Citrus Sinensis ID: 024559

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
MVKLRHSRLQAKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGR
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEcccccEEEEcccccHHHHHHHHHHHcccccccEEEEcccccccccccEEEEcccccccccHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccEEEcccccEEEEEcccccccccccccccc
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcEcccccccccHHHHccEEEEccccccccccccccccEEEEEcccEEEEEcccccHHHHHHHHHHHcHHHHHcEEEccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccccHHcccccccHEEEEHEEHccccccccccccccccccccccccccHHHHHHcccEEccccccEEEEEEccccccccccccccc
mvklrhsrlqakkWSTLTLVLSMLFMLTIVLLMLLAMGIFyipigdddsppndltsFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDlakpymvkstvvdsktgqskdsrvrtssgtflkRGQDRIIRGIEKRiadftfipmehgegiQVLHYEVGQKYDAHYDYFLdefntknggQRMATLLMYLSDveeggetvfpaananfTSVRWWNELsecgkqglsvkpkrgdallfwsmrpdatldpsslhgr
mvklrhsrlqakkwstLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRRAFEkrssiaeekgeqwteivAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTvvdsktgqskdsrvrtssgtflkrgqdriIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSEcgkqglsvkpkRGDALLFWsmrpdatldpsslhgr
MVKLRHSRLQAKKWSTLTLVLSmlfmltivllmllamGIFYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGR
**********AKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYIPIG****************************EQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVV******************FLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWS***************
******************LVLSMLFMLTIVLLMLLAMGIF*******************RAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTV*******SKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLD***LHG*
*********QAKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKS*******************GTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDAT*********
**************STLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPD***********
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVKLRHSRLQAKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query266 2.2.26 [Sep-21-2011]
Q20065539 Prolyl 4-hydroxylase subu yes no 0.639 0.315 0.336 1e-22
P54001534 Prolyl 4-hydroxylase subu yes no 0.616 0.307 0.331 1e-21
Q60715534 Prolyl 4-hydroxylase subu yes no 0.616 0.307 0.320 4e-20
Q5RAG8534 Prolyl 4-hydroxylase subu yes no 0.616 0.307 0.315 2e-19
P13674534 Prolyl 4-hydroxylase subu yes no 0.616 0.307 0.315 2e-19
Q1RMU3534 Prolyl 4-hydroxylase subu yes no 0.616 0.307 0.315 3e-19
P16924516 Prolyl 4-hydroxylase subu yes no 0.616 0.317 0.315 5e-19
Q5ZLK5534 Prolyl 4-hydroxylase subu no no 0.541 0.269 0.344 8e-19
O15460535 Prolyl 4-hydroxylase subu no no 0.548 0.272 0.341 2e-18
Q60716537 Prolyl 4-hydroxylase subu no no 0.548 0.271 0.335 4e-18
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 23/193 (11%)

Query: 77  TEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLK 136
            EI+ ++P A ++ N +  +E E + +LA P + ++TV +SKTG+ + +  R S   +LK
Sbjct: 318 VEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLK 377

Query: 137 RGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDE----FNTKNGG 192
              D +I  + +RI DFT +     E +QV +Y +G  YD H+D+   E    F T N G
Sbjct: 378 GDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTG 437

Query: 193 QRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSM 252
            R+AT+L Y+S  E GG TVF             N L      G +V P + DAL ++++
Sbjct: 438 NRIATVLFYMSQPERGGATVF-------------NHL------GTAVFPSKNDALFWYNL 478

Query: 253 RPDATLDPSSLHG 265
           R D   D  + H 
Sbjct: 479 RRDGEGDLRTRHA 491
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query266
18394842287 2-oxoglutarate (2OG) and Fe(II)-dependen 0.992 0.919 0.781 1e-122
21537370287 putative prolyl 4-hydroxylase, alpha sub 0.992 0.919 0.781 1e-122
297850430287 oxidoreductase [Arabidopsis lyrata subsp 0.992 0.919 0.777 1e-122
224085946288 predicted protein [Populus trichocarpa] 0.996 0.920 0.773 1e-121
255539064289 prolyl 4-hydroxylase alpha subunit, puta 0.996 0.916 0.793 1e-115
356517655290 PREDICTED: prolyl 4-hydroxylase subunit 0.988 0.906 0.741 1e-111
225459748288 PREDICTED: prolyl 4-hydroxylase subunit 0.992 0.916 0.793 1e-109
357483925289 Prolyl 4-hydroxylase alpha-2 subunit [Me 0.992 0.913 0.704 1e-108
363806698289 uncharacterized protein LOC100806046 [Gl 0.988 0.910 0.697 1e-107
225468574288 PREDICTED: prolyl 4-hydroxylase subunit 0.992 0.916 0.721 1e-106
>gi|18394842|ref|NP_564109.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gi|9558598|gb|AAF88161.1|AC026234_12 Contains similarity to a prolyl 4-hydroxylase alpha subunit protein from Gallus gallus gi|212530 [Arabidopsis thaliana] gi|90962978|gb|ABE02413.1| At1g20270 [Arabidopsis thaliana] gi|332191835|gb|AEE29956.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/265 (78%), Positives = 239/265 (90%), Gaps = 1/265 (0%)

Query: 1   MVKLRHSRLQAKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSFRRR 60
           M KLRHSR QA+KWSTL LVL MLFMLTIVLLMLLA G+F +PI +D+S P DL+ FRR 
Sbjct: 1   MAKLRHSRFQARKWSTLMLVLFMLFMLTIVLLMLLAFGVFSLPINNDESSPIDLSYFRRA 60

Query: 61  AFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTG 120
           A E+   + + +G+QWTE+++WEPRAFVYHNFLSK ECEYLI LAKP+MVKSTVVDS+TG
Sbjct: 61  ATERSEGLGK-RGDQWTEVLSWEPRAFVYHNFLSKEECEYLISLAKPHMVKSTVVDSETG 119

Query: 121 QSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYD 180
           +SKDSRVRTSSGTFL+RG+D+II+ IEKRIAD+TFIP +HGEG+QVLHYE GQKY+ HYD
Sbjct: 120 KSKDSRVRTSSGTFLRRGRDKIIKTIEKRIADYTFIPADHGEGLQVLHYEAGQKYEPHYD 179

Query: 181 YFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVK 240
           YF+DEFNTKNGGQRMAT+LMYLSDVEEGGETVFPAAN NF+SV W+NELSECGK+GLSVK
Sbjct: 180 YFVDEFNTKNGGQRMATMLMYLSDVEEGGETVFPAANMNFSSVPWYNELSECGKKGLSVK 239

Query: 241 PKRGDALLFWSMRPDATLDPSSLHG 265
           P+ GDALLFWSMRPDATLDP+SLHG
Sbjct: 240 PRMGDALLFWSMRPDATLDPTSLHG 264

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|21537370|gb|AAM61711.1| putative prolyl 4-hydroxylase, alpha subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297850430|ref|XP_002893096.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297338938|gb|EFH69355.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224085946|ref|XP_002307750.1| predicted protein [Populus trichocarpa] gi|222857199|gb|EEE94746.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255539064|ref|XP_002510597.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223551298|gb|EEF52784.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356517655|ref|XP_003527502.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-2-like [Glycine max] Back     alignment and taxonomy information
>gi|225459748|ref|XP_002285898.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-2 [Vitis vinifera] gi|302141716|emb|CBI18919.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357483925|ref|XP_003612249.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] gi|355513584|gb|AES95207.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|363806698|ref|NP_001242522.1| uncharacterized protein LOC100806046 [Glycine max] gi|255647110|gb|ACU24023.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225468574|ref|XP_002263060.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296084059|emb|CBI24447.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query266
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.992 0.919 0.728 1.4e-105
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 0.992 0.913 0.657 2.4e-92
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.853 0.780 0.698 9.9e-87
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.853 0.782 0.655 2e-81
TAIR|locus:2144960298 AT5G18900 [Arabidopsis thalian 0.699 0.624 0.558 4.9e-53
TAIR|locus:2081106299 P4H2 "prolyl 4-hydroxylase 2" 0.691 0.615 0.542 1.2e-49
TAIR|locus:2088892288 AT3G28490 [Arabidopsis thalian 0.695 0.642 0.524 1.4e-48
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.672 0.632 0.533 1.5e-44
TAIR|locus:2125344272 AT4G35820 [Arabidopsis thalian 0.5 0.488 0.536 1.9e-37
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.691 0.638 0.403 1.2e-35
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
 Identities = 193/265 (72%), Positives = 225/265 (84%)

Query:     1 MVKLRHSRLQAKKWSTLTLVLSXXXXXXXXXXXXXXXGIFYIPIGDDDSPPNDLTSFRRR 60
             M KLRHSR QA+KWSTL LVL                G+F +PI +D+S P DL+ FRR 
Sbjct:     1 MAKLRHSRFQARKWSTLMLVLFMLFMLTIVLLMLLAFGVFSLPINNDESSPIDLSYFRRA 60

Query:    61 AFEKRSSIAEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTG 120
             A E+   + + +G+QWTE+++WEPRAFVYHNFLSK ECEYLI LAKP+MVKSTVVDS+TG
Sbjct:    61 ATERSEGLGK-RGDQWTEVLSWEPRAFVYHNFLSKEECEYLISLAKPHMVKSTVVDSETG 119

Query:   121 QSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYD 180
             +SKDSRVRTSSGTFL+RG+D+II+ IEKRIAD+TFIP +HGEG+QVLHYE GQKY+ HYD
Sbjct:   120 KSKDSRVRTSSGTFLRRGRDKIIKTIEKRIADYTFIPADHGEGLQVLHYEAGQKYEPHYD 179

Query:   181 YFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVK 240
             YF+DEFNTKNGGQRMAT+LMYLSDVEEGGETVFPAAN NF+SV W+NELSECGK+GLSVK
Sbjct:   180 YFVDEFNTKNGGQRMATMLMYLSDVEEGGETVFPAANMNFSSVPWYNELSECGKKGLSVK 239

Query:   241 PKRGDALLFWSMRPDATLDPSSLHG 265
             P+ GDALLFWSMRPDATLDP+SLHG
Sbjct:   240 PRMGDALLFWSMRPDATLDPTSLHG 264
GO:0005506 "iron ion binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005768 "endosome" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125344 AT4G35820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
PLN00052310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 1e-68
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 8e-36
pfam1364093 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase su 9e-04
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  214 bits (545), Expect = 1e-68
 Identities = 101/191 (52%), Positives = 132/191 (69%), Gaps = 11/191 (5%)

Query: 80  VAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQ 139
           V+W+PR FVY  FLS AEC++L+ LAK  + +S V D+K+G+S  S VRTSSG FL + Q
Sbjct: 50  VSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQ 109

Query: 140 DRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLL 199
           D ++  IE+RIA +TF+P E+ E IQ+L YE GQKY+ H+DYF D+ N   GG R AT+L
Sbjct: 110 DPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVL 169

Query: 200 MYLSDVEEGGETVFPAANANFTSVRWWNE-----LSECGKQGLSVKPKRGDALLFWSMRP 254
           MYLS V++GGETVFP A        W N+      SEC  +GL+VKP +GDA+LF+S+  
Sbjct: 170 MYLSTVDKGGETVFPNAEG------WENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHI 223

Query: 255 DATLDPSSLHG 265
           D   DP SLHG
Sbjct: 224 DGVPDPLSLHG 234

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 266
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 99.97
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.86
PHA02813 354 hypothetical protein; Provisional 99.52
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.47
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.2
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.62
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 98.57
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 97.96
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 97.96
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 97.92
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 97.54
PHA02866 333 Hypothetical protein; Provisional 97.19
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 96.99
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 96.86
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 96.54
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 96.33
TIGR02466201 conserved hypothetical protein. This family consis 94.99
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 94.68
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 92.67
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 89.27
KOG3200224 consensus Uncharacterized conserved protein [Funct 87.78
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-53  Score=392.03  Aligned_cols=195  Identities=51%  Similarity=0.862  Sum_probs=178.7

Q ss_pred             ccCCeeEEEeecCCCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCccccceeeccceeecCCchHHHHHHHHHH
Q 024559           71 EKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRI  150 (266)
Q Consensus        71 ~~~~~~vE~ls~~P~i~vi~nfLS~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~Rts~~~~l~~~~d~lv~~I~~Ri  150 (266)
                      .-.+.|+|+|||+|+|++|+||||++||++||+++++.+.++++++..+|+...+++|+|+++|+...+++++++|++||
T Consensus        41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ri  120 (310)
T PLN00052         41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERI  120 (310)
T ss_pred             CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999887777777889999999999987789999999999


Q ss_pred             hhhccCCCCCCCccEEEEcCCCCcccccccccccccccCCCCceEEEEEEeccccCCCcceeccCCCCcccccccccccc
Q 024559          151 ADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELS  230 (266)
Q Consensus       151 ~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~~~~~~l~  230 (266)
                      ++++++|.++.|.+||+||++||+|++|+|++.+..+...+++|++|+|+|||||++||||+||.+.. ....+.++.++
T Consensus       121 a~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~-~~~~~~~~~~s  199 (310)
T PLN00052        121 AAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEG-WENQPKDDTFS  199 (310)
T ss_pred             HHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCccc-ccccccccchh
Confidence            99999999999999999999999999999999764444567899999999999999999999998743 22334567889


Q ss_pred             cccCCCeEEecccceEEEEecCCCCCCCCCCCCCCC
Q 024559          231 ECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGR  266 (266)
Q Consensus       231 ~c~~~~l~V~Pk~G~aLlF~n~~~dG~~D~~slHaG  266 (266)
                      +|.+.+++|+|++|+||||+|+++||++|++|+|+|
T Consensus       200 ~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHag  235 (310)
T PLN00052        200 ECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGS  235 (310)
T ss_pred             hhhcCCeEeccCcceEEEEeccCCCCCCCcccccCC
Confidence            999999999999999999999999999999999997

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 1e-59
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 1e-59
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 2e-59
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 6e-57
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 4e-30
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  226 bits (575), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/197 (54%), Positives = 147/197 (74%), Gaps = 9/197 (4%)
Query: 74  EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
           E+W  E+V  +W PRAF+  NFLS  EC+Y+++ A+P MVKS+VVD+++G+S DS +RTS
Sbjct: 16  EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 75
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT-- 188
           +GT+  +G+D +I  IEKR+A  T IP+E+ EG+QVLHY  GQKY+ HYDYF D  N   
Sbjct: 76  TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 135
Query: 189 KNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALL 248
           ++GGQR+ T+LMYL+ VEEGGETV P A    T   W    SEC K+GL+VKP +GDAL+
Sbjct: 136 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 191
Query: 249 FWSMRPDATLDPSSLHG 265
           F+S++PD + DP+SLHG
Sbjct: 192 FYSLKPDGSNDPASLHG 208
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 4e-87
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 8e-74
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 1e-06
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  257 bits (659), Expect = 4e-87
 Identities = 105/198 (53%), Positives = 145/198 (73%), Gaps = 6/198 (3%)

Query: 70  EEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRT 129
           +E+       ++W PRAF+  NFLS  EC+Y+++ A+P MVKS+VVD+++G+S DS +RT
Sbjct: 6   KEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRT 65

Query: 130 SSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT- 188
           S+GT+  +G+D +I  IEKR+A  T IP+E+ EG+QVLHY  GQKY+ HYDYF D  N  
Sbjct: 66  STGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAG 125

Query: 189 -KNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDAL 247
            ++GGQR+ T+LMYL+ VEEGGETV P A    T   W    SEC K+GL+VKP +GDAL
Sbjct: 126 PEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDAL 181

Query: 248 LFWSMRPDATLDPSSLHG 265
           +F+S++PD + DP+SLHG
Sbjct: 182 MFYSLKPDGSNDPASLHG 199
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Length = 247 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query266
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 99.92
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.81
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 98.12
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.07
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 97.58
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 97.48
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 97.45
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 97.16
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 96.95
3gja_A 319 CYTC3; halogenase, beta barrel, biosynthetic prote 96.46
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 95.69
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 95.17
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 94.95
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 92.33
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=5.4e-48  Score=338.91  Aligned_cols=193  Identities=53%  Similarity=0.949  Sum_probs=175.5

Q ss_pred             cccCCeeEEEeecCCCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCccccceeeccceeecCCchHHHHHHHHH
Q 024559           70 EEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKR  149 (266)
Q Consensus        70 ~~~~~~~vE~ls~~P~i~vi~nfLS~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~Rts~~~~l~~~~d~lv~~I~~R  149 (266)
                      .++.+.|+|+||++|+|++++||||++||++||+++++.+.++++++..+|....+.+|+|+.+|++...++++++|++|
T Consensus         6 ~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~r   85 (224)
T 2jig_A            6 KEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKR   85 (224)
T ss_dssp             -CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHHH
T ss_pred             ccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999998777777788999999999998678999999999


Q ss_pred             HhhhccCCCCCCCccEEEEcCCCCccccccccccccccc--CCCCceEEEEEEeccccCCCcceeccCCCCccccccccc
Q 024559          150 IADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT--KNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWN  227 (266)
Q Consensus       150 i~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~--~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~s~~~~~~  227 (266)
                      |.+++++|...+|++||+||++||+|++|+|++....+.  ..+++|++|+++||||+++||||+||....    .+.|+
T Consensus        86 i~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~----~~~~~  161 (224)
T 2jig_A           86 VAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQ----KVTGD  161 (224)
T ss_dssp             HHHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSSS----CCCST
T ss_pred             HHHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCccc----ccccc
Confidence            999999999999999999999999999999998753221  346799999999999999999999998752    35678


Q ss_pred             ccccccCCCeEEecccceEEEEecCCCCCCCCCCCCCCC
Q 024559          228 ELSECGKQGLSVKPKRGDALLFWSMRPDATLDPSSLHGR  266 (266)
Q Consensus       228 ~l~~c~~~~l~V~Pk~G~aLlF~n~~~dG~~D~~slHaG  266 (266)
                      .+++|.+.+++|+|++|+||||+|+++||++|++++|+|
T Consensus       162 ~~~~c~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~  200 (224)
T 2jig_A          162 GWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGS  200 (224)
T ss_dssp             TSCTTGGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEE
T ss_pred             cccccccCceEEecccCcEEEEEeeCCCCCCCCCCcccC
Confidence            899999889999999999999999999999999999986
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query266
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 97.74
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 97.45
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 94.54
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 93.97
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Phytanoyl-CoA dioxygenase, PhyH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.00016  Score=61.45  Aligned_cols=77  Identities=13%  Similarity=0.231  Sum_probs=41.4

Q ss_pred             ccccccccccccccCCCCceEEEEEEeccccC-CCcceec-cCCCCcc---cccccc--------cccccc--cCCCeEE
Q 024559          175 YDAHYDYFLDEFNTKNGGQRMATLLMYLSDVE-EGGETVF-PAANANF---TSVRWW--------NELSEC--GKQGLSV  239 (266)
Q Consensus       175 y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~-eGGeT~F-p~~~~~~---s~~~~~--------~~l~~c--~~~~l~V  239 (266)
                      ..||.|.....   .......+|+.+||.|+. +.|.+.| |......   ...+.+        ....+-  ....+.+
T Consensus       130 ~~wHqD~~~~~---~~~~~~~~~~wi~L~d~~~~nG~l~vipGSHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  206 (296)
T d2a1xa1         130 HPLHQDLHYFP---FRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHL  206 (296)
T ss_dssp             -CCBCGGGGCC---EECGGGEEEEEEESSCBCTTBTCEEECTTGGGSCCCCCCC-----------CCCCC-CCCSCCEEE
T ss_pred             CCcccCccccc---cCCccccceeeEeeeeccccccccceecccccccccccccccccCCcccccccccchhhccceEEe
Confidence            46899975421   123457899999999985 5577766 5431100   000000        000000  1234567


Q ss_pred             ecccceEEEEecCCC
Q 024559          240 KPKRGDALLFWSMRP  254 (266)
Q Consensus       240 ~Pk~G~aLlF~n~~~  254 (266)
                      .-++|++|+|.....
T Consensus       207 ~~k~Gdvli~~~~l~  221 (296)
T d2a1xa1         207 VMEKGDTVFFHPLLI  221 (296)
T ss_dssp             CBCTTCEEEECTTCC
T ss_pred             eecCCcEEEECCCee
Confidence            789999999954433
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure