Citrus Sinensis ID: 024582

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
MEEQSKWIRESLTSFPQPPNRTNHNAFYGPIDDLFSAVKEKKVLLEEESSIGSLDLGASSCTSNEDAHRWKFYEEDIATLRGKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEYIRNSRININIRQVF
cHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccccccccccccccccEEccccEEEEEccccEEEccccccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccccccccccccccccEEEEcccccEEEEEcccccccccEEEEcccccEEEEcccHHHccccccccccccccHHHHHcccccccccHHHHHHHcccccEEEEEEccc
cHHHHHHHHHHHHcccccccccccccEEccHHHHHHHHHHccEEEEEcccccHHccccccccccccHHHHHHHHHcHHcccccccccEEEEccccccccEEcccccEccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEccccccEccccccccHHccccEEEEEccccEEEEEccccccccccEEEEccccEEEEccHHHHHHcccccccccccccccccccccccHcHHHHHHHHcccccEEEEEEEcc
MEEQSKWIRESltsfpqppnrtnhnafygpiDDLFSAVKEKKVLLEEEssigsldlgassctsnedahrWKFYEEDIATLRGKTCKSVKASVLLRKLRWCtlglqfdwskrnynvslphkkipDALCQLARRLaapampigeefqpeaAIVNYFGlgdtlgghlddmeadwskpivsmslGCKAIFLlggksredpplamfLRSGDAVLMAGearecfhgvpriftdrenaeiasldlqfsheddHFFLEYIRNSRININIRQVF
MEEQSKWIRESltsfpqppnrtnhNAFYGPIDDLFSAVKEKKVLLEEessigsldlgassctsnEDAHRWKFYEEDIATLRGKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEYIrnsrininirqvf
MEEQSKWIRESLTSFPQPPNRTNHNAFYGPIDDLFSAvkekkvlleeeSSIGSLDLGASSCTSNEDAHRWKFYEEDIATLRGKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFglgdtlgghlddMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEYirnsrininirQVF
*************************AFYGPIDDLFSAVKEKKVLL*******************EDAHRWKFYEEDIATLRGKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEYIRNSRININIR***
*EEQSKWIRESLTSFPQPPNRTNHNAFYGPIDDLFSAVKEKKVLLE**SSIGSLDLGASSCTSNEDAHRWKFYEED***************VLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEYIRNSRININIRQVF
MEEQSKWIRESLTSFPQPPNRTNHNAFYGPIDDLFSAVKEKKVLLEEESSIGSLDLGASSCTSNEDAHRWKFYEEDIATLRGKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEYIRNSRININIRQVF
MEEQSKWIRESLTSFPQPPNRTNHNAFYGPIDDLFSAVKEKKVLLEEESSIGSLDLGASSCTSNEDAHRWKFYEEDIATLRGKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEYIRNSRININIRQVF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEEQSKWIRESLTSFPQPPNRTNHNAFYGPIDDLFSAVKEKKVLLEEESSIGSLDLGASSCTSNEDAHRWKFYEEDIATLRGKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEYIRNSRININIRQVF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query265 2.2.26 [Sep-21-2011]
Q9SA98345 Alpha-ketoglutarate-depen yes no 0.939 0.721 0.725 1e-111
Q54N08393 Alpha-ketoglutarate-depen yes no 0.883 0.595 0.366 1e-38
P0CB42389 Alkylated DNA repair prot yes no 0.826 0.562 0.338 7e-28
Q13686389 Alkylated DNA repair prot yes no 0.720 0.491 0.350 8e-28
O60066302 Alpha-ketoglutarate-depen yes no 0.683 0.599 0.326 4e-25
P05050216 Alpha-ketoglutarate-depen N/A no 0.464 0.569 0.36 2e-13
P0CAT7220 Alpha-ketoglutarate-depen yes no 0.490 0.590 0.352 6e-13
B8GWW6220 Alpha-ketoglutarate-depen yes no 0.490 0.590 0.352 6e-13
P37462216 Alpha-ketoglutarate-depen yes no 0.464 0.569 0.344 7e-12
>sp|Q9SA98|ALKBH_ARATH Alpha-ketoglutarate-dependent dioxygenase alkB OS=Arabidopsis thaliana GN=At1g11780 PE=2 SV=2 Back     alignment and function desciption
 Score =  399 bits (1026), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/266 (72%), Positives = 217/266 (81%), Gaps = 17/266 (6%)

Query: 1   MEEQSKWIRESLTSFPQPPNRTNHNAFYGPIDDLFSAVKEKKVLLEEESSIGSLDLGASS 60
           ++EQ KWI+ESLTSFPQPPNRTNHNA YGPIDDLF + KE KVL++++            
Sbjct: 96  LKEQCKWIKESLTSFPQPPNRTNHNAIYGPIDDLFDSAKENKVLVQDD------------ 143

Query: 61  CTSNEDAHRWKFYEE-DIATLRGKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYNVSLPH 119
            T+N    +WKFYEE DI      +CKSV ASVLLRKLRW TLGLQFDWSKRNY+VSLPH
Sbjct: 144 LTNN----KWKFYEEVDIEKATRSSCKSVSASVLLRKLRWSTLGLQFDWSKRNYDVSLPH 199

Query: 120 KKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMS 179
             IPDALCQLA+  AA AMP GEEF+PE AIVNYFG+GDTLGGHLDDMEADWSKPIVSMS
Sbjct: 200 NNIPDALCQLAKTHAAIAMPDGEEFRPEGAIVNYFGIGDTLGGHLDDMEADWSKPIVSMS 259

Query: 180 LGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQ 239
           LGCKAIFLLGGKS++DPP AM+LRSGD VLMAGEARECFHG+PRIFT  ENA+I +L+ +
Sbjct: 260 LGCKAIFLLGGKSKDDPPHAMYLRSGDVVLMAGEARECFHGIPRIFTGEENADIGALESE 319

Query: 240 FSHEDDHFFLEYIRNSRININIRQVF 265
            SHE  HFF EYI+ SRININIRQVF
Sbjct: 320 LSHESGHFFAEYIKTSRININIRQVF 345
Putative dioxygenase that may repair alkylated DNA or RNA by oxidative demethylation. Requires molecular oxygen, alpha-ketoglutarate and iron.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q54N08|ALKB_DICDI Alpha-ketoglutarate-dependent dioxygenase alkB OS=Dictyostelium discoideum GN=alkB PE=2 SV=1 Back     alignment and function description
>sp|P0CB42|ALKB1_MOUSE Alkylated DNA repair protein alkB homolog 1 OS=Mus musculus GN=Alkbh1 PE=1 SV=1 Back     alignment and function description
>sp|Q13686|ALKB1_HUMAN Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2 Back     alignment and function description
>sp|O60066|ALKBH_SCHPO Alpha-ketoglutarate-dependent dioxygenase abh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=abh1 PE=2 SV=3 Back     alignment and function description
>sp|P05050|ALKB_ECOLI Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Escherichia coli (strain K12) GN=alkB PE=1 SV=1 Back     alignment and function description
>sp|P0CAT7|ALKB_CAUCR Alpha-ketoglutarate-dependent dioxygenase AlkB homolog OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=alkB PE=3 SV=1 Back     alignment and function description
>sp|B8GWW6|ALKB_CAUCN Alpha-ketoglutarate-dependent dioxygenase AlkB homolog OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=alkB PE=3 SV=2 Back     alignment and function description
>sp|P37462|ALKB_SALTY Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=alkB PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
147833916 366 hypothetical protein VITISV_011566 [Viti 1.0 0.724 0.796 1e-123
225425416360 PREDICTED: alpha-ketoglutarate-dependent 1.0 0.736 0.796 1e-122
224075559353 predicted protein [Populus trichocarpa] 0.943 0.708 0.766 1e-114
297849550345 oxidoreductase [Arabidopsis lyrata subsp 0.939 0.721 0.733 1e-110
449435087363 PREDICTED: alpha-ketoglutarate-dependent 1.0 0.730 0.726 1e-109
15221095345 alpha-ketoglutarate-dependent dioxygenas 0.939 0.721 0.725 1e-109
356540136358 PREDICTED: alpha-ketoglutarate-dependent 0.984 0.729 0.724 1e-107
356566058358 PREDICTED: alpha-ketoglutarate-dependent 0.984 0.729 0.720 1e-107
343172810354 alpha-ketoglutarate-dependent dioxygenas 0.981 0.734 0.710 1e-107
4835778354 F25C20.6 [Arabidopsis thaliana] 0.939 0.703 0.701 1e-106
>gi|147833916|emb|CAN72697.1| hypothetical protein VITISV_011566 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/265 (79%), Positives = 231/265 (87%)

Query: 1   MEEQSKWIRESLTSFPQPPNRTNHNAFYGPIDDLFSAVKEKKVLLEEESSIGSLDLGASS 60
           +EEQ +WIRESL SFPQP NRTNHNA YGPI DLF A KE+K+L+EEE S G LD  ++S
Sbjct: 102 VEEQGRWIRESLISFPQPYNRTNHNAIYGPIRDLFMAAKERKILVEEEDSSGGLDSLSNS 161

Query: 61  CTSNEDAHRWKFYEEDIATLRGKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYNVSLPHK 120
             +N DA RWKFYEE+  + RG TCKS+ ASVLLRKLRW TLGLQFDWSKRNYNVSLPH 
Sbjct: 162 SITNMDAERWKFYEENTVSSRGSTCKSISASVLLRKLRWSTLGLQFDWSKRNYNVSLPHN 221

Query: 121 KIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSL 180
           KIPDALC LA+ +AAPAM  G+ FQPEAAIVNYFGLGD LGGHLDDMEADW+KPIVSMSL
Sbjct: 222 KIPDALCDLAKEMAAPAMSKGKVFQPEAAIVNYFGLGDMLGGHLDDMEADWTKPIVSMSL 281

Query: 181 GCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQF 240
           GCKAIFLLGGKSR+DPPLAMF+RSGD VLMAGEARECFHGVPRIFTD+ENAEIA L+L F
Sbjct: 282 GCKAIFLLGGKSRDDPPLAMFVRSGDVVLMAGEARECFHGVPRIFTDQENAEIAPLELMF 341

Query: 241 SHEDDHFFLEYIRNSRININIRQVF 265
           SHEDD  FLEYIR+SRININIRQVF
Sbjct: 342 SHEDDVCFLEYIRSSRININIRQVF 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225425416|ref|XP_002277768.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB [Vitis vinifera] gi|297738457|emb|CBI27658.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224075559|ref|XP_002304683.1| predicted protein [Populus trichocarpa] gi|222842115|gb|EEE79662.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297849550|ref|XP_002892656.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297338498|gb|EFH68915.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449435087|ref|XP_004135327.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB-like [Cucumis sativus] gi|449529170|ref|XP_004171574.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15221095|ref|NP_172643.1| alpha-ketoglutarate-dependent dioxygenase alkB [Arabidopsis thaliana] gi|209572586|sp|Q9SA98.2|ALKBH_ARATH RecName: Full=Alpha-ketoglutarate-dependent dioxygenase alkB; AltName: Full=Alkylated DNA repair protein alkB homolog gi|124301166|gb|ABN04835.1| At1g11780 [Arabidopsis thaliana] gi|332190663|gb|AEE28784.1| alpha-ketoglutarate-dependent dioxygenase alkB [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356540136|ref|XP_003538546.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB-like [Glycine max] Back     alignment and taxonomy information
>gi|356566058|ref|XP_003551252.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB-like [Glycine max] Back     alignment and taxonomy information
>gi|343172810|gb|AEL99108.1| alpha-ketoglutarate-dependent dioxygenase alkB, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|4835778|gb|AAD30244.1|AC007296_5 F25C20.6 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
TAIR|locus:2027347345 AT1G11780 [Arabidopsis thalian 0.939 0.721 0.639 1.5e-83
DICTYBASE|DDB_G0285575393 alkB "alkylated DNA repair pro 0.550 0.371 0.376 1e-29
UNIPROTKB|Q5F3E4371 ALKBH1 "Uncharacterized protei 0.577 0.412 0.371 5.1e-26
ZFIN|ZDB-GENE-050522-196367 alkbh1 "alkB, alkylation repai 0.558 0.403 0.366 8.2e-26
UNIPROTKB|Q13686389 ALKBH1 "Alkylated DNA repair p 0.577 0.393 0.367 3.2e-24
MGI|MGI:2384034389 Alkbh1 "alkB, alkylation repai 0.596 0.406 0.361 3.7e-24
FB|FBgn0065035332 AlkB "AlkB" [Drosophila melano 0.509 0.406 0.376 6.2e-24
UNIPROTKB|E2RSQ8389 ALKBH1 "Uncharacterized protei 0.562 0.383 0.375 7.9e-24
RGD|1308327389 Alkbh1 "alkB, alkylation repai 0.596 0.406 0.355 4.9e-23
POMBASE|SPBC13G1.04c302 abh1 "alkB homolog/2-OG-Fe(II) 0.581 0.509 0.320 4.1e-21
TAIR|locus:2027347 AT1G11780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 170/266 (63%), Positives = 188/266 (70%)

Query:     1 MEEQSKWIRESLTSFPQPPNRTNHNAFYGPIDDLFSAXXXXXXXXXXXSSIGSLDLGASS 60
             ++EQ KWI+ESLTSFPQPPNRTNHNA YGPIDDLF +                 DL    
Sbjct:    96 LKEQCKWIKESLTSFPQPPNRTNHNAIYGPIDDLFDSAKENKVLVQD-------DL---- 144

Query:    61 CTSNEDAHRWKFYEE-DIATLRGKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYNVSLPH 119
              T+N    +WKFYEE DI      +CKSV ASVLLRKLRW TLGLQFDWSKRNY+VSLPH
Sbjct:   145 -TNN----KWKFYEEVDIEKATRSSCKSVSASVLLRKLRWSTLGLQFDWSKRNYDVSLPH 199

Query:   120 KKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFXXXXXXXXXXXXMEADWSKPIVSMS 179
               IPDALCQLA+  AA AMP GEEF+PE AIVNYF            MEADWSKPIVSMS
Sbjct:   200 NNIPDALCQLAKTHAAIAMPDGEEFRPEGAIVNYFGIGDTLGGHLDDMEADWSKPIVSMS 259

Query:   180 LGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQ 239
             LGCKAIFLLGGKS++DPP AM+LRSGD VLMAGEARECFHG+PRIFT  ENA+I +L+ +
Sbjct:   260 LGCKAIFLLGGKSKDDPPHAMYLRSGDVVLMAGEARECFHGIPRIFTGEENADIGALESE 319

Query:   240 FSHEDDHFFLEYXXXXXXXXXXXQVF 265
              SHE  HFF EY           QVF
Sbjct:   320 LSHESGHFFAEYIKTSRININIRQVF 345
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
DICTYBASE|DDB_G0285575 alkB "alkylated DNA repair protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3E4 ALKBH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-196 alkbh1 "alkB, alkylation repair homolog 1 (E. coli)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q13686 ALKBH1 "Alkylated DNA repair protein alkB homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2384034 Alkbh1 "alkB, alkylation repair homolog 1 (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0065035 AlkB "AlkB" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSQ8 ALKBH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1308327 Alkbh1 "alkB, alkylation repair homolog 1 (E. coli)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
POMBASE|SPBC13G1.04c abh1 "alkB homolog/2-OG-Fe(II) oxygenase family Abh1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SA98ALKBH_ARATH1, ., 1, 4, ., 1, 1, ., -0.72550.93960.7217yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.691
4th Layer1.14.11.7LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
pfam13532190 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su 2e-46
TIGR00568169 TIGR00568, alkb, DNA alkylation damage repair prot 2e-38
PRK15401213 PRK15401, PRK15401, alpha-ketoglutarate-dependent 1e-22
COG3145194 COG3145, AlkB, Alkylated DNA repair protein [DNA r 2e-20
>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information 
 Score =  153 bits (388), Expect = 2e-46
 Identities = 64/185 (34%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 78  ATLRGKTCKSVKASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPA 137
            T  GK             L W T G  + +S        P    P  L QLA RLAA A
Sbjct: 31  MTPGGKPMSV--RMTNCGPLGWVTDGPGYRYSGTPVT-GEPWPPFPAVLLQLAERLAAAA 87

Query: 138 MPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPP 197
            P    F+P A +VN++  G  +G H D  E D+  PIVS+SLG  A+F  GGK+R+DP 
Sbjct: 88  GP--PGFEPNACLVNFYRPGARMGLHQDKDELDFGAPIVSVSLGDPALFRFGGKTRDDPT 145

Query: 198 LAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEYIRNSRI 257
           +A+ L SGD ++M G +R  +HGVPRI                           +   RI
Sbjct: 146 IALPLESGDVLVMGGPSRLAYHGVPRIKPG--------------------THPLLGGGRI 185

Query: 258 NINIR 262
           N+  R
Sbjct: 186 NLTFR 190

Length = 190
>gnl|CDD|129659 TIGR00568, alkb, DNA alkylation damage repair protein AlkB Back     alignment and domain information
>gnl|CDD|237957 PRK15401, PRK15401, alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 265
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 100.0
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 100.0
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 100.0
KOG2731378 consensus DNA alkylation damage repair protein [RN 100.0
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 99.96
KOG4176323 consensus Uncharacterized conserved protein [Funct 99.64
KOG3200224 consensus Uncharacterized conserved protein [Funct 99.64
KOG3959306 consensus 2-Oxoglutarate- and iron-dependent dioxy 97.64
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 97.15
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 97.02
KOG2731378 consensus DNA alkylation damage repair protein [RN 96.99
PF12933253 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 96.11
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 93.82
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 90.92
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 85.6
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 84.44
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information 
Probab=100.00  E-value=1.5e-42  Score=297.72  Aligned_cols=130  Identities=43%  Similarity=0.680  Sum_probs=120.0

Q ss_pred             hhhhhhceeeeeecceeecCCCcccCCCCCCCchHHHHHHHHHHhhccCCCCCCCCCCeEEeeecCCCCCCCcccCCCCc
Q 024582           90 ASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEA  169 (265)
Q Consensus        90 ~~~ll~klRW~tlG~~ydw~~~~y~~~~~~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~ivN~Y~~gd~lg~H~D~~e~  169 (265)
                      ++.+++||||++.|++|+|+++.|....++++||++|.+|+++++..+  ++.++.||+||||||++||+||||+|++|.
T Consensus        40 pr~~~~~l~W~~~g~~Y~ys~~~~~~~~~~p~~P~~L~~L~~~v~~~~--g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~  117 (169)
T TIGR00568        40 AMTNLGKLGWTTHGQGYLYSPKDPQTNKPWPAMPQDLGDLCERVATAA--GFPDFQPDACLVNRYAPGATLSLHQDRDEP  117 (169)
T ss_pred             hhhhcccceEEcCCCcccCCCcccCCCCCCCCCCHHHHHHHHHHHHHh--CCCCCCCCEEEEEeecCCCccccccccccc
Confidence            366778999999999999999999766677789999999999998766  456789999999999999999999998888


Q ss_pred             CCCCCeEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCC
Q 024582          170 DWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGV  221 (265)
Q Consensus       170 ~~~~PIvSlSLG~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~sR~~~HgV  221 (265)
                      +++.||||||||++|+|+|+++++++.+.+|.|+|||||||+|++|++||||
T Consensus       118 ~~~~pI~SvSLG~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~sR~~~Hgv  169 (169)
T TIGR00568       118 DLRAPLLSVSLGLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGESRLAFHGV  169 (169)
T ss_pred             cCCCCEEEEeCCCCEEEEecCCcCCCceEEEEeCCCCEEEECCchhccccCC
Confidence            8889999999999999999998888889999999999999999999999998

Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification] Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4176 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification] Back     alignment and domain information
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
3khc_A219 Crystal Structure Of Escherichia Coli Alkb In Compl 4e-12
3bkz_A201 X-Ray Structure Of E Coli Alkb Crosslinked To Dsdna 6e-12
2fd8_A211 Crystal Structure Of Alkb In Complex With Fe(Ii), 2 7e-12
3khb_A219 Crystal Structure Of Escherichia Coli Alkb With Co( 7e-12
3t3y_A206 Crystal Structure Of Alkb In Complex With Fe(Iii) A 7e-12
3bi3_A201 X-Ray Structure Of Alkb Protein Bound To Dsdna Cont 1e-11
3o1m_A206 Iron-Catalyzed Oxidation Intermediates Captured In 1e-11
3bie_A202 X-Ray Structure Of E Coli Alkb Bound To Dsdna Conta 1e-11
>pdb|3KHC|A Chain A, Crystal Structure Of Escherichia Coli Alkb In Complex With Ssdna Containing A 1-Methylguanine Lesion Length = 219 Back     alignment and structure 
Iteration: 1

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 97  LRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFXX 156
           L W T    + +S  +   + P   +P +   L +R A  A     +FQP+A ++N +  
Sbjct: 70  LGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDACLINRYAP 127
Query: 157 XXXXXXXXXXMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARE 216
                      E D   PIVS+SLG  AIF  GG  R DP   + L  GD V+  GE+R 
Sbjct: 128 GAKLSLHQDKAEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRL 187
Query: 217 CFHGV 221
            +HG+
Sbjct: 188 FYHGI 192
>pdb|3BKZ|A Chain A, X-Ray Structure Of E Coli Alkb Crosslinked To Dsdna In The Active Site Length = 201 Back     alignment and structure
>pdb|2FD8|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Ii), 2-Oxoglutarate, And Methylated Trinucleotide T-Mea-T Length = 211 Back     alignment and structure
>pdb|3KHB|A Chain A, Crystal Structure Of Escherichia Coli Alkb With Co(Ii) And 2-Og Length = 219 Back     alignment and structure
>pdb|3T3Y|A Chain A, Crystal Structure Of Alkb In Complex With Fe(Iii) And 2-(3- Hydroxypicolinomido)acetic Acid Length = 206 Back     alignment and structure
>pdb|3BI3|A Chain A, X-Ray Structure Of Alkb Protein Bound To Dsdna Containing 1meaA WITH Cofactors Length = 201 Back     alignment and structure
>pdb|3O1M|A Chain A, Iron-Catalyzed Oxidation Intermediates Captured In A Dna Repair Dioxygenase Length = 206 Back     alignment and structure
>pdb|3BIE|A Chain A, X-Ray Structure Of E Coli Alkb Bound To Dsdna Containing 1meaT WITH Mn And 2kg Length = 202 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 2e-45
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 2e-24
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 6e-08
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 2e-06
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211 Back     alignment and structure
 Score =  150 bits (381), Expect = 2e-45
 Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 22/175 (12%)

Query: 90  ASVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAA 149
           A      L W T    + +S  +   + P   +P +   L +R A  A     +FQP+A 
Sbjct: 50  AMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDAC 107

Query: 150 IVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVL 209
           ++N +  G  L  H D  E D   PIVS+SLG  AIF  GG  R DP   + L  GD V+
Sbjct: 108 LINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVV 167

Query: 210 MAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEYIRNSRININIRQV 264
             GE+R  +HG+  +                             + R N+  RQ 
Sbjct: 168 WGGESRLFYHGIQPLKAGFH--------------------PLTIDCRYNLTFRQA 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Length = 204 Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 100.0
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 99.97
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 99.97
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 99.97
3lfm_A 495 Protein FTO; FAT MASS and obesity associated (FTO) 95.82
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 91.22
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 84.74
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 84.71
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
Probab=100.00  E-value=1.3e-36  Score=267.97  Aligned_cols=157  Identities=31%  Similarity=0.501  Sum_probs=134.1

Q ss_pred             cccchh-hhhhceeeeeecceeecCCCcccCCCCCCCchHHHHHHHHHHhhccCCCCCCCCCCeEEeeecCCCCCCCccc
Q 024582           86 KSVKAS-VLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHL  164 (265)
Q Consensus        86 ~~~~~~-~ll~klRW~tlG~~ydw~~~~y~~~~~~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~ivN~Y~~gd~lg~H~  164 (265)
                      +.++++ ....+|.|++-+..|.|++..+....+|++||++|.+|+++++..+  ++..|.||+||||+|++|++|+||+
T Consensus        45 ~~~s~~~~~~g~~~W~~d~~~Y~Ys~~~~~~~~pw~~~P~~L~~l~~~~~~~~--g~~~~~pn~~LvN~Y~~G~~i~~H~  122 (211)
T 3i3q_A           45 YTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAA--GYPDFQPDACLINRYAPGAKLSLHQ  122 (211)
T ss_dssp             CBCSSEEEEESSBEEEEETTEEEEESBCTTTSSBCCCCCHHHHHHHHHHHHHT--TCTTCCCCEEEEEEECTTCCEEEEC
T ss_pred             CcCchhhcccccceeecCCCCcCcCCCccCCCCCCCchHHHHHHHHHHHHHhc--CCCCcCCCEEEEEEEcCCCCccccc
Confidence            344553 3456899999888899998885555689999999999999998765  4467899999999999999999999


Q ss_pred             CCCCcCCCCCeEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCCCccccCCchhhhhhhhcccCCCc
Q 024582          165 DDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHED  244 (265)
Q Consensus       165 D~~e~~~~~PIvSlSLG~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~sR~~~HgVPki~~~~~~~~~~~~~~~~~~~~  244 (265)
                      |..|.+++.||+|||||++|+|.|+++++.+...++.|++||+|||+|++|+|+||||+++.++.+.             
T Consensus       123 D~~e~~~~~pI~svSLG~~~~f~f~~~~~~~~~~~i~L~~GsllvM~G~~r~~~H~I~~~~~~~~p~-------------  189 (211)
T 3i3q_A          123 DKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPL-------------  189 (211)
T ss_dssp             CCCCSCTTSCEEEEEEESCEEEEECCSSTTSCCEEEEECTTCEEEECGGGTTCCEEECCCCCCCBTT-------------
T ss_pred             CCCccccCCCEEEEECCCCeEEEEecccCCCceEEEECCCCCEEEECchHHceEeccCcccCCcCCC-------------
Confidence            9655456789999999999999999987777889999999999999999999889999998875431             


Q ss_pred             hhhhhhccCCceeEEEeecc
Q 024582          245 DHFFLEYIRNSRININIRQV  264 (265)
Q Consensus       245 ~~~~~~y~~~~RINiTfRqV  264 (265)
                             +++.|||||||++
T Consensus       190 -------~~~~RIsLTFR~~  202 (211)
T 3i3q_A          190 -------TIDCRYNLTFRQA  202 (211)
T ss_dssp             -------TBTCEEEEEEECC
T ss_pred             -------CCCCEEEEEeeec
Confidence                   3689999999987
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 265
d2fdia1200 b.82.2.10 (A:15-214) Alkylated DNA repair protein 2e-29
d2iuwa1210 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s 5e-09
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

 Score =  108 bits (270), Expect = 2e-29
 Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 22/171 (12%)

Query: 94  LRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNY 153
              L W T    + +S  +   + P   +P +   L +R A  A     +FQP+A ++N 
Sbjct: 50  CGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAG--YPDFQPDACLINR 107

Query: 154 FGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGE 213
           +  G  L  H D  E D   PIVS+SLG  AIF  GG  R DP   + L  GD V+  GE
Sbjct: 108 YAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGE 167

Query: 214 ARECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEYIRNSRININIRQV 264
           +R  +HG+  +                             + R N+  RQ 
Sbjct: 168 SRLFYHGIQPLKAGFH--------------------PLTIDCRYNLTFRQA 198
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 99.95
d1vrba1319 Putative asparaginyl hydroxylase YxbC {Bacillus su 80.85
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-37  Score=270.00  Aligned_cols=148  Identities=33%  Similarity=0.539  Sum_probs=131.0

Q ss_pred             hceeeeeecceeecCCCcccCCCCCCCchHHHHHHHHHHhhccCCCCCCCCCCeEEeeecCCCCCCCcccCCCCcCCCCC
Q 024582           95 RKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLARRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKP  174 (265)
Q Consensus        95 ~klRW~tlG~~ydw~~~~y~~~~~~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~ivN~Y~~gd~lg~H~D~~e~~~~~P  174 (265)
                      .++.|.+-.+.|.|++..+....+++++|++|.+|+++++..+  ++.++.||+||||||++|+.|++|.|+.|.+++.|
T Consensus        51 g~~gW~~d~~~Yry~~~~~~~~~~wp~iP~~l~~L~~~~~~~~--~~~~~~pn~~LvN~Y~~G~~~~~h~dddE~~~~~p  128 (200)
T d2fdia1          51 GHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAA--GYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAP  128 (200)
T ss_dssp             SSBEEEEETTEEEEESBCTTTSSBCCCCCHHHHHHHHHHHHHH--TCTTCCCSEEEEEEECTTCCEEEECCCCSSCTTSC
T ss_pred             cccccccCCcCcccccccCCCCCCCCCccHHHHHHHHHHHHHc--CCCccCCCeeEEEEecCCCCccccccCCccccCCC
Confidence            3677888777788888777666789999999999999998876  56788999999999999999999999888778899


Q ss_pred             eEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCCCccccCCchhhhhhhhcccCCCchhhhhhccCC
Q 024582          175 IVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDHFFLEYIRN  254 (265)
Q Consensus       175 IvSlSLG~~~iF~~~~~~~~~~~~~i~L~sGdllvM~G~sR~~~HgVPki~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~  254 (265)
                      |+|||||++|+|.|+++++.+....+.|++||||||+|++|+||||||++++++.+                    .+.+
T Consensus       129 IvslSLG~~~~f~f~~~~~~~~~~~~~L~~Gdllvm~G~~r~~~H~V~~~~~~~~~--------------------~~~~  188 (200)
T d2fdia1         129 IVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHP--------------------LTID  188 (200)
T ss_dssp             EEEEEEESCEEEEECCSSTTSCCEEEEECTTCEEEECGGGGGCCEEECCCCCCCBT--------------------TTBT
T ss_pred             ceEEEEeCCeeEEecccccCCceEEEEcCCCCEEEeCcchhheEecCCcccCCCCC--------------------CCCC
Confidence            99999999999999998888889999999999999999999999999999987543                    1368


Q ss_pred             ceeEEEeecc
Q 024582          255 SRININIRQV  264 (265)
Q Consensus       255 ~RINiTfRqV  264 (265)
                      .|||||||++
T Consensus       189 ~RislTfR~~  198 (200)
T d2fdia1         189 CRYNLTFRQA  198 (200)
T ss_dssp             CEEEEEEECC
T ss_pred             CeEEEEEEec
Confidence            9999999985
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure