: 54  QAASASASAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKS 113
           Q + +S         V NVRFRL+NLGPQPGSRK+ KRKGRGI+AGQGNSCGFGMRGQKS
Sbjct: 61  QGSPSSV--------VDNVRFRLDNLGPQPGSRKKAKRKGRGISAGQGNSCGFGMRGQKS 112

Query: 114 RSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLE 173
           RSGPGV KGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGF EG+EVSL+
Sbjct: 113 RSGPGVMKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFQEGEEVSLD 172

Query: 174 TLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRK 233
           +LKKKGLINPSGRER+LPLKILG G+LS KLN KARAFS+SAKEKLEAAGC++TVLPGRK
Sbjct: 173 SLKKKGLINPSGRERRLPLKILGAGDLSVKLNIKARAFSSSAKEKLEAAGCSITVLPGRK 232

Query: 234 KWVKPSVAKNLARAEEYFAKKRAAAAASDS 263
           KW+KPSV KNLARAEEYFAKKRAAA  + S
Sbjct: 233 KWLKPSVIKNLARAEEYFAKKRAAAEQASS 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|351725845|ref|NP_001235059.1| uncharacterized protein LOC100306183 [Glycine max] gi|255627797|gb|ACU14243.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|400986|sp|P31165.1|RK15_PEA RecName: Full=50S ribosomal protein L15, chloroplastic; AltName: Full=CL15; Flags: Precursor gi|20867|emb|CAA77595.1| Plastid ribosomal protein CL15 [Pisum sativum] Back     alignment and taxonomy information
>gi|388494588|gb|AFK35360.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388521735|gb|AFK48929.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|189096136|pdb|3BBO|N Chain N, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Back     alignment and taxonomy information
>gi|297818112|ref|XP_002876939.1| hypothetical protein ARALYDRAFT_484358 [Arabidopsis lyrata subsp. lyrata] gi|297322777|gb|EFH53198.1| hypothetical protein ARALYDRAFT_484358 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15230931|ref|NP_189221.1| 50S ribosomal protein L15 [Arabidopsis thaliana] gi|21431836|sp|P25873.2|RK15_ARATH RecName: Full=50S ribosomal protein L15, chloroplastic; AltName: Full=CL15; Flags: Precursor gi|13877945|gb|AAK44050.1|AF370235_1 putative 50S ribosomal protein L15, chloroplast precursor [Arabidopsis thaliana] gi|15983454|gb|AAL11595.1|AF424601_1 AT3g25920/MPE11_7 [Arabidopsis thaliana] gi|9279597|dbj|BAB01055.1| chloroplast 50S ribosomal protein L15 [Arabidopsis thaliana] gi|16323474|gb|AAL15231.1| putative 50S ribosomal protein L15, chloroplast precursor [Arabidopsis thaliana] gi|21536722|gb|AAM61054.1| 50S ribosomal protein L15, chloroplast precursor [Arabidopsis thaliana] gi|332643570|gb|AEE77091.1| 50S ribosomal protein L15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449434618|ref|XP_004135093.1| PREDICTED: 50S ribosomal protein L15, chloroplastic-like [Cucumis sativus] gi|449512847|ref|XP_004164157.1| PREDICTED: 50S ribosomal protein L15, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224101737|ref|XP_002312401.1| predicted protein [Populus trichocarpa] gi|222852221|gb|EEE89768.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query266
TAIR|locus:2092155277 RPL15 "ribosomal protein L15" 0.906 0.870 0.646 8.1e-76
TIGR_CMR|CHY_2290146 CHY_2290 "ribosomal protein L1 0.541 0.986 0.455 4.2e-24
TIGR_CMR|DET_0493153 DET_0493 "ribosomal protein L1 0.522 0.908 0.416 2.4e-21
TIGR_CMR|BA_0129146 BA_0129 "ribosomal protein L15 0.545 0.993 0.406 4.9e-21
TIGR_CMR|GSU_2838148 GSU_2838 "ribosomal protein L1 0.530 0.952 0.403 5.1e-19
UNIPROTKB|P02413144 rplO "50S ribosomal subunit pr 0.518 0.958 0.389 4.1e-17
TIGR_CMR|CPS_0620144 CPS_0620 "ribosomal protein L1 0.515 0.951 0.364 1.8e-16
TIGR_CMR|SPO_0505157 SPO_0505 "ribosomal protein L1 0.541 0.917 0.358 3.3e-15
UNIPROTKB|P95071146 rplO "50S ribosomal protein L1 0.537 0.979 0.348 4.2e-15
UNIPROTKB|Q9KP03144 rplO "50S ribosomal protein L1 0.515 0.951 0.364 6.9e-15
TAIR|locus:2092155 RPL15 "ribosomal protein L15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 163/252 (64%), Positives = 180/252 (71%)

Query:     1 MASLLSVTANSLS--------FPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPP-QLTV 51
             MA+ LS+++N L+          ST FKGNV  L   P  S  + LK+ Q  K   Q   
Sbjct:     1 MATPLSISSNPLTSRHCYRLHLSSTSFKGNVSVLGANP--SQILSLKLNQTLKTRNQQQF 58

Query:    52 LNQXXXXXXXXIVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQ 111
                           S  V   RFRL+NLGPQPGS          I+AGQG SCGFGMRGQ
Sbjct:    59 ARPLVVVSQTAATSSAVVAPERFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQ 118

Query:   112 KSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVS 171
             KSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EGDEVS
Sbjct:   119 KSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVS 178

Query:   172 LETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPG 231
             LETLK+KGLINPSGRERKLPLKILG GELS KL FKARAFST AKEKLEA+GCTLTVLPG
Sbjct:   179 LETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFSTQAKEKLEASGCTLTVLPG 238

Query:   232 RKKWVKPSVAKN 243
             RKKWVKPSVAKN
Sbjct:   239 RKKWVKPSVAKN 250
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;TAS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015934 "large ribosomal subunit" evidence=IEA
GO:0000311 "plastid large ribosomal subunit" evidence=TAS
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA
TIGR_CMR|CHY_2290 CHY_2290 "ribosomal protein L15" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0493 DET_0493 "ribosomal protein L15" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0129 BA_0129 "ribosomal protein L15" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2838 GSU_2838 "ribosomal protein L15" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P02413 rplO "50S ribosomal subunit protein L15" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0620 CPS_0620 "ribosomal protein L15" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0505 SPO_0505 "ribosomal protein L15" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P95071 rplO "50S ribosomal protein L15" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KP03 rplO "50S ribosomal protein L15" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P25873RK15_ARATHNo assigned EC number0.68180.92100.8844yesno
P31165RK15_PEANo assigned EC number0.73940.94360.9728N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
PRK05592146 PRK05592, rplO, 50S ribosomal protein L15; Reviewe 4e-58
TIGR01071145 TIGR01071, rplO_bact, ribosomal protein L15, bacte 6e-44
COG0200152 COG0200, RplO, Ribosomal protein L15 [Translation, 3e-35
pfam00828122 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/ 2e-25
PRK06419148 PRK06419, rpl15p, 50S ribosomal protein L15P; Revi 8e-06
PRK04005111 PRK04005, PRK04005, 50S ribosomal protein L18e; Pr 1e-04
COG1727122 COG1727, RPL18A, Ribosomal protein L18E [Translati 0.001
PTZ00160147 PTZ00160, PTZ00160, 60S ribosomal protein L27a; Pr 0.003
>gnl|CDD|235523 PRK05592, rplO, 50S ribosomal protein L15; Reviewed Back     alignment and domain information 
 Score =  181 bits (462), Expect = 4e-58
 Identities = 83/155 (53%), Positives = 100/155 (64%), Gaps = 10/155 (6%)

Query: 75  RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 134
           +LN L P PGSRK  KR GRGI +G G + G G +GQK+RSG GVR GFEGGQMPLYRR+
Sbjct: 2   KLNELKPAPGSRKARKRVGRGIGSGLGKTAGRGHKGQKARSGGGVRPGFEGGQMPLYRRL 61

Query: 135 PKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKI 194
           PK RG          +Y  VNL D+    F EG EV+LE LK  GLI    R+    +K+
Sbjct: 62  PK-RGFTNIFRK---EYAVVNLGDLNK--FEEGTEVTLEALKAAGLI----RKNIKGVKV 111

Query: 195 LGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 229
           LG+GEL+KKL  KA  FS SAKE +EAAG  +  +
Sbjct: 112 LGNGELTKKLTVKAHKFSKSAKEAIEAAGGKVEEI 146

Length = 146
>gnl|CDD|233260 TIGR01071, rplO_bact, ribosomal protein L15, bacterial/organelle Back     alignment and domain information
>gnl|CDD|223278 COG0200, RplO, Ribosomal protein L15 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216140 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/L15 Back     alignment and domain information
>gnl|CDD|235799 PRK06419, rpl15p, 50S ribosomal protein L15P; Reviewed Back     alignment and domain information
>gnl|CDD|235196 PRK04005, PRK04005, 50S ribosomal protein L18e; Provisional Back     alignment and domain information
>gnl|CDD|224641 COG1727, RPL18A, Ribosomal protein L18E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|185489 PTZ00160, PTZ00160, 60S ribosomal protein L27a; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 266
PRK05592146 rplO 50S ribosomal protein L15; Reviewed 100.0
TIGR01071145 rplO_bact ribosomal protein L15, bacterial/organel 100.0
COG0200152 RplO Ribosomal protein L15 [Translation, ribosomal 100.0
KOG0846274 consensus Mitochondrial/chloroplast ribosomal prot 100.0
PF00828129 Ribosomal_L18e: Ribosomal protein L18e/L15; InterP 99.96
PRK06419148 rpl15p 50S ribosomal protein L15P; Reviewed 99.93
PTZ00160147 60S ribosomal protein L27a; Provisional 99.91
PRK04005111 50S ribosomal protein L18e; Provisional 99.5
KOG1742147 consensus 60s ribosomal protein L15/L27 [Translati 99.39
COG1727122 RPL18A Ribosomal protein L18E [Translation, riboso 98.93
PTZ00469187 60S ribosomal subunit protein L18; Provisional 98.46
PTZ00195198 60S ribosomal protein L18; Provisional 98.2
KOG1714188 consensus 60s ribosomal protein L18 [Translation, 84.08
>PRK05592 rplO 50S ribosomal protein L15; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=3.6e-53  Score=358.65  Aligned_cols=146  Identities=56%  Similarity=0.890  Sum_probs=136.9

Q ss_pred             eecCCCCCCCCCCcccceeeccccCCCCCcccCCCCCCCCCCCCCCCCCccCCCCCeEeecceecCCCCCCCCCCCeeee
Q 024515           74 FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVP  153 (266)
Q Consensus        74 m~L~nL~p~~GarKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~GFEGGQtPl~rRlPK~rGf~~g~~~~r~~y~~  153 (266)
                      |+||||+|++|+++++||+|||++||+|||||||||||++|+|+.+++||||||||||||||| +||++   .++.+|.+
T Consensus         1 m~L~~l~~~~ga~~~~kRvGRG~gsG~GkT~GrG~KGqksR~g~~~~~gFEGGQ~Pl~rrlPk-~Gf~~---~~~~~y~~   76 (146)
T PRK05592          1 MKLNELKPAPGSRKARKRVGRGIGSGLGKTAGRGHKGQKARSGGGVRPGFEGGQMPLYRRLPK-RGFTN---IFRKEYAV   76 (146)
T ss_pred             CccccCcCCCCCcCCCccEecCCCCCCCCcCCCCCCcccCCCCCCCCCccccCCCceEEEccc-CCcCC---CCcceEEE
Confidence            899999999999999999999999999999999999999999988999999999999999999 59986   36789999


Q ss_pred             EecchhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeEEEEEecCHHHHHHHHHcCCEEEEe
Q 024515          154 VNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL  229 (266)
Q Consensus       154 INL~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~Ika~~fSksAkekIEaAGGsV~~~  229 (266)
                      |||++|+.  ++++++||+++|++.|+|+..    ..+|||||+|+|+++|+|+++.||++|+|+||+|||+|+++
T Consensus        77 VNL~~L~~--~~~~~~I~~~~L~~~gli~~~----~~~vKvLg~G~l~~~i~I~a~~~S~sA~e~IE~aGG~v~~~  146 (146)
T PRK05592         77 VNLGDLNK--FEEGTEVTLEALKAAGLIRKN----IKGVKVLGNGELTKKLTVKAHKFSKSAKEAIEAAGGKVEEI  146 (146)
T ss_pred             EeHHHhhc--cCCCCeECHHHHHHCCcccCC----CcceEEEecCccccCEEEEEEccCHHHHHHHHHcCCEEEeC
Confidence            99999985  788999999999999999753    35899999999999999999999999999999999999763

>TIGR01071 rplO_bact ribosomal protein L15, bacterial/organelle Back     alignment and domain information
>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0846 consensus Mitochondrial/chloroplast ribosomal protein L15/L10 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed Back     alignment and domain information
>PTZ00160 60S ribosomal protein L27a; Provisional Back     alignment and domain information
>PRK04005 50S ribosomal protein L18e; Provisional Back     alignment and domain information
>KOG1742 consensus 60s ribosomal protein L15/L27 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00469 60S ribosomal subunit protein L18; Provisional Back     alignment and domain information
>PTZ00195 60S ribosomal protein L18; Provisional Back     alignment and domain information
>KOG1714 consensus 60s ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
3bbo_N257 Homology Model For The Spinach Chloroplast 50s Subu 1e-81
1p85_J144 Real Space Refined Coordinates Of The 50s Subunit F 7e-15
3fik_L143 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 8e-15
2gya_J140 Structure Of The 50s Subunit Of A Pre-Translocation 1e-13
2j01_P150 Structure Of The Thermus Thermophilus 70s Ribosome 7e-13
3fin_P146 T. Thermophilus 70s Ribosome In Complex With Mrna, 5e-12
1nkw_J156 Crystal Structure Of The Large Ribosomal Subunit Fr 3e-05
1pnu_J141 Crystal Structure Of A Streptomycin Dependent Ribos 1e-04
>pdb|3BBO|N Chain N, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 257 Back     alignment and structure 
Iteration: 1

 Score =  299 bits (766), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/243 (68%), Positives = 186/243 (76%), Gaps = 11/243 (4%)
Query: 2   ASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQXXXXXXX 61
           ASL+ V+  SL   ++PFKGNVKTL+ KP   LC  LK+Q+     +++V+N+       
Sbjct: 4   ASLIPVS--SLPSLASPFKGNVKTLVAKP--CLCPCLKIQRTKL--RVSVVNKAASAYNV 57
Query: 62  XIVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRK 121
              G     NV FRL+NLGPQPGS          IAAGQG SCGFGMRGQKSRSGPG+ +
Sbjct: 58  KSSGE----NV-FRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMR 112
Query: 122 GFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 181
           GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +I
Sbjct: 113 GFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVI 172
Query: 182 NPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVA 241
           NPSGRERKLPLKIL DGELSKKL  KA AFSTSAKEKLE AGC+L VLPGRKKWVKPSVA
Sbjct: 173 NPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVLPGRKKWVKPSVA 232
Query: 242 KNL 244
           KNL
Sbjct: 233 KNL 235
>pdb|1P85|J Chain J, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 144 Back     alignment and structure
>pdb|3FIK|L Chain L, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 143 Back     alignment and structure
>pdb|2GYA|J Chain J, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 140 Back     alignment and structure
>pdb|2J01|P Chain P, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 150 Back     alignment and structure
>pdb|3FIN|P Chain P, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 146 Back     alignment and structure
>pdb|1NKW|J Chain J, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 156 Back     alignment and structure
>pdb|1PNU|J Chain J, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 141 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
3bbo_N257 Ribosomal protein L15; large ribosomal subunit, sp 2e-85
3r8s_L143 50S ribosomal protein L15; protein biosynthesis, R 3e-58
3v2d_P150 50S ribosomal protein L15; ribosome associated inh 8e-56
2zjr_I156 50S ribosomal protein L15; ribosome, large ribosom 5e-53
1vq8_L165 50S ribosomal protein L15P; ribosome 50S, protein- 5e-25
4a17_K149 L29, RPL27A, 60S ribosomal protein L27A; eukaryoti 4e-12
2zkr_l148 60S ribosomal protein L27A; protein-RNA complex, 6 8e-10
3iz5_O144 60S ribosomal protein L27A (L15P); eukaryotic ribo 8e-10
1vq8_O116 50S ribosomal protein L18E; ribosome 50S, protein- 9e-09
3o58_Y149 60S ribosomal protein L28; ribosomal RNA and prote 3e-06
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 257 Back     alignment and structure
 Score =  254 bits (650), Expect = 2e-85
 Identities = 183/265 (69%), Positives = 208/265 (78%), Gaps = 9/265 (3%)

Query: 1   MASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASA 60
           M++   +  +SL   ++PFKGNVKTL+ KP    C+   ++ +    +++V+N+AASA  
Sbjct: 1   MSAASLIPVSSLPSLASPFKGNVKTLVAKP----CLCPCLKIQRTKLRVSVVNKAASAYN 56

Query: 61  SAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVR 120
               G        FRL+NLGPQPGSRKR KRKGRGIAAGQG SCGFGMRGQKSRSGPG+ 
Sbjct: 57  VKSSGEN-----VFRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIM 111

Query: 121 KGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGL 180
           +GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +
Sbjct: 112 RGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRV 171

Query: 181 INPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSV 240
           INPSGRERKLPLKIL DGELSKKL  KA AFSTSAKEKLE AGC+L VLPGRKKWVKPSV
Sbjct: 172 INPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVLPGRKKWVKPSV 231

Query: 241 AKNLARAEEYFAKKRAAAAASDSTS 265
           AKNLARAEEYFAKKR    AS+   
Sbjct: 232 AKNLARAEEYFAKKRGGETASEPAP 256
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L 2i2v_L ... Length = 143 Back     alignment and structure
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ... Length = 150 Back     alignment and structure
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M Length = 156 Back     alignment and structure
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ... Length = 165 Back     alignment and structure
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K Length = 149 Back     alignment and structure
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 148 Back     alignment and structure
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ... Length = 116 Back     alignment and structure
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 1s1i_V 3jyw_V Length = 149 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query266
3bbo_N257 Ribosomal protein L15; large ribosomal subunit, sp 100.0
3v2d_P150 50S ribosomal protein L15; ribosome associated inh 100.0
3r8s_L143 50S ribosomal protein L15; protein biosynthesis, R 100.0
2zjr_I156 50S ribosomal protein L15; ribosome, large ribosom 100.0
1vq8_L165 50S ribosomal protein L15P; ribosome 50S, protein- 100.0
2zkr_l148 60S ribosomal protein L27A; protein-RNA complex, 6 100.0
3j21_L147 50S ribosomal protein L15P; archaea, archaeal, KIN 99.94
4a17_K149 L29, RPL27A, 60S ribosomal protein L27A; eukaryoti 99.92
3o58_Y149 60S ribosomal protein L28; ribosomal RNA and prote 99.88
3iz5_O144 60S ribosomal protein L27A (L15P); eukaryotic ribo 99.83
3j21_P120 50S ribosomal protein L18E; archaea, archaeal, KIN 99.76
1vq8_O116 50S ribosomal protein L18E; ribosome 50S, protein- 99.69
2zkr_o188 60S ribosomal protein L18; protein-RNA complex, 60 99.54
3jyw_O121 60S ribosomal protein L18(A); eukaryotic ribosome, 99.51
3iz5_R188 60S ribosomal protein L18 (L18E); eukaryotic ribos 99.38
3izc_R186 60S ribosomal protein RPL18 (L18E); eukaryotic rib 99.35
4a17_N181 RPL18, 60S ribosomal protein L5; eukaryotic riboso 99.35
1vq8_L165 50S ribosomal protein L15P; ribosome 50S, protein- 94.02
4a17_K149 L29, RPL27A, 60S ribosomal protein L27A; eukaryoti 88.65
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
Probab=100.00  E-value=1.3e-80  Score=565.35  Aligned_cols=255  Identities=74%  Similarity=1.121  Sum_probs=164.7

Q ss_pred             CCccccccccCCCCCCCCccccccccCCCCCCCccccceecccCCCCceEEEecccccccccccCCCCCCCCceecCCCC
Q 024515            1 MASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIVGSGPVTNVRFRLNNLG   80 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~L~nL~   80 (266)
                      ||+++++|  |+|+|+||||||+++|.++||+.+|  ++++++++  |++|||++|++++.     ..++.++|+||||+
T Consensus         3 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~m~L~~L~   71 (257)
T 3bbo_N            3 AASLIPVS--SLPSLASPFKGNVKTLVAKPCLCPC--LKIQRTKL--RVSVVNKAASAYNV-----KSSGENVFRLDNLG   71 (257)
T ss_dssp             -------------------------------------------------------------------------CCCSSSC
T ss_pred             cccccccc--cCCCCCCcccccccccccccccccc--hhhhccCc--cceeEeeccccccc-----ccCCCCceecccCc
Confidence            89999999  6678999999999999999999888  77787755  99999999997543     34788899999999


Q ss_pred             CCCCCCcccceeeccccCCCCCcccCCCCCCCCCCCCCCCCCccCCCCCeEeecceecCCCCCCCCCCCeeeeEecchhh
Q 024515           81 PQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIE  160 (266)
Q Consensus        81 p~~GarKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~GFEGGQtPl~rRlPK~rGf~~g~~~~r~~y~~INL~~L~  160 (266)
                      |++|++++++|+|||+|||+|||||||||||++|+|+.+++|||||||||||||||+|||+++++.++++|.+|||++||
T Consensus        72 p~~Gs~k~kkRvGRG~GSG~GKT~GRGhKGQkaRsG~~~r~GFEGGQmPl~rRlPK~rGF~n~~~~~r~~y~~VNL~kL~  151 (257)
T 3bbo_N           72 PQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIE  151 (257)
T ss_dssp             CCCCCCSCCCCCSSCCCCSCSSSCSSSCCCCGGGTSSCSSTTCCSSCSSTTSCCCCCSSCCCCCSSCCSSSSCSCSSCCS
T ss_pred             CCCCCccCCcCCcCcCCCCCCCcCCCCCCCCcCcCCCCCCCceecCCCcchhhcccccccCCccccCcceeeeEeHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999779998765556789999999998


Q ss_pred             hcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeEEEEEecCHHHHHHHHHcCCEEEEecCccccccccc
Q 024515          161 AAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSV  240 (266)
Q Consensus       161 ~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~Ika~~fSksAkekIEaAGGsV~~~~~~k~~~~~~~  240 (266)
                      +++|+++++||+++|++.|+|+..++...+++||||+|+|+++|+|+++.||++|+|+||++||+|++++.+++|+++++
T Consensus       152 ~lr~~eg~~Idle~L~~aGlI~~~gr~~~~~VKVLG~GeLtkkLtVkA~~fSksA~eKIEaAGG~v~~i~~~~~~~~~~~  231 (257)
T 3bbo_N          152 NAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVLPGRKKWVKPSV  231 (257)
T ss_dssp             CSSTTTTTTTCCSSCCSSSCSSSSCCCCSCCCCCCCSSCCCSSCCCCSSCCTGGGTTSSTTTTCCEECCCSSSSSSSCSC
T ss_pred             hcccCCCCEeCHHHHHhCCcccccccccCccEEEEeCCccCCCeEEEEEecCHHHHHHHHHcCCEEEEeecccccchhhh
Confidence            64589999999999999999976433335689999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHHHHHHhhcchhhccCCCCC
Q 024515          241 AKNLARAEEYFAKKRAAAAASDSTSA  266 (266)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (266)
                      ++|++||+|||++|+++|+++||+|+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (257)
T 3bbo_N          232 AKNLARAEEYFAKKRGGETASEPAPV  257 (257)
T ss_dssp             SCEESSCCC-----------------
T ss_pred             cccchhhHHhhhhhcccccccCCCCC
Confidence            99999999999999999999999985
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ... Back     alignment and structure
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ... Back     alignment and structure
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M Back     alignment and structure
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ... Back     alignment and structure
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K Back     alignment and structure
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V Back     alignment and structure
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ... Back     alignment and structure
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O Back     alignment and structure
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N Back     alignment and structure
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ... Back     alignment and structure
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 266
d2gycj1140 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {E 2e-36
d2zjri1141 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {D 7e-32
d2j01p1146 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {T 5e-30
d1vqol1150 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {A 1e-21
d1vqoo1115 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeo 5e-11
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]} Length = 140 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]

 Score =  124 bits (312), Expect = 2e-36
 Identities = 59/150 (39%), Positives = 80/150 (53%), Gaps = 11/150 (7%)

Query: 77  NNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPK 136
           N L P  GS+K GKR GRGI +G G + G G +GQKSRSG GVR+GFEGGQMPLYRR+PK
Sbjct: 1   NTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPK 60

Query: 137 LRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILG 196
                            + L D+     +EG  V L TLK   +I      +    K++ 
Sbjct: 61  FG----FTSRKAAITAEIRLSDLA---KVEGGVVDLNTLKAANIIG----IQIEFAKVIL 109

Query: 197 DGELSKKLNFKARAFSTSAKEKLEAAGCTL 226
            GE++  +  +    +  A+  +EAAG  +
Sbjct: 110 AGEVTTPVTVRGLRVTKGARAAIEAAGGKI 139
>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]} Length = 141 Back     information, alignment and structure
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Length = 146 Back     information, alignment and structure
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150 Back     information, alignment and structure
>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 115 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query266
d2zjri1141 Ribosomal protein L15 (L15p) {Deinococcus radiodur 100.0
d2j01p1146 Ribosomal protein L15 (L15p) {Thermus thermophilus 100.0
d2gycj1140 Ribosomal protein L15 (L15p) {Escherichia coli [Ta 100.0
d1vqol1150 Ribosomal protein L15 (L15p) {Archaeon Haloarcula 99.97
d1vqoo1115 Ribosomal protein L18e {Archaeon Haloarcula marism 99.02
d1vqol1150 Ribosomal protein L15 (L15p) {Archaeon Haloarcula 80.91
>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=1.7e-47  Score=317.44  Aligned_cols=140  Identities=38%  Similarity=0.598  Sum_probs=128.3

Q ss_pred             CCCCCCCCCCcccceeeccccCCCCCcccCCCCCCCCCCCCCCCCCccCCCCCeEeecceecCCCCCCCCCCCeeeeEec
Q 024515           77 NNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNL  156 (266)
Q Consensus        77 ~nL~p~~GarKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~GFEGGQtPl~rRlPK~rGf~~g~~~~r~~y~~INL  156 (266)
                      |||+|+|||+++++|+|||++ |+|||||||||||++|+|+..++||||||||||+|+|| +||++    ++.+|.+|||
T Consensus         1 h~L~~~~gs~~~~kR~gRG~g-g~Gkt~GrG~KGqk~RsG~~~~~gfeGGQ~Pl~rrlPK-rGf~~----~~~~~~~inl   74 (141)
T d2zjri1           1 HDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPK-RGFNN----VGTTYEVVKL   74 (141)
T ss_dssp             CCCCCCSSTTTCCCCSSSCCC-CCCSCSSSCCCCSSSSSCCSCCCSCSCCSSSSTTTSCC-CCCCC----CCCCCCEECH
T ss_pred             CCCCCCCCCccCcccccCCCC-CCCCCCCCCCCCCCCCCCCCCCCceecccccceecCCc-cCCCc----ccceEEEEEh
Confidence            799999999999999999986 99999999999999999999999999999999999999 59974    3568999999


Q ss_pred             chhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeEEEEEecCHHHHHHHHHcCCEEEEe
Q 024515          157 KDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL  229 (266)
Q Consensus       157 ~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~Ika~~fSksAkekIEaAGGsV~~~  229 (266)
                      ++|+.  + +..+||++.|.+.++|...    ..+|||||+|+|+++|+|+++.||++|+++||+|||+|+++
T Consensus        75 ~~l~~--~-~~~~i~~~~L~~~~li~~~----~~~VKiLg~Gel~~kl~I~v~~~S~sA~~~IE~aGG~V~l~  140 (141)
T d2zjri1          75 SQLQD--L-EDTTFDRDTLEAYRLVRRK----NRPVKLLASGEISRAVTVHVDAASAAAIKAVEAAGGRVVLP  140 (141)
T ss_dssp             HHHTT--S-CCCCCCTTTTHHHHHCCCC----SSCCEECCCCCCCCCCCCCCSEECHHHHHHHGGGSCCCCCC
T ss_pred             hhhhc--c-cccchhhhhhhhhceeccC----CCCeEEccCCcccCCEEEEEEEeCHHHHHHHHHCCCEEEee
Confidence            99985  3 3467999999999999753    46899999999999999999999999999999999999865
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure