Citrus Sinensis ID: 024544

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKV
cccccccccHHHHHHHHHHcccEEEEccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccEEEcccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHcc
cccccccHHHHHHHHHHHcccEEEEccHHHHHHHHcccccccccHcHHHHHHcHHHHHHHHHHHHHccccEEEEccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccccEEEEEEcccccEccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHcc
mvsgsngttsFMTDFLqkcggysvvdggFATELerhgadlndplwsakclvssphlvrkVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRcmkdswdftgsgrissrpVLVAASVGsygayladgseysgdygdavsLETLKEFHRRRVLILANSgadliafeTIPNKLEAKAYAELLEeegitipawfsfnskdginvvsgdsILECASIADSCEQVVAVGinctsprfiHGLILSVRKV
mvsgsngttSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCtsprfihglilsvrkv
MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNkleakayaelleeeGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKV
**********FMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSV***
****************QKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFT***RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKV
********TSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKV
*****NGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTG*GRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRK*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query266 2.2.26 [Sep-21-2011]
Q8LAX0347 Homocysteine S-methyltran yes no 0.973 0.746 0.776 1e-119
Q9M1W4333 Homocysteine S-methyltran no no 0.951 0.759 0.721 1e-107
P56707338 Selenocysteine methyltran N/A no 0.973 0.766 0.707 1e-106
Q4VNK0346 Selenocysteine Se-methylt N/A no 0.984 0.757 0.690 1e-104
Q9FUM9339 Homocysteine S-methyltran N/A no 0.973 0.764 0.669 1e-100
Q9FUM8338 Homocysteine S-methyltran N/A no 0.966 0.760 0.662 8e-99
Q9FUM7342 Homocysteine S-methyltran N/A no 0.917 0.713 0.660 4e-96
A4ZGQ8326 Homocysteine S-methyltran N/A no 0.962 0.785 0.536 6e-79
Q9FUN0323 Homocysteine S-methyltran N/A no 0.913 0.752 0.542 1e-78
Q9SDL7326 Homocysteine S-methyltran no no 0.943 0.769 0.550 2e-78
>sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2 Back     alignment and function desciption
 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/259 (77%), Positives = 232/259 (89%)

Query: 8   TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
           T+S MTDFL+KCGGY+VVDGGFATEL+RHGAD+NDPLWSAKCL++SPHLV KVHLDYL++
Sbjct: 9   TSSLMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLES 68

Query: 68  GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
           GANIIITASYQATIQGF AKG S  EAE LLRRSVEI  EAREI+Y+RC K SWDF  +G
Sbjct: 69  GANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAG 128

Query: 128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
           + S RP+LVAASVGSYGAYLADGSEYSG YGD+VS ETLK+FHRRRV ILA SGADLIAF
Sbjct: 129 KASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAF 188

Query: 188 ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247
           ETIPNKLEA+AYA+LLEEE I IPAWFSF SKDG++V  GDS++ECA +ADSC+ VVA+G
Sbjct: 189 ETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAKVADSCKNVVAIG 248

Query: 248 INCTSPRFIHGLILSVRKV 266
           INCT+PR+IH LI+S+R++
Sbjct: 249 INCTAPRYIHALIISLRQM 267
Catalyzes methyl transfer from S-methylmethionine (SMM) to adenosyl-L-homocysteine (AdoMet). SMM degradation (by HMT-1, HMT-2 and HMT-3) and biosynthesis (by MMT1) constitute the SMM cycle in plants, which is probably required to achieve short term control of AdoMet level.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0
>sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1 Back     alignment and function description
>sp|P56707|SMTA_ASTBI Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1 Back     alignment and function description
>sp|Q4VNK0|SMTA_BRAOT Selenocysteine Se-methyltransferase OS=Brassica oleracea var. italica GN=SMT PE=1 SV=1 Back     alignment and function description
>sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FUM7|HMT4_MAIZE Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1 Back     alignment and function description
>sp|A4ZGQ8|HMT1_BRAOT Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica GN=HMT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FUN0|HMT1_MAIZE Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query266
255552095348 5-methyltetrahydrofolate:homocysteine me 0.969 0.741 0.868 1e-130
224107975338 homocysteine s-methyltransferase [Populu 0.977 0.769 0.85 1e-129
449522026338 PREDICTED: homocysteine S-methyltransfer 0.969 0.763 0.813 1e-122
449455288338 PREDICTED: homocysteine S-methyltransfer 0.969 0.763 0.810 1e-121
224085515341 homocysteine s-methyltransferase [Populu 0.973 0.759 0.783 1e-120
452090884 368 homocysteine S-methyltransferase, partia 0.954 0.690 0.796 1e-119
297835280347 homocysteine S-methyltransferase 3 [Arab 0.973 0.746 0.779 1e-119
363807204341 uncharacterized protein LOC100811127 [Gl 0.969 0.756 0.802 1e-118
255638530341 unknown [Glycine max] 0.969 0.756 0.802 1e-118
18403505347 homocysteine S-methyltransferase 3 [Arab 0.973 0.746 0.776 1e-118
>gi|255552095|ref|XP_002517092.1| 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis] gi|223543727|gb|EEF45255.1| 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/258 (86%), Positives = 241/258 (93%)

Query: 8   TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
           T SFM+DFLQKCGGY+V+DGGFATELERHGADLNDPLWSAKCL+SSPHLVR+VHLDY+DA
Sbjct: 9   TRSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRRVHLDYIDA 68

Query: 68  GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
           GANII+TASYQATIQGFEAKG STEEAE LLRRSVEIACEAREIYYD C K SWD    G
Sbjct: 69  GANIILTASYQATIQGFEAKGLSTEEAEQLLRRSVEIACEAREIYYDNCTKGSWDLMEDG 128

Query: 128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
           ++S  PVLVAAS+GSYGAYLADGSEYSGDYGDAVS++TLK+FHRRR+ ILA SGADLIAF
Sbjct: 129 KMSRHPVLVAASIGSYGAYLADGSEYSGDYGDAVSIQTLKDFHRRRLQILAKSGADLIAF 188

Query: 188 ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247
           ETIPNKLEAKAYAELLEEEGI IPAWFSFNSKDGINVVSGDSILECASIADS +QVVAVG
Sbjct: 189 ETIPNKLEAKAYAELLEEEGINIPAWFSFNSKDGINVVSGDSILECASIADSSKQVVAVG 248

Query: 248 INCTSPRFIHGLILSVRK 265
           INCT PRFIHGLILS+R+
Sbjct: 249 INCTPPRFIHGLILSMRE 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224107975|ref|XP_002314674.1| homocysteine s-methyltransferase [Populus trichocarpa] gi|222863714|gb|EEF00845.1| homocysteine s-methyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449522026|ref|XP_004168029.1| PREDICTED: homocysteine S-methyltransferase 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449455288|ref|XP_004145385.1| PREDICTED: homocysteine S-methyltransferase 3-like [Cucumis sativus] gi|449472065|ref|XP_004153485.1| PREDICTED: homocysteine S-methyltransferase 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224085515|ref|XP_002307602.1| homocysteine s-methyltransferase [Populus trichocarpa] gi|222857051|gb|EEE94598.1| homocysteine s-methyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|452090884|gb|AGF95112.1| homocysteine S-methyltransferase, partial [Prunus persica] Back     alignment and taxonomy information
>gi|297835280|ref|XP_002885522.1| homocysteine S-methyltransferase 3 [Arabidopsis lyrata subsp. lyrata] gi|297331362|gb|EFH61781.1| homocysteine S-methyltransferase 3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|363807204|ref|NP_001242352.1| uncharacterized protein LOC100811127 [Glycine max] gi|255644435|gb|ACU22722.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255638530|gb|ACU19573.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|18403505|ref|NP_566715.1| homocysteine S-methyltransferase 3 [Arabidopsis thaliana] gi|50400551|sp|Q8LAX0.2|HMT3_ARATH RecName: Full=Homocysteine S-methyltransferase 3; AltName: Full=S-methylmethionine:homocysteine methyltransferase 3; Short=AtHMT-3; Short=SMM:Hcy S-methyltransferase 3 gi|9966515|gb|AAG10301.1|AF297394_1 homocysteine S-methyltransferase [Arabidopsis thaliana] gi|9279692|dbj|BAB01249.1| cysteine methyltransferase [Arabidopsis thaliana] gi|26451099|dbj|BAC42654.1| putative selenocysteine methyltransferase [Arabidopsis thaliana] gi|28950917|gb|AAO63382.1| At3g22740 [Arabidopsis thaliana] gi|332643151|gb|AEE76672.1| homocysteine S-methyltransferase 3 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query266
TAIR|locus:2094419347 HMT3 "homocysteine S-methyltra 0.973 0.746 0.729 2.3e-101
UNIPROTKB|Q4VNK0346 SMT "Selenocysteine Se-methylt 0.984 0.757 0.660 3.9e-92
TAIR|locus:2077234333 HMT2 "homocysteine methyltrans 0.947 0.756 0.687 8.1e-92
UNIPROTKB|A4ZGQ8326 HMT1 "Homocysteine S-methyltra 0.962 0.785 0.494 1.7e-66
TAIR|locus:2092120326 HMT-1 [Arabidopsis thaliana (t 0.943 0.769 0.507 7.4e-66
UNIPROTKB|Q47690310 mmuM [Escherichia coli K-12 (t 0.796 0.683 0.453 6.6e-42
ZFIN|ZDB-GENE-030131-9545311 zgc:172121 "zgc:172121" [Danio 0.860 0.736 0.381 8e-37
FB|FBgn0032727331 CG10623 [Drosophila melanogast 0.868 0.697 0.328 1.8e-30
FB|FBgn0032726331 CG10621 [Drosophila melanogast 0.879 0.706 0.308 4.9e-30
CGD|CAL0004923311 SAM4 [Candida albicans (taxid: 0.477 0.408 0.357 1.3e-15
TAIR|locus:2094419 HMT3 "homocysteine S-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 189/259 (72%), Positives = 218/259 (84%)

Query:     8 TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
             T+S MTDFL+KCGGY+VVDGGFATEL+RHGAD+NDPLWSAKCL++SPHLV KVHLDYL++
Sbjct:     9 TSSLMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLES 68

Query:    68 GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
             GANIIITASYQATIQGF AKG S  EAE LLRRSVEI  EAREI+Y+RC K SWDF  +G
Sbjct:    69 GANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAG 128

Query:   128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
             + S RP+LVAASVGSYGAYLADGSEYSG YGD+VS ETLK+FHRRRV ILA SGADLIAF
Sbjct:   129 KASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAF 188

Query:   188 ETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247
             ETIPN               I IPAWFSF SKDG++V  GDS++ECA +ADSC+ VVA+G
Sbjct:   189 ETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAKVADSCKNVVAIG 248

Query:   248 INCTSPRFIHGLILSVRKV 266
             INCT+PR+IH LI+S+R++
Sbjct:   249 INCTAPRYIHALIISLRQM 267
GO:0005737 "cytoplasm" evidence=ISM
GO:0008898 "homocysteine S-methyltransferase activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=IDA
UNIPROTKB|Q4VNK0 SMT "Selenocysteine Se-methyltransferase" [Brassica oleracea var. italica (taxid:36774)] Back     alignment and assigned GO terms
TAIR|locus:2077234 HMT2 "homocysteine methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A4ZGQ8 HMT1 "Homocysteine S-methyltransferase 1" [Brassica oleracea var. italica (taxid:36774)] Back     alignment and assigned GO terms
TAIR|locus:2092120 HMT-1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q47690 mmuM [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9545 zgc:172121 "zgc:172121" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0032727 CG10623 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0032726 CG10621 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
CGD|CAL0004923 SAM4 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P56707SMTA_ASTBI2, ., 1, ., 1, ., n, 30.70760.97360.7662N/Ano
Q8LAX0HMT3_ARATH2, ., 1, ., 1, ., 1, 00.77600.97360.7463yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.963
4th Layer2.1.1.100.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
PLN02489335 PLN02489, PLN02489, homocysteine S-methyltransfera 0.0
PRK09485304 PRK09485, mmuM, homocysteine methyltransferase; Pr 1e-112
pfam02574303 pfam02574, S-methyl_trans, Homocysteine S-methyltr 3e-72
COG2040300 COG2040, MHT1, Homocysteine/selenocysteine methyla 1e-70
COG0646311 COG0646, MetH, Methionine synthase I (cobalamin-de 1e-19
PRK08645 612 PRK08645, PRK08645, bifunctional homocysteine S-me 9e-18
TIGR02082 1178 TIGR02082, metH, 5-methyltetrahydrofolate--homocys 6e-09
PRK09490 1229 PRK09490, metH, B12-dependent methionine synthase; 2e-08
PRK07534 336 PRK07534, PRK07534, methionine synthase I; Validat 2e-06
>gnl|CDD|215269 PLN02489, PLN02489, homocysteine S-methyltransferase Back     alignment and domain information 
 Score =  505 bits (1303), Expect = 0.0
 Identities = 196/266 (73%), Positives = 230/266 (86%), Gaps = 1/266 (0%)

Query: 1   MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKV 60
                   +S + D L++ GG +V+DGGFATELERHGADLNDPLWSAKCL++SPHL+RKV
Sbjct: 1   GGYVLPQMSSLLEDLLRQAGGCAVIDGGFATELERHGADLNDPLWSAKCLITSPHLIRKV 60

Query: 61  HLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDS 120
           HLDYL+AGA+IIITASYQATIQGFE++G S EE+E LLR+SVEIACEAR+I++D+C K S
Sbjct: 61  HLDYLEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGS 120

Query: 121 WDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANS 180
               G   +S RP+LVAAS+GSYGAYLADGSEYSGDYG +V+LE LK+FHRRR+ +LA +
Sbjct: 121 TSRPG-RELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEA 179

Query: 181 GADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC 240
           G DLIAFETIPNKLEA+AY ELLEEE I IPAW SFNSKDG+NVVSGDS+LECASIADSC
Sbjct: 180 GPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSC 239

Query: 241 EQVVAVGINCTSPRFIHGLILSVRKV 266
           ++VVAVGINCT PRFIHGLILS+RKV
Sbjct: 240 KKVVAVGINCTPPRFIHGLILSIRKV 265

Length = 335
>gnl|CDD|181899 PRK09485, mmuM, homocysteine methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|217114 pfam02574, S-methyl_trans, Homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|224951 COG2040, MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|223719 COG0646, MetH, Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236321 PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>gnl|CDD|236539 PRK09490, metH, B12-dependent methionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|236045 PRK07534, PRK07534, methionine synthase I; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 266
PLN02489335 homocysteine S-methyltransferase 100.0
PRK09485304 mmuM homocysteine methyltransferase; Provisional 100.0
KOG1579317 consensus Homocysteine S-methyltransferase [Amino 100.0
COG2040300 MHT1 Homocysteine/selenocysteine methylase (S-meth 100.0
PF02574305 S-methyl_trans: Homocysteine S-methyltransferase; 100.0
PRK07534 336 methionine synthase I; Validated 100.0
COG0646311 MetH Methionine synthase I (cobalamin-dependent), 100.0
PRK09490 1229 metH B12-dependent methionine synthase; Provisiona 100.0
PRK08645 612 bifunctional homocysteine S-methyltransferase/5,10 100.0
TIGR02082 1178 metH 5-methyltetrahydrofolate--homocysteine methyl 100.0
PRK15063428 isocitrate lyase; Provisional 94.68
PRK11320292 prpB 2-methylisocitrate lyase; Provisional 94.51
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 94.16
TIGR02317285 prpB methylisocitrate lyase. Members of this famil 94.08
cd06556240 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup 93.75
TIGR02320285 PEP_mutase phosphoenolpyruvate phosphomutase. A cl 93.66
TIGR02319294 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos 93.06
TIGR00222263 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 92.02
COG0159265 TrpA Tryptophan synthase alpha chain [Amino acid t 91.94
PF13714238 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB 91.59
PRK05692287 hydroxymethylglutaryl-CoA lyase; Provisional 91.54
cd06557254 KPHMT-like Ketopantoate hydroxymethyltransferase ( 91.29
PF00682237 HMGL-like: HMGL-like of this family is not conserv 91.0
PLN02591250 tryptophan synthase 90.87
COG0826 347 Collagenase and related proteases [Posttranslation 90.58
PRK00311264 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 90.43
COG0646311 MetH Methionine synthase I (cobalamin-dependent), 89.78
TIGR00612 346 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho 89.06
PLN02746347 hydroxymethylglutaryl-CoA lyase 89.0
PLN02424 332 ketopantoate hydroxymethyltransferase 88.46
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 88.05
PF01729169 QRPTase_C: Quinolinate phosphoribosyl transferase, 88.0
COG2224433 AceA Isocitrate lyase [Energy production and conve 87.74
COG2513289 PrpB PEP phosphonomutase and related enzymes [Carb 86.01
PRK12677 384 xylose isomerase; Provisional 85.66
PRK00366 360 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s 84.94
PRK08645 612 bifunctional homocysteine S-methyltransferase/5,10 84.67
cd07938274 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, 84.2
PF02574305 S-methyl_trans: Homocysteine S-methyltransferase; 83.98
COG0821 361 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat 83.96
cd07939259 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and 83.85
PRK09485304 mmuM homocysteine methyltransferase; Provisional 83.18
PRK07896289 nicotinate-nucleotide pyrophosphorylase; Provision 83.06
TIGR01463340 mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi 82.83
COG5309305 Exo-beta-1,3-glucanase [Carbohydrate transport and 82.31
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 81.93
PLN02495 385 oxidoreductase, acting on the CH-CH group of donor 81.61
PLN02489335 homocysteine S-methyltransferase 81.38
PF04551 359 GcpE: GcpE protein; InterPro: IPR004588 This prote 81.23
PRK05848273 nicotinate-nucleotide pyrophosphorylase; Provision 81.2
cd07947279 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt 81.13
PRK13111258 trpA tryptophan synthase subunit alpha; Provisiona 81.12
TIGR02660 365 nifV_homocitr homocitrate synthase NifV. This fami 80.97
PRK12999 1146 pyruvate carboxylase; Reviewed 80.64
PF03437 254 BtpA: BtpA family; InterPro: IPR005137 Photosystem 80.6
smart00633254 Glyco_10 Glycosyl hydrolase family 10. 80.27
cd07941273 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 80.24
TIGR01496257 DHPS dihydropteroate synthase. This model represen 80.11
>PLN02489 homocysteine S-methyltransferase Back     alignment and domain information 
Probab=100.00  E-value=2.9e-64  Score=466.88  Aligned_cols=258  Identities=75%  Similarity=1.239  Sum_probs=228.1

Q ss_pred             CchhHHHHHHHhcCCeEEeecchhhhHhhhCCCCCCccccccccccCchhHHHHhhhhhhccccEEEechhhhhhhhhhc
Q 024544            7 GTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEA   86 (266)
Q Consensus         7 ~~~~~l~~~l~~~~~~lllDGg~gT~L~~~g~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~   86 (266)
                      .|++.|++++++.++++||||||||+|+++|++.+.|+||+.+|+++||+|+++|++|++||||||+|||||+|+.+|++
T Consensus         7 ~~~~~~~~~l~~~~~~lilDGgmGT~Le~~g~~~~~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~   86 (335)
T PLN02489          7 QMSSLLEDLLRQAGGCAVIDGGFATELERHGADLNDPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFES   86 (335)
T ss_pred             hhhHHHHHHHHhcCCEEEEEChHHHHHHhCCCCCCCCccchhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHH
Confidence            47888999998555699999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHHHH
Q 024544           87 KGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL  166 (266)
Q Consensus        87 ~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~  166 (266)
                      +|++.+++++++++||++|++|+++|.+...... ....+....+++++|+|||||+|+++.+|+||+|+|++.++++++
T Consensus        87 ~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~  165 (335)
T PLN02489         87 RGLSREESETLLRKSVEIACEARDIFWDKCQKGS-TSRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKL  165 (335)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccccccccCCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHH
Confidence            9998788999999999999999988743210000 000001112457999999999999999999999999976899999


Q ss_pred             HHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhc
Q 024544          167 KEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV  246 (266)
Q Consensus       167 ~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~av  246 (266)
                      +++|++|+++|+++|||+|+|||||++.|++++++++++.+.++|+||||+++++++|.+|+++.+++..+.+..++++|
T Consensus       166 ~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~i  245 (335)
T PLN02489        166 KDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAV  245 (335)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEE
Confidence            99999999999999999999999999999999999999876579999999999999999999999999888764578999


Q ss_pred             ccccCCcchhhhhheeeee
Q 024544          247 GINCTSPRFIHGLILSVRK  265 (266)
Q Consensus       247 GiNC~~p~~~~~~l~~l~~  265 (266)
                      |+||++|+.+.++|+++++
T Consensus       246 GiNC~~p~~~~~~l~~l~~  264 (335)
T PLN02489        246 GINCTPPRFIHGLILSIRK  264 (335)
T ss_pred             EecCCCHHHHHHHHHHHHh
Confidence            9999999999999987754

>PRK09485 mmuM homocysteine methyltransferase; Provisional Back     alignment and domain information
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2 Back     alignment and domain information
>PRK07534 methionine synthase I; Validated Back     alignment and domain information
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09490 metH B12-dependent methionine synthase; Provisional Back     alignment and domain information
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>PRK15063 isocitrate lyase; Provisional Back     alignment and domain information
>PRK11320 prpB 2-methylisocitrate lyase; Provisional Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>TIGR02317 prpB methylisocitrate lyase Back     alignment and domain information
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds Back     alignment and domain information
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase Back     alignment and domain information
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase Back     alignment and domain information
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase Back     alignment and domain information
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] Back     alignment and domain information
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B Back     alignment and domain information
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional Back     alignment and domain information
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway Back     alignment and domain information
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed Back     alignment and domain information
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase Back     alignment and domain information
>PLN02746 hydroxymethylglutaryl-CoA lyase Back     alignment and domain information
>PLN02424 ketopantoate hydroxymethyltransferase Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>COG2224 AceA Isocitrate lyase [Energy production and conversion] Back     alignment and domain information
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK12677 xylose isomerase; Provisional Back     alignment and domain information
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed Back     alignment and domain information
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain Back     alignment and domain information
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2 Back     alignment and domain information
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] Back     alignment and domain information
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PRK09485 mmuM homocysteine methyltransferase; Provisional Back     alignment and domain information
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family Back     alignment and domain information
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>PLN02495 oxidoreductase, acting on the CH-CH group of donors Back     alignment and domain information
>PLN02489 homocysteine S-methyltransferase Back     alignment and domain information
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli Back     alignment and domain information
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>TIGR02660 nifV_homocitr homocitrate synthase NifV Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane Back     alignment and domain information
>smart00633 Glyco_10 Glycosyl hydrolase family 10 Back     alignment and domain information
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>TIGR01496 DHPS dihydropteroate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
1umy_A 407 Bhmt From Rat Liver Length = 407 3e-05
1lt7_A 406 Oxidized Homo Sapiens Betaine-Homocysteine S-Methyl 3e-05
1q85_A 566 Cobalamin-Dependent Methionine Synthase (1-566) Fro 1e-04
1q7m_A 566 Cobalamin-Dependent Methionine Synthase (Meth) From 1e-04
>pdb|1UMY|A Chain A, Bhmt From Rat Liver Length = 407 Back     alignment and structure 
Iteration: 1

 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 26 DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
          DGGF   LE+ G     P W+ +  V  P  VR++H ++L AG+N++ T ++ A+    E
Sbjct: 26 DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86 AKG 88
           +G
Sbjct: 85 NRG 87
>pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocysteine S-Methyltransferase In Complex With Four Sm(Iii) Ions Length = 406 Back     alignment and structure
>pdb|1Q85|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From Thermotoga Maritima (Cd2+ Complex, Se-Met) Length = 566 Back     alignment and structure
>pdb|1Q7M|A Chain A, Cobalamin-Dependent Methionine Synthase (Meth) From Thermotoga Maritima (Oxidized, Monoclinic) Length = 566 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
1lt8_A 406 Betaine-homocysteine methyltransferase; homocystei 8e-33
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Length = 406 Back     alignment and structure
 Score =  122 bits (309), Expect = 8e-33
 Identities = 50/249 (20%), Positives = 88/249 (35%), Gaps = 41/249 (16%)

Query: 7   GTTSFMTDFLQKCGGYSVV--DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDY 64
           G        L++     +V  DGGF   LE+ G     P W+ +  V  P  VR++H ++
Sbjct: 5   GGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREF 63

Query: 65  LDAGANIIITASYQATIQGFEAKGFSTEE---AEALLRRSVEIACEAREIYYDRCMKDSW 121
           L AG+N++ T ++ A+    E +G    E    + +   + +IA +  +           
Sbjct: 64  LRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAAADIARQVAD----------- 112

Query: 122 DFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSG 181
                        LVA  V    +YL+             S   +K+   +++ +     
Sbjct: 113 ---------EGDALVAGGVSQTPSYLSA-----------KSETEVKKVFLQQLEVFMKKN 152

Query: 182 ADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCE 241
            D +  E   +  EA    E L   G  + A  +         + G    E A       
Sbjct: 153 VDFLIAEYFEHVEEAVWAVETLIASGKPVAATMAI---GPEGDLHGVPPGEAAVRLVKA- 208

Query: 242 QVVAVGINC 250
               +G+NC
Sbjct: 209 GASIIGVNC 217
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Length = 566 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query266
1lt8_A 406 Betaine-homocysteine methyltransferase; homocystei 100.0
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 100.0
3eoo_A298 Methylisocitrate lyase; seattle structural genomic 95.84
3lye_A307 Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre 95.71
1xg4_A295 Probable methylisocitrate lyase; 2-methylisocitrat 95.32
3fa4_A302 2,3-dimethylmalate lyase; alpha/beta barrel, helix 94.7
1zlp_A318 PSR132, petal death protein; TIM-barrel, helix swa 94.59
3lg3_A435 Isocitrate lyase; conserved, CD, proteomics eviden 94.19
1ydo_A307 HMG-COA lyase; TIM-barrel protein, structural geno 94.11
1f8m_A429 Isocitrate lyase, ICL; alpha-beta barrel, helix-sw 93.9
3i4e_A439 Isocitrate lyase; structural genomics, seattle str 93.83
3eol_A433 Isocitrate lyase; seattle structural center for in 93.41
2cw6_A298 Hydroxymethylglutaryl-COA lyase, mitochondrial; HM 92.77
2ze3_A275 DFA0005; organic waste LEFT-OVER decomposition, al 92.51
2ftp_A302 Hydroxymethylglutaryl-COA lyase; structural genomi 92.29
3rmj_A 370 2-isopropylmalate synthase; LEUA, truncation, neis 91.86
3noy_A 366 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; 91.78
3vnd_A267 TSA, tryptophan synthase alpha chain; psychrophili 91.5
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 91.03
1s2w_A295 Phosphoenolpyruvate phosphomutase; phosphonopyruva 90.88
3ewb_X293 2-isopropylmalate synthase; LEUA, structural genom 90.42
3ble_A337 Citramalate synthase from leptospira interrogans; 90.31
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 90.28
2hjp_A290 Phosphonopyruvate hydrolase; phosporus-Ca cleavage 90.27
3ih1_A305 Methylisocitrate lyase; alpha-beta structure, TIM- 89.69
3nav_A271 Tryptophan synthase alpha chain; alpha subunit, st 89.54
1lt8_A 406 Betaine-homocysteine methyltransferase; homocystei 89.02
3eeg_A325 2-isopropylmalate synthase; 11106D, beta barrel, P 86.75
3b8i_A287 PA4872 oxaloacetate decarboxylase; alpha/beta barr 84.87
4g9p_A 406 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; 84.32
3tha_A252 Tryptophan synthase alpha chain; structural genomi 83.27
1to3_A304 Putative aldolase YIHT; beta-alpha barrel, structu 82.77
4ay7_A348 Methylcobalamin\: coenzyme M methyltransferase; TI 82.14
3m47_A228 Orotidine 5'-phosphate decarboxylase; orotidine 5' 82.0
4fxs_A 496 Inosine-5'-monophosphate dehydrogenase; structural 81.4
2nx9_A 464 Oxaloacetate decarboxylase 2, subunit alpha; carbo 81.27
3vni_A294 Xylose isomerase domain protein TIM barrel; D-psic 80.42
3usb_A511 Inosine-5'-monophosphate dehydrogenase; structural 80.37
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Back     alignment and structure
Probab=100.00  E-value=3.6e-55  Score=413.28  Aligned_cols=220  Identities=22%  Similarity=0.308  Sum_probs=189.3

Q ss_pred             chhHHHHHHHhcCCeEEeecchhhhHhhhCCCCCCccccccccccCchhHHHHhhhhhhccccEEEechhhhhhhhhhcc
Q 024544            8 TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAK   87 (266)
Q Consensus         8 ~~~~l~~~l~~~~~~lllDGg~gT~L~~~g~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~   87 (266)
                      +.+.|.+.|++ ++++||||||||+|+++|++. .++|++.+++++||.|++||++|++||||||+||||++|+.+|.++
T Consensus         9 ~~~~l~~~L~~-~~ilIlDGgmGT~L~~~G~~~-~~~ws~~l~l~~Pe~V~~iH~~Yl~AGAdII~TNTf~A~~~~l~~~   86 (406)
T 1lt8_A            9 AKKGILERLNA-GEIVIGDGGFVFALEKRGYVK-AGPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENR   86 (406)
T ss_dssp             --CCHHHHHHT-TCCEECCCCHHHHHHHHTSSC-TTTCCCTHHHHCHHHHHHHHHHHHHTTCSEEECSCTTCSSCC----
T ss_pred             chHHHHHHHhc-CCEEEEeCccchHHHHCCCCC-CcccchHhhccCHHHHHHHHHHHHHhCccceeccccccCHHHHHhc
Confidence            44568999982 359999999999999999976 3589999999999999999999999999999999999999999999


Q ss_pred             CCCH---HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHH
Q 024544           88 GFST---EEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLE  164 (266)
Q Consensus        88 g~~~---~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~  164 (266)
                      |++.   +++++||++||+|||+|+++                    .+++|||||||+|.++.           .++++
T Consensus        87 G~~~~~~~~~~eln~~Av~LAreAa~~--------------------~~~~VAGsIGP~g~~l~-----------~~s~e  135 (406)
T 1lt8_A           87 GNYVLEKISGQEVNEAAADIARQVADE--------------------GDALVAGGVSQTPSYLS-----------AKSET  135 (406)
T ss_dssp             ---------CHHHHHHHHHHHHHHHTT--------------------TTCEEEEEECCCHHHHT-----------TCHHH
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHHhc--------------------CCCEEEEEcCCcccccC-----------CCCHH
Confidence            9742   45789999999999999742                    25899999999998552           37899


Q ss_pred             HHHHHhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhh
Q 024544          165 TLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVV  244 (266)
Q Consensus       165 e~~~~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~  244 (266)
                      +++++|++|+++|+++|||+|++|||+++.|++++++++++.+  +|||+||+|.++|+ ++|+++++++..+.+ .+++
T Consensus       136 el~~~~~eqi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~--lPv~iS~T~~~~G~-l~G~~~~~~~~~l~~-~~~~  211 (406)
T 1lt8_A          136 EVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASG--KPVAATMAIGPEGD-LHGVPPGEAAVRLVK-AGAS  211 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCSEEEECCCSCHHHHHHHHHHHGGGT--SCEEEEECCBTTBC-TTCCCHHHHHHHHHT-TTCS
T ss_pred             HHHHHHHHHHHHHhhCCCCEEEEcccCCHHHHHHHHHHHHHhC--CcEEEEEEECCCCC-cCCCcHHHHHHHhhc-CCCC
Confidence            9999999999999999999999999999999999999999865  99999999988888 899999999988876 4799


Q ss_pred             hcccccC-Ccchhhhhheeee
Q 024544          245 AVGINCT-SPRFIHGLILSVR  264 (266)
Q Consensus       245 avGiNC~-~p~~~~~~l~~l~  264 (266)
                      +|||||+ +|+.|.++|+.++
T Consensus       212 avGvNC~~gP~~~~~~l~~l~  232 (406)
T 1lt8_A          212 IIGVNCHFDPTISLKTVKLMK  232 (406)
T ss_dssp             EEEEESSSCHHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHHH
Confidence            9999997 8999999998775
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 Back     alignment and structure
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A Back     alignment and structure
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A Back     alignment and structure
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A Back     alignment and structure
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} Back     alignment and structure
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A Back     alignment and structure
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Back     alignment and structure
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A Back     alignment and structure
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} Back     alignment and structure
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* Back     alignment and structure
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Back     alignment and structure
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} Back     alignment and structure
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} Back     alignment and structure
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A Back     alignment and structure
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} Back     alignment and structure
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A Back     alignment and structure
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 Back     alignment and structure
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Back     alignment and structure
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A* Back     alignment and structure
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} Back     alignment and structure
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 Back     alignment and structure
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A Back     alignment and structure
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... Back     alignment and structure
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Back     alignment and structure
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* Back     alignment and structure
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 266
d1lt7a_ 361 c.1.26.1 (A:) Betaine-homocysteine S-methyltransfe 2e-23
d3bofa2300 c.1.26.1 (A:1-300) Cobalamin-dependent methionine 1e-22
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 361 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Betaine-homocysteine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (237), Expect = 2e-23
 Identities = 41/227 (18%), Positives = 79/227 (34%), Gaps = 31/227 (13%)

Query: 24  VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83
           + DGGF   LE+ G     P W+ +  V  P  VR++H ++L AG+N++ T ++ A+   
Sbjct: 14  IGDGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDK 72

Query: 84  FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
            E +G        L + S +   EA      +   +                        
Sbjct: 73  LENRG-----NYVLEKISGQEVNEAAADIARQVADEGDALV------------------- 108

Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELL 203
               A G   +  Y  A S   +K+   +++ +      D +  E   +  EA    E L
Sbjct: 109 ----AGGVSQTPSYLSAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETL 164

Query: 204 EEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINC 250
              G  + A  +   +  ++            +  +   ++ V  + 
Sbjct: 165 IASGKPVAATMAIGPEGDLHG--VPPGEAAVRLVKAGASIIGVNCHF 209
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query266
d1lt7a_ 361 Betaine-homocysteine S-methyltransferase {Human (H 100.0
d3bofa2300 Cobalamin-dependent methionine synthase MetH, N-te 100.0
d1muma_289 2-methylisocitrate lyase {Escherichia coli [TaxId: 94.7
d1igwa_416 Isocitrate lyase {Escherichia coli [TaxId: 562]} 94.46
d1s2wa_275 Phosphoenolpyruvate mutase {Blue mussel (Mytilus e 87.7
d3bofa2300 Cobalamin-dependent methionine synthase MetH, N-te 84.66
d1m3ua_262 Ketopantoate hydroxymethyltransferase PanB {Escher 84.6
d1xima_ 392 D-xylose isomerase {Actinoplanes missouriensis [Ta 83.99
d1qopa_267 Trp synthase alpha-subunit {Salmonella typhimurium 83.82
d1gg4a1135 UDP-murNac-tripeptide D-alanyl-D-alanine-adding en 83.8
d2nu7b1150 Succinyl-CoA synthetase, beta-chain, C-terminal do 81.57
d1lt7a_361 Betaine-homocysteine S-methyltransferase {Human (H 81.08
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Betaine-homocysteine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-50  Score=372.95  Aligned_cols=216  Identities=21%  Similarity=0.323  Sum_probs=160.8

Q ss_pred             HHHHHHhcCCeEEeecchhhhHhhhCCCCCCccccccccccCchhHHHHhhhhhhccccEEEechhhhhhhhhhccCC--
Q 024544           12 MTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGF--   89 (266)
Q Consensus        12 l~~~l~~~~~~lllDGg~gT~L~~~g~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~a~~~~l~~~g~--   89 (266)
                      |.+.|++ ++++||||||||+|+++|+...+ .||+.+++++||+|++||++|++||||||+||||++|+.+|.++|.  
T Consensus         3 llerL~~-~~ililDGgmGteL~~rG~~~~~-~Ws~~~~l~~Pe~V~~iH~~yi~AGAdiI~TNTy~a~~~~l~~~g~~~   80 (361)
T d1lt7a_           3 ILERLNA-GEIVIGDGGFVFALEKRGYVKAG-PWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENRGNYV   80 (361)
T ss_dssp             HHHHHHT-TCCEECCTTHHHHHHHHTC--------------CHHHHHHHHHHHHHHTCSEEEEEC---------------
T ss_pred             HHHHhcc-CCEEEEECHHHHHHHHCCCCCCC-CCChHHHhhChHHHHHHHHHHHHhCCCEEEeCCCcCCHHHHHhhchhh
Confidence            5677772 68999999999999999986544 4999999999999999999999999999999999999999988763  


Q ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCccccceEEEEecccccceecCCCccccCCCCchhHHHHHH
Q 024544           90 -STEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKE  168 (266)
Q Consensus        90 -~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~~~~e~~~  168 (266)
                       +.....+++++++++|+++++                    ...++|+||+||+|.+..           ..+.+++++
T Consensus        81 ~~~~~~~~~~~aa~~~a~~~~~--------------------~~~~~VaGsigp~~~~~~-----------~~~~~~~~~  129 (361)
T d1lt7a_          81 LEKISGQEVNEAAADIARQVAD--------------------EGDALVAGGVSQTPSYLS-----------AKSETEVKK  129 (361)
T ss_dssp             --------CHHHHHHHHHHHHH--------------------TTTCEEEEEECCCHHHHT-----------TCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccc--------------------cccceeeccccCCccccc-----------ccchHHHHH
Confidence             222345789999999999874                    236899999999987542           246789999


Q ss_pred             HhhhhhHHhhhcCCCeEEeeccchhhhHHHHHHHHhhcCcccccceeeecCCCceeecCchHHHhhhHHhhhhhhhhccc
Q 024544          169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI  248 (266)
Q Consensus       169 ~~~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~Pv~iSf~~~~~~~l~~G~~~~~a~~~~~~~~~~~avGi  248 (266)
                      +|++|++.|.++|||+|+||||+++.|++++++++++.+  +|||+||++.+++++.+|++.+.++....  .+++++|+
T Consensus       130 ~~~~q~~~l~~~gvD~il~ETm~~~~Ea~~a~~a~~~~~--~Pv~~s~t~~~~g~l~~g~~~e~~~~~~~--~~~~~~g~  205 (361)
T d1lt7a_         130 VFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASG--KPVAATMAIGPEGDLHGVPPGEAAVRLVK--AGASIIGV  205 (361)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCSCHHHHHHHHHHHGGGS--SCEEEEECCBTTBSTTSCCHHHHHHHHHH--TTCSEEEE
T ss_pred             HHHHHHHHHHhhccchhhhHHHhhHHHHHHHHHHHhhcc--ceEEEEEEEcCCCcccCCCcHHHHHHHHh--cccchhhh
Confidence            999999999999999999999999999999999999865  99999999999999999999877765544  46789999


Q ss_pred             ccC-Ccchhhhhheeee
Q 024544          249 NCT-SPRFIHGLILSVR  264 (266)
Q Consensus       249 NC~-~p~~~~~~l~~l~  264 (266)
                      ||+ +|..+.+.++.++
T Consensus       206 nc~~~p~~~~~~i~~l~  222 (361)
T d1lt7a_         206 NCHFDPTISLKTVKLMK  222 (361)
T ss_dssp             ESSSCHHHHHHHHHHHH
T ss_pred             ccccchHhHHHHHHHHH
Confidence            997 6888877776553
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes missouriensis [TaxId: 1866]} Back     information, alignment and structure
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure