Citrus Sinensis ID: 024618

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHc
Coil and Loop (DISEMBL)
mnpyvghpnplkeGQELFRKGLLSEAVLALEAEVLknpensegwRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLrhhpkygtiappelsdslyYADVARLFVEAArmspedadVHIVLGVLYNLSRQYDKAIESFQTALklkpqdysLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAmnpkadnaWQYLRISLRYagrypnrgdif
Flexible Loop (DISEMBL)
mnpyvghpnplkEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLryagrypnrgdif
Low Complexity Region (SEG)
MNPYVGHPNPLKEGQELFRKGllseavlaleaevlKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF
Disordered region (IsUnstruct)
*****************FRKGLLSEAVLALEAEVLKN***SEGWRLLGIAHA********************TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY*******
Disordered Region (DISOPRED)
MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF
Disordered Region (DISEMBL)
MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF
Disordered Region (DISPRO)
MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q9FMA3	728	Peroxisome biogenesis pro	yes	no	0.969	0.353	0.859	1e-131
Q54MD1	641	Peroxisomal targeting sig	yes	no	0.935	0.386	0.438	1e-54
P50542	639	Peroxisomal targeting sig	yes	no	0.962	0.399	0.406	3e-52
Q2M2R8	640	Peroxisomal targeting sig	yes	no	0.962	0.398	0.413	6e-52
Q1RMV0	640	Peroxisomal targeting sig	yes	no	0.962	0.398	0.409	9e-52
O09012	639	Peroxisomal targeting sig	no	no	0.962	0.399	0.412	1e-51
O70525	640	Peroxisomal targeting sig	yes	no	0.962	0.398	0.406	2e-51
Q5ZMQ9	645	Peroxisomal targeting sig	yes	no	0.962	0.395	0.404	5e-51
Q920N5	640	Peroxisomal targeting sig	yes	no	0.962	0.398	0.402	1e-50
Q925N3	602	PEX5-related protein OS=R	no	no	0.947	0.416	0.377	3e-48

>sp|Q9FMA3|PEX5_ARATH Peroxisome biogenesis protein 5 OS=Arabidopsis thaliana GN=PEX5 PE=1 SV=1

 Score =  466 bits (1199), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/257 (85%), Positives = 243/257 (94%)

Query: 1   MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA 60
           MNPYVGHP P+KEGQELFRKGLLSEA LALEAEV+KNPEN+EGWRLLG+ HAENDDDQQA
Sbjct: 451 MNPYVGHPEPMKEGQELFRKGLLSEAALALEAEVMKNPENAEGWRLLGVTHAENDDDQQA 510

Query: 61  IAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120
           IAAMMRA EA+PTNLEVLL+LGVSHTNELEQA ALKYLYGWLR+HPKYG IAPPEL+DSL
Sbjct: 511 IAAMMRAQEADPTNLEVLLALGVSHTNELEQATALKYLYGWLRNHPKYGAIAPPELADSL 570

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
           Y+AD+ARLF EA++++PEDADVHIVLGVLYNLSR++D+AI SFQTAL+LKP DYSLWNKL
Sbjct: 571 YHADIARLFNEASQLNPEDADVHIVLGVLYNLSREFDRAITSFQTALQLKPNDYSLWNKL 630

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           GATQANSVQSADAI AYQ+ALDLKPNYVRAWANMGISYANQGMY+ES+ YYVRALAMNPK
Sbjct: 631 GATQANSVQSADAISAYQQALDLKPNYVRAWANMGISYANQGMYKESIPYYVRALAMNPK 690

Query: 241 ADNAWQYLRISLRYAGR 257
           ADNAWQYLR+SL  A R
Sbjct: 691 ADNAWQYLRLSLSCASR 707

Import receptor for peroxisomal-targeting signal one (PTS1). A receptor-cargo complex composed of PEX5, PEX7, a PTS1-containing protein and a PTS2-containing protein is targeted to peroxisomes during import. Necessary for the developmental elimination of obsolete peroxisome matrix proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54MD1|PEX5_DICDI Peroxisomal targeting signal 1 receptor OS=Dictyostelium discoideum GN=pex5 PE=3 SV=1

 Score =  213 bits (543), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 114/260 (43%), Positives = 167/260 (64%), Gaps = 12/260 (4%)

Query: 9   NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAH 68
           + L+ G  LF +G LS++++ALE+EV +NPEN+  W  LGIAHAEND D QA   ++++ 
Sbjct: 361 DTLERGMGLFNEGHLSDSIIALESEVKRNPENAMAWMYLGIAHAENDQDSQATTCLIKSL 420

Query: 69  EAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKY--------GTIAPPELSDSL 120
           + +PTN +  L+L VSHTN+ ++  AL  L  WL+  P+Y        G++ P    D+ 
Sbjct: 421 QIDPTNSKARLALAVSHTNDYQKERALDTLEEWLQRTPEYTALYKQFKGSVDPNSFLDTW 480

Query: 121 YYAD-VARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLW 177
              +    LF+EAAR  P   D +V   LG+LYN+S  YDKA++ F+ AL+  P DY LW
Sbjct: 481 SRHEFTTNLFIEAARSRPSNPDPEVQTALGLLYNMSYDYDKAVDCFKAALQNSPTDYQLW 540

Query: 178 NKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM 237
           NKLGAT ANS +S +A+ AY +AL+ KP+YVRA +N+GISY +  M++ES   ++ A+A+
Sbjct: 541 NKLGATLANSNRSQEALGAYFKALEHKPSYVRARSNLGISYLSLNMFQESATTFLGAIAI 600

Query: 238 NPKADNAWQYLRISLRYAGR 257
           +P A N W  L++  R   R
Sbjct: 601 HP-APNIWDNLKMVFRLMNR 619

Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import.

Dictyostelium discoideum (taxid: 44689)

>sp|P50542|PEX5_HUMAN Peroxisomal targeting signal 1 receptor OS=Homo sapiens GN=PEX5 PE=1 SV=3

 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 117/288 (40%), Positives = 163/288 (56%), Gaps = 33/288 (11%)

Query: 2   NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP   HP P +EG    ++G L  AVL  EA V ++P++ E W+ LG   AEN+ +  AI
Sbjct: 330 NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 389

Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE------ 115
           +A+ R  E +P N   L++L VS TNE  Q  A + L  WLR+ P Y  +  P       
Sbjct: 390 SALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGG 449

Query: 116 -------------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAI 160
                        LSDSL+  +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA+
Sbjct: 450 AGLGPSKRILGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 508

Query: 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220
           + F  AL ++P DY LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N
Sbjct: 509 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 568

Query: 221 QGMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
            G + E+V +++ AL M  K           ++N W  LR++L   G+
Sbjct: 569 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 616

Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import.

Homo sapiens (taxid: 9606)

>sp|Q2M2R8|PEX5_RAT Peroxisomal targeting signal 1 receptor OS=Rattus norvegicus GN=Pex5 PE=1 SV=2

 Score =  204 bits (519), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 119/288 (41%), Positives = 164/288 (56%), Gaps = 33/288 (11%)

Query: 2   NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP   HP P +EG     +G L  AVL  EA V ++P++ E W+ LG   AEN+ +  AI
Sbjct: 331 NPLRDHPQPFEEGLRRLEEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 390

Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYG-TIAPPE----- 115
           +A+ R  E +P N   L++L VS TNE  Q  A + L  WLR+ P Y   +AP E     
Sbjct: 391 SALRRCLELKPDNRTALMALAVSFTNESLQRQACETLRDWLRYSPAYAHLVAPGEEGASG 450

Query: 116 -------------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAI 160
                        LSDSL+  +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA+
Sbjct: 451 AGLGPSKRVLGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 509

Query: 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220
           + F  AL ++P DY LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N
Sbjct: 510 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 569

Query: 221 QGMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
            G + E+V +++ AL M  K           ++N W  LR++L   G+
Sbjct: 570 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 617

Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import.

Rattus norvegicus (taxid: 10116)

>sp|Q1RMV0|PEX5_BOVIN Peroxisomal targeting signal 1 receptor OS=Bos taurus GN=PEX5 PE=2 SV=1

 Score =  203 bits (517), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 118/288 (40%), Positives = 165/288 (57%), Gaps = 33/288 (11%)

Query: 2   NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP   HP P +EG    ++G L  AVL  EA V ++P++ E W+ LG   AEN+ +  AI
Sbjct: 331 NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 390

Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYG-TIAPPE----- 115
           +A+ +  E +P N   L++L VS TNE  Q  A + L  WLR+ P Y   +AP E     
Sbjct: 391 SALRKCLELKPDNRTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVAPGEEGAGG 450

Query: 116 -------------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAI 160
                        LSDSL+  +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA+
Sbjct: 451 VGLGSSKRILGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 509

Query: 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220
           + F  AL ++P DY LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N
Sbjct: 510 DCFTAALSVRPDDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 569

Query: 221 QGMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
            G + E+V +++ AL M  K           ++N W  LR++L   G+
Sbjct: 570 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 617

Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import.

Bos taurus (taxid: 9913)

>sp|O09012|PEX5_MOUSE Peroxisomal targeting signal 1 receptor OS=Mus musculus GN=Pex5 PE=2 SV=2

 Score =  203 bits (517), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/286 (41%), Positives = 164/286 (57%), Gaps = 31/286 (10%)

Query: 2   NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP   HP P +EG     +G L  AVL  EA V ++P++ E W+ LG   AEN+ +  AI
Sbjct: 332 NPLRDHPQPFEEGLHRLEEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 391

Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYG-TIAPPE----- 115
           +A+ R  E +P N   L++L VS TNE  Q  A + L  WLR+ P Y   +AP E     
Sbjct: 392 SALRRCLELKPDNRTALMALAVSFTNESLQRQACETLRDWLRYSPAYAHLVAPGEEGATG 451

Query: 116 -----------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIES 162
                      LSDSL+  +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA++ 
Sbjct: 452 AGPSKRILGSLLSDSLFL-EVKDLFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 510

Query: 163 FQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG 222
           F  AL ++P DY +WNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N G
Sbjct: 511 FTAALSVRPNDYLMWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 570

Query: 223 MYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
            + E+V +++ AL M  K           ++N W  LR++L   G+
Sbjct: 571 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 616

Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import.

Mus musculus (taxid: 10090)

>sp|O70525|PEX5_CAVPO Peroxisomal targeting signal 1 receptor OS=Cavia porcellus GN=PEX5 PE=2 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/288 (40%), Positives = 161/288 (55%), Gaps = 33/288 (11%)

Query: 2   NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP   HP P +EG     +G L  AVL  EA V ++P++ E W+ LG   AEN+ +  AI
Sbjct: 331 NPLRDHPQPFEEGLLRLEEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 390

Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE------ 115
           +A+ R  E +P N   L++L VS TNE  Q  A + L  WLR  P Y  +  P       
Sbjct: 391 SALRRCLELKPDNRTALMALAVSFTNESLQRQACETLRDWLRCTPAYAHLVTPAEEGAGG 450

Query: 116 -------------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAI 160
                        LSDSL+  +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA+
Sbjct: 451 AGLGSSKRILGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 509

Query: 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220
           + F  AL ++P DY LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N
Sbjct: 510 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 569

Query: 221 QGMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
            G + E+V +++ AL M  K           ++N W  LR++L   G+
Sbjct: 570 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 617

Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import.

Cavia porcellus (taxid: 10141)

>sp|Q5ZMQ9|PEX5_CHICK Peroxisomal targeting signal 1 receptor OS=Gallus gallus GN=PEX5 PE=2 SV=1

 Score =  201 bits (511), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 117/289 (40%), Positives = 165/289 (57%), Gaps = 34/289 (11%)

Query: 2   NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP   HP+  +EG++   +G L  AVL  EA V + P++ E W+ LG   AEN+ +  AI
Sbjct: 335 NPMRDHPDAFEEGRKRLEEGDLPNAVLLFEAAVQQKPDHMEAWQYLGTTQAENEQELLAI 394

Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI---APPE--- 115
           +A+ R  E +P NL  L++L VS TNE  Q  A + L  WL H P Y  +   AP E   
Sbjct: 395 SALRRCLELQPGNLTALMALAVSFTNESLQKQACETLRDWLHHKPAYAHLLEKAPEENAS 454

Query: 116 --------------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKA 159
                         LSDSL+  +V  LF+ A R +P   D DV   LGVL+NLS +Y+KA
Sbjct: 455 ETNLGTSKRVLGSLLSDSLF-VEVKELFLAAVRSNPSTVDPDVQCGLGVLFNLSGEYEKA 513

Query: 160 IESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA 219
           ++ F  AL ++P D+ LWNKLGAT AN  +S +A+ AY+RAL+L+P Y+R+  N+GIS  
Sbjct: 514 VDCFSAALSVRPNDHLLWNKLGATLANGNRSEEAVAAYRRALELQPGYIRSRYNLGISCI 573

Query: 220 NQGMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
           N G + E+V +++ AL M  K           +DN W  LR++L   G+
Sbjct: 574 NLGAHREAVEHFLEALHMQQKSRGPRGQQGAMSDNIWSTLRMALSMLGQ 622

Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import.

Gallus gallus (taxid: 9031)

>sp|Q920N5|PEX5_CRIGR Peroxisomal targeting signal 1 receptor OS=Cricetulus griseus GN=PEX5 PE=1 SV=1

 Score =  200 bits (508), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/288 (40%), Positives = 161/288 (55%), Gaps = 33/288 (11%)

Query: 2   NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP   HP   +EG     +G L  AVL  EA V ++P++ E W+ LG   AEN+ +  AI
Sbjct: 331 NPLRDHPQAFEEGLRRLEEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 390

Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE------ 115
           +A+ R  E +P N   L++L VS TNE  Q  A + L  WLR+ P Y  +  P       
Sbjct: 391 SALRRCLELKPDNRTALMALAVSFTNESLQRQACETLRDWLRYSPAYAHLVTPGEEGASG 450

Query: 116 -------------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAI 160
                        LSDSL+  +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA+
Sbjct: 451 AGLGPSKRVLGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 509

Query: 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220
           + F  AL ++P DY LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N
Sbjct: 510 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 569

Query: 221 QGMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
            G + E+V +++ AL M  K           ++N W  LR++L   G+
Sbjct: 570 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 617

Binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import.

Cricetulus griseus (taxid: 10029)

>sp|Q925N3|PEX5R_RAT PEX5-related protein OS=Rattus norvegicus GN=Pex5l PE=1 SV=1

 Score =  191 bits (486), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 105/278 (37%), Positives = 166/278 (59%), Gaps = 27/278 (9%)

Query: 2   NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP+   P   +EG +  ++G L   +L +EA +L++P N+E W+ LGI  AEN+++Q AI
Sbjct: 297 NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGNAEAWQFLGITQAENENEQAAI 356

Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI-----APPEL 116
            A+ R  E +P NL+ L++L VS+TN   Q  A + L  W++ +PKY  +       P L
Sbjct: 357 VALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGL 416

Query: 117 S--------DSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTA 166
           +        DS     V  L++EAA  + +  D D+   LGVL++LS ++++AI++F  A
Sbjct: 417 TRRMSKSPVDSSVLEGVKDLYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 476

Query: 167 LKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE 226
           L ++P+DYSLWN+LGAT AN  +S +A+ AY RAL+++P ++R+  N+GIS  N G Y E
Sbjct: 477 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 536

Query: 227 SVRYYVRALAMNPK------------ADNAWQYLRISL 252
           +V  ++ AL++  K            + N W  LRI+L
Sbjct: 537 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 574

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
224122208	750	predicted protein [Populus trichocarpa]	0.969	0.342	0.929	1e-136
225463548	741	PREDICTED: peroxisome biogenesis protein	0.969	0.346	0.906	1e-133
296090052	736	unnamed protein product [Vitis vinifera]	0.969	0.349	0.906	1e-133
224056905	752	predicted protein [Populus trichocarpa]	0.969	0.341	0.906	1e-133
356510270	738	PREDICTED: peroxisome biogenesis protein	0.969	0.348	0.894	1e-133
357455983	384	Peroxisomal targeting signal 1 receptor	0.969	0.669	0.898	1e-132
449494351	468	PREDICTED: peroxisome biogenesis protein	0.969	0.549	0.883	1e-132
3582781	332	peroxisomal targeting sequence 1 recepto	0.969	0.774	0.891	1e-131
3806016	741	peroxisomal targeting signal 1 receptor	0.969	0.346	0.891	1e-131
449460479	748	PREDICTED: peroxisome biogenesis protein	0.969	0.343	0.883	1e-131

>gi|224122208|ref|XP_002330566.1| predicted protein [Populus trichocarpa] gi|222872124|gb|EEF09255.1| predicted protein [Populus trichocarpa]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 239/257 (92%), Positives = 248/257 (96%)

Query: 1   MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA 60
           MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNP+N+EGWRLLGIAHAENDDDQQA
Sbjct: 473 MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQA 532

Query: 61  IAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120
           IAAMMRAHEA PTNLEVLL+LGVSHTNELEQAAALKYLYGWLRHHPKYGT+A PELSDSL
Sbjct: 533 IAAMMRAHEAGPTNLEVLLALGVSHTNELEQAAALKYLYGWLRHHPKYGTLANPELSDSL 592

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
           YYADVARLF EAA MSPEDADVHIVLGVLYNLSR+YDKAI SFQ ALKLKPQDYSLWNKL
Sbjct: 593 YYADVARLFNEAAEMSPEDADVHIVLGVLYNLSREYDKAISSFQRALKLKPQDYSLWNKL 652

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           GATQANSVQSADAILAYQ+ALDLKPNYVRAWANMGISYANQGM+E+S+RYYVRALAMNPK
Sbjct: 653 GATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPK 712

Query: 241 ADNAWQYLRISLRYAGR 257
           ADNAWQYLRISL  A R
Sbjct: 713 ADNAWQYLRISLSCASR 729

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463548|ref|XP_002266713.1| PREDICTED: peroxisome biogenesis protein 5-like [Vitis vinifera]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 233/257 (90%), Positives = 246/257 (95%)

Query: 1   MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA 60
           MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNP+N+EGWRLLGIAHAENDDDQQA
Sbjct: 464 MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQA 523

Query: 61  IAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120
           IA+MMRA E EPTNLEVLL+LGVSHTNELEQAAALKYLY WLRHHPKYGT+AP E SDSL
Sbjct: 524 IASMMRAQEVEPTNLEVLLALGVSHTNELEQAAALKYLYSWLRHHPKYGTLAPMEQSDSL 583

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
           YYADV RLF +AA+MSPEDADVHIVLGVLYNLSR+YDKAI SFQTALKLKP+DYSLWNKL
Sbjct: 584 YYADVVRLFNDAAQMSPEDADVHIVLGVLYNLSREYDKAIASFQTALKLKPRDYSLWNKL 643

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           GATQANSVQSADAILAYQ+ALDLKPNYVRAWANMGISYANQGM+E+S+RYYVRALAMNPK
Sbjct: 644 GATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPK 703

Query: 241 ADNAWQYLRISLRYAGR 257
           ADNAWQYLRISL  A R
Sbjct: 704 ADNAWQYLRISLSCASR 720

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090052|emb|CBI39871.3| unnamed protein product [Vitis vinifera]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 233/257 (90%), Positives = 246/257 (95%)

Query: 1   MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA 60
           MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNP+N+EGWRLLGIAHAENDDDQQA
Sbjct: 459 MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQA 518

Query: 61  IAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120
           IA+MMRA E EPTNLEVLL+LGVSHTNELEQAAALKYLY WLRHHPKYGT+AP E SDSL
Sbjct: 519 IASMMRAQEVEPTNLEVLLALGVSHTNELEQAAALKYLYSWLRHHPKYGTLAPMEQSDSL 578

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
           YYADV RLF +AA+MSPEDADVHIVLGVLYNLSR+YDKAI SFQTALKLKP+DYSLWNKL
Sbjct: 579 YYADVVRLFNDAAQMSPEDADVHIVLGVLYNLSREYDKAIASFQTALKLKPRDYSLWNKL 638

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           GATQANSVQSADAILAYQ+ALDLKPNYVRAWANMGISYANQGM+E+S+RYYVRALAMNPK
Sbjct: 639 GATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPK 698

Query: 241 ADNAWQYLRISLRYAGR 257
           ADNAWQYLRISL  A R
Sbjct: 699 ADNAWQYLRISLSCASR 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056905|ref|XP_002299082.1| predicted protein [Populus trichocarpa] gi|222846340|gb|EEE83887.1| predicted protein [Populus trichocarpa]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 233/257 (90%), Positives = 248/257 (96%)

Query: 1   MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA 60
           MNPYVGHPNPLKEGQ+LFRKGLLSEAVLALEAEVLKNP+N+EGWRLLGIAHAENDDDQQA
Sbjct: 475 MNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQA 534

Query: 61  IAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120
           IAAMMRAHEA+PTNLEVLL+LGVSHTNE EQAAALKYLYGWL+HH KY T+A PELSDSL
Sbjct: 535 IAAMMRAHEADPTNLEVLLALGVSHTNEFEQAAALKYLYGWLQHHQKYRTLATPELSDSL 594

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
           YYA+VARLF EAA+M+PEDADVHIVLGVLYNLSR+YDKAI  FQTALKLKPQDYSLWNKL
Sbjct: 595 YYANVARLFNEAAQMAPEDADVHIVLGVLYNLSREYDKAIAFFQTALKLKPQDYSLWNKL 654

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           GATQANSVQSADAILAYQ+ALDLKPNYVRAWANMGISYANQGMYE+S+RYYVRALAMNPK
Sbjct: 655 GATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMYEDSIRYYVRALAMNPK 714

Query: 241 ADNAWQYLRISLRYAGR 257
           ADNAWQYLRISL +A R
Sbjct: 715 ADNAWQYLRISLSFASR 731

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510270|ref|XP_003523862.1| PREDICTED: peroxisome biogenesis protein 5-like [Glycine max]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/257 (89%), Positives = 248/257 (96%)

Query: 1   MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA 60
           +NPYVGHPNPLKEGQ+LFRKGLLSEAVLALEAEVLKNPEN+EGWRLLGIAHAENDDDQQA
Sbjct: 460 LNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVLKNPENAEGWRLLGIAHAENDDDQQA 519

Query: 61  IAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120
           IAAMMRA EA+PTNLEVLL+LGVSHTNELEQ AALKYLYGWLRHHPKYGT+APPE++DSL
Sbjct: 520 IAAMMRAQEADPTNLEVLLALGVSHTNELEQTAALKYLYGWLRHHPKYGTLAPPEMADSL 579

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
           YYADVARLF +AA +SP+DADVHIVLGV+YNLSR+YDKAI SF+ ALKLKPQDYSLWNKL
Sbjct: 580 YYADVARLFNDAAELSPDDADVHIVLGVMYNLSREYDKAIASFERALKLKPQDYSLWNKL 639

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           GATQANSVQSADAI+AYQ+ALDLKPNYVRAWANMGISYANQGMY+ESVRYYVRALAMNPK
Sbjct: 640 GATQANSVQSADAIMAYQQALDLKPNYVRAWANMGISYANQGMYDESVRYYVRALAMNPK 699

Query: 241 ADNAWQYLRISLRYAGR 257
           A+NAWQYLRISL  A R
Sbjct: 700 AENAWQYLRISLSCASR 716

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455983|ref|XP_003598272.1| Peroxisomal targeting signal 1 receptor [Medicago truncatula] gi|355487320|gb|AES68523.1| Peroxisomal targeting signal 1 receptor [Medicago truncatula]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/257 (89%), Positives = 247/257 (96%)

Query: 1   MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA 60
           +NPYVGHPNPLKEGQ+LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA
Sbjct: 106 LNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA 165

Query: 61  IAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120
           IAAMMRA EA+PTNLEVLL+LGVSHTNELEQ AALKYL+GWLR+HPKYGTIAPPE+SDSL
Sbjct: 166 IAAMMRAQEADPTNLEVLLALGVSHTNELEQNAALKYLFGWLRNHPKYGTIAPPEMSDSL 225

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
           YYADVARLF EAA +SP+DADVHIVLGVLYNLSR+YDKAI +F+ ALKLKPQDYSLWNKL
Sbjct: 226 YYADVARLFNEAAVISPDDADVHIVLGVLYNLSREYDKAIAAFEQALKLKPQDYSLWNKL 285

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           GATQANSVQSADAI AYQ+ALDLKPNYVRAWANMGISYANQGMY+ES+RYYVRALAMNPK
Sbjct: 286 GATQANSVQSADAIAAYQQALDLKPNYVRAWANMGISYANQGMYDESIRYYVRALAMNPK 345

Query: 241 ADNAWQYLRISLRYAGR 257
           A+NAWQYLRISL  A R
Sbjct: 346 AENAWQYLRISLSCASR 362

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494351|ref|XP_004159522.1| PREDICTED: peroxisome biogenesis protein 5-like [Cucumis sativus]

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/257 (88%), Positives = 246/257 (95%)

Query: 1   MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA 60
           MNPYVGHPNPLKEGQ+LFRKGLLSEAVLALEAEV+KNPENSEGWRLLGIAHAENDDDQQA
Sbjct: 191 MNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVMKNPENSEGWRLLGIAHAENDDDQQA 250

Query: 61  IAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120
           IAAM RA + +PTNLEVLL+LGVSHTNELEQAAAL+YLYGWL+HHPKYGT+A PELSDSL
Sbjct: 251 IAAMKRALDVDPTNLEVLLALGVSHTNELEQAAALRYLYGWLQHHPKYGTLAKPELSDSL 310

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
           YYADVA LF EAA+M P+DADVHIVLGVLYNLSR++DKAI SFQTALKLKPQDYSLWNKL
Sbjct: 311 YYADVAGLFNEAAQMFPDDADVHIVLGVLYNLSREFDKAIASFQTALKLKPQDYSLWNKL 370

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           GATQANS+QSADAILAYQ+ALDLKPNYVRAWANMGISYANQG+YEES++YYVR+L+MNPK
Sbjct: 371 GATQANSIQSADAILAYQQALDLKPNYVRAWANMGISYANQGLYEESIKYYVRSLSMNPK 430

Query: 241 ADNAWQYLRISLRYAGR 257
           ADNAWQYLRISL  A R
Sbjct: 431 ADNAWQYLRISLSCASR 447

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3582781|gb|AAC69181.1| peroxisomal targeting sequence 1 receptor [Nicotiana tabacum]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/257 (89%), Positives = 245/257 (95%)

Query: 1   MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA 60
           +NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN+EGWRLLGIAHAENDDDQQA
Sbjct: 55  LNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENAEGWRLLGIAHAENDDDQQA 114

Query: 61  IAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120
           IAAMMRA EA+PTNLEVLLSLGVSHTNELEQ AALKYLY WLRHHPKYG+IAP +   S 
Sbjct: 115 IAAMMRAQEADPTNLEVLLSLGVSHTNELEQQAALKYLYSWLRHHPKYGSIAPQDQPVSF 174

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
           Y+ADV+RLF +AA+MSP+DADVHIVLGVLYNLSR+YDKAIESF+TALKLKP+DYSLWNKL
Sbjct: 175 YHADVSRLFTDAAQMSPDDADVHIVLGVLYNLSREYDKAIESFKTALKLKPRDYSLWNKL 234

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           GATQANSVQSADAILAYQ+ALDLKPNYVRAWANMGISYANQGMYE+S+RYYVRALAMNPK
Sbjct: 235 GATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMYEDSIRYYVRALAMNPK 294

Query: 241 ADNAWQYLRISLRYAGR 257
           ADNAWQYLRISL  A R
Sbjct: 295 ADNAWQYLRISLSCASR 311

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3806016|gb|AAC69177.1| peroxisomal targeting signal 1 receptor [Nicotiana tabacum]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/257 (89%), Positives = 245/257 (95%)

Query: 1   MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA 60
           +NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN+EGWRLLGIAHAENDDDQQA
Sbjct: 464 LNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENAEGWRLLGIAHAENDDDQQA 523

Query: 61  IAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120
           IAAMMRA EA+PTNLEVLLSLGVSHTNELEQ AALKYLY WLRHHPKYG+IAP +   S 
Sbjct: 524 IAAMMRAQEADPTNLEVLLSLGVSHTNELEQQAALKYLYSWLRHHPKYGSIAPQDQPVSF 583

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
           Y+ADV+RLF +AA+MSP+DADVHIVLGVLYNLSR+YDKAIESF+TALKLKP+DYSLWNKL
Sbjct: 584 YHADVSRLFTDAAQMSPDDADVHIVLGVLYNLSREYDKAIESFKTALKLKPRDYSLWNKL 643

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           GATQANSVQSADAILAYQ+ALDLKPNYVRAWANMGISYANQGMYE+S+RYYVRALAMNPK
Sbjct: 644 GATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMYEDSIRYYVRALAMNPK 703

Query: 241 ADNAWQYLRISLRYAGR 257
           ADNAWQYLRISL  A R
Sbjct: 704 ADNAWQYLRISLSCASR 720

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460479|ref|XP_004147973.1| PREDICTED: peroxisome biogenesis protein 5-like [Cucumis sativus]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/257 (88%), Positives = 246/257 (95%)

Query: 1   MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA 60
           MNPYVGHPNPLKEGQ+LFRKGLLSEAVLALEAEV+KNPENSEGWRLLGIAHAENDDDQQA
Sbjct: 471 MNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVMKNPENSEGWRLLGIAHAENDDDQQA 530

Query: 61  IAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120
           IAAM RA + +PTNLEVLL+LGVSHTNELEQAAAL+YLYGWL+HHPKYGT+A PELSDSL
Sbjct: 531 IAAMKRALDVDPTNLEVLLALGVSHTNELEQAAALRYLYGWLQHHPKYGTLAKPELSDSL 590

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
           YYADVA LF EAA+M P+DADVHIVLGVLYNLSR++DKAI SFQTALKLKPQDYSLWNKL
Sbjct: 591 YYADVAGLFNEAAQMFPDDADVHIVLGVLYNLSREFDKAIASFQTALKLKPQDYSLWNKL 650

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           GATQANS+QSADAILAYQ+ALDLKPNYVRAWANMGISYANQG+YEES++YYVR+L+MNPK
Sbjct: 651 GATQANSIQSADAILAYQQALDLKPNYVRAWANMGISYANQGLYEESIKYYVRSLSMNPK 710

Query: 241 ADNAWQYLRISLRYAGR 257
           ADNAWQYLRISL  A R
Sbjct: 711 ADNAWQYLRISLSCASR 727

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2177606	728	PEX5 "AT5G56290" [Arabidopsis	0.969	0.353	0.813	1.9e-113
DICTYBASE|DDB_G0286033	641	pex5 "peroxisomal biogenesis f	0.928	0.383	0.414	2.9e-48
UNIPROTKB|Q1RMV0	640	PEX5 "Peroxisomal targeting si	0.532	0.220	0.458	8.8e-46
UNIPROTKB|F1NB93	539	PEX5 "Peroxisomal targeting si	0.532	0.261	0.445	1.1e-45
UNIPROTKB|F1NQ04	541	PEX5 "Peroxisomal targeting si	0.532	0.260	0.445	1.2e-45
UNIPROTKB|Q5ZMQ9	645	PEX5 "Peroxisomal targeting si	0.532	0.218	0.445	4.4e-45
UNIPROTKB|E2RND5	640	PEX5 "Uncharacterized protein"	0.532	0.220	0.458	4.8e-45
UNIPROTKB|O70525	640	PEX5 "Peroxisomal targeting si	0.532	0.220	0.458	4.8e-45
UNIPROTKB|I3LKI4	646	PEX5 "Uncharacterized protein"	0.532	0.218	0.458	1.7e-44
FB|FBgn0023516	614	Pex5 "Peroxin 5" [Drosophila m	0.916	0.395	0.387	1.9e-42

TAIR|locus:2177606 PEX5 "AT5G56290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 209/257 (81%), Positives = 230/257 (89%)

Query:     1 MNPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQA 60
             MNPYVGHP P+KEGQELFRKG              KNPEN+EGWRLLG+ HAENDDDQQA
Sbjct:   451 MNPYVGHPEPMKEGQELFRKGLLSEAALALEAEVMKNPENAEGWRLLGVTHAENDDDQQA 510

Query:    61 IAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120
             IAAMMRA EA+PTNLEVLL+LGVSHTNELEQA ALKYLYGWLR+HPKYG IAPPEL+DSL
Sbjct:   511 IAAMMRAQEADPTNLEVLLALGVSHTNELEQATALKYLYGWLRNHPKYGAIAPPELADSL 570

Query:   121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
             Y+AD+ARLF EA++++PEDADVHIVLGVLYNLSR++D+AI SFQTAL+LKP DYSLWNKL
Sbjct:   571 YHADIARLFNEASQLNPEDADVHIVLGVLYNLSREFDRAITSFQTALQLKPNDYSLWNKL 630

Query:   181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
             GATQANSVQSADAI AYQ+ALDLKPNYVRAWANMGISYANQGMY+ES+ YYVRALAMNPK
Sbjct:   631 GATQANSVQSADAISAYQQALDLKPNYVRAWANMGISYANQGMYKESIPYYVRALAMNPK 690

Query:   241 ADNAWQYLRISLRYAGR 257
             ADNAWQYLR+SL  A R
Sbjct:   691 ADNAWQYLRLSLSCASR 707

GO:0005052 "peroxisome matrix targeting signal-1 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0006625 "protein targeting to peroxisome" evidence=IGI;ISS

GO:0016558 "protein import into peroxisome matrix" evidence=RCA;IBA

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

DICTYBASE|DDB_G0286033 pex5 "peroxisomal biogenesis factor 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 107/258 (41%), Positives = 154/258 (59%)

Query:    11 LKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA 70
             L+ G  LF +G              +NPEN+  W  LGIAHAEND D QA   ++++ + 
Sbjct:   363 LERGMGLFNEGHLSDSIIALESEVKRNPENAMAWMYLGIAHAENDQDSQATTCLIKSLQI 422

Query:    71 EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKY--------GTIAPPELSDSLYY 122
             +PTN +  L+L VSHTN+ ++  AL  L  WL+  P+Y        G++ P    D+   
Sbjct:   423 DPTNSKARLALAVSHTNDYQKERALDTLEEWLQRTPEYTALYKQFKGSVDPNSFLDTWSR 482

Query:   123 AD-VARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNK 179
              +    LF+EAAR  P   D +V   LG+LYN+S  YDKA++ F+ AL+  P DY LWNK
Sbjct:   483 HEFTTNLFIEAARSRPSNPDPEVQTALGLLYNMSYDYDKAVDCFKAALQNSPTDYQLWNK 542

Query:   180 LGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
             LGAT ANS +S +A+ AY +AL+ KP+YVRA +N+GISY +  M++ES   ++ A+A++P
Sbjct:   543 LGATLANSNRSQEALGAYFKALEHKPSYVRARSNLGISYLSLNMFQESATTFLGAIAIHP 602

Query:   240 KADNAWQYLRISLRYAGR 257
              A N W  L++  R   R
Sbjct:   603 -APNIWDNLKMVFRLMNR 619

GO:0007031 "peroxisome organization" evidence=ISS

GO:0006625 "protein targeting to peroxisome" evidence=ISS

GO:0005777 "peroxisome" evidence=IEA;ISS

GO:0000268 "peroxisome targeting sequence binding" evidence=ISS

GO:0016560 "protein import into peroxisome matrix, docking" evidence=IBA

GO:0016558 "protein import into peroxisome matrix" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0005778 "peroxisomal membrane" evidence=IEA;IBA

GO:0005052 "peroxisome matrix targeting signal-1 binding" evidence=IBA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q1RMV0 PEX5 "Peroxisomal targeting signal 1 receptor" [Bos taurus (taxid:9913)]

 Score = 326 (119.8 bits), Expect = 8.8e-46, Sum P(2) = 8.8e-46
 Identities = 71/155 (45%), Positives = 99/155 (63%)

Query:   116 LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173
             LSDSL+  +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA++ F  AL ++P D
Sbjct:   464 LSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPDD 522

Query:   174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR 233
             Y LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N G + E+V +++ 
Sbjct:   523 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 582

Query:   234 ALAMNPKA-----------DNAWQYLRISLRYAGR 257
             AL M  K+           +N W  LR++L   G+
Sbjct:   583 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 617

GO:0051262 "protein tetramerization" evidence=ISS

GO:0016561 "protein import into peroxisome matrix, translocation" evidence=ISS

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0006625 "protein targeting to peroxisome" evidence=ISS

GO:0005829 "cytosol" evidence=ISS;IBA

GO:0005782 "peroxisomal matrix" evidence=ISS

GO:0005777 "peroxisome" evidence=ISS

GO:0005052 "peroxisome matrix targeting signal-1 binding" evidence=ISS;IBA

GO:0016560 "protein import into peroxisome matrix, docking" evidence=IBA

GO:0016558 "protein import into peroxisome matrix" evidence=IBA

GO:0005778 "peroxisomal membrane" evidence=IBA

GO:1901094 "negative regulation of protein homotetramerization" evidence=IEA

GO:0050905 "neuromuscular process" evidence=IEA

GO:0048468 "cell development" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0045046 "protein import into peroxisome membrane" evidence=IEA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0021895 "cerebral cortex neuron differentiation" evidence=IEA

GO:0021795 "cerebral cortex cell migration" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IEA

GO:0007006 "mitochondrial membrane organization" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=IEA

UNIPROTKB|F1NB93 PEX5 "Peroxisomal targeting signal 1 receptor" [Gallus gallus (taxid:9031)]

 Score = 318 (117.0 bits), Expect = 1.1e-45, Sum P(2) = 1.1e-45
 Identities = 69/155 (44%), Positives = 99/155 (63%)

Query:   116 LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173
             LSDSL+  +V  LF+ A R +P   D DV   LGVL+NLS +Y+KA++ F  AL ++P D
Sbjct:   363 LSDSLF-VEVKELFLAAVRSNPSTVDPDVQCGLGVLFNLSGEYEKAVDCFSAALSVRPND 421

Query:   174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR 233
             + LWNKLGAT AN  +S +A+ AY+RAL+L+P Y+R+  N+GIS  N G + E+V +++ 
Sbjct:   422 HLLWNKLGATLANGNRSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 481

Query:   234 ALAMNPKA-----------DNAWQYLRISLRYAGR 257
             AL M  K+           DN W  LR++L   G+
Sbjct:   482 ALHMQQKSRGPRGQQGAMSDNIWSTLRMALSMLGQ 516

GO:0000038 "very long-chain fatty acid metabolic process" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0005052 "peroxisome matrix targeting signal-1 binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0007006 "mitochondrial membrane organization" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016560 "protein import into peroxisome matrix, docking" evidence=IEA

GO:0016561 "protein import into peroxisome matrix, translocation" evidence=IEA

GO:0021795 "cerebral cortex cell migration" evidence=IEA

GO:0021895 "cerebral cortex neuron differentiation" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IEA

GO:0045046 "protein import into peroxisome membrane" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0048468 "cell development" evidence=IEA

GO:0050905 "neuromuscular process" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:1901094 "negative regulation of protein homotetramerization" evidence=IEA

UNIPROTKB|F1NQ04 PEX5 "Peroxisomal targeting signal 1 receptor" [Gallus gallus (taxid:9031)]

 Score = 318 (117.0 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
 Identities = 69/155 (44%), Positives = 99/155 (63%)

Query:   116 LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173
             LSDSL+  +V  LF+ A R +P   D DV   LGVL+NLS +Y+KA++ F  AL ++P D
Sbjct:   365 LSDSLF-VEVKELFLAAVRSNPSTVDPDVQCGLGVLFNLSGEYEKAVDCFSAALSVRPND 423

Query:   174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR 233
             + LWNKLGAT AN  +S +A+ AY+RAL+L+P Y+R+  N+GIS  N G + E+V +++ 
Sbjct:   424 HLLWNKLGATLANGNRSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 483

Query:   234 ALAMNPKA-----------DNAWQYLRISLRYAGR 257
             AL M  K+           DN W  LR++L   G+
Sbjct:   484 ALHMQQKSRGPRGQQGAMSDNIWSTLRMALSMLGQ 518

GO:0000038 "very long-chain fatty acid metabolic process" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0005052 "peroxisome matrix targeting signal-1 binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0007006 "mitochondrial membrane organization" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016560 "protein import into peroxisome matrix, docking" evidence=IEA

GO:0016561 "protein import into peroxisome matrix, translocation" evidence=IEA

GO:0021795 "cerebral cortex cell migration" evidence=IEA

GO:0021895 "cerebral cortex neuron differentiation" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IEA

GO:0045046 "protein import into peroxisome membrane" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0048468 "cell development" evidence=IEA

GO:0050905 "neuromuscular process" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:1901094 "negative regulation of protein homotetramerization" evidence=IEA

UNIPROTKB|Q5ZMQ9 PEX5 "Peroxisomal targeting signal 1 receptor" [Gallus gallus (taxid:9031)]

 Score = 318 (117.0 bits), Expect = 4.4e-45, Sum P(2) = 4.4e-45
 Identities = 69/155 (44%), Positives = 99/155 (63%)

Query:   116 LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173
             LSDSL+  +V  LF+ A R +P   D DV   LGVL+NLS +Y+KA++ F  AL ++P D
Sbjct:   469 LSDSLF-VEVKELFLAAVRSNPSTVDPDVQCGLGVLFNLSGEYEKAVDCFSAALSVRPND 527

Query:   174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR 233
             + LWNKLGAT AN  +S +A+ AY+RAL+L+P Y+R+  N+GIS  N G + E+V +++ 
Sbjct:   528 HLLWNKLGATLANGNRSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 587

Query:   234 ALAMNPKA-----------DNAWQYLRISLRYAGR 257
             AL M  K+           DN W  LR++L   G+
Sbjct:   588 ALHMQQKSRGPRGQQGAMSDNIWSTLRMALSMLGQ 622

GO:0005052 "peroxisome matrix targeting signal-1 binding" evidence=IBA

GO:0005778 "peroxisomal membrane" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0016558 "protein import into peroxisome matrix" evidence=IBA

GO:0016560 "protein import into peroxisome matrix, docking" evidence=IBA

UNIPROTKB|E2RND5 PEX5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 326 (119.8 bits), Expect = 4.8e-45, Sum P(2) = 4.8e-45
 Identities = 71/155 (45%), Positives = 99/155 (63%)

Query:   116 LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173
             LSDSL+  +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA++ F  AL ++P D
Sbjct:   464 LSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 522

Query:   174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR 233
             Y LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N G + E+V +++ 
Sbjct:   523 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 582

Query:   234 ALAMNPKA-----------DNAWQYLRISLRYAGR 257
             AL M  K+           +N W  LR++L   G+
Sbjct:   583 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 617

GO:1901094 "negative regulation of protein homotetramerization" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0050905 "neuromuscular process" evidence=IEA

GO:0048468 "cell development" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0045046 "protein import into peroxisome membrane" evidence=IEA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0021895 "cerebral cortex neuron differentiation" evidence=IEA

GO:0021795 "cerebral cortex cell migration" evidence=IEA

GO:0016561 "protein import into peroxisome matrix, translocation" evidence=IEA

GO:0016560 "protein import into peroxisome matrix, docking" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IEA

GO:0007006 "mitochondrial membrane organization" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005052 "peroxisome matrix targeting signal-1 binding" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=IEA

UNIPROTKB|O70525 PEX5 "Peroxisomal targeting signal 1 receptor" [Cavia porcellus (taxid:10141)]

 Score = 326 (119.8 bits), Expect = 4.8e-45, Sum P(2) = 4.8e-45
 Identities = 71/155 (45%), Positives = 99/155 (63%)

Query:   116 LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173
             LSDSL+  +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA++ F  AL ++P D
Sbjct:   464 LSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 522

Query:   174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR 233
             Y LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N G + E+V +++ 
Sbjct:   523 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 582

Query:   234 ALAMNPKA-----------DNAWQYLRISLRYAGR 257
             AL M  K+           +N W  LR++L   G+
Sbjct:   583 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 617

GO:0005052 "peroxisome matrix targeting signal-1 binding" evidence=ISS

GO:0005777 "peroxisome" evidence=ISS

GO:0005782 "peroxisomal matrix" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006625 "protein targeting to peroxisome" evidence=ISS

GO:0016561 "protein import into peroxisome matrix, translocation" evidence=ISS

GO:0051262 "protein tetramerization" evidence=ISS

UNIPROTKB|I3LKI4 PEX5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 326 (119.8 bits), Expect = 1.7e-44, Sum P(2) = 1.7e-44
 Identities = 71/155 (45%), Positives = 99/155 (63%)

Query:   116 LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173
             LSDSL+  +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA++ F  AL ++P D
Sbjct:   470 LSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 528

Query:   174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR 233
             Y LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N G + E+V +++ 
Sbjct:   529 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 588

Query:   234 ALAMNPKA-----------DNAWQYLRISLRYAGR 257
             AL M  K+           +N W  LR++L   G+
Sbjct:   589 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 623

GO:1901094 "negative regulation of protein homotetramerization" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0050905 "neuromuscular process" evidence=IEA

GO:0048468 "cell development" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0045046 "protein import into peroxisome membrane" evidence=IEA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0021895 "cerebral cortex neuron differentiation" evidence=IEA

GO:0021795 "cerebral cortex cell migration" evidence=IEA

GO:0016561 "protein import into peroxisome matrix, translocation" evidence=IEA

GO:0016560 "protein import into peroxisome matrix, docking" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IEA

GO:0007006 "mitochondrial membrane organization" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005052 "peroxisome matrix targeting signal-1 binding" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=IEA

FB|FBgn0023516 Pex5 "Peroxin 5" [Drosophila melanogaster (taxid:7227)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 100/258 (38%), Positives = 150/258 (58%)

Query:     2 NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
             NP     NP ++G+E   KG              K PE +E W+LLG +  EN+ D QAI
Sbjct:   301 NPMSDVENPFEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAI 360

Query:    62 AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI--APPEL--- 116
             AA+ RA++ +P N +VL++L   +TNE  Q  A++ L  WL  HPKY  +  A PEL   
Sbjct:   361 AALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMLCNWLTVHPKYQHLVAAHPELQAE 420

Query:   117 ----SDSLY----YADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTA 166
                 + SL       D+ ++++EA R  P   DA+V   LGVLYNLS ++DKA++ +Q+A
Sbjct:   421 GTSLASSLIGPSKLRDLQQIYLEAVRQHPSEVDAEVQDALGVLYNLSGEFDKAVDCYQSA 480

Query:   167 LKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE 226
             L++ PQ+   WN+LGA+ AN  +S +A+ AYQ+AL L+P ++R   N+G+   N   Y+E
Sbjct:   481 LQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKE 540

Query:   227 SVRYYVRALAMNPKADNA 244
             +V + + AL M    + A
Sbjct:   541 AVEHLLTALTMQAHTNAA 558

GO:0000268 "peroxisome targeting sequence binding" evidence=ISS

GO:0072347 "response to anesthetic" evidence=IMP

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005829 "cytosol" evidence=IBA

GO:0005052 "peroxisome matrix targeting signal-1 binding" evidence=IBA

GO:0016558 "protein import into peroxisome matrix" evidence=IBA

GO:0016560 "protein import into peroxisome matrix, docking" evidence=IBA

GO:0005778 "peroxisomal membrane" evidence=IBA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FMA3	PEX5_ARATH	No assigned EC number	0.8599	0.9698	0.3530	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_1400001 hypothetical protein (750 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-18
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-11
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-10
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	2e-09
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-09
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	5e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	8e-08
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	2e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-07
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	1e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-06
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	2e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-06
PRK11447	1157	PRK11447, PRK11447, cellulose synthase subunit Bcs	7e-06
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	1e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-05
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	4e-05
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	1e-04
COG2956	389	COG2956, COG2956, Predicted N-acetylglucosaminyl t	1e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	2e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-04
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	3e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	4e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	7e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	9e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.001
PRK11189	296	PRK11189, PRK11189, lipoprotein NlpI; Provisional	0.001
PRK11788	389	PRK11788, PRK11788, tetratricopeptide repeat prote	0.001
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.002
PRK11447	1157	PRK11447, PRK11447, cellulose synthase subunit Bcs	0.002
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	0.002
COG4785	297	COG4785, NlpI, Lipoprotein NlpI, contains TPR repe	0.002
PRK02603	172	PRK02603, PRK02603, photosystem I assembly protein	0.002
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	0.003
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	0.003

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 77.4 bits (191), Expect = 3e-18
 Identities = 32/95 (33%), Positives = 56/95 (58%)

Query: 146 LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP 205
           LG LY     YD+A+E ++ AL+L P +   +  L A      +  +A+  Y++AL+L P
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65

Query: 206 NYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           +  +A+ N+G++Y   G YEE++  Y +AL ++P 
Sbjct: 66  DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 57.8 bits (140), Expect = 6e-11
 Identities = 23/83 (27%), Positives = 41/83 (49%)

Query: 176 LWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL 235
               LG          +A+  Y++AL+L P+   A+ N+  +Y   G YEE++  Y +AL
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 236 AMNPKADNAWQYLRISLRYAGRY 258
            ++P    A+  L ++    G+Y
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKY 84

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 54.7 bits (132), Expect = 6e-10
 Identities = 24/85 (28%), Positives = 46/85 (54%)

Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
           Y +    + +A  + P++AD +  L   Y    +Y++A+E ++ AL+L P +   +  LG
Sbjct: 16  YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLG 75

Query: 182 ATQANSVQSADAILAYQRALDLKPN 206
                  +  +A+ AY++AL+L PN
Sbjct: 76  LAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 1/109 (0%)

Query: 136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL 195
            P+D ++    G     +  + +A+   + A +L P D+  WN LGA      +  +A  
Sbjct: 96  YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARR 155

Query: 196 AYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244
           AY++AL+L PN      N+G+S   +G  E++    + A  ++P AD+ 
Sbjct: 156 AYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA-YLSPAADSR 203

Length = 257

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 35/226 (15%)

Query: 17  LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE 76
             R G + EA+  L   +  +P++     LLG A+    D ++A   + +A E +P N  
Sbjct: 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAA 398

Query: 77  VLLSLGVSH--TNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAAR 134
               LG+S     +  +A A                                     AA+
Sbjct: 399 ARTQLGISKLSQGDPSEAIAD---------------------------------LETAAQ 425

Query: 135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI 194
           + PE     ++L + Y  S Q+DKA+ + +   K +P + SL N LGA        A A 
Sbjct: 426 LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAR 485

Query: 195 LAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
            A+++AL ++P++  A AN+      +G  +++++ + + L ++PK
Sbjct: 486 EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 24/94 (25%), Positives = 43/94 (45%)

Query: 155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM 214
           QYD+A++  Q  +  +P +       G     + ++ +AI   ++AL L PN      N+
Sbjct: 321 QYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380

Query: 215 GISYANQGMYEESVRYYVRALAMNPKADNAWQYL 248
             +    G  +E++R   R L  +P+  N W  L
Sbjct: 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLL 414

Length = 484

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 33/222 (14%)

Query: 36  KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL 95
           ++P+ + G+ L G  +    D   AI A  +A +  P++   +  L  +       A A+
Sbjct: 698 QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAV 756

Query: 96  KYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ 155
           K L  WL+ HP                                DA +   L  LY   + 
Sbjct: 757 KTLEAWLKTHPN-------------------------------DAVLRTALAELYLAQKD 785

Query: 156 YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG 215
           YDKAI+ +QT +K  P +  + N L        +   A+   +RAL L PN       +G
Sbjct: 786 YDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLAPNIPAILDTLG 844

Query: 216 ISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257
                +G  + ++    +A+ + P+A     +L ++L   GR
Sbjct: 845 WLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 21/97 (21%), Positives = 44/97 (45%)

Query: 11  LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA 70
           L  G   ++ G   EA+   E  +  +P+N++ +  L  A+ +    ++A+    +A E 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 71  EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPK 107
           +P N +   +LG+++    +   AL+     L   P 
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 50/226 (22%), Positives = 85/226 (37%), Gaps = 7/226 (3%)

Query: 19  RKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVL 78
           R G   +A+ A +    K P+N+    LLG  +    D  +A  A  +A   EP      
Sbjct: 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502

Query: 79  LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYY-----ADVARLFVEAA 133
            +L      E     A++     L   PK   +        LY       +      +AA
Sbjct: 503 ANLARIDIQEGNPDDAIQRFEKVLTIDPKN--LRAILALAGLYLRTGNEEEAVAWLEKAA 560

Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
            ++P++ +  + L   Y    Q  KA+     A    P     W  LG  Q  +     A
Sbjct: 561 ELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKA 620

Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
           + ++++ L L+P+   A   +  +YA    Y +++    RAL + P
Sbjct: 621 VSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 19/139 (13%)

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQR 199
           A + + L + Y      + A E+   AL+  P DY  +  L        +   A  +++R
Sbjct: 31  AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90

Query: 200 ALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMN-------------------PK 240
           AL L PN      N G     QG YE++++ + +A+                        
Sbjct: 91  ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150

Query: 241 ADNAWQYLRISLRYAGRYP 259
            D A +YL  +L+   + P
Sbjct: 151 FDKAEKYLTRALQIDPQRP 169

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANS-VQSADAILA 196
           ++A+    LG        YD+AIE+++ AL+L P +   +  L            +A+  
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 197 YQRALDLKP 205
            ++AL+L P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
           P+D   ++ L + Y    + +KA +SF+ AL L P +  + N  G       +   A+  
Sbjct: 62  PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQ 121

Query: 197 YQRALDLKPNYV---RAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           +++A++  P Y    R+  N G+     G ++++ +Y  RAL ++P+
Sbjct: 122 FEQAIED-PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 172 QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG-MYEESVRY 230
            +      LG          +AI AY++AL+L P+   A+ N+ ++Y   G  YEE++  
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 231 YVRALAMNP 239
             +AL ++P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS 190
           +A    P     H+V    Y    + D A ES++ AL L P +  + N  GA      + 
Sbjct: 60  KALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119

Query: 191 ADAILAYQRALDLKPNY---VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY 247
            +A+  ++RAL   P Y        N+G+     G ++++  Y  RAL ++P+   A   
Sbjct: 120 EEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE 178

Query: 248 LRISLRYAGRY 258
           L      AG Y
Sbjct: 179 LARLHYKAGDY 189

Length = 250

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 50/228 (21%), Positives = 84/228 (36%), Gaps = 31/228 (13%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G+     G   +A   L      +PEN+     LGI+     D  +AIA +  A + +P 
Sbjct: 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA 133
                L L +S+    +   AL       +                              
Sbjct: 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ---------------------------- 461

Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
              P++A +H +LG +Y       KA E+F+ AL ++P  +     L           DA
Sbjct: 462 ---PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA 518

Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA 241
           I  +++ L + P  +RA   +   Y   G  EE+V +  +A  +NP+ 
Sbjct: 519 IQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQE 566

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 52/246 (21%), Positives = 96/246 (39%), Gaps = 10/246 (4%)

Query: 20  KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLL 79
           +G   +A+   E  +  +P+N      L   +    ++++A+A + +A E  P  +E  L
Sbjct: 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571

Query: 80  SLGVSH--TNELEQA-AALKYLYGWLRHHPKYGTI---APPELSDSLYYADVARLFVEAA 133
           +L   +    +L++A A L          P+   +   A     D          F +  
Sbjct: 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL---NKAVSSFKKLL 628

Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
            + P+ A   ++L   Y + + Y KAI S + AL+LKP +      L      + ++  A
Sbjct: 629 ALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESA 688

Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLR 253
               +      P     +   G  Y  Q  Y  +++ Y +AL   P + NA   L  +L 
Sbjct: 689 KKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALL 747

Query: 254 YAGRYP 259
            +G   
Sbjct: 748 ASGNTA 753

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 18/129 (13%)

Query: 132 AARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSL--WNKLGATQANS-- 187
           A R +P+D++    LG  Y+      +A+  F+ AL L P   +   W  L   + N   
Sbjct: 295 AVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL--LKVNRYW 352

Query: 188 --VQSADAILA----------YQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL 235
             +Q  DA L           YQ+A  +      A   +G     +  Y  + RYY +AL
Sbjct: 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412

Query: 236 AMNPKADNA 244
            M+P   NA
Sbjct: 413 RMDPGNTNA 421

Length = 1157

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI 194
            +PED  +  +   LY L    D ++   Q +    P+D  L    G  Q  +    +A+
Sbjct: 62  RNPEDLSIAKLATALY-LRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAV 120

Query: 195 LAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA------WQYL 248
              ++A  L P    AW  +G +    G ++E+ R Y +AL + P   +          L
Sbjct: 121 SVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL 180

Query: 249 RISLRYAGRY 258
           R  L  A   
Sbjct: 181 RGDLEDAETL 190

Length = 257

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 31/131 (23%)

Query: 42  EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGW 101
           E    LG  + +  D  +A+    +A E +P N +   +L  ++    +   AL+     
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALED---- 56

Query: 102 LRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE 161
                                      + +A  + P++A  +  LG+ Y    +Y++A+E
Sbjct: 57  ---------------------------YEKALELDPDNAKAYYNLGLAYYKLGKYEEALE 89

Query: 162 SFQTALKLKPQ 172
           +++ AL+L P 
Sbjct: 90  AYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 56/235 (23%), Positives = 92/235 (39%), Gaps = 11/235 (4%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPEN-SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP 72
           G     KG L++A  A E  +   P+       L  I   E + D  AI    +    +P
Sbjct: 472 GAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD-AIQRFEKVLTIDP 530

Query: 73  TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARL---- 128
            NL  +L+L   +     +  A+ +L      +P+      P L+ + YY    +L    
Sbjct: 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE---PALALAQYYLGKGQLKKAL 587

Query: 129 --FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN 186
               EAA  +P+  +  ++LG     +   +KA+ SF+  L L+P        L    A 
Sbjct: 588 AILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAV 647

Query: 187 SVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA 241
               A AI + +RAL+LKP+   A   +          E + +        +PKA
Sbjct: 648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA 702

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 12/186 (6%)

Query: 81  LGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARL------FVEAAR 134
           L + +  + +   A + L   L H P         L+ +LYY  +  L      F  A  
Sbjct: 37  LALGYLEQGDLEVAKENLDKALEHDPDD---YLAYLALALYYQQLGELEKAEDSFRRALT 93

Query: 135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK--LKPQDYSLWNKLGATQANSVQSAD 192
           ++P + DV    G       +Y++A++ F+ A++  L PQ        G     +     
Sbjct: 94  LNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153

Query: 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM-NPKADNAWQYLRIS 251
           A     RAL + P    +   +   Y  +G Y+++  Y  R     N  A++ W  +RI+
Sbjct: 154 AEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIA 213

Query: 252 LRYAGR 257
                 
Sbjct: 214 RALGDV 219

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 208 VRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
            +A  N+G +Y   G Y+E++ YY +AL +NP 
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 145 VLGVLYNLSRQYDKAIESFQTALKLKPQDYSL-----WNKLGATQANSVQSADAILAYQR 199
            L  +Y  +R+++KAI+  +  +KL  Q Y +     + +L      S     A    ++
Sbjct: 146 QLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205

Query: 200 ALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
           AL      VRA   +G     +G Y+++V    R L  NP
Sbjct: 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP 245

Length = 389

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 48/252 (19%), Positives = 86/252 (34%), Gaps = 38/252 (15%)

Query: 11  LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE- 69
           ++  +   +K     A++ L+  + K+P ++E   LLG  +    D   A   + +A   
Sbjct: 26  IEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSL 85

Query: 70  -AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARL 128
                 +  LL+       + +Q                        L D          
Sbjct: 86  GYPKNQVLPLLARAYLLQGKFQQVLDE--------------LPGKTLLDD---------- 121

Query: 129 FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQ--AN 186
                      A++  + G+ Y    Q + A +S++ AL + P+  SL+ KLG  Q    
Sbjct: 122 --------EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR--SLYAKLGLAQLALA 171

Query: 187 SVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246
             +  +A       L   P  V A    G    + G  E ++  Y +A+A+ P       
Sbjct: 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLL 231

Query: 247 YLRISLRYAGRY 258
            L   L  AG +
Sbjct: 232 ALATILIEAGEF 243

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 208 VRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
             A  N+G +Y   G Y+E++ YY +AL ++P 
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 27/104 (25%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
           P+ A     L ++      YD+A+E  + AL+L                           
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALEL--------------------------- 34

Query: 197 YQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
            +   +  P   RA  N+   Y   G Y+E++ Y  +ALA+   
Sbjct: 35  ARELGEDHPETARALNNLARLYLALGDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 35/151 (23%), Positives = 52/151 (34%), Gaps = 28/151 (18%)

Query: 23  LSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLG 82
           +   +  LE  + +NP ++EGW LLG A+        A+ A   A      N E+LL L 
Sbjct: 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGL- 196

Query: 83  VSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADV 142
                    A AL Y                   +     A    L  +A  + P +   
Sbjct: 197 ---------AEALYY------------------QAGQQMTAKARALLRQALALDPANIRA 229

Query: 143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173
             +L         Y +A  ++Q  L L P D
Sbjct: 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260

Length = 287

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 36.6 bits (86), Expect = 4e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173
           A     LG  Y    +YD+A+E ++ AL+L P +
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 45/224 (20%), Positives = 80/224 (35%), Gaps = 17/224 (7%)

Query: 31  EAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVS--HTNE 88
              +L +   +E   L G+A+      + A  +  +A   +P +L   L L       N 
Sbjct: 115 GKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENR 174

Query: 89  LEQAAAL--KYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVL 146
            ++A AL  + L     +           LS       +A  + +A  + P +  V + L
Sbjct: 175 FDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALA-AYRKAIALRPNNIAVLLAL 233

Query: 147 GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSV------QSADAILAYQRA 200
             +   + ++++A +     LK  P      N   A    ++         DA    Q A
Sbjct: 234 ATILIEAGEFEEAEKHADALLKKAP------NSPLAHYLKALVDFQKKNYEDARETLQDA 287

Query: 201 LDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244
           L   P Y+ A    G S    G  E++ +Y  + L   P +  A
Sbjct: 288 LKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 1/114 (0%)

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ-DYSLWNKLGATQANSVQ 189
           E      E A+  + LG L     +Y++A+E  + ALKL P  D      LG       +
Sbjct: 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217

Query: 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243
             +A+  Y++AL+L P+   A  N+ +     G YEE++    +AL ++P   N
Sbjct: 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYN 271

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.8 bits (91), Expect = 9e-04
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)

Query: 122 YADVARLFVEAARMSPEDADVHIVLG-VLYNLSRQYDKAIESFQTALKLKPQDYSL---W 177
           Y +   L  +A  + P+      +L          Y++A+E ++ AL+L P+   L    
Sbjct: 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170

Query: 178 NKLGATQANSVQSADAILAYQRALDLKPN-YVRAWANMGISYANQGMYEESVRYYVRALA 236
             LGA      +  +A+   ++AL L P+    A  N+G+ Y   G YEE++ YY +AL 
Sbjct: 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230

Query: 237 MNPKADNAWQYLRISLRYAGRY 258
           ++P    A   L + L   GRY
Sbjct: 231 LDPDNAEALYNLALLLLELGRY 252

Length = 291

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 35.1 bits (82), Expect = 0.001
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173
           A+    LG  Y     YD+A+E ++ AL+L P +
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 116 LSDSLYYADVARL-FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ-D 173
           L DSL    +AR  F +A  + P+ AD +  LG+    +  +D A E+F + L+L P  +
Sbjct: 73  LYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 132

Query: 174 YSLWN 178
           Y+  N
Sbjct: 133 YAYLN 137

Length = 296

>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 148 VLYNLSRQYDKAIESFQTALKLKPQDYS-----LWNKLGATQANSVQSADAILAYQRALD 202
            +Y   + + KAI+  +   KL            + +L            A    ++AL 
Sbjct: 149 EIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA 208

Query: 203 LKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
             P  VRA   +G     QG Y  ++    R    +P
Sbjct: 209 ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245

Length = 389

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 41/201 (20%), Positives = 81/201 (40%), Gaps = 17/201 (8%)

Query: 58  QQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAA----ALKYLYGWLRHHPKYGTIAP 113
           Q A AA+  A    P +L +           L        +L  L      +PK   +  
Sbjct: 50  QGAAAALGAAVLRNPEDLSIAKL-----ATALYLRGDADSSLAVLQKSAIAYPKDRELLA 104

Query: 114 PELSDSLY---YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK 170
            +  + +    + +   +  +AAR++P D +   +LG   +   ++D+A  +++ AL+L 
Sbjct: 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA 164

Query: 171 PQDYSLWNKLGATQA--NSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESV 228
           P + S+ N LG +      ++ A+ +L          + VR   N+ +    QG + E+ 
Sbjct: 165 PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVR--QNLALVVGLQGDFREA- 221

Query: 229 RYYVRALAMNPKADNAWQYLR 249
                   ++ +A N    LR
Sbjct: 222 EDIAVQELLSEQAANNVAALR 242

Length = 257

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 50/228 (21%), Positives = 81/228 (35%), Gaps = 31/228 (13%)

Query: 17  LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE 76
           L   G   EA    +A + K P +     L  +   +  + + A   +  A ++ P  L 
Sbjct: 237 LIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLP 296

Query: 77  VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMS 136
            LL  G S         A +YL   L++ P                        +A R+ 
Sbjct: 297 ALLLAGASEYQLGNLEQAYQYLNQILKYAPN---------------------SHQARRLL 335

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
              A + + LG       + D+AI +   AL L P D +  + LG           A   
Sbjct: 336 ---ASIQLRLG-------RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEY 385

Query: 197 YQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244
             +A +L P    A   +GIS  +QG   E++     A  ++P+   A
Sbjct: 386 LAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAE-NDDDQQAIAAMMRAHEAE 71
           G  LF+ G   EA+ A E  +  +P+N+E +  L +A+ +   D ++A+  + +A E +
Sbjct: 9  LGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELD 68

Query: 72 P 72
          P
Sbjct: 69 P 69

Length = 69

>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           G    +S Q   AI   Q+A+   P    A   +G +Y+ QG    +V  + +ALA++P 
Sbjct: 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335

Query: 241 ADNA--WQYLRISLRY 254
           + N   W+ L    RY
Sbjct: 336 SSNRDKWESLLKVNRY 351

Length = 1157

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT---QANSVQSADA 193
           P DA+   +LG  Y    +   A+ +++ AL+L   +  +   L      QA    +A A
Sbjct: 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKA 212

Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLR 253
               ++AL L P  +RA + +  +   QG Y E+   +   L + P  D     +  S+ 
Sbjct: 213 RALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272

Length = 287

>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only]

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 116 LSDSLYYADVARL-FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ-D 173
           L DSL    +AR  F +A  + P+  +V   LG+    +  +D A E+F + L+L P  +
Sbjct: 74  LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133

Query: 174 YSLWNK 179
           Y+  N+
Sbjct: 134 YAHLNR 139

Length = 297

>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 19/102 (18%)

Query: 156 YDKAIESFQTALKLK--PQD--YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW 211
           Y +A+E+++ ALKL+  P D  Y L+N +G   A++ +   A+  Y +AL+L P    A 
Sbjct: 51  YAEALENYEEALKLEEDPNDRSYILYN-MGIIYASNGEHDKALEYYHQALELNPKQPSAL 109

Query: 212 ANMGISYANQG--------------MYEESVRYYVRALAMNP 239
            N+ + Y  +G              +++++  Y+ +A+ + P
Sbjct: 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151

Length = 172

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 13  EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP 72
           +G+   R G   EAV  L       P + E W LLG A  +     +A  A  +A E  P
Sbjct: 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP 165

Query: 73  TNLEVLLSLGVSH--TNELEQAAAL 95
               +  +LG+S     +LE A  L
Sbjct: 166 NEPSIANNLGMSLLLRGDLEDAETL 190

Length = 257

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 196 AYQRALDLKPNYVRAWANMGISYANQGMYEESVR 229
            Y++AL+L PN   A+ N+ +   N G Y+E+++
Sbjct: 1   LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34

Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
KOG1126	638	consensus DNA-binding cell division cycle control	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
KOG1125	579	consensus TPR repeat-containing protein [General f	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.98
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.98
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.98
KOG1126	638	consensus DNA-binding cell division cycle control	99.97
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.97
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.97
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.97
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.96
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.96
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.96
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.96
PRK12370	553	invasion protein regulator; Provisional	99.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.95
KOG1129	478	consensus TPR repeat-containing protein [General f	99.95
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.95
KOG2076	895	consensus RNA polymerase III transcription factor	99.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.94
PRK11189	296	lipoprotein NlpI; Provisional	99.94
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.94
PRK12370	553	invasion protein regulator; Provisional	99.94
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.94
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.94
PRK11189	296	lipoprotein NlpI; Provisional	99.94
KOG1129	478	consensus TPR repeat-containing protein [General f	99.93
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.93
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.93
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.93
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.92
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.92
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.92
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.91
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.91
PLN02789	320	farnesyltranstransferase	99.91
KOG1125	579	consensus TPR repeat-containing protein [General f	99.91
PLN02789	320	farnesyltranstransferase	99.91
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.91
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.9
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.9
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.9
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.9
KOG2003	840	consensus TPR repeat-containing protein [General f	99.9
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.9
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.89
KOG2076	895	consensus RNA polymerase III transcription factor	99.89
KOG2003	840	consensus TPR repeat-containing protein [General f	99.89
PRK14574	822	hmsH outer membrane protein; Provisional	99.89
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.88
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.88
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.88
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.87
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.87
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.87
PRK14574	822	hmsH outer membrane protein; Provisional	99.86
PRK15359	144	type III secretion system chaperone protein SscB;	99.86
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.86
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.85
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.84
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.84
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.83
PLN03218	1060	maturation of RBCL 1; Provisional	99.82
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.82
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.82
PLN03218	1060	maturation of RBCL 1; Provisional	99.81
PRK15359	144	type III secretion system chaperone protein SscB;	99.81
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.8
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.79
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.79
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.78
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.78
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.78
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.77
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.77
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.77
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.76
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.76
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.75
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.75
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.75
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.74
KOG0553	304	consensus TPR repeat-containing protein [General f	99.74
PLN03077	857	Protein ECB2; Provisional	99.73
PLN03077	857	Protein ECB2; Provisional	99.73
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.73
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.72
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.72
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.71
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.71
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.7
KOG0553	304	consensus TPR repeat-containing protein [General f	99.69
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.69
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.69
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.68
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.67
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.67
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.66
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.66
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.66
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.64
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.64
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.62
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.62
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.6
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.58
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.57
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.57
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.56
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.55
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.54
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.54
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.53
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.53
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.52
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.52
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.5
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.5
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.5
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.49
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.49
PRK04841	903	transcriptional regulator MalT; Provisional	99.49
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.49
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.49
PRK15331	165	chaperone protein SicA; Provisional	99.48
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.47
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.47
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.47
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	99.46
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.46
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.44
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.44
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.43
PRK11906	458	transcriptional regulator; Provisional	99.43
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.43
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.43
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.43
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.43
PRK11906	458	transcriptional regulator; Provisional	99.42
PRK04841	903	transcriptional regulator MalT; Provisional	99.41
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.41
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.4
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.4
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.4
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.39
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.39
PRK10803	263	tol-pal system protein YbgF; Provisional	99.38
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.38
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.36
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.35
PRK10803	263	tol-pal system protein YbgF; Provisional	99.34
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.32
PRK15331	165	chaperone protein SicA; Provisional	99.31
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.29
PF13512	142	TPR_18: Tetratricopeptide repeat	99.29
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.29
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.29
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.29
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.28
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.27
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.27
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.27
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.22
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.21
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.2
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.2
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.2
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.2
PF13371	73	TPR_9: Tetratricopeptide repeat	99.19
KOG4234	271	consensus TPR repeat-containing protein [General f	99.17
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	99.17
PF13371	73	TPR_9: Tetratricopeptide repeat	99.17
PF12688	120	TPR_5: Tetratrico peptide repeat	99.16
PF12688	120	TPR_5: Tetratrico peptide repeat	99.16
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.12
COG4700	251	Uncharacterized protein conserved in bacteria cont	99.11
COG3898	531	Uncharacterized membrane-bound protein [Function u	99.11
PF13512	142	TPR_18: Tetratricopeptide repeat	99.1
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.07
KOG4234	271	consensus TPR repeat-containing protein [General f	99.05
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.03
COG4700	251	Uncharacterized protein conserved in bacteria cont	99.01
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.0
KOG1586	288	consensus Protein required for fusion of vesicles	98.97
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.94
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.94
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.93
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.93
KOG4555	175	consensus TPR repeat-containing protein [Function	98.92
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.87
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.85
KOG4555	175	consensus TPR repeat-containing protein [Function	98.84
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.84
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.83
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.8
KOG2471	696	consensus TPR repeat-containing protein [General f	98.78
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.77
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.77
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.77
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.77
PF13428	44	TPR_14: Tetratricopeptide repeat	98.72
KOG2471	696	consensus TPR repeat-containing protein [General f	98.71
PF13428	44	TPR_14: Tetratricopeptide repeat	98.7
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.69
KOG1585	308	consensus Protein required for fusion of vesicles	98.68
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.68
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.64
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.63
KOG1585	308	consensus Protein required for fusion of vesicles	98.6
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.58
PF13431	34	TPR_17: Tetratricopeptide repeat	98.56
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.56
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.55
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.54
KOG1586	288	consensus Protein required for fusion of vesicles	98.52
PF13431	34	TPR_17: Tetratricopeptide repeat	98.52
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.49
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.49
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.49
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.45
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.45
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.43
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	98.39
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.39
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.38
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.35
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.34
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.33
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.33
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.32
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	98.32
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.31
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.26
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	98.22
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.21
KOG1550	552	consensus Extracellular protein SEL-1 and related	98.18
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.17
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.16
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.14
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.14
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.13
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.13
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.11
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.1
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	98.06
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.0
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	98.0
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.0
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.97
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.97
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.91
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.9
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.89
KOG1258	577	consensus mRNA processing protein [RNA processing	97.89
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.88
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.88
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.8
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.78
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.77
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.77
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.75
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.72
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.71
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.7
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.7
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.67
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.67
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.66
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.66
PRK10941	269	hypothetical protein; Provisional	97.66
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.66
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.57
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.54
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.54
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.53
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.51
PRK10941	269	hypothetical protein; Provisional	97.5
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.5
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.49
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.48
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.47
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.47
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.45
KOG1258	577	consensus mRNA processing protein [RNA processing	97.44
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.43
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.38
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.35
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	97.32
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.32
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	97.3
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.29
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.28
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.27
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	97.25
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	97.22
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.18
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.18
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.16
COG5191	435	Uncharacterized conserved protein, contains HAT (H	97.12
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.1
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.09
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.07
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.05
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.04
KOG3783	546	consensus Uncharacterized conserved protein [Funct	97.03
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.01
KOG3364	149	consensus Membrane protein involved in organellar	96.98
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.97
KOG1310	758	consensus WD40 repeat protein [General function pr	96.96
KOG0529	421	consensus Protein geranylgeranyltransferase type I	96.95
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.94
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	96.9
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.88
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.87
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.83
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	96.82
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.82
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.81
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.81
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.78
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.71
KOG1310	758	consensus WD40 repeat protein [General function pr	96.68
KOG3364	149	consensus Membrane protein involved in organellar	96.68
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.59
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.53
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.42
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.35
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	96.31
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	96.24
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	96.21
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.17
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.16
COG2912	269	Uncharacterized conserved protein [Function unknow	96.12
KOG2581	493	consensus 26S proteasome regulatory complex, subun	96.11
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.09
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.94
COG2912	269	Uncharacterized conserved protein [Function unknow	95.89
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.85
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.78
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.78
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.77
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.74
KOG1463	411	consensus 26S proteasome regulatory complex, subun	95.74
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.7
KOG2422	665	consensus Uncharacterized conserved protein [Funct	95.67
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.61
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.57
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.56
COG1747	711	Uncharacterized N-terminal domain of the transcrip	95.55
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	95.49
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.47
COG5159	421	RPN6 26S proteasome regulatory complex component [	95.34
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.28
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	95.18
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.01
PRK11619	644	lytic murein transglycosylase; Provisional	94.92
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.89
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.85
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.83
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.65
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.56
COG3947	361	Response regulator containing CheY-like receiver a	94.41
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	94.27
COG3947	361	Response regulator containing CheY-like receiver a	93.71
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	93.69
COG4455	273	ImpE Protein of avirulence locus involved in tempe	93.68
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	93.66
COG5187	412	RPN7 26S proteasome regulatory complex component,	93.48
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.4
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	93.23
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	93.2
COG4941	415	Predicted RNA polymerase sigma factor containing a	92.89
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	92.8
PF12854	34	PPR_1: PPR repeat	92.78
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	92.62
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	92.42
PF12854	34	PPR_1: PPR repeat	92.32
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	92.31
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.15
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	92.0
KOG2422	665	consensus Uncharacterized conserved protein [Funct	91.81
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	91.79
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	91.77
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	91.36
PF13041	50	PPR_2: PPR repeat family	91.3
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	91.2
smart00299	140	CLH Clathrin heavy chain repeat homology.	90.72
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.58
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	90.53
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	90.41
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	90.36
PF13041	50	PPR_2: PPR repeat family	90.36
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	90.32
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	90.29
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	89.74
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	89.72
KOG1463	411	consensus 26S proteasome regulatory complex, subun	89.44
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.34
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	88.98
COG5159	421	RPN6 26S proteasome regulatory complex component [	88.74
KOG4014	248	consensus Uncharacterized conserved protein (conta	88.52
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	88.5
COG4941	415	Predicted RNA polymerase sigma factor containing a	88.38
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	88.33
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.27
smart00299	140	CLH Clathrin heavy chain repeat homology.	88.21
PHA02537	230	M terminase endonuclease subunit; Provisional	87.52
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	86.8
PRK11619	644	lytic murein transglycosylase; Provisional	86.7
KOG2062	929	consensus 26S proteasome regulatory complex, subun	86.7
KOG2581	493	consensus 26S proteasome regulatory complex, subun	86.54
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	86.42
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	85.92
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	85.89
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	85.85
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	85.82
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	85.81
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	85.31
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	85.18
COG1747	711	Uncharacterized N-terminal domain of the transcrip	85.13
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	84.74
COG4455	273	ImpE Protein of avirulence locus involved in tempe	84.34
KOG0687	393	consensus 26S proteasome regulatory complex, subun	83.89
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	83.66
PF13812	34	PPR_3: Pentatricopeptide repeat domain	82.36
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	82.29
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	82.05
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	81.31
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	81.26
PHA02537	230	M terminase endonuclease subunit; Provisional	80.79
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	80.71
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	80.68

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1e-40  Score=256.59  Aligned_cols=257  Identities=22%  Similarity=0.276  Sum_probs=232.2

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      .|-.+|..+..+|+...|+..|+++++++|...++++++|.+|...+.+++|+.+|.+++...|++..++.++|.+|+.+
T Consensus       220 awsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq  299 (966)
T KOG4626|consen  220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ  299 (966)
T ss_pred             eehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecc
Confidence            46678888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT  165 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  165 (265)
                      |..+-|+..|++++++.|..+..+   +..+...|+..+|..+|.+++.+.|+.+++..++|.++...|.+++|...|.+
T Consensus       300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~  379 (966)
T KOG4626|consen  300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK  379 (966)
T ss_pred             ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            999999999999999999988887   78888889999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhH
Q 024618          166 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW  245 (265)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  245 (265)
                      +++..|....++.++|.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+...|+.+|.+++..+|...+++
T Consensus       380 al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAh  459 (966)
T KOG4626|consen  380 ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAH  459 (966)
T ss_pred             HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCcccccccC
Q 024618          246 QYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       246 ~~l~~~~~~~~~~~~A~~~~  265 (265)
                      .+||.+|...|+..+|+..|
T Consensus       460 sNLasi~kDsGni~~AI~sY  479 (966)
T KOG4626|consen  460 SNLASIYKDSGNIPEAIQSY  479 (966)
T ss_pred             hhHHHHhhccCCcHHHHHHH
Confidence            99999999999998888654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-39  Score=247.47  Aligned_cols=255  Identities=19%  Similarity=0.227  Sum_probs=246.2

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE   90 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   90 (265)
                      -..|..+-..|+..+|..+|.++++..|....+|..+|-++...|+...|+..|+++++++|+.++++++||.+|...+.
T Consensus       188 s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~  267 (966)
T KOG4626|consen  188 SDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARI  267 (966)
T ss_pred             cchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhc
Confidence            45688888899999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618           91 QAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL  167 (265)
Q Consensus        91 ~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  167 (265)
                      ++.|+.+|.+++...|+.....   +.+|..+|..+-|+..|+++++..|+.++++.++|..+...|+..+|..+|.+++
T Consensus       268 ~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL  347 (966)
T KOG4626|consen  268 FDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL  347 (966)
T ss_pred             chHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence            9999999999999999998887   8899999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618          168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY  247 (265)
Q Consensus       168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  247 (265)
                      .+.|+.+++..++|.++..+|.+++|...|.++++..|..+.++.++|.+|.++|++++|+.+|+.++.+.|...+++.+
T Consensus       348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N  427 (966)
T KOG4626|consen  348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN  427 (966)
T ss_pred             HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcccccccC
Q 024618          248 LRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       248 l~~~~~~~~~~~~A~~~~  265 (265)
                      +|..|..+|+...|+.+|
T Consensus       428 mGnt~ke~g~v~~A~q~y  445 (966)
T KOG4626|consen  428 MGNTYKEMGDVSAAIQCY  445 (966)
T ss_pred             cchHHHHhhhHHHHHHHH
Confidence            999999999999988654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=4.4e-34  Score=236.02  Aligned_cols=254  Identities=17%  Similarity=0.156  Sum_probs=194.4

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      +..+|..++..|+|++|+..|++++...|+ +..+.++|.+|..+|++++|+..+.++++++|++..++..+|.++..+|
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg  208 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG  208 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence            346799999999999999999999999995 7789999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhc------------------------------CCCC-------------------------------
Q 024618           90 EQAAALKYLYGWLRH------------------------------HPKY-------------------------------  108 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~------------------------------~~~~-------------------------------  108 (265)
                      ++++|+..+..+...                              .|..                               
T Consensus       209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (615)
T TIGR00990       209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE  288 (615)
T ss_pred             CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence            999998765433211                              1110                               


Q ss_pred             ------------------------------------------CCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHH
Q 024618          109 ------------------------------------------GTIA---PPELSDSLYYADVARLFVEAARMSPEDADVH  143 (265)
Q Consensus       109 ------------------------------------------~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  143 (265)
                                                                ...+   +.++...|++++|+..+++++..+|.....+
T Consensus       289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~  368 (615)
T TIGR00990       289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSY  368 (615)
T ss_pred             ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence                                                      0000   3344456667777777777777777777777


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCC
Q 024618          144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM  223 (265)
Q Consensus       144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  223 (265)
                      ..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|.++..+|+
T Consensus       369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~  448 (615)
T TIGR00990       369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS  448 (615)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          224 YEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       224 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      +++|+..|+++++..|+++.++..+|.++...|++++|++.
T Consensus       449 ~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~  489 (615)
T TIGR00990       449 IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEK  489 (615)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHH
Confidence            77777777777777777777777777777777777777654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.1e-32  Score=227.80  Aligned_cols=246  Identities=16%  Similarity=0.166  Sum_probs=226.5

Q ss_pred             cCChHHHHHHHHHHHHhC---CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHH
Q 024618           20 KGLLSEAVLALEAEVLKN---PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALK   96 (265)
Q Consensus        20 ~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~   96 (265)
                      .++|++|+..|++++...   |....++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~  386 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE  386 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            468999999999999864   67778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024618           97 YLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD  173 (265)
Q Consensus        97 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  173 (265)
                      .++++++.+|+++..+   |.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++..|++
T Consensus       387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~  466 (615)
T TIGR00990       387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA  466 (615)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999988777   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH------HHHHHH-HHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618          174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW------ANMGIS-YANQGMYEESVRYYVRALAMNPKADNAWQ  246 (265)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  246 (265)
                      +.++..+|.++...|++++|+..|++++.+.|.....+      ...+.. +...|++++|+..++++++++|++..++.
T Consensus       467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~  546 (615)
T TIGR00990       467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA  546 (615)
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            99999999999999999999999999999988753322      233333 34479999999999999999999999999


Q ss_pred             HHHHHHHHhCCcccccccC
Q 024618          247 YLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       247 ~l~~~~~~~~~~~~A~~~~  265 (265)
                      .+|.++..+|++++|+..|
T Consensus       547 ~la~~~~~~g~~~eAi~~~  565 (615)
T TIGR00990       547 TMAQLLLQQGDVDEALKLF  565 (615)
T ss_pred             HHHHHHHHccCHHHHHHHH
Confidence            9999999999999998754

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=2.7e-32  Score=225.17  Aligned_cols=256  Identities=14%  Similarity=0.074  Sum_probs=181.3

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      .+..+|......|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..++.++...
T Consensus        78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~  157 (656)
T PRK15174         78 LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLM  157 (656)
T ss_pred             HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            34556677777778888888888877777777777777777777778888888888888777777777777777777777


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCc-------------------------------------hhhhhhhhchHHHHHHHHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIA-------------------------------------PPELSDSLYYADVARLFVE  131 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~~~~~  131 (265)
                      |++++|+..+.+++...|+....+                                     +..+...|++++|+..+++
T Consensus       158 g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~  237 (656)
T PRK15174        158 DKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGES  237 (656)
T ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            777777777777766666544322                                     2344455666666666666


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618          132 AARMSPEDADVHIVLGVLYNLSRQYDK----AIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY  207 (265)
Q Consensus       132 ~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  207 (265)
                      ++..+|+++.++..+|.++...|++++    |+..++++++.+|+++.++..+|.++...|++++|+..+++++..+|++
T Consensus       238 al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~  317 (656)
T PRK15174        238 ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL  317 (656)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            666667667777777777777777664    6677777777777777777777777777777777777777777777777


Q ss_pred             hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          208 VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       208 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      +.++..+|.++...|++++|+..|++++..+|++...+..++.++...|++++|+..
T Consensus       318 ~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~  374 (656)
T PRK15174        318 PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESV  374 (656)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHH
Confidence            777777777777777777777777777777776665555566667777777766654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.5e-33  Score=214.96  Aligned_cols=252  Identities=17%  Similarity=0.173  Sum_probs=223.4

Q ss_pred             hHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHh------------------------
Q 024618           14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE------------------------   69 (265)
Q Consensus        14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------   69 (265)
                      |......-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-+                        
T Consensus       326 ~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~  405 (638)
T KOG1126|consen  326 GYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA  405 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH
Confidence            44444455566667766665555555566666667777777777776666666654                        


Q ss_pred             ----------cCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcC
Q 024618           70 ----------AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMS  136 (265)
Q Consensus        70 ----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~  136 (265)
                                .+|+.|+.|..+|.||..+++++.|+++|+++++++|.+...+   |.-+.....++.|..+|++++..+
T Consensus       406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence                      3567789999999999999999999999999999999987776   899999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618          137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI  216 (265)
Q Consensus       137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  216 (265)
                      |.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+..+++|+.++|.++-..+..|.
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~  565 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS  565 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          217 SYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       217 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      +++.++++++|+..+++.-++.|+...++..+|.+|.++|+.+.|+..|
T Consensus       566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f  614 (638)
T KOG1126|consen  566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF  614 (638)
T ss_pred             HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence            9999999999999999999999999999999999999999999887654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=9e-32  Score=222.04  Aligned_cols=251  Identities=12%  Similarity=-0.011  Sum_probs=216.6

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhh------
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSL------   81 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------   81 (265)
                      ..++.+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+      
T Consensus       111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~  190 (656)
T PRK15174        111 EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNK  190 (656)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence            45678899999999999999999999999999999999999999999999999999998888887766544332      


Q ss_pred             ----------------------------hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHH----HH
Q 024618           82 ----------------------------GVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYAD----VA  126 (265)
Q Consensus        82 ----------------------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----a~  126 (265)
                                                  +.++...|++++|+..+++++...|++...+   +..+...|++++    |+
T Consensus       191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~  270 (656)
T PRK15174        191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAA  270 (656)
T ss_pred             CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence                                        3455566777778888888888887776555   888899999986    89


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618          127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN  206 (265)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  206 (265)
                      ..++++++.+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|.
T Consensus       271 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~  350 (656)
T PRK15174        271 EHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV  350 (656)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch-----hHHHHHHHHHHhCCc
Q 024618          207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN-----AWQYLRISLRYAGRY  258 (265)
Q Consensus       207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----~~~~l~~~~~~~~~~  258 (265)
                      ++..+..+|.++...|++++|+..|+++++..|++..     +...+...+...+..
T Consensus       351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~  407 (656)
T PRK15174        351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLP  407 (656)
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCc
Confidence            8877777899999999999999999999999998653     334444444444443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.9e-32  Score=206.68  Aligned_cols=261  Identities=49%  Similarity=0.791  Sum_probs=239.4

Q ss_pred             CCCCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhh
Q 024618            1 MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS   80 (265)
Q Consensus         1 ~np~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   80 (265)
                      +||+.+.++-|..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..
T Consensus       279 ~Np~~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLma  358 (579)
T KOG1125|consen  279 ENPYIDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMA  358 (579)
T ss_pred             cCcccCCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc----------hhhhhhhhchHHHHHHHHHHHhcCC--CCHHHHHHHHH
Q 024618           81 LGVSHTNELEQAAALKYLYGWLRHHPKYGTIA----------PPELSDSLYYADVARLFVEAARMSP--EDADVHIVLGV  148 (265)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~  148 (265)
                      ||.+|...|.-.+|+.++.+.+...|......          .........+..-.+.|..+....|  .++++...||.
T Consensus       359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV  438 (579)
T KOG1125|consen  359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV  438 (579)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence            99999999999999999999999888765444          1133444556677788888888888  78999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHH
Q 024618          149 LYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESV  228 (265)
Q Consensus       149 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  228 (265)
                      +|.-.|+|++|+.+|+.++...|++...|..+|-.+....+.++|+..|++|+++.|....+++++|.++..+|.|++|+
T Consensus       439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~  518 (579)
T KOG1125|consen  439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV  518 (579)
T ss_pred             HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCC----------chhHHHHHHHHHHhCCcccc
Q 024618          229 RYYVRALAMNPKA----------DNAWQYLRISLRYAGRYPNR  261 (265)
Q Consensus       229 ~~~~~a~~~~~~~----------~~~~~~l~~~~~~~~~~~~A  261 (265)
                      ++|-.++.+.+..          ..+|..|-.++..+++.+-+
T Consensus       519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence            9999999986541          25888888888888887743

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.1e-30  Score=225.67  Aligned_cols=255  Identities=22%  Similarity=0.238  Sum_probs=205.3

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC----------------
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT----------------   73 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------------   73 (265)
                      +..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..++++++.+|+                
T Consensus       604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  683 (899)
T TIGR02917       604 WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK  683 (899)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence            4455666666666666666666666666666666666666666666666666666666655555                


Q ss_pred             ------------------hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHH
Q 024618           74 ------------------NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAA  133 (265)
Q Consensus        74 ------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~  133 (265)
                                        ++..+..+|.++...|++++|+..+++++...|+.....  +.++...|++++|...+++++
T Consensus       684 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  763 (899)
T TIGR02917       684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL  763 (899)
T ss_pred             CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                              555566667777777777777777777777777663333  777788888888888888888


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHH
Q 024618          134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWAN  213 (265)
Q Consensus       134 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  213 (265)
                      +..|++..++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+..+++++...|+++..+..
T Consensus       764 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~  842 (899)
T TIGR02917       764 KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDT  842 (899)
T ss_pred             HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999 88999999999999999999999


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          214 MGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       214 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      +|.++...|++++|+.+++++++.+|.++.++..++.++...|++++|+++|
T Consensus       843 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  894 (899)
T TIGR02917       843 LGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKEL  894 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998653

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=2.7e-30  Score=226.08  Aligned_cols=252  Identities=21%  Similarity=0.183  Sum_probs=172.0

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHH--------------HH
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE--------------VL   78 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~   78 (265)
                      +|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++.+|++..              ..
T Consensus       275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~  354 (1157)
T PRK11447        275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL  354 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence            4777777888888888888888888888888888888888888888888888888877776532              11


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH-------
Q 024618           79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGV-------  148 (265)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~-------  148 (265)
                      ..+|.++...|++++|+..|+++++.+|++...+   +.++...|++++|+..|+++++.+|++..++..++.       
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~  434 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP  434 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence            2335556666666666666666666666655444   566666666666666666666666665544433332       


Q ss_pred             -----------------------------------HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHH
Q 024618          149 -----------------------------------LYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA  193 (265)
Q Consensus       149 -----------------------------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  193 (265)
                                                         ++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A  514 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA  514 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence                                               233456666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhcCCcch-----------------------------------------------------------------
Q 024618          194 ILAYQRALDLKPNYV-----------------------------------------------------------------  208 (265)
Q Consensus       194 ~~~~~~~~~~~~~~~-----------------------------------------------------------------  208 (265)
                      +..+++++...|.++                                                                 
T Consensus       515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~  594 (1157)
T PRK11447        515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA  594 (1157)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence            666666665555433                                                                 


Q ss_pred             ---------hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          209 ---------RAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       209 ---------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                               ..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|++.
T Consensus       595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~  659 (1157)
T PRK11447        595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ  659 (1157)
T ss_pred             HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence                     23445666677777888888888888888888888888888888888888777654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.98  E-value=6.6e-30  Score=220.96  Aligned_cols=256  Identities=20%  Similarity=0.215  Sum_probs=211.0

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN   87 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   87 (265)
                      ..++..+..+...|++++|+..+++++...|.++.+|..+|.++...|++++|+..++++++..|.++.++..+|.++..
T Consensus       568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  647 (899)
T TIGR02917       568 EPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAV  647 (899)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCCCCCc-------------------------------------hhhhhhhhchHHHHHHHH
Q 024618           88 ELEQAAALKYLYGWLRHHPKYGTIA-------------------------------------PPELSDSLYYADVARLFV  130 (265)
Q Consensus        88 ~~~~~~A~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~~~~  130 (265)
                      .|++++|+..++++++..|++...+                                     +.++...|++++|+..++
T Consensus       648 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  727 (899)
T TIGR02917       648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR  727 (899)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999999998854332                                     445556666666666666


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh
Q 024618          131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRA  210 (265)
Q Consensus       131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  210 (265)
                      +++...|++ ..+..++.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++..|+++.+
T Consensus       728 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  806 (899)
T TIGR02917       728 KALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV  806 (899)
T ss_pred             HHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH
Confidence            666666665 5556666777777777777777777777777777777788888888888888888888888888877777


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          211 WANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      +..+|.++...|+ .+|+.+++++++..|+++..+..+|.++...|++++|+++|
T Consensus       807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  860 (899)
T TIGR02917       807 LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLL  860 (899)
T ss_pred             HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888888888887 77888888888888888888888888888888888777643

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.98  E-value=5.8e-30  Score=224.00  Aligned_cols=253  Identities=17%  Similarity=0.112  Sum_probs=196.8

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhh-------
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVS-------   84 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~-------   84 (265)
                      ..|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.+       
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~  435 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE  435 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence            4578888999999999999999999999999999999999999999999999999999999987766555444       


Q ss_pred             -----------------------------------hhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHH
Q 024618           85 -----------------------------------HTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVA  126 (265)
Q Consensus        85 -----------------------------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~  126 (265)
                                                         +...|++++|+..++++++.+|+++...   +.++...|++++|+
T Consensus       436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~  515 (1157)
T PRK11447        436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD  515 (1157)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence                                               3456888889999999999998887665   88888889999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH----------------------------------------
Q 024618          127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA----------------------------------------  166 (265)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----------------------------------------  166 (265)
                      ..++++++..|+++..++.++..+...+++++|+..++++                                        
T Consensus       516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~  595 (1157)
T PRK11447        516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL  595 (1157)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            9999888888888777666665555555555555544331                                        


Q ss_pred             HhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618          167 LKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ  246 (265)
Q Consensus       167 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  246 (265)
                      ++..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..++++++..|+++.++.
T Consensus       596 l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~  675 (1157)
T PRK11447        596 LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR  675 (1157)
T ss_pred             HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHH
Confidence            12356666666777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHhCCccccccc
Q 024618          247 YLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       247 ~l~~~~~~~~~~~~A~~~  264 (265)
                      .+|.++...|++++|+++
T Consensus       676 ~la~~~~~~g~~~eA~~~  693 (1157)
T PRK11447        676 RVALAWAALGDTAAAQRT  693 (1157)
T ss_pred             HHHHHHHhCCCHHHHHHH
Confidence            777777777777777654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.98  E-value=1.2e-29  Score=199.85  Aligned_cols=255  Identities=16%  Similarity=0.075  Sum_probs=212.9

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh----HHHHhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN----LEVLLSLGVS   84 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~   84 (265)
                      ..+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..    ..++..+|.+
T Consensus        37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~  116 (389)
T PRK11788         37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD  116 (389)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            345678888889999999999999999999988899999999999999999999999888754322    3567888999


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHccCH
Q 024618           85 HTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDA-----DVHIVLGVLYNLSRQY  156 (265)
Q Consensus        85 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~  156 (265)
                      +...|++++|+..|+++++..|.....+   +.++...|++++|+..++++++..|.+.     ..+..+|.++...|++
T Consensus       117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  196 (389)
T PRK11788        117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL  196 (389)
T ss_pred             HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence            9999999999999999988877655444   7788888999999999999888777653     2456788888889999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618          157 DKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY-VRAWANMGISYANQGMYEESVRYYVRAL  235 (265)
Q Consensus       157 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~  235 (265)
                      ++|+..++++++..|++..++..+|.++...|++++|++.+++++..+|.+ ..++..++.++...|++++|+..+++++
T Consensus       197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  276 (389)
T PRK11788        197 DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL  276 (389)
T ss_pred             HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999998888888888899999999999999999999998887765 4567788888999999999999999998


Q ss_pred             hcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          236 AMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      +..|+... ...++.++.+.|++++|+..
T Consensus       277 ~~~p~~~~-~~~la~~~~~~g~~~~A~~~  304 (389)
T PRK11788        277 EEYPGADL-LLALAQLLEEQEGPEAAQAL  304 (389)
T ss_pred             HhCCCchH-HHHHHHHHHHhCCHHHHHHH
Confidence            88887644 47888889999988888764

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1e-30  Score=202.87  Aligned_cols=222  Identities=20%  Similarity=0.194  Sum_probs=202.7

Q ss_pred             HHHHHHHHHhh--cCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhc----------------
Q 024618           43 GWRLLGIAHAE--NDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRH----------------  104 (265)
Q Consensus        43 ~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------  104 (265)
                      .+..+|..+..  .-+..+|+..|.+.-...++...++..+|..|+.++++++|.++|+.+-+.                
T Consensus       319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW  398 (638)
T KOG1126|consen  319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW  398 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence            44455555544  446789999999977788888999999999999999999999999876544                


Q ss_pred             ------------------CCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618          105 ------------------HPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF  163 (265)
Q Consensus       105 ------------------~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  163 (265)
                                        +|+.|..|   |.++..+++++.|+++|+++++++|+...++..+|.-+....++|.|..+|
T Consensus       399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f  478 (638)
T KOG1126|consen  399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF  478 (638)
T ss_pred             HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence                              45555555   899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch
Q 024618          164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN  243 (265)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  243 (265)
                      ++++..+|.+..+|+.+|.+|.++++++.|.-+|++|++++|.+......+|.++.++|+.++|+..+++|+.++|.++-
T Consensus       479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l  558 (638)
T KOG1126|consen  479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL  558 (638)
T ss_pred             HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhCCccccccc
Q 024618          244 AWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       244 ~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      ..+..+.++..++++++|+..
T Consensus       559 ~~~~~~~il~~~~~~~eal~~  579 (638)
T KOG1126|consen  559 CKYHRASILFSLGRYVEALQE  579 (638)
T ss_pred             hHHHHHHHHHhhcchHHHHHH
Confidence            999999999999999998753

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.97  E-value=2.4e-31  Score=199.79  Aligned_cols=256  Identities=22%  Similarity=0.269  Sum_probs=124.7

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLK--NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT   86 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   86 (265)
                      ..+..|..++..|++++|+.++++.+..  .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus        10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~   88 (280)
T PF13429_consen   10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L   88 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence            4567899999999999999999776554  488899999999999999999999999999999999999998888888 7


Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCHHHHHHH
Q 024618           87 NELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMS--PEDADVHIVLGVLYNLSRQYDKAIES  162 (265)
Q Consensus        87 ~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~  162 (265)
                      ..+++++|+.+++++.+..++.....  ..++...++++++...++++....  +.++..+..+|.++.+.|++++|+..
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999887765433322  777889999999999999977655  67889999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618          163 FQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  242 (265)
                      ++++++.+|+++.+...++.++...|+++++.+.++......|+++..+..+|.++..+|++++|+.+++++++.+|+++
T Consensus       169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP  248 (280)
T ss_dssp             HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999998888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhCCcccccccC
Q 024618          243 NAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      ..+..+|.++...|+.++|.+++
T Consensus       249 ~~~~~~a~~l~~~g~~~~A~~~~  271 (280)
T PF13429_consen  249 LWLLAYADALEQAGRKDEALRLR  271 (280)
T ss_dssp             HHHHHHHHHHT------------
T ss_pred             ccccccccccccccccccccccc
Confidence            99999999999999999998763

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.97  E-value=5.3e-29  Score=210.56  Aligned_cols=254  Identities=13%  Similarity=0.026  Sum_probs=229.3

Q ss_pred             CCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618            6 GHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH   85 (265)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   85 (265)
                      ....++.+|.++.. +++++|+..+.+++...|++. ....+|.++...|++++|+..+++++...|.+ ..+..+|.++
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~al  552 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTA  552 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHH
Confidence            34456888999887 899999999999999999754 46667888889999999999999988776654 5578889999


Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhh---hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 024618           86 TNELEQAAALKYLYGWLRHHPKYGTIAPPELSDS---LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIES  162 (265)
Q Consensus        86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  162 (265)
                      ...|++++|+.+++++++..|........+....   |++++|+..++++++.+|+ +.++..+|.++.+.|++++|+..
T Consensus       553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~  631 (987)
T PRK09782        553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD  631 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999999999999988766555444445   9999999999999999997 99999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618          163 FQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  242 (265)
                      +++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++.++|.++...|++++|+..++++++++|++.
T Consensus       632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA  711 (987)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhCCcccccc
Q 024618          243 NAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      .+....|.+.....+++.|.+
T Consensus       712 ~i~~~~g~~~~~~~~~~~a~~  732 (987)
T PRK09782        712 LITPLTPEQNQQRFNFRRLHE  732 (987)
T ss_pred             hhhhhhhHHHHHHHHHHHHHH
Confidence            999999998888877766644

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.2e-28  Score=184.13  Aligned_cols=251  Identities=18%  Similarity=0.203  Sum_probs=199.5

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHH
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQA   92 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   92 (265)
                      .|.+.+...++++|+..|+.+.+.+|-..+-.-...++++-.++-.+-.-..+.+..++.-.++...-+|..|...++.+
T Consensus       268 ~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE  347 (559)
T KOG1155|consen  268 IAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE  347 (559)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence            34555555555555555555555555555444455555555544444444444555555555666777788888888999


Q ss_pred             HHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618           93 AALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL  169 (265)
Q Consensus        93 ~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  169 (265)
                      +|+.+|+++++++|.....|   |.-+...++...|+..|+++++++|.+..+|+.+|+.|..++-+.-|+-+|+++++.
T Consensus       348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~  427 (559)
T KOG1155|consen  348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL  427 (559)
T ss_pred             HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence            99999999999999988877   888999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh-------cCCCCc
Q 024618          170 KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA-------MNPKAD  242 (265)
Q Consensus       170 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-------~~~~~~  242 (265)
                      .|+++..|..+|.||.+.++.++|+++|.+++.....+..++..+|.+|.++++.++|..+|++.++       ..|+-.
T Consensus       428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~  507 (559)
T KOG1155|consen  428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETI  507 (559)
T ss_pred             CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHH
Confidence            9999999999999999999999999999999988888888999999999999999999999999887       345455


Q ss_pred             hhHHHHHHHHHHhCCcccccc
Q 024618          243 NAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      .+...|+.-+.+.+++++|..
T Consensus       508 ka~~fLA~~f~k~~~~~~As~  528 (559)
T KOG1155|consen  508 KARLFLAEYFKKMKDFDEASY  528 (559)
T ss_pred             HHHHHHHHHHHhhcchHHHHH
Confidence            677778988999999888753

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.4e-28  Score=183.62  Aligned_cols=254  Identities=17%  Similarity=0.181  Sum_probs=227.1

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ   91 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   91 (265)
                      .+|+.+++.|+|++||++|.++|+..|+.+..+.+++-||...|+|++.++...++++++|+...+++..+.++..+|++
T Consensus       120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~  199 (606)
T KOG0547|consen  120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF  199 (606)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH------------------HHHh--------------cCCCCC------------------------------
Q 024618           92 AAALKYLY------------------GWLR--------------HHPKYG------------------------------  109 (265)
Q Consensus        92 ~~A~~~~~------------------~~~~--------------~~~~~~------------------------------  109 (265)
                      ++|+.-..                  +.++              ..|..|                              
T Consensus       200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~  279 (606)
T KOG0547|consen  200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA  279 (606)
T ss_pred             HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence            98765322                  1111              011111                              


Q ss_pred             ------------------------------------C--------------CchhhhhhhhchHHHHHHHHHHHhcCCCC
Q 024618          110 ------------------------------------T--------------IAPPELSDSLYYADVARLFVEAARMSPED  139 (265)
Q Consensus       110 ------------------------------------~--------------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  139 (265)
                                                          .              ..|..+...|+.-.|...+++++.++|..
T Consensus       280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~  359 (606)
T KOG0547|consen  280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF  359 (606)
T ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc
Confidence                                                0              00444556677888888999999999999


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA  219 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  219 (265)
                      ...+..++.+|...++.++-...|.++..++|.++++|+..|.+++-.+++++|+.-|++++.++|++.-++..++.+.+
T Consensus       360 ~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y  439 (606)
T KOG0547|consen  360 NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY  439 (606)
T ss_pred             chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          220 NQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       220 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      ++++++++...|+.+.+..|+.++++...|.++..++++++|++.|
T Consensus       440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y  485 (606)
T KOG0547|consen  440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY  485 (606)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence            9999999999999999999999999999999999999999998765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.97  E-value=2.5e-27  Score=186.80  Aligned_cols=255  Identities=15%  Similarity=0.060  Sum_probs=221.8

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN----SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGV   83 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~   83 (265)
                      ..++.+|..+...|++++|+..+++++...+..    ..++..+|.++...|++++|+..|.++++..|.+..++..++.
T Consensus        70 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~  149 (389)
T PRK11788         70 ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLE  149 (389)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            346778999999999999999999998754332    2467889999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHhcCCCCCCC--------chhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 024618           84 SHTNELEQAAALKYLYGWLRHHPKYGTI--------APPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ  155 (265)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  155 (265)
                      ++...|++++|+..++++++..|.....        .+..+...|++++|+..++++++..|+...++..+|.++...|+
T Consensus       150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  229 (389)
T PRK11788        150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD  229 (389)
T ss_pred             HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC
Confidence            9999999999999999999988875431        15667788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618          156 YDKAIESFQTALKLKPQD-YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA  234 (265)
Q Consensus       156 ~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  234 (265)
                      +++|+..+++++..+|.+ ..++..++.++...|++++|+..++++++..|+.. ....++.++...|++++|+..++++
T Consensus       230 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~  308 (389)
T PRK11788        230 YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQ  308 (389)
T ss_pred             HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999999999988876 46678899999999999999999999999999864 4488999999999999999999999


Q ss_pred             HhcCCCCchhHHHHHHHHHH--hCCcccccc
Q 024618          235 LAMNPKADNAWQYLRISLRY--AGRYPNRGD  263 (265)
Q Consensus       235 ~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~  263 (265)
                      ++..|++......++..+..  .|+.++|+.
T Consensus       309 l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~  339 (389)
T PRK11788        309 LRRHPSLRGFHRLLDYHLAEAEEGRAKESLL  339 (389)
T ss_pred             HHhCcCHHHHHHHHHHhhhccCCccchhHHH
Confidence            99999987655444443322  346666654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.9e-27  Score=176.75  Aligned_cols=254  Identities=19%  Similarity=0.187  Sum_probs=219.8

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLK-NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE   90 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   90 (265)
                      -.+.++....+.++++.-++..+.. .|.++..-...|.+.....++++|+..|+.+.+.+|-..+-.-..+.+++-.++
T Consensus       232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~  311 (559)
T KOG1155|consen  232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND  311 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence            3466666677888898888888887 688888888899999999999999999999999999766655555666555544


Q ss_pred             HHHHHHHHHHHHhcCC---CCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618           91 QAAALKYLYGWLRHHP---KYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL  167 (265)
Q Consensus        91 ~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  167 (265)
                      -.+-.-.-+.+..++.   +.--+.|+.+...++.++|+.+|+++++++|....+|..+|.-|..+++...|+..|++|+
T Consensus       312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv  391 (559)
T KOG1155|consen  312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV  391 (559)
T ss_pred             hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence            3333333344444443   3333349999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618          168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY  247 (265)
Q Consensus       168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  247 (265)
                      +++|.+..+|+.+|+.|..++.+.=|+-+|++++...|+++..|..+|.||.++++.++|+++|++++.....+..++..
T Consensus       392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~  471 (559)
T KOG1155|consen  392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR  471 (559)
T ss_pred             hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888899999


Q ss_pred             HHHHHHHhCCcccccccC
Q 024618          248 LRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       248 l~~~~~~~~~~~~A~~~~  265 (265)
                      ||.+|.++++.++|..+|
T Consensus       472 LakLye~l~d~~eAa~~y  489 (559)
T KOG1155|consen  472 LAKLYEELKDLNEAAQYY  489 (559)
T ss_pred             HHHHHHHHHhHHHHHHHH
Confidence            999999999999987654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2e-27  Score=178.71  Aligned_cols=244  Identities=17%  Similarity=0.176  Sum_probs=196.6

Q ss_pred             ChHHHHHHHHHHHHhC----CCC---------hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618           22 LLSEAVLALEAEVLKN----PEN---------SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus        22 ~~~~A~~~~~~~~~~~----~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      .|..|...+.+.....    ..+         ..++...|..++-.|+...|...|+.+|.++|.+...+..+|.+|...
T Consensus       294 ~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~  373 (606)
T KOG0547|consen  294 GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADE  373 (606)
T ss_pred             hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhh
Confidence            6777777776654322    112         446677788888888888888888888888888888888888888888


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT  165 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  165 (265)
                      ++.++....|.++..++|++++.+   |++...++++++|+.-|++++.++|.+...+..++.+.++++++++++..|+.
T Consensus       374 ~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee  453 (606)
T KOG0547|consen  374 NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEE  453 (606)
T ss_pred             hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888877   88888888888888888888888888888888888888888888888888888


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc------chhhHHHHHHHHHh-cCCcHHHHHHHHHHHhcC
Q 024618          166 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN------YVRAWANMGISYAN-QGMYEESVRYYVRALAMN  238 (265)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~  238 (265)
                      +.+..|+.++++...|.++..++++++|++.|+.++++.|.      ++..+...|.+..+ .+++..|+..++++++++
T Consensus       454 ~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D  533 (606)
T KOG0547|consen  454 AKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD  533 (606)
T ss_pred             HHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC
Confidence            88888888888888888888888888888888888888887      45555544443332 477888888888888888


Q ss_pred             CCCchhHHHHHHHHHHhCCcccccccC
Q 024618          239 PKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      |....++..||.+..+.|+.++|+++|
T Consensus       534 pkce~A~~tlaq~~lQ~~~i~eAielF  560 (606)
T KOG0547|consen  534 PKCEQAYETLAQFELQRGKIDEAIELF  560 (606)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            888888888888888888888888765

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.96  E-value=2.8e-27  Score=200.25  Aligned_cols=243  Identities=14%  Similarity=0.091  Sum_probs=216.3

Q ss_pred             cCChHH---HHHHHHHHHHhCCC--ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHH
Q 024618           20 KGLLSE---AVLALEAEVLKNPE--NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAA   94 (265)
Q Consensus        20 ~~~~~~---A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A   94 (265)
                      .|++.+   +...+.+++...|.  ++.+++.+|.++.. ++..+|+..+.+++...|++. ....+|.++...|++++|
T Consensus       451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeA  528 (987)
T PRK09782        451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATA  528 (987)
T ss_pred             HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHH
Confidence            444544   44455556666677  89999999999987 899999999999999999764 466678888899999999


Q ss_pred             HHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024618           95 LKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ  172 (265)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  172 (265)
                      +..++++....|......  +.++...|++++|+.+++++++.+|........++......|++++|+..++++++.+|+
T Consensus       529 i~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~  608 (987)
T PRK09782        529 LAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS  608 (987)
T ss_pred             HHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence            999999887766644333  778899999999999999999999999888887777777889999999999999999996


Q ss_pred             CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 024618          173 DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISL  252 (265)
Q Consensus       173 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  252 (265)
                       +.++..+|.++.+.|++++|+..+++++..+|+++.++.++|.++...|++++|+..++++++.+|+++.++.++|.++
T Consensus       609 -~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al  687 (987)
T PRK09782        609 -ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN  687 (987)
T ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCcccccccC
Q 024618          253 RYAGRYPNRGDIF  265 (265)
Q Consensus       253 ~~~~~~~~A~~~~  265 (265)
                      ..+|++++|+..|
T Consensus       688 ~~lGd~~eA~~~l  700 (987)
T PRK09782        688 QRLDDMAATQHYA  700 (987)
T ss_pred             HHCCCHHHHHHHH
Confidence            9999999998653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.3e-26  Score=177.15  Aligned_cols=251  Identities=23%  Similarity=0.247  Sum_probs=217.2

Q ss_pred             CCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhh
Q 024618            3 PYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLG   82 (265)
Q Consensus         3 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la   82 (265)
                      |+...--.+.+| +++..|+..+-..+-.++++..|+.+..|+.+|..|...|++.+|..+|.++..++|....+|...|
T Consensus       275 pfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fg  353 (611)
T KOG1173|consen  275 PFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFG  353 (611)
T ss_pred             CCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHh
Confidence            444444445666 7788888888777778888888988999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 024618           83 VSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA  159 (265)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  159 (265)
                      ..+...|+.++|+..|..+.++.|......   |.-+...+.+.-|.+.|..++.+.|.++-+...+|.+.+..+.|.+|
T Consensus       354 hsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A  433 (611)
T KOG1173|consen  354 HSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEA  433 (611)
T ss_pred             HHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHH
Confidence            999999999999999999999888765444   88888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh----CCC---CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHH
Q 024618          160 IESFQTALKL----KPQ---DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYV  232 (265)
Q Consensus       160 ~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  232 (265)
                      ..+|+.++..    .+.   -...+.++|.++.+.+.+++|+..+++++.+.|.++.++..+|.+|..+|+++.|+++|.
T Consensus       434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fh  513 (611)
T KOG1173|consen  434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFH  513 (611)
T ss_pred             HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence            9999999843    222   235688999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCchhHHHHHHHHHH
Q 024618          233 RALAMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       233 ~a~~~~~~~~~~~~~l~~~~~~  254 (265)
                      +++.++|++..+-..|+.+...
T Consensus       514 KaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  514 KALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHhcCCccHHHHHHHHHHHHh
Confidence            9999999987666666655443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.1e-26  Score=177.62  Aligned_cols=255  Identities=18%  Similarity=0.227  Sum_probs=238.0

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE   90 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   90 (265)
                      ...+..++..++|.+..++.+..++.+|-++..+-..--++...|+..+-...-.+.++..|+.+..|+..|..|...|+
T Consensus       248 ~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k  327 (611)
T KOG1173|consen  248 AEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK  327 (611)
T ss_pred             HHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC
Confidence            35788999999999999999999999999888766544499999999998899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618           91 QAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL  167 (265)
Q Consensus        91 ~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  167 (265)
                      +.+|.++|.++..++|.....|   |..+...+..++|+..|..+-++.|........+|.-|...++++-|..+|.+++
T Consensus       328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~  407 (611)
T KOG1173|consen  328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL  407 (611)
T ss_pred             cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            9999999999999999999988   9999999999999999999999999988888999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC-------cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP-------NYVRAWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      .+.|.+|-+...+|.+.+..+.+.+|..+|+.++..-+       .....+.++|.++.+++++++|+.++++++.+.|.
T Consensus       408 ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  408 AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999984322       23456899999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHhCCcccccccC
Q 024618          241 ADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       241 ~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      ++.++..+|.+|..+|+++.|++.|
T Consensus       488 ~~~~~asig~iy~llgnld~Aid~f  512 (611)
T KOG1173|consen  488 DASTHASIGYIYHLLGNLDKAIDHF  512 (611)
T ss_pred             chhHHHHHHHHHHHhcChHHHHHHH
Confidence            9999999999999999999999865

>PRK12370 invasion protein regulator; Provisional

Probab=99.95  E-value=2.5e-26  Score=187.07  Aligned_cols=248  Identities=15%  Similarity=0.011  Sum_probs=198.7

Q ss_pred             hhhhHHHHHc---CChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhc---------CcHHHHHHHHHHHHhcCCChHHHH
Q 024618           11 LKEGQELFRK---GLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEN---------DDDQQAIAAMMRAHEAEPTNLEVL   78 (265)
Q Consensus        11 ~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~   78 (265)
                      +.+|...+..   +.+++|+..|+++++.+|+++.++..+|.++...         +++++|+..++++++++|+++.++
T Consensus       262 ~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~  341 (553)
T PRK12370        262 YLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQAL  341 (553)
T ss_pred             HHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHH
Confidence            4455544433   4467999999999999999999999888877633         348899999999999999999999


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 024618           79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ  155 (265)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  155 (265)
                      ..+|.++...|++++|+..++++++.+|++...+   +.++...|++++|+..++++++++|.++.....++.+++..|+
T Consensus       342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~  421 (553)
T PRK12370        342 GLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG  421 (553)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC
Confidence            9999999999999999999999999999987766   8888899999999999999999999988777777777788899


Q ss_pred             HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618          156 YDKAIESFQTALKLK-PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA  234 (265)
Q Consensus       156 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  234 (265)
                      +++|+..+++++... |+++..+..+|.++...|++++|...+.+.....|....+...++..+...|+  +|...+++.
T Consensus       422 ~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~l  499 (553)
T PRK12370        422 IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREF  499 (553)
T ss_pred             HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHH
Confidence            999999999988774 77888889999999999999999999999888888888888888888888884  777777776


Q ss_pred             HhcCCCCchhHHHHHHHHHHhCCccc
Q 024618          235 LAMNPKADNAWQYLRISLRYAGRYPN  260 (265)
Q Consensus       235 ~~~~~~~~~~~~~l~~~~~~~~~~~~  260 (265)
                      ++.....+.-...+..++.-.|+-+.
T Consensus       500 l~~~~~~~~~~~~~~~~~~~~g~~~~  525 (553)
T PRK12370        500 LESEQRIDNNPGLLPLVLVAHGEAIA  525 (553)
T ss_pred             HHHhhHhhcCchHHHHHHHHHhhhHH
Confidence            65432222222225555555554443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.95  E-value=1.2e-25  Score=189.50  Aligned_cols=253  Identities=13%  Similarity=-0.011  Sum_probs=144.1

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      ++.+|.++...|++++|+..+++++...|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...+
T Consensus        86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~  164 (765)
T PRK10049         86 QRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR  164 (765)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            345566666666666666666666666666666 6666666666666666666666666666666655555554443322


Q ss_pred             hHH----------------------------------------------HHHHHHHHHHhcCCCCCCCc----------h
Q 024618           90 EQA----------------------------------------------AALKYLYGWLRHHPKYGTIA----------P  113 (265)
Q Consensus        90 ~~~----------------------------------------------~A~~~~~~~~~~~~~~~~~~----------~  113 (265)
                      ..+                                              +|+..++.+++..|.++...          .
T Consensus       165 ~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l  244 (765)
T PRK10049        165 LSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL  244 (765)
T ss_pred             ChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence            222                                              22223333332222221111          0


Q ss_pred             hhhhhhhchHHHHHHHHHHHhcC-----------------------------------CCC----HHHHHHHHHHHHHcc
Q 024618          114 PELSDSLYYADVARLFVEAARMS-----------------------------------PED----ADVHIVLGVLYNLSR  154 (265)
Q Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~-----------------------------------~~~----~~~~~~l~~~~~~~~  154 (265)
                      ..+...+++++|+..|+++++..                                   |.+    ......++.++...|
T Consensus       245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g  324 (765)
T PRK10049        245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE  324 (765)
T ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence            11233344555555555555543                                   332    122333344444445


Q ss_pred             CHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618          155 QYDKAIESFQTALKLKPQD---------------YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA  219 (265)
Q Consensus       155 ~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  219 (265)
                      ++++|+..++++....|..               ..++..++.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus       325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~  404 (765)
T PRK10049        325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ  404 (765)
T ss_pred             cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            5555555555544444311               2244556666666677777777777777777777777777777777


Q ss_pred             hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618          220 NQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       220 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      ..|++++|+..++++++.+|++..++..++.++..+|++++|..
T Consensus       405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~  448 (765)
T PRK10049        405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDV  448 (765)
T ss_pred             hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence            77777777777777777777777777777777777777776654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.95  E-value=5.2e-26  Score=163.56  Aligned_cols=239  Identities=18%  Similarity=0.185  Sum_probs=224.6

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ   91 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   91 (265)
                      ++|.+|++.|.+.+|.+.++..++..| .++.+..++.+|....+...|+..+...++..|.+...+...++++..+++.
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~  306 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ  306 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence            679999999999999999999999877 6889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618           92 AAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK  168 (265)
Q Consensus        92 ~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  168 (265)
                      ++|+++|+.+++.+|.+....   +.-+.-.++.+-|+.+|.+.++..-.+++.+.++|.+.+..++++-++..|++++.
T Consensus       307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAls  386 (478)
T KOG1129|consen  307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALS  386 (478)
T ss_pred             HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence            999999999999999998877   77788899999999999999999999999999999999999999999999999998


Q ss_pred             hCC---CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhH
Q 024618          169 LKP---QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW  245 (265)
Q Consensus       169 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  245 (265)
                      ...   .-.++|+++|.+....|++.-|.++|+-++..++++.+++.++|.+-.+.|+.++|..++..+-...|+-.+..
T Consensus       387 tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~  466 (478)
T KOG1129|consen  387 TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVT  466 (478)
T ss_pred             hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccc
Confidence            643   23689999999999999999999999999999999999999999999999999999999999999999987777


Q ss_pred             HHHHHH
Q 024618          246 QYLRIS  251 (265)
Q Consensus       246 ~~l~~~  251 (265)
                      ++++.+
T Consensus       467 ~Nl~~~  472 (478)
T KOG1129|consen  467 TNLQFM  472 (478)
T ss_pred             cceeEE
Confidence            776644

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.95  E-value=9.7e-26  Score=163.18  Aligned_cols=256  Identities=18%  Similarity=0.185  Sum_probs=218.2

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      ..+.+|..++..|++.+|+..|..+++.+|++..+++..|.+|+.+|+-.-|+.-+.+++++.|+...+....|.+++++
T Consensus        40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~  119 (504)
T KOG0624|consen   40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ  119 (504)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCc------------------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIA------------------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLY  150 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  150 (265)
                      |++++|..-|..+++.+|+.....                  .......|+...++......+++.|-+...+...+.+|
T Consensus       120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~  199 (504)
T KOG0624|consen  120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY  199 (504)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence            999999999999999999765333                  33445567888888888888888888888888888888


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH-------------------
Q 024618          151 NLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW-------------------  211 (265)
Q Consensus       151 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------------------  211 (265)
                      ...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++-..+                   
T Consensus       200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~  279 (504)
T KOG0624|consen  200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQA  279 (504)
T ss_pred             HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888877777642211                   


Q ss_pred             -------------------------------HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccc
Q 024618          212 -------------------------------ANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPN  260 (265)
Q Consensus       212 -------------------------------~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  260 (265)
                                                     ..+..|+..-|++.+|+..+.++++++|++..++...+.+|.....|+.
T Consensus       280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~  359 (504)
T KOG0624|consen  280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDD  359 (504)
T ss_pred             HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHH
Confidence                                           3355566667788888888888888888888888888888888888888


Q ss_pred             cccc
Q 024618          261 RGDI  264 (265)
Q Consensus       261 A~~~  264 (265)
                      |+.-
T Consensus       360 AI~d  363 (504)
T KOG0624|consen  360 AIHD  363 (504)
T ss_pred             HHHH
Confidence            7754

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.95  E-value=7.5e-25  Score=175.60  Aligned_cols=255  Identities=17%  Similarity=0.214  Sum_probs=216.9

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      .+..|+.++..|++++|..++.++++.+|.++.+|+.+|.+|.+.|+.+++...+-.|-.++|.+.+.|..++.....+|
T Consensus       142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~  221 (895)
T KOG2076|consen  142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG  221 (895)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHccCHHHHHH
Q 024618           90 EQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDA-----DVHIVLGVLYNLSRQYDKAIE  161 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~  161 (265)
                      ++.+|.-+|.++++.+|.+....   +.++.+.|+...|...+.+++...|...     ..-...+..+...++-+.|++
T Consensus       222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~  301 (895)
T KOG2076|consen  222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK  301 (895)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            99999999999999999987666   8899999999999999999999998221     111222333444444444444


Q ss_pred             HHHHHHhhC-----------------------------------------------------------------------
Q 024618          162 SFQTALKLK-----------------------------------------------------------------------  170 (265)
Q Consensus       162 ~~~~~~~~~-----------------------------------------------------------------------  170 (265)
                      .++.++...                                                                       
T Consensus       302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~  381 (895)
T KOG2076|consen  302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI  381 (895)
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence            444433310                                                                       


Q ss_pred             -----------------------------CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc-chhhHHHHHHHHHh
Q 024618          171 -----------------------------PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN-YVRAWANMGISYAN  220 (265)
Q Consensus       171 -----------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~  220 (265)
                                                   .+.+..+..++.++...|++.+|+.++..+....+. +..+|+.+|.||..
T Consensus       382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~  461 (895)
T KOG2076|consen  382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME  461 (895)
T ss_pred             hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence                                         012355778888899999999999999998877654 35799999999999


Q ss_pred             cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          221 QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       221 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      +|.+++|+++|.+++...|++.++...|+.++.++|+.++|.+.
T Consensus       462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEt  505 (895)
T KOG2076|consen  462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALET  505 (895)
T ss_pred             HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence            99999999999999999999999999999999999999998764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.94  E-value=1.1e-24  Score=183.72  Aligned_cols=253  Identities=9%  Similarity=-0.018  Sum_probs=173.2

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      +...|..+...|++++|+..+++++..+|.++.++..++.++...|++++|+..++++++..|+++. +..+|.++...|
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g  130 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG  130 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence            5778999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhch--------------------------------------------
Q 024618           90 EQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYY--------------------------------------------  122 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------------------------------------------  122 (265)
                      ++++|+..++++++..|++....   +.++...+..                                            
T Consensus       131 ~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~  210 (765)
T PRK10049        131 RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYA  210 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHH
Confidence            99999999999999999987654   3333322222                                            


Q ss_pred             --HHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhhcCcHH
Q 024618          123 --ADVARLFVEAARMSPEDAD-------VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY-SLWNKLGATQANSVQSAD  192 (265)
Q Consensus       123 --~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~  192 (265)
                        ++|+..++.+++..|.++.       +.......+...|++++|+..|+++++..|..| .+...+|.++...|++++
T Consensus       211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~  290 (765)
T PRK10049        211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEK  290 (765)
T ss_pred             HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHH
Confidence              4566666666654332221       111111123444566666666666555533221 122223445555555555


Q ss_pred             HHHHHHHHHhcCCcc-----------------------------------------------------hhhHHHHHHHHH
Q 024618          193 AILAYQRALDLKPNY-----------------------------------------------------VRAWANMGISYA  219 (265)
Q Consensus       193 A~~~~~~~~~~~~~~-----------------------------------------------------~~~~~~l~~~~~  219 (265)
                      |+..|++++..+|.+                                                     ..++..+|.++.
T Consensus       291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~  370 (765)
T PRK10049        291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK  370 (765)
T ss_pred             HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence            555555544443322                                                     123345556666


Q ss_pred             hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618          220 NQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       220 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      ..|++++|++.+++++...|+++.++..+|.++...|++++|++
T Consensus       371 ~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~  414 (765)
T PRK10049        371 YSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAEN  414 (765)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            66666666666666666666666666666666666666666654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.94  E-value=1e-24  Score=164.24  Aligned_cols=234  Identities=14%  Similarity=0.044  Sum_probs=187.3

Q ss_pred             HcCChHHHHHHHHHHHHhCC----CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHH
Q 024618           19 RKGLLSEAVLALEAEVLKNP----ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAA   94 (265)
Q Consensus        19 ~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A   94 (265)
                      ..+..+.++..+.+++...|    ..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            34677889999999997544    23667999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024618           95 LKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKP  171 (265)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  171 (265)
                      +..|+++++++|++...+   |.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+.....+
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~  196 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLD  196 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCC
Confidence            999999999999988776   888999999999999999999999998742221 2234567889999999988775533


Q ss_pred             CCHHHHHHHHHHHHhhcCcHHHHHHHHHH-------HhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC-CCch
Q 024618          172 QDYSLWNKLGATQANSVQSADAILAYQRA-------LDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP-KADN  243 (265)
Q Consensus       172 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~  243 (265)
                      ..  .|. .+.+....|+..++ ..++.+       .+..|..+++|+.+|.++...|++++|+.+|+++++.+| ++.+
T Consensus       197 ~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e  272 (296)
T PRK11189        197 KE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE  272 (296)
T ss_pred             cc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence            22  222 35666667776543 233333       345666778999999999999999999999999999997 6666


Q ss_pred             hHHHHHHHHHHhCC
Q 024618          244 AWQYLRISLRYAGR  257 (265)
Q Consensus       244 ~~~~l~~~~~~~~~  257 (265)
                      ..+.+..+....++
T Consensus       273 ~~~~~~e~~~~~~~  286 (296)
T PRK11189        273 HRYALLELALLGQD  286 (296)
T ss_pred             HHHHHHHHHHHHhh
Confidence            66555555544433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.94  E-value=2.7e-24  Score=157.76  Aligned_cols=201  Identities=17%  Similarity=0.098  Sum_probs=161.2

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      ++.+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|
T Consensus        34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g  113 (234)
T TIGR02521        34 RVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG  113 (234)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence            45667777777888888888887777777777777777888888888888888888888777777777777777777777


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618           90 EQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL  169 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  169 (265)
                      ++++|+..+++++...+                             .|.....+..+|.++...|++++|...+.+++..
T Consensus       114 ~~~~A~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  164 (234)
T TIGR02521       114 KYEQAMQQFEQAIEDPL-----------------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI  164 (234)
T ss_pred             cHHHHHHHHHHHHhccc-----------------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            77777777766654311                             2344667788899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618          170 KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       170 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  239 (265)
                      +|+++..+..+|.++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus       165 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       165 DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            9988888999999999999999999999999888888888888888999999999999888877766543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.94  E-value=2e-24  Score=176.05  Aligned_cols=221  Identities=14%  Similarity=-0.001  Sum_probs=194.5

Q ss_pred             CCCChHH--HHHHHHHHhh---cCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh---------hhHHHHHHHHHHHH
Q 024618           37 NPENSEG--WRLLGIAHAE---NDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE---------LEQAAALKYLYGWL  102 (265)
Q Consensus        37 ~~~~~~~--~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~  102 (265)
                      .|.+.++  ++..|..+..   .+++++|+..|+++++.+|+++.++..+|.++...         +++++|+..+++++
T Consensus       252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            3444443  3445554433   34678999999999999999999999999887644         34899999999999


Q ss_pred             hcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024618          103 RHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNK  179 (265)
Q Consensus       103 ~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  179 (265)
                      +.+|+++..+   +.++...|++++|+..++++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..
T Consensus       332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~  411 (553)
T PRK12370        332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT  411 (553)
T ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence            9999998877   7888999999999999999999999999999999999999999999999999999999999888777


Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHhcC-CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618          180 LGATQANSVQSADAILAYQRALDLK-PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR  257 (265)
Q Consensus       180 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  257 (265)
                      ++.++...|++++|+..+++++... |+++.++..+|.++...|++++|...+.+.....|+...+...++..+...|+
T Consensus       412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  490 (553)
T PRK12370        412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE  490 (553)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence            7777888999999999999999875 77888899999999999999999999999999889888888889888888774

>TIGR00540 hemY_coli hemY protein

Probab=99.94  E-value=5.5e-24  Score=167.64  Aligned_cols=255  Identities=12%  Similarity=-0.014  Sum_probs=208.1

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCCh-HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENS-EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      ++..|......|+++.|..++.++.+..|++. .+....+.++...|+++.|...+++.++..|+++.++..++.++...
T Consensus       121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~  200 (409)
T TIGR00540       121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS  200 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            45668888888999999999999888888775 45666788889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCc-------hhhhhhhhchHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHccCHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIA-------PPELSDSLYYADVARLFVEAARMSP----EDADVHIVLGVLYNLSRQYD  157 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~  157 (265)
                      |++++|.+.+.+..+....++...       .......+..+++...+.++....|    +++.++..++..+...|+++
T Consensus       201 ~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~  280 (409)
T TIGR00540       201 GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD  280 (409)
T ss_pred             hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence            999999999888887754433322       1111233344445567777777777    58899999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHH--HHHHHHHHhhcCcHHHHHHHHHHHhcCCcch--hhHHHHHHHHHhcCCcHHHHHHHH-
Q 024618          158 KAIESFQTALKLKPQDYSLW--NKLGATQANSVQSADAILAYQRALDLKPNYV--RAWANMGISYANQGMYEESVRYYV-  232 (265)
Q Consensus       158 ~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~-  232 (265)
                      +|...++++++..|++....  ..........++.+.+++.++++++..|+++  .....+|+++.+.|++++|.++|+ 
T Consensus       281 ~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~  360 (409)
T TIGR00540       281 SAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKN  360 (409)
T ss_pred             HHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            99999999999999987532  3333344456888999999999999999999  888899999999999999999999 


Q ss_pred             -HHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          233 -RALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       233 -~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                       .+++..|++.. +..+|.++.++|+.++|.++|
T Consensus       361 a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~  393 (409)
T TIGR00540       361 VAACKEQLDAND-LAMAADAFDQAGDKAEAAAMR  393 (409)
T ss_pred             hHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHH
Confidence             68888898655 559999999999999987654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.6e-24  Score=174.94  Aligned_cols=252  Identities=17%  Similarity=0.181  Sum_probs=190.4

Q ss_pred             CCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhh
Q 024618            5 VGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN-SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGV   83 (265)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~   83 (265)
                      .+.+.++.+|.+.+..|+|..|+.+|++++..+|.. ++....+|.|++.+|+.+.|+..|.++++++|.+..++..||.
T Consensus       162 ~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~  241 (1018)
T KOG2002|consen  162 DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGE  241 (1018)
T ss_pred             cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHH
Confidence            344556777888888888888888888888888764 4567778888888888888888888888888888888777776


Q ss_pred             hhhhh---hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcc
Q 024618           84 SHTNE---LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPED---ADVHIVLGVLYNLSR  154 (265)
Q Consensus        84 ~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~  154 (265)
                      +-...   ..+..++..+.++...+|.+|..+   +..+...|++..+..+...++......   ...++.+|.++..+|
T Consensus       242 ~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G  321 (1018)
T KOG2002|consen  242 VDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG  321 (1018)
T ss_pred             HHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence            65543   456677888888888888887766   677777778888777777777654332   355777888888888


Q ss_pred             CHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC----CcHHHHH
Q 024618          155 QYDKAIESFQTALKLKPQD-YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG----MYEESVR  229 (265)
Q Consensus       155 ~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~  229 (265)
                      ++++|..+|.++++.+|++ .-.++.+|..+...|+++.|+.+|++++...|++.++...+|.+|...+    ..+.|..
T Consensus       322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~  401 (1018)
T KOG2002|consen  322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN  401 (1018)
T ss_pred             cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH
Confidence            8888888888888877777 5667777888888888888888888888888888777777777777765    4567777


Q ss_pred             HHHHHHhcCCCCchhHHHHHHHHHHhC
Q 024618          230 YYVRALAMNPKADNAWQYLRISLRYAG  256 (265)
Q Consensus       230 ~~~~a~~~~~~~~~~~~~l~~~~~~~~  256 (265)
                      +..++++..|.+.++|..++.++....
T Consensus       402 ~l~K~~~~~~~d~~a~l~laql~e~~d  428 (1018)
T KOG2002|consen  402 VLGKVLEQTPVDSEAWLELAQLLEQTD  428 (1018)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHhcC
Confidence            777777777777777777777665543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.94  E-value=1.6e-24  Score=163.20  Aligned_cols=210  Identities=13%  Similarity=0.029  Sum_probs=172.2

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      .++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++...
T Consensus        66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~  145 (296)
T PRK11189         66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG  145 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA  166 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  166 (265)
                      |++++|+..++++++.+|+++...  ..+....+++++|+..+.+.....+...  |. .+......|+...+ ..+..+
T Consensus       146 g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~  221 (296)
T PRK11189        146 GRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEE-TLMERL  221 (296)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HHHHHHHccCCCHH-HHHHHH
Confidence            999999999999999999987322  3344567789999999987765433222  22 35555666766544 233333


Q ss_pred             H-------hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC-cchhhHHHHHHHHHhcC
Q 024618          167 L-------KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP-NYVRAWANMGISYANQG  222 (265)
Q Consensus       167 ~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g  222 (265)
                      .       +..|..+.+|+.+|.++...|++++|+.+|+++++.+| +.++..+.+..+....+
T Consensus       222 ~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~  285 (296)
T PRK11189        222 KAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ  285 (296)
T ss_pred             HhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence            3       55667788999999999999999999999999999997 55555555555444433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.93  E-value=7.6e-25  Score=157.62  Aligned_cols=248  Identities=16%  Similarity=0.182  Sum_probs=221.3

Q ss_pred             HHHHcCChHHHHHHHHHHHHhC---CCC----h-HHH--HHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618           16 ELFRKGLLSEAVLALEAEVLKN---PEN----S-EGW--RLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH   85 (265)
Q Consensus        16 ~~~~~~~~~~A~~~~~~~~~~~---~~~----~-~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   85 (265)
                      .++..++...|-......++..   |..    . +-|  ..+|.||+.+|-+.+|.+.++.+++..| .++.+..++.+|
T Consensus       188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY  266 (478)
T KOG1129|consen  188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY  266 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence            3445667777766655554432   211    1 122  3489999999999999999999999877 788999999999


Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 024618           86 TNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIES  162 (265)
Q Consensus        86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  162 (265)
                      .+..+...|+..+...++..|.+...+   +.++...++.++|.++|+.+++.+|.+.++.-.+|.-|+-.++++-|+.+
T Consensus       267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry  346 (478)
T KOG1129|consen  267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY  346 (478)
T ss_pred             HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence            999999999999999999999988877   89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc---chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618          163 FQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN---YVRAWANMGISYANQGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  239 (265)
                      |++++++.-.+++.+.++|.|++..++++-++..|++++....+   -.++|+++|.+....|++.-|..+|+-++..+|
T Consensus       347 YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~  426 (478)
T KOG1129|consen  347 YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA  426 (478)
T ss_pred             HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence            99999999999999999999999999999999999999987442   368999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHhCCccccccc
Q 024618          240 KADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      ++.+++.+|+.+-.+.|+.++|..+
T Consensus       427 ~h~ealnNLavL~~r~G~i~~Arsl  451 (478)
T KOG1129|consen  427 QHGEALNNLAVLAARSGDILGARSL  451 (478)
T ss_pred             chHHHHHhHHHHHhhcCchHHHHHH
Confidence            9999999999999999999998754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.93  E-value=7.8e-26  Score=169.98  Aligned_cols=231  Identities=20%  Similarity=0.162  Sum_probs=119.5

Q ss_pred             CCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhh
Q 024618            5 VGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVS   84 (265)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   84 (265)
                      .+..-|...|......+++++|+..|++++..++.++..+..++.+ ...+++++|+.++.++.+..+ ++..+.....+
T Consensus        42 ~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~  119 (280)
T PF13429_consen   42 DDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQL  119 (280)
T ss_dssp             ------------------------------------------------------------------------------H-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHH
Confidence            3344456688999999999999999999999999988888888888 799999999999999988764 56777788888


Q ss_pred             hhhhhhHHHHHHHHHHHHhcC--CCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 024618           85 HTNELEQAAALKYLYGWLRHH--PKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA  159 (265)
Q Consensus        85 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  159 (265)
                      +...++++++...++++....  +.++..+   +.++...|+.++|+..++++++.+|+++.+...++.++...|+++++
T Consensus       120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~  199 (280)
T PF13429_consen  120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEA  199 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHH
Confidence            999999999999999987644  3344444   89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          160 IESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      ...+....+..|.++..+..+|.++...|++++|+.++++++..+|+++..+..+|.++...|+.++|..+++++++.
T Consensus       200 ~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  200 REALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999988889999999999999999999999999999999999999999999999999999999999999988753

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.93  E-value=5.3e-23  Score=141.20  Aligned_cols=206  Identities=18%  Similarity=0.112  Sum_probs=177.3

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      .+.+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|..++.+|
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence            46778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618           90 EQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL  169 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  169 (265)
                      ++++|...|++++.. |.                            .|..+..+.++|.|..+.|+++.|..+|+++++.
T Consensus       118 ~~~eA~q~F~~Al~~-P~----------------------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~  168 (250)
T COG3063         118 RPEEAMQQFERALAD-PA----------------------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             ChHHHHHHHHHHHhC-CC----------------------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence            888888777777652 21                            3445688999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618          170 KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA  244 (265)
Q Consensus       170 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  244 (265)
                      +|+.+.....++..+++.|++..|..++++.....+-..+.+.....+-...|+-+.+-.+=.+.....|...+.
T Consensus       169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            999999999999999999999999999999888877777777777788889999999888888888888887654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.5e-23  Score=169.39  Aligned_cols=249  Identities=16%  Similarity=0.145  Sum_probs=222.8

Q ss_pred             CcchhhhHHHHHcCCh--HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-HHHHhhhhhh
Q 024618            8 PNPLKEGQELFRKGLL--SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-LEVLLSLGVS   84 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~   84 (265)
                      +.++-.+..+...|..  +.|...|..+++..|++..+++..|.+.+..|+|..|+.+|++++.++|.. ++....+|.|
T Consensus       129 ~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~C  208 (1018)
T KOG2002|consen  129 SHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHC  208 (1018)
T ss_pred             chhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhH
Confidence            3445556666666665  999999999999999999999999999999999999999999999999975 6788889999


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCCCCCCc-h-----hhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 024618           85 HTNELEQAAALKYLYGWLRHHPKYGTIA-P-----PELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDK  158 (265)
Q Consensus        85 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  158 (265)
                      +..+|+.+.|+..|+++++++|.+.... +     ..+.....+..+...+.++...+|.+|.++..++..++..|+|..
T Consensus       209 f~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~  288 (1018)
T KOG2002|consen  209 FWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYER  288 (1018)
T ss_pred             HHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHH
Confidence            9999999999999999999999776665 2     222334557889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618          159 AIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNY-VRAWANMGISYANQGMYEESVRYYVRA  234 (265)
Q Consensus       159 A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a  234 (265)
                      +..+...++......   .+.++.+|.++..+|++++|..+|.++++.+|++ .-.++.+|+.+.+.|+++.|+.+|++.
T Consensus       289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv  368 (1018)
T KOG2002|consen  289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV  368 (1018)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence            999999999875433   4669999999999999999999999999999998 678889999999999999999999999


Q ss_pred             HhcCCCCchhHHHHHHHHHHhC
Q 024618          235 LAMNPKADNAWQYLRISLRYAG  256 (265)
Q Consensus       235 ~~~~~~~~~~~~~l~~~~~~~~  256 (265)
                      ++..|++.++...||.+|...+
T Consensus       369 ~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  369 LKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             HHhCcchHHHHHHHHhHHHhhh
Confidence            9999999999999999998875

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.92  E-value=1.1e-22  Score=159.59  Aligned_cols=249  Identities=13%  Similarity=0.089  Sum_probs=187.6

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCCChHHH-HHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGW-RLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ   91 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   91 (265)
                      .+......|+++.|..++.++.+.+|++..+. ...+.++...|++++|...+++..+.+|+++.++..++.+|...|++
T Consensus       124 aA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw  203 (398)
T PRK10747        124 AAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW  203 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence            35555777888888888888777777664333 34477777788888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCch----hhh---hh----hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 024618           92 AAALKYLYGWLRHHPKYGTIAP----PEL---SD----SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAI  160 (265)
Q Consensus        92 ~~A~~~~~~~~~~~~~~~~~~~----~~~---~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  160 (265)
                      ++|+..+.+..+..+.++....    ..+   ..    ..+.+.....++...+..|+++.+...++..+...|+.++|.
T Consensus       204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~  283 (398)
T PRK10747        204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ  283 (398)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence            8888777777766554332221    111   11    111122223333333345668889999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      ..++++++. |.++......+.+  ..++.+++++..++.++..|+++..+..+|.++...|++++|.++|+++++..|+
T Consensus       284 ~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~  360 (398)
T PRK10747        284 QIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD  360 (398)
T ss_pred             HHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            999999995 5566555555544  4499999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHhCCcccccccC
Q 024618          241 ADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       241 ~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      + ..+..++.++.++|+.++|.++|
T Consensus       361 ~-~~~~~La~~~~~~g~~~~A~~~~  384 (398)
T PRK10747        361 A-YDYAWLADALDRLHKPEEAAAMR  384 (398)
T ss_pred             H-HHHHHHHHHHHHcCCHHHHHHHH
Confidence            5 44668999999999999997764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.92  E-value=7.3e-23  Score=150.17  Aligned_cols=194  Identities=18%  Similarity=0.181  Sum_probs=174.4

Q ss_pred             ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhh
Q 024618           40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDS  119 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (265)
                      .+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++                
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----------------   93 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT----------------   93 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------
Confidence            3678889999999999999999999999999999999999999999988888777766665554                


Q ss_pred             hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhhcCcHHHHHHH
Q 024618          120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK--PQDYSLWNKLGATQANSVQSADAILAY  197 (265)
Q Consensus       120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~  197 (265)
                                     ..|.+..++..+|.++...|++++|+..+++++...  +.....+..+|.++...|++++|...+
T Consensus        94 ---------------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  158 (234)
T TIGR02521        94 ---------------LNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL  158 (234)
T ss_pred             ---------------hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence                           456667889999999999999999999999999853  456778999999999999999999999


Q ss_pred             HHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          198 QRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      ++++..+|.++.++..+|.++...|++++|+..++++++..|.++..+..++.++...|+.++|..+
T Consensus       159 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  225 (234)
T TIGR02521       159 TRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRY  225 (234)
T ss_pred             HHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999999999999999999999999999999999888888888999999999999888653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.9e-23  Score=158.22  Aligned_cols=254  Identities=17%  Similarity=0.224  Sum_probs=191.0

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE   90 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   90 (265)
                      -.+|...+..|+|+.|+..|.+++.++|.+...+.+...+|...|+|++|++--.+.+++.|+.+..|..+|..+...|+
T Consensus         6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen    6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence            45688888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCc----------------------------------------------------------
Q 024618           91 QAAALKYLYGWLRHHPKYGTIA----------------------------------------------------------  112 (265)
Q Consensus        91 ~~~A~~~~~~~~~~~~~~~~~~----------------------------------------------------------  112 (265)
                      +++|+..|.+.++.+|++....                                                          
T Consensus        86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~  165 (539)
T KOG0548|consen   86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY  165 (539)
T ss_pred             HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence            8888888888888777653111                                                          


Q ss_pred             -----------------------------------------------------------------hhhhhhhhchHHHHH
Q 024618          113 -----------------------------------------------------------------PPELSDSLYYADVAR  127 (265)
Q Consensus       113 -----------------------------------------------------------------~~~~~~~~~~~~a~~  127 (265)
                                                                                       |.......++..|++
T Consensus       166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q  245 (539)
T KOG0548|consen  166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ  245 (539)
T ss_pred             cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence                                                                             223333344667777


Q ss_pred             HHHHHHhcCCCCHHHH-----------------------------------------HHHHHHHHHccCHHHHHHHHHHH
Q 024618          128 LFVEAARMSPEDADVH-----------------------------------------IVLGVLYNLSRQYDKAIESFQTA  166 (265)
Q Consensus       128 ~~~~~~~~~~~~~~~~-----------------------------------------~~l~~~~~~~~~~~~A~~~~~~~  166 (265)
                      .+..++.++ .+...+                                         ..+|..+...++++.|+.+|.++
T Consensus       246 ~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka  324 (539)
T KOG0548|consen  246 HYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA  324 (539)
T ss_pred             HHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence            777777776 433222                                         22344555556666677777666


Q ss_pred             HhhC--------------------------CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618          167 LKLK--------------------------PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN  220 (265)
Q Consensus       167 ~~~~--------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  220 (265)
                      +...                          |.-..--...|..+++.|+|..|+..|.+++..+|+++..|.+.|.||.+
T Consensus       325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k  404 (539)
T KOG0548|consen  325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK  404 (539)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence            5432                          11122234457778888888888888888888888888888888888888


Q ss_pred             cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          221 QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       221 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      +|.+..|+...+.+++++|+...+|..-|.++..+.+|++|.+.|
T Consensus       405 L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay  449 (539)
T KOG0548|consen  405 LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAY  449 (539)
T ss_pred             HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888877654

>TIGR00540 hemY_coli hemY protein

Probab=99.91  E-value=6.3e-22  Score=156.00  Aligned_cols=255  Identities=13%  Similarity=0.006  Sum_probs=217.4

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH-HHHhhhhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL-EVLLSLGVSHTNEL   89 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~   89 (265)
                      +..|...+..|+++.|.+.+.++.+..|+....+...|.+....|+++.|..++.++.+..|++. .+....+.++...|
T Consensus        88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~  167 (409)
T TIGR00540        88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN  167 (409)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence            56788889999999999999999999898888888899999999999999999999999999875 56666799999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHH----HHHHHHHHccCHHHHHHH
Q 024618           90 EQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHI----VLGVLYNLSRQYDKAIES  162 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~  162 (265)
                      +++.|...++.+.+..|+++...   +.++...|++++|.+.+.+..+..+.++....    ....-....+..+++...
T Consensus       168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~  247 (409)
T TIGR00540       168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG  247 (409)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            99999999999999999999766   99999999999999999999987554443321    222223455556666778


Q ss_pred             HHHHHhhCC----CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH--HHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618          163 FQTALKLKP----QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW--ANMGISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       163 ~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      +.++....|    +++..+..++..+...|++++|...++++++..|++....  ..........++.+.+++.++++++
T Consensus       248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk  327 (409)
T TIGR00540       248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK  327 (409)
T ss_pred             HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence            888888777    5899999999999999999999999999999999987532  2233334456888999999999999


Q ss_pred             cCCCCc--hhHHHHHHHHHHhCCcccccccC
Q 024618          237 MNPKAD--NAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       237 ~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      ..|+++  .....+|.++.+.|++++|.+.|
T Consensus       328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~l  358 (409)
T TIGR00540       328 NVDDKPKCCINRALGQLLMKHGEFIEAADAF  358 (409)
T ss_pred             hCCCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence            999999  88899999999999999998754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.91  E-value=2.9e-22  Score=137.62  Aligned_cols=189  Identities=18%  Similarity=0.136  Sum_probs=167.7

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhc
Q 024618           42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY  121 (265)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (265)
                      .+...+|.-|+..|++..|..-++++++.+|++..+|..++.+|...|+.+.|-+.|+                      
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~Yr----------------------   93 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYR----------------------   93 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHH----------------------
Confidence            4778899999999999999999999999999999999999999999998877775555                      


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhhcCcHHHHHHHHH
Q 024618          122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL--KPQDYSLWNKLGATQANSVQSADAILAYQR  199 (265)
Q Consensus       122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  199 (265)
                               ++++++|++.+++.+.|..++.+|++++|...|++++..  .+..+.++.++|.|..+.|+++.|..+|++
T Consensus        94 ---------kAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r  164 (250)
T COG3063          94 ---------KALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR  164 (250)
T ss_pred             ---------HHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence                     455556778999999999999999999999999999974  455678999999999999999999999999


Q ss_pred             HHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccc
Q 024618          200 ALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNR  261 (265)
Q Consensus       200 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  261 (265)
                      +++.+|+.+.....++..++..|++..|..++++.....+-..+.+.....+-...|+-+.|
T Consensus       165 aL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a  226 (250)
T COG3063         165 ALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA  226 (250)
T ss_pred             HHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999999999999999999999888776677766666777777776544

>PLN02789 farnesyltranstransferase

Probab=99.91  E-value=6.4e-22  Score=148.79  Aligned_cols=204  Identities=13%  Similarity=0.044  Sum_probs=138.8

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH--HH
Q 024618           17 LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEND-DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ--AA   93 (265)
Q Consensus        17 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--~~   93 (265)
                      +...+++++|+..+.+++..+|.+..+|..++.++..+| ++++++..+.++++.+|++..+|...+.+....|+.  ++
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence            345678888999999999999988888988888888888 578889999999988998888888888887777653  55


Q ss_pred             HHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---cCH----HHHHHHH
Q 024618           94 ALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS---RQY----DKAIESF  163 (265)
Q Consensus        94 A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~~~  163 (265)
                      ++.+++++++.+|++..++   +.++...|+++++++.+.++++.+|.+..+|..++.+....   |.+    ++++.+.
T Consensus       127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~  206 (320)
T PLN02789        127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT  206 (320)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence            6666666666666665555   55555556666666666666666666666666666555443   222    3455555


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618          164 QTALKLKPQDYSLWNKLGATQAN----SVQSADAILAYQRALDLKPNYVRAWANMGISYAN  220 (265)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  220 (265)
                      .+++..+|++..+|..++.++..    .++..+|++.+.+++...|.++.++..++.+|..
T Consensus       207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence            56666666666666666666655    2334556666666666566666666666666554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.91  E-value=1.1e-23  Score=161.72  Aligned_cols=221  Identities=21%  Similarity=0.218  Sum_probs=191.7

Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhc
Q 024618           45 RLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLY  121 (265)
Q Consensus        45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~  121 (265)
                      +..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++..++   +..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            46788999999999999999999999999999999999999999999999999999999999998877   888888999


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHH-------HHHHHHHccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhhcCcHH
Q 024618          122 YADVARLFVEAARMSPEDADVHIV-------LGVLYNLSRQYDKAIESFQTALKLKP--QDYSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       122 ~~~a~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~  192 (265)
                      -.+|++++.+-+...|........       .............-.+.|..+....|  .++++...||.+|...|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999999999998877653211110       00001111223345566667777777  789999999999999999999


Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      |+.+|+.++...|++...|..||-.+..-.+.++|+..|++|+++.|....++++||.++..+|.|++|.++|
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl  521 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL  521 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998764

>PLN02789 farnesyltranstransferase

Probab=99.91  E-value=5.7e-22  Score=149.07  Aligned_cols=207  Identities=11%  Similarity=0.006  Sum_probs=186.0

Q ss_pred             HHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh-hHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhch--
Q 024618           49 IAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL-EQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYY--  122 (265)
Q Consensus        49 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--  122 (265)
                      .++...+..++|+..+.++++++|.+..+|...+.++...| ++++++..++++++.+|++..++   +.++...+..  
T Consensus        45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence            33455678899999999999999999999999999999998 68999999999999999998888   5566666653  


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh---cCc----HHHHH
Q 024618          123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANS---VQS----ADAIL  195 (265)
Q Consensus       123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~  195 (265)
                      ++++.++.++++.+|.+..+|...+.++...|+++++++.+.++++.+|.+..+|..++.+....   |.+    ++++.
T Consensus       125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~  204 (320)
T PLN02789        125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK  204 (320)
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999988776   333    47888


Q ss_pred             HHHHHHhcCCcchhhHHHHHHHHHh----cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 024618          196 AYQRALDLKPNYVRAWANMGISYAN----QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYA  255 (265)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  255 (265)
                      +..+++..+|++..+|..++.++..    .++..+|++.+.+++...|.++.++..|+.++...
T Consensus       205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence            9999999999999999999999988    45678899999999999999999999999999863

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=7.3e-24  Score=156.67  Aligned_cols=255  Identities=15%  Similarity=0.141  Sum_probs=216.8

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      ...+|..+++..+|.+|+..+..+++..|++...|...+.+++..+++++|....++.+++.|..+..+...+.++...+
T Consensus        52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~  131 (486)
T KOG0550|consen   52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS  131 (486)
T ss_pred             HHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence            45678888999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hHHHHHHHHHHHH------------hcCCCC---CCCc------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024618           90 EQAAALKYLYGWL------------RHHPKY---GTIA------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGV  148 (265)
Q Consensus        90 ~~~~A~~~~~~~~------------~~~~~~---~~~~------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  148 (265)
                      +..+|...++..-            .+-|.+   +...      +.++...+++++|...--..+++++.+..+++..|.
T Consensus       132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~  211 (486)
T KOG0550|consen  132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL  211 (486)
T ss_pred             HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence            8888776655221            111111   1111      778888899999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc----hhhHH
Q 024618          149 LYNLSRQYDKAIESFQTALKLKPQDY------------SLWNKLGATQANSVQSADAILAYQRALDLKPNY----VRAWA  212 (265)
Q Consensus       149 ~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~  212 (265)
                      ++...++.+.|+..|++++.++|+..            ..+..-|.-.++.|++.+|.+.|..+|.++|++    +..|.
T Consensus       212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~  291 (486)
T KOG0550|consen  212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG  291 (486)
T ss_pred             ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence            99999999999999999999888763            446677888888899999999999999999876    35677


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      +++.+..++|+.++|+...+.+++++|....++...|.|+..++++++|++.
T Consensus       292 nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d  343 (486)
T KOG0550|consen  292 NRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVED  343 (486)
T ss_pred             HhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999999999999889999999999999988888754

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.7e-21  Score=147.59  Aligned_cols=239  Identities=19%  Similarity=0.237  Sum_probs=215.7

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-------HHHHhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-------LEVLLSLGV   83 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~   83 (265)
                      -.+|...+...++..|++.+..++.++ .+...+...+-+|+..|.+.+++.....+++.....       ..+...+|.
T Consensus       228 k~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~  306 (539)
T KOG0548|consen  228 KELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN  306 (539)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence            357899999999999999999999999 888899999999999999999999999988865543       234455777


Q ss_pred             hhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618           84 SHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF  163 (265)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  163 (265)
                      .+...++++.++.+|.+++....+     ..+.......++++...+...-.+|.-..-....|..++..|+|..|+..|
T Consensus       307 a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y  381 (539)
T KOG0548|consen  307 AYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY  381 (539)
T ss_pred             hhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            888899999999999998875544     556777788888888888888888988888888899999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch
Q 024618          164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN  243 (265)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  243 (265)
                      .++++.+|+++..+.+.|.||.+.|.+..|+...+.+++++|+...+|...|.++..+.+|++|++.|+++++.+|++.+
T Consensus       382 teAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e  461 (539)
T KOG0548|consen  382 TEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE  461 (539)
T ss_pred             HHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHh
Q 024618          244 AWQYLRISLRYA  255 (265)
Q Consensus       244 ~~~~l~~~~~~~  255 (265)
                      +...+..|...+
T Consensus       462 ~~~~~~rc~~a~  473 (539)
T KOG0548|consen  462 AIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHh
Confidence            999999888764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.90  E-value=1.6e-21  Score=141.56  Aligned_cols=243  Identities=17%  Similarity=0.207  Sum_probs=176.7

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH---HHH-------
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL---EVL-------   78 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~-------   78 (265)
                      ..|.+|..|...|+-.-|+.-+.++++..|+...+....|.+++++|++++|..-|..+++.+|++.   ++.       
T Consensus        74 aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~  153 (504)
T KOG0624|consen   74 AIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ  153 (504)
T ss_pred             HHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH
Confidence            3466777777777777777777777777777777777777777777777777777777777776432   111       


Q ss_pred             -----hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024618           79 -----LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLY  150 (265)
Q Consensus        79 -----~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  150 (265)
                           ......+...|+...++.+...++++.|-+....   +.++...|....|+.-++.+-++..++.+.++.++.++
T Consensus       154 e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~  233 (504)
T KOG0624|consen  154 EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLL  233 (504)
T ss_pred             HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence                 1222334455666677777777777766665555   66667777777777777777777777777777777777


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCH--------------------------------------------------HHHHHH
Q 024618          151 NLSRQYDKAIESFQTALKLKPQDY--------------------------------------------------SLWNKL  180 (265)
Q Consensus       151 ~~~~~~~~A~~~~~~~~~~~~~~~--------------------------------------------------~~~~~l  180 (265)
                      +..|+.+.++...+++++++|++-                                                  ..+..+
T Consensus       234 Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~  313 (504)
T KOG0624|consen  234 YTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVL  313 (504)
T ss_pred             HhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehee
Confidence            777777777777777776666542                                                  122334


Q ss_pred             HHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 024618          181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS  251 (265)
Q Consensus       181 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  251 (265)
                      ..|+...+++.+|++.+.+++..+|++..++...+.+|.-...|+.|+..|+++.+.++++..+...+-.+
T Consensus       314 c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~A  384 (504)
T KOG0624|consen  314 CTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERA  384 (504)
T ss_pred             eecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            55567778999999999999999999999999999999999999999999999999999998776665443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.90  E-value=3e-21  Score=152.91  Aligned_cols=243  Identities=18%  Similarity=0.165  Sum_probs=207.9

Q ss_pred             hHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc-CCChHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 024618           23 LSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA-EPTNLEVLLSLGVSHTNELEQAAALKYLYGW  101 (265)
Q Consensus        23 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  101 (265)
                      ..++++.++++++.+|.|+.+.+.++.-|...++.+.|....+++++. ..+++.+|..++.++...+++.+|+...+.+
T Consensus       460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a  539 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA  539 (799)
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999 5567899999999999999999999999999


Q ss_pred             HhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhc-------------------------------------------
Q 024618          102 LRHHPKYGTIA---PPELSDSLYYADVARLFVEAARM-------------------------------------------  135 (265)
Q Consensus       102 ~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------------  135 (265)
                      +.-.|++....   ..+-...++.++++..+...+..                                           
T Consensus       540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l  619 (799)
T KOG4162|consen  540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL  619 (799)
T ss_pred             HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence            99888855433   22222333333333332221110                                           


Q ss_pred             ---------------------CCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC
Q 024618          136 ---------------------SPED-----ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ  189 (265)
Q Consensus       136 ---------------------~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  189 (265)
                                           .|+.     ...|...+..+...+..++|..++.++-.++|..+..|+..|.++...|+
T Consensus       620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~  699 (799)
T KOG4162|consen  620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ  699 (799)
T ss_pred             HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh
Confidence                                 0010     13567788889999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHH--HHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVR--YYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      ..+|.+.|..++.++|+++.....+|.++.+.|+..-|..  .+..+++++|.++++|+.+|.++.++|+.+.|.++|
T Consensus       700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf  777 (799)
T KOG4162|consen  700 LEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF  777 (799)
T ss_pred             hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence            9999999999999999999999999999999999888888  999999999999999999999999999999998775

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.1e-21  Score=144.00  Aligned_cols=243  Identities=17%  Similarity=0.163  Sum_probs=158.0

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ   91 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   91 (265)
                      ..|.+++..|++++|+..|+++...+|....+.-..|..+...|+++.-.......+..+.....-|+--+...+..+++
T Consensus       237 ~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~  316 (564)
T KOG1174|consen  237 ALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKF  316 (564)
T ss_pred             HHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhH
Confidence            56888888888888888888888888877776666666666666655555555555555544445555555555666666


Q ss_pred             HHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH--------
Q 024618           92 AAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAI--------  160 (265)
Q Consensus        92 ~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~--------  160 (265)
                      ..|+.+-++++..+|.+...+   |..+...++.++|+-.|+.+..+.|.+.+.+..+..+|...|++.+|.        
T Consensus       317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~  396 (564)
T KOG1174|consen  317 ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR  396 (564)
T ss_pred             HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence            666666666666666665554   666666666666666666666666666666666666666655555444        


Q ss_pred             ----------------------------HHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHH
Q 024618          161 ----------------------------ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA  212 (265)
Q Consensus       161 ----------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  212 (265)
                                                  +.+++++++.|....+...++.++...|.++.++..+++.+...|+ ...+.
T Consensus       397 ~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~  475 (564)
T KOG1174|consen  397 LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHN  475 (564)
T ss_pred             HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHH
Confidence                                        4445555555555566666666666667777777777776666555 35666


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 024618          213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYA  255 (265)
Q Consensus       213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  255 (265)
                      .+|+++...+.+++|+++|..++.++|++..+...+-..-...
T Consensus       476 ~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~  518 (564)
T KOG1174|consen  476 HLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD  518 (564)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence            6777777777777777777777777777766666665544433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.90  E-value=9.5e-22  Score=147.98  Aligned_cols=234  Identities=15%  Similarity=0.134  Sum_probs=187.4

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618           24 SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR  103 (265)
Q Consensus        24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  103 (265)
                      .+|..+-+.++..+..++.++.+.|.+.+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+.-.
T Consensus       473 ~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~  552 (840)
T KOG2003|consen  473 ADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA  552 (840)
T ss_pred             hHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH
Confidence            33333333444444445555666677777788888888888888888888888888888888888888888888887766


Q ss_pred             cCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024618          104 HHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL  180 (265)
Q Consensus       104 ~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  180 (265)
                      +--++...+   +.+|....+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+..-.+
T Consensus       553 il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl  632 (840)
T KOG2003|consen  553 ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWL  632 (840)
T ss_pred             HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHH
Confidence            655555544   77888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618          181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR  257 (265)
Q Consensus       181 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  257 (265)
                      |..|....-+++|+.+|+++--+.|+...-...++.|+.+.|+|++|.+.|+..-...|.+.+.+..|.++.-.+|-
T Consensus       633 ~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  633 AAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            88888888888899999888888888777677788888888999999999988888888888888877777666654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.90  E-value=1.3e-20  Score=135.52  Aligned_cols=231  Identities=17%  Similarity=0.121  Sum_probs=203.8

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-----HHHHhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-----LEVLLSLGVS   84 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~   84 (265)
                      -+-.|.-+.-..+.++|+..|-.+++.+|...++...+|+.+...|..+.|+..-+..++ .|+.     ..+...+|.-
T Consensus        38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence            355677888889999999999999999999999999999999999999999999777665 4443     3578899999


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHccCH
Q 024618           85 HTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDA-----DVHIVLGVLYNLSRQY  156 (265)
Q Consensus        85 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~  156 (265)
                      |+..|-++.|...|........--....   ..+|....+|++|++..++..+..+...     ..+..++..+....+.
T Consensus       117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~  196 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV  196 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence            9999999999999998876433333333   7889999999999999999999887653     4677888888899999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618          157 DKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY-VRAWANMGISYANQGMYEESVRYYVRAL  235 (265)
Q Consensus       157 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~  235 (265)
                      +.|+..+.++++.+|++..+-..+|.+....|+++.|++.++.+++.+|.. +.+.-.+..||.++|+.++.+.++.++.
T Consensus       197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~  276 (389)
T COG2956         197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM  276 (389)
T ss_pred             HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987 5778889999999999999999999999


Q ss_pred             hcCCCC
Q 024618          236 AMNPKA  241 (265)
Q Consensus       236 ~~~~~~  241 (265)
                      +..++.
T Consensus       277 ~~~~g~  282 (389)
T COG2956         277 ETNTGA  282 (389)
T ss_pred             HccCCc
Confidence            988763

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.89  E-value=1.4e-20  Score=147.05  Aligned_cols=248  Identities=17%  Similarity=0.191  Sum_probs=182.7

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE   90 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   90 (265)
                      +..+......|+...|..++.++++.+|++.+.|+..-.+.....+++.|..+|.++....| ...+|+.-+.+...+++
T Consensus       588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~  666 (913)
T KOG0495|consen  588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDN  666 (913)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhh
Confidence            34455555666666666666666666666666666666666666666666666666666544 34566666666666777


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618           91 QAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL  167 (265)
Q Consensus        91 ~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  167 (265)
                      .++|+..++.+++..|+...++   |+++.+.++.+.|...|...++..|..+..|..++.+-...|....|...++++.
T Consensus       667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar  746 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR  746 (913)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            7777777777777777776666   7777777777777777777777777777777777777777777777777777777


Q ss_pred             hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc------------------------------chhhHHHHHHH
Q 024618          168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN------------------------------YVRAWANMGIS  217 (265)
Q Consensus       168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~l~~~  217 (265)
                      -.+|++...|......-.+.|+.+.|.....++++..|+                              ++.++...|..
T Consensus       747 lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l  826 (913)
T KOG0495|consen  747 LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL  826 (913)
T ss_pred             hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence            777777777777777777778888777777777766554                              34455778888


Q ss_pred             HHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcc
Q 024618          218 YANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYP  259 (265)
Q Consensus       218 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  259 (265)
                      +....++++|.++|.++++.+|++.++|.+.-..+...|.-+
T Consensus       827 fw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee  868 (913)
T KOG0495|consen  827 FWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE  868 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH
Confidence            888899999999999999999999999988888888888544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.89  E-value=1.7e-20  Score=150.93  Aligned_cols=255  Identities=16%  Similarity=0.146  Sum_probs=209.0

Q ss_pred             CCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618            6 GHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH   85 (265)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   85 (265)
                      ....++.+|.++-.+|+.+++...+-.+-..+|.+.+.|..++....++|++++|.-+|.++++.+|.+....+..+.+|
T Consensus       172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~  251 (895)
T KOG2076|consen  172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLY  251 (895)
T ss_pred             chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            44568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCCCCCc--------------------------------------------hhhhhhhhc
Q 024618           86 TNELEQAAALKYLYGWLRHHPKYGTIA--------------------------------------------PPELSDSLY  121 (265)
Q Consensus        86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~  121 (265)
                      .++|+...|...|.+++...|....-+                                            +.+++....
T Consensus       252 ~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q  331 (895)
T KOG2076|consen  252 QKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ  331 (895)
T ss_pred             HHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH
Confidence            999999999999999999998322100                                            333334444


Q ss_pred             hHHHHHHHHHHHh-------------------------------------------------------------cC---C
Q 024618          122 YADVARLFVEAAR-------------------------------------------------------------MS---P  137 (265)
Q Consensus       122 ~~~a~~~~~~~~~-------------------------------------------------------------~~---~  137 (265)
                      ++.+.........                                                             .+   .
T Consensus       332 ~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~  411 (895)
T KOG2076|consen  332 SDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVS  411 (895)
T ss_pred             HHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChh
Confidence            4444433332222                                                             00   0


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618          138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ-DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI  216 (265)
Q Consensus       138 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  216 (265)
                      +++..+..++..+...|++.+|+.++..+....+. +..+|..+|.||..+|.+++|+++|++++...|++.++...++.
T Consensus       412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Las  491 (895)
T KOG2076|consen  412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLAS  491 (895)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHH
Confidence            12347788899999999999999999999877553 36799999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcHHHHHHHHHHHhcCCCC---------chhHHHHHHHHHHhCCccc
Q 024618          217 SYANQGMYEESVRYYVRALAMNPKA---------DNAWQYLRISLRYAGRYPN  260 (265)
Q Consensus       217 ~~~~~g~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~~~  260 (265)
                      ++.++|+.++|.+.+.....-++.+         .........++...|+.++
T Consensus       492 l~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~  544 (895)
T KOG2076|consen  492 LYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE  544 (895)
T ss_pred             HHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence            9999999999999999877433222         2345567777887777654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=2.9e-21  Score=145.41  Aligned_cols=255  Identities=16%  Similarity=0.167  Sum_probs=227.6

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCCh-HHHHHHHHHHhh--cCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENS-EGWRLLGIAHAE--NDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN   87 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   87 (265)
                      +.++..+++.|+++.|+++++-.-+.+.... .+-.++...++.  -.++..|..+...++.++.-++.++.+.|.+.+.
T Consensus       423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~  502 (840)
T KOG2003|consen  423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA  502 (840)
T ss_pred             hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence            4568889999999999999886655443322 233445555544  3478999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024618           88 ELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQ  164 (265)
Q Consensus        88 ~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  164 (265)
                      .|++++|.+.|+.++..+......+   |..+..+|+.++|+++|-+...+--++..+++.++.+|..+.+..+|++.+.
T Consensus       503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~  582 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM  582 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            9999999999999998877766655   7888899999999999999988888899999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618          165 TALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA  244 (265)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  244 (265)
                      ++..+-|++|.++..+|.+|-+.|+..+|.+++-......|.+.++.-.+|..|....-+++|+.+|+++.-+.|+...-
T Consensus       583 q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw  662 (840)
T KOG2003|consen  583 QANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW  662 (840)
T ss_pred             HhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHhCCcccccccC
Q 024618          245 WQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       245 ~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      ...++.|+.+.|++.+|.++|
T Consensus       663 qlmiasc~rrsgnyqka~d~y  683 (840)
T KOG2003|consen  663 QLMIASCFRRSGNYQKAFDLY  683 (840)
T ss_pred             HHHHHHHHHhcccHHHHHHHH
Confidence            888999999999999998764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.89  E-value=3.1e-20  Score=154.99  Aligned_cols=250  Identities=12%  Similarity=0.007  Sum_probs=193.2

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHH
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQA   92 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   92 (265)
                      .|..+...|++++|+..|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++...++..
T Consensus       108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~  186 (822)
T PRK14574        108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY  186 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH
Confidence            37788899999999999999999999999999999999999999999999999999999885554 55555555566776


Q ss_pred             HHHHHHHHHHhcCCCCCCCc------------------------------------------------------------
Q 024618           93 AALKYLYGWLRHHPKYGTIA------------------------------------------------------------  112 (265)
Q Consensus        93 ~A~~~~~~~~~~~~~~~~~~------------------------------------------------------------  112 (265)
                      +|+..++++++.+|++....                                                            
T Consensus       187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~  266 (822)
T PRK14574        187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI  266 (822)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            69999998888888765111                                                            


Q ss_pred             -------------------------------------------------------------------hhhhhhhhchHHH
Q 024618          113 -------------------------------------------------------------------PPELSDSLYYADV  125 (265)
Q Consensus       113 -------------------------------------------------------------------~~~~~~~~~~~~a  125 (265)
                                                                                         +..+...++.++|
T Consensus       267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA  346 (822)
T PRK14574        267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA  346 (822)
T ss_pred             HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence                                                                               3334444445555


Q ss_pred             HHHHHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHH
Q 024618          126 ARLFVEAARMSP------EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKP---------------QDYSLWNKLGATQ  184 (265)
Q Consensus       126 ~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~l~~~~  184 (265)
                      +.+|+.++...|      .+......|...+...+++++|..++++..+..|               +.......++.++
T Consensus       347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~  426 (822)
T PRK14574        347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL  426 (822)
T ss_pred             HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence            555555554331      1222234556666677777777777777766433               1235666778888


Q ss_pred             HhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618          185 ANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       185 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      ...|++.+|.+.+++.+...|.++.++..+|.++...|.+.+|...++.+..++|++..+...++.++..+|++++|..
T Consensus       427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~  505 (822)
T PRK14574        427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL  505 (822)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999988743

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.88  E-value=7e-20  Score=143.78  Aligned_cols=251  Identities=10%  Similarity=0.002  Sum_probs=200.2

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH-HHHHHhhcCcHHHHHHHHHHHHhcCCChHHH-Hhhhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRL-LGIAHAENDDDQQAIAAMMRAHEAEPTNLEV-LLSLGVSHTNE   88 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~~~~   88 (265)
                      +..|...+..|++++|.+.+.+..+..+ ++...+. .+.+....|+++.|..++.++.+.+|++... ....+.++...
T Consensus        88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~  166 (398)
T PRK10747         88 TEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR  166 (398)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence            5668888889999999988887655433 3444444 4666699999999999999999999987543 34558999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHH--------HHHHHHHHccCHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHI--------VLGVLYNLSRQYD  157 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~  157 (265)
                      |+++.|+..++++.+..|+++...   +.++...|++++|+..+.+..+..+.++....        .+........+.+
T Consensus       167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~  246 (398)
T PRK10747        167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE  246 (398)
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            999999999999999999998777   89999999999999999999988766544222        2222222233444


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          158 KAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       158 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      .....++..-...|+++.+...++..+...|+.++|...++++++. |.++......+.+  ..++.+++++..++.++.
T Consensus       247 ~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~  323 (398)
T PRK10747        247 GLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQ  323 (398)
T ss_pred             HHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhh
Confidence            4455555554556779999999999999999999999999999995 4455544444444  459999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          238 NPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      .|+++..+..+|.++...|++++|.+.|
T Consensus       324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~l  351 (398)
T PRK10747        324 HGDTPLLWSTLGQLLMKHGEWQEASLAF  351 (398)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999999999999999998764

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.88  E-value=1.9e-20  Score=146.96  Aligned_cols=226  Identities=18%  Similarity=0.145  Sum_probs=168.7

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHh--------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--------CCCh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLK--------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--------EPTN   74 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~   74 (265)
                      ..+|..|..+|+|++|+..++.+++.        .|.-......+|.+|...+++.+|+..|++++.+        +|.-
T Consensus       203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v  282 (508)
T KOG1840|consen  203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV  282 (508)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            35789999999999999999999987        3332334445899999999999999999999976        3444


Q ss_pred             HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc-----------hhhhhhhhchHHHHHHHHHHHhcC-------
Q 024618           75 LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA-----------PPELSDSLYYADVARLFVEAARMS-------  136 (265)
Q Consensus        75 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~a~~~~~~~~~~~-------  136 (265)
                      ..++.+||.+|...|++++|..++++++++........           +.++...+++++|..++++++++.       
T Consensus       283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~  362 (508)
T KOG1840|consen  283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED  362 (508)
T ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence            67899999999999999999999999887654411111           666777777888888777777652       


Q ss_pred             -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc----
Q 024618          137 -PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK--------PQDYSLWNKLGATQANSVQSADAILAYQRALDL----  203 (265)
Q Consensus       137 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----  203 (265)
                       |.-+..+.++|.+|...|++++|.+.+++++++.        +.....+..+|..+.+.+++.+|...|.+++.+    
T Consensus       363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~  442 (508)
T KOG1840|consen  363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC  442 (508)
T ss_pred             chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence             2234567778888888888888888888887653        222455677777777788887777777777654    


Q ss_pred             ---CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618          204 ---KPNYVRAWANMGISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       204 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                         .|+....+.+|+.+|..+|++++|+++..+++.
T Consensus       443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence               233345677788888888888888888777764

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.88  E-value=8.6e-20  Score=142.66  Aligned_cols=237  Identities=17%  Similarity=0.134  Sum_probs=123.2

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      |+.-+..+.+.+-++-|+.+|..+++.+|.....|...+..--.-|..++-..++++++...|.....|...+..+...|
T Consensus       519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag  598 (913)
T KOG0495|consen  519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG  598 (913)
T ss_pred             HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence            34445555555555555555555555555555555544444444444454455555555555544444544454444455


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCc------------------------------------hhhhhhhhchHHHHHHHHHHH
Q 024618           90 EQAAALKYLYGWLRHHPKYGTIA------------------------------------PPELSDSLYYADVARLFVEAA  133 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~a~~~~~~~~  133 (265)
                      +...|...+..+++.+|++..++                                    +.+...++..++|++++++++
T Consensus       599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l  678 (913)
T KOG0495|consen  599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEAL  678 (913)
T ss_pred             CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence            55555555555555555444444                                    344444455555555555555


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHH
Q 024618          134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWAN  213 (265)
Q Consensus       134 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  213 (265)
                      +..|+....|..+|+++.+.++.+.|...|...++..|.++..|..++.+-.+.|+...|...++++.-.+|.++..|..
T Consensus       679 k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle  758 (913)
T KOG0495|consen  679 KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE  758 (913)
T ss_pred             HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618          214 MGISYANQGMYEESVRYYVRALAMNPKADNAWQ  246 (265)
Q Consensus       214 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  246 (265)
                      ....-.+.|+.+.|...+.++++..|++...|.
T Consensus       759 ~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa  791 (913)
T KOG0495|consen  759 SIRMELRAGNKEQAELLMAKALQECPSSGLLWA  791 (913)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH
Confidence            555555555555555555555555555544443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.87  E-value=6e-20  Score=134.79  Aligned_cols=191  Identities=18%  Similarity=0.096  Sum_probs=123.2

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCCh---HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHH---HHhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENS---EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE---VLLSLG   82 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la   82 (265)
                      .++..|..++..|++++|+..+++++..+|.++   .+++.+|.++...|++++|+..++++++..|+++.   +++.+|
T Consensus        35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g  114 (235)
T TIGR03302        35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRG  114 (235)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHH
Confidence            457788888888888888888888888888765   57788888888888888888888888888887765   677777


Q ss_pred             hhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 024618           83 VSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIES  162 (265)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  162 (265)
                      .++....                       +......|++++|++.+++++..+|++...+..+..+....+    .   
T Consensus       115 ~~~~~~~-----------------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~---  164 (235)
T TIGR03302       115 LSNYNQI-----------------------DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R---  164 (235)
T ss_pred             HHHHHhc-----------------------ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H---
Confidence            7776540                       001122244445555555555555554433322211111000    0   


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618          163 FQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY---VRAWANMGISYANQGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  239 (265)
                                .......+|.++...|++.+|+..+++++...|+.   +.+++.+|.++..+|++++|..+++......|
T Consensus       165 ----------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       165 ----------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             ----------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence                      01123456667777777777777777777765543   45677777777777777777777666655544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.87  E-value=5.4e-20  Score=144.43  Aligned_cols=228  Identities=17%  Similarity=0.154  Sum_probs=188.8

Q ss_pred             CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--------CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCC--
Q 024618           37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--------EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHP--  106 (265)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--  106 (265)
                      .|.-..+...++..|...|++++|+..++++++.        .|.-......+|.+|..++++.+|+..|++++.+..  
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            3555567777999999999999999999999998        555556666799999999999999999999998533  


Q ss_pred             ---CCCCCc------hhhhhhhhchHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618          107 ---KYGTIA------PPELSDSLYYADVARLFVEAARMS--------PEDADVHIVLGVLYNLSRQYDKAIESFQTALKL  169 (265)
Q Consensus       107 ---~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  169 (265)
                         +++...      +..|...|++++|..++++++++.        |.-...+..++.++...+++++|..++++++++
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence               333222      778899999999999999998763        233456788899999999999999999999876


Q ss_pred             C--------CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC--------CcchhhHHHHHHHHHhcCCcHHHHHHHHH
Q 024618          170 K--------PQDYSLWNKLGATQANSVQSADAILAYQRALDLK--------PNYVRAWANMGISYANQGMYEESVRYYVR  233 (265)
Q Consensus       170 ~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  233 (265)
                      .        +.-+....++|.+|..+|++++|.+.+++++...        +.....+..+|..+.+.+++.+|...|.+
T Consensus       355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence            2        2336789999999999999999999999999874        22345778899999999999999999998


Q ss_pred             HHhc----CCC---CchhHHHHHHHHHHhCCccccccc
Q 024618          234 ALAM----NPK---ADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       234 a~~~----~~~---~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      +..+    .|+   -...+.+|+.+|..+|++++|+++
T Consensus       435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~  472 (508)
T KOG1840|consen  435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEEL  472 (508)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHH
Confidence            8765    333   346788999999999999999864

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.87  E-value=1.1e-19  Score=130.92  Aligned_cols=217  Identities=18%  Similarity=0.207  Sum_probs=193.4

Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc--------hhhh
Q 024618           45 RLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA--------PPEL  116 (265)
Q Consensus        45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~~~  116 (265)
                      +..|.-+.-.++.++|+..|..+++.+|...+++..+|..+...|+.+.|+..-+..+. .|+.+..-        +.-|
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy  117 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY  117 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence            44566777888999999999999999999999999999999999999999998766554 45544322        8889


Q ss_pred             hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHhhcCcH
Q 024618          117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD-----YSLWNKLGATQANSVQSA  191 (265)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~  191 (265)
                      +..|-++.|...|.........-..+...+..+|-...+|++|++.-++..++.+..     +..++.++..+....+.+
T Consensus       118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d  197 (389)
T COG2956         118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD  197 (389)
T ss_pred             HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence            999999999999999988666667899999999999999999999999999988765     456888899999999999


Q ss_pred             HHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhCCccccc
Q 024618          192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA-DNAWQYLRISLRYAGRYPNRG  262 (265)
Q Consensus       192 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~  262 (265)
                      .|+..+.++++.+|+...+-..+|.++...|+|+.|++.++.+++.+|+. +.+...|..+|.++|+.++..
T Consensus       198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~  269 (389)
T COG2956         198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL  269 (389)
T ss_pred             HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999999999999999999999999999999999999999987 577888999999999987754

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.86  E-value=2.7e-19  Score=149.50  Aligned_cols=249  Identities=14%  Similarity=0.012  Sum_probs=158.4

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHH
Q 024618           16 ELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL   95 (265)
Q Consensus        16 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~   95 (265)
                      .+...|+.++|+..+++++...|........+|.++...|++++|++.|+++++.+|+++.++..++..+...++.++|+
T Consensus        77 l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl  156 (822)
T PRK14574         77 IAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL  156 (822)
T ss_pred             HHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence            33334444444444444441112222233334668888889999999999999999988888888888888889999999


Q ss_pred             HHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHH----------------------------
Q 024618           96 KYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIV----------------------------  145 (265)
Q Consensus        96 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------------------  145 (265)
                      ..++++...+|......  +.++...++..+|+..++++++.+|++..++..                            
T Consensus       157 ~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~  236 (822)
T PRK14574        157 KQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAE  236 (822)
T ss_pred             HHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHH
Confidence            99988888888855544  333334556656888888888888877553332                            


Q ss_pred             --------------------------------------------------------------------------------
Q 024618          146 --------------------------------------------------------------------------------  145 (265)
Q Consensus       146 --------------------------------------------------------------------------------  145 (265)
                                                                                                      
T Consensus       237 ~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~  316 (822)
T PRK14574        237 HYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE  316 (822)
T ss_pred             HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ----------------HHHHHHHccCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618          146 ----------------LGVLYNLSRQYDKAIESFQTALKLKP------QDYSLWNKLGATQANSVQSADAILAYQRALDL  203 (265)
Q Consensus       146 ----------------l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  203 (265)
                                      .|..|+..+++++|+.+|.+++...|      .+......|-..+...+++++|..++++....
T Consensus       317 ~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~  396 (822)
T PRK14574        317 AMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ  396 (822)
T ss_pred             HhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence                            33334444444444444444443321      11111234445555666666666666665553


Q ss_pred             CC---------------cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          204 KP---------------NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       204 ~~---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      .|               +...+...++.++...|+..+|.+.+++.+...|.++..+..+|.++...|...+|...
T Consensus       397 ~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~  472 (822)
T PRK14574        397 TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQE  472 (822)
T ss_pred             CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            33               12244556777777778888888888888888888888888888888887777776643

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.86  E-value=2.8e-20  Score=124.87  Aligned_cols=128  Identities=15%  Similarity=0.098  Sum_probs=120.0

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC
Q 024618          126 ARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP  205 (265)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  205 (265)
                      ..+++++++.+|++   +..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46788899988875   567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhC
Q 024618          206 NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG  256 (265)
Q Consensus       206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  256 (265)
                      +++.+++.+|.++..+|++++|+..|+++++..|+++..+..++.+...++
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988876653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.86  E-value=3e-19  Score=131.13  Aligned_cols=183  Identities=14%  Similarity=0.079  Sum_probs=147.4

Q ss_pred             CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH---HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCch
Q 024618           37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL---EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAP  113 (265)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  113 (265)
                      ++..+..++.+|..++..|++++|+..+++++...|+++   .+++.+|.++...|++++|+..++++++..|+++    
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----  104 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP----  104 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC----
Confidence            345678999999999999999999999999999999875   5789999999999999999988888888877643    


Q ss_pred             hhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024618          114 PELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS--------RQYDKAIESFQTALKLKPQDYSLWNKLGATQA  185 (265)
Q Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  185 (265)
                                              ....+++.+|.++...        |++++|+..+++++..+|++...+..+..+..
T Consensus       105 ------------------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~  160 (235)
T TIGR03302       105 ------------------------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY  160 (235)
T ss_pred             ------------------------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence                                    2234567777777665        88999999999999999998766543332221


Q ss_pred             hhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHhCCccccc
Q 024618          186 NSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA---DNAWQYLRISLRYAGRYPNRG  262 (265)
Q Consensus       186 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~  262 (265)
                      ..+    .             .......+|.++...|++.+|+..++++++..|+.   +.++..+|.++..+|++++|.
T Consensus       161 ~~~----~-------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~  223 (235)
T TIGR03302       161 LRN----R-------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ  223 (235)
T ss_pred             HHH----H-------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence            111    0             11234578999999999999999999999997765   479999999999999999998


Q ss_pred             cc
Q 024618          263 DI  264 (265)
Q Consensus       263 ~~  264 (265)
                      ++
T Consensus       224 ~~  225 (235)
T TIGR03302       224 DA  225 (235)
T ss_pred             HH
Confidence            65

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=3.7e-19  Score=132.24  Aligned_cols=251  Identities=15%  Similarity=0.082  Sum_probs=204.3

Q ss_pred             hHHHHHcCChHH--HHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618           14 GQELFRKGLLSE--AVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ   91 (265)
Q Consensus        14 ~~~~~~~~~~~~--A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   91 (265)
                      +......++...  +..++-.....-|++...+..+|.+++..|++++|+..|+++..++|.+....-..|..+...|++
T Consensus       203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~  282 (564)
T KOG1174|consen  203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGC  282 (564)
T ss_pred             HHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCH
Confidence            333444444444  444555556677999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618           92 AAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK  168 (265)
Q Consensus        92 ~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  168 (265)
                      +.-.......+.........|   +..++..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..
T Consensus       283 e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~  362 (564)
T KOG1174|consen  283 EQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM  362 (564)
T ss_pred             hhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence            998888888887765444333   88899999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhhcCcHHHH------------------------------------HHHHHHHhcCCcchhhHH
Q 024618          169 LKPQDYSLWNKLGATQANSVQSADAI------------------------------------LAYQRALDLKPNYVRAWA  212 (265)
Q Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~~~A~------------------------------------~~~~~~~~~~~~~~~~~~  212 (265)
                      +.|...+.|..+-.+|...|.+.+|.                                    +++++++.+.|....+-.
T Consensus       363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~  442 (564)
T KOG1174|consen  363 LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN  442 (564)
T ss_pred             cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH
Confidence            99999988888888888877766654                                    555555666666666667


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      .++.++...|+++.++..+++.+...|+ ...+..||.++...+.+++|.+.|
T Consensus       443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y  494 (564)
T KOG1174|consen  443 LIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYY  494 (564)
T ss_pred             HHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHH
Confidence            7777777777777777777777777665 456667777777777777766543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.84  E-value=2e-18  Score=137.16  Aligned_cols=237  Identities=18%  Similarity=0.160  Sum_probs=199.7

Q ss_pred             CCcchhhhHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618            7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKN-PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH   85 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   85 (265)
                      +...|..+..+...++.+.|....+++++.+ .+++.+|..++.+....+++.+|+.+.+.++.-.|+|.........+-
T Consensus       478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~  557 (799)
T KOG4162|consen  478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE  557 (799)
T ss_pred             chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence            3456788999999999999999999999995 567899999999999999999999999999999888655444444444


Q ss_pred             hhhhhHHHHHHHHHHHHhcC--------------------------------------------------------CCC-
Q 024618           86 TNELEQAAALKYLYGWLRHH--------------------------------------------------------PKY-  108 (265)
Q Consensus        86 ~~~~~~~~A~~~~~~~~~~~--------------------------------------------------------~~~-  108 (265)
                      ...++.++|+..+...+..-                                                        |.. 
T Consensus       558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~  637 (799)
T KOG4162|consen  558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST  637 (799)
T ss_pred             hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence            44455555544433222211                                                        100 


Q ss_pred             -----CCCc----------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024618          109 -----GTIA----------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD  173 (265)
Q Consensus       109 -----~~~~----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  173 (265)
                           ...+          +..+...+..+++..++.++-+++|..+..++..|.++...|++.+|.+.|..++.++|++
T Consensus       638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h  717 (799)
T KOG4162|consen  638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH  717 (799)
T ss_pred             ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence                 0000          5567777888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCcHHHHH--HHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch
Q 024618          174 YSLWNKLGATQANSVQSADAIL--AYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN  243 (265)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  243 (265)
                      +.....+|.++...|+..-|..  .+..+++.+|.++++|+.+|.++.+.|+.++|.++|..++++.+.+|-
T Consensus       718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            9999999999999999888888  999999999999999999999999999999999999999999888763

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.84  E-value=1.3e-18  Score=146.41  Aligned_cols=246  Identities=12%  Similarity=0.057  Sum_probs=149.1

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHh-----------------------
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE-----------------------   69 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------------------   69 (265)
                      +...|.+.|++++|..+|++..   +.+...|..+...|.+.|++++|+..|++..+                       
T Consensus       265 Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~  341 (697)
T PLN03081        265 LIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL  341 (697)
T ss_pred             HHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence            3445555555555555555442   23445555555555555555555555555544                       


Q ss_pred             ------------cC-CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhc-
Q 024618           70 ------------AE-PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARM-  135 (265)
Q Consensus        70 ------------~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-  135 (265)
                                  .. +.+..++..+...|.+.|++++|...|++..+.+..........+...|+.++|+++|+++.+. 
T Consensus       342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g  421 (697)
T PLN03081        342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG  421 (697)
T ss_pred             HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                        32 2233344444445555555555555555443321111111144555556666666666655543 


Q ss_pred             -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHH
Q 024618          136 -SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ--DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA  212 (265)
Q Consensus       136 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  212 (265)
                       .|+ ...+..+...+...|..++|..+|+.+.+..+-  +...+..+...+.+.|++++|.+.+++. ...|+ ..+|.
T Consensus       422 ~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~  498 (697)
T PLN03081        422 VAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWA  498 (697)
T ss_pred             CCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHH
Confidence             232 444555555556666666666666665543221  2345666777777777888887777653 22333 56788


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      .+...+...|+.+.|...+++.+++.|++...+..++.+|.+.|++++|.++
T Consensus       499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v  550 (697)
T PLN03081        499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV  550 (697)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence            8888888999999999999999999999999999999999999999998765

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.9e-19  Score=133.53  Aligned_cols=234  Identities=18%  Similarity=0.143  Sum_probs=204.0

Q ss_pred             CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHH------------hcC---
Q 024618            7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAH------------EAE---   71 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~---   71 (265)
                      .+.|..++..+...|+|++|....++.++.+|..+......+.++..+++..+|.+.++..-            .+.   
T Consensus        83 a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~  162 (486)
T KOG0550|consen   83 ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSH  162 (486)
T ss_pred             hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccc
Confidence            45677899999999999999999999999999999999999999999988888876665221            011   


Q ss_pred             ---CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCH-----
Q 024618           72 ---PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDA-----  140 (265)
Q Consensus        72 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----  140 (265)
                         |....+...-+.|+...|++++|...--..+++++.+...+   +.++....+.+.++..|++++.++|+..     
T Consensus       163 s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~  242 (486)
T KOG0550|consen  163 SREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA  242 (486)
T ss_pred             cCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence               22334566678899999999999999999999999988777   8899999999999999999999999764     


Q ss_pred             -------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh
Q 024618          141 -------DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD----YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR  209 (265)
Q Consensus       141 -------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  209 (265)
                             ..+..-|.-.++.|++..|.+.|..++.++|++    ...+.+++.+....|+..+|+..++.+++++|....
T Consensus       243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik  322 (486)
T KOG0550|consen  243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK  322 (486)
T ss_pred             hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence                   356677888999999999999999999999987    456888999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          210 AWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      ++...|.|+..+++|++|++.|+++++...+
T Consensus       323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999998666

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.82  E-value=2.1e-17  Score=141.88  Aligned_cols=250  Identities=12%  Similarity=0.058  Sum_probs=133.7

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC-CChHHHHhhhhhhhhhhhh
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNP-ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAE-PTNLEVLLSLGVSHTNELE   90 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~   90 (265)
                      +...+.+.|++++|..+|+++.+... .+...|..+...|.+.|++++|+..|..+.+.. ..+..++..+...+.+.|+
T Consensus       478 LI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~  557 (1060)
T PLN03218        478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA  557 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence            34455556666666666666555432 245555556666666666666666666654432 1134455555566666666


Q ss_pred             HHHHHHHHHHHHhc----CCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618           91 QAAALKYLYGWLRH----HPKYGTIA--PPELSDSLYYADVARLFVEAARMS-PEDADVHIVLGVLYNLSRQYDKAIESF  163 (265)
Q Consensus        91 ~~~A~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  163 (265)
                      +++|.+.+......    .|+.....  ...+.+.|++++|.++|+.+.+.. +.+...|..+...|.+.|++++|+..|
T Consensus       558 ~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf  637 (1060)
T PLN03218        558 VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY  637 (1060)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence            66666666655432    22211111  445555666666666666665543 233455555666666666666666666


Q ss_pred             HHHHhh--CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC-CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc--C
Q 024618          164 QTALKL--KPQDYSLWNKLGATQANSVQSADAILAYQRALDLK-PNYVRAWANMGISYANQGMYEESVRYYVRALAM--N  238 (265)
Q Consensus       164 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~  238 (265)
                      +++.+.  .|+ ...+..+...+.+.|++++|.+.++++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.  .
T Consensus       638 ~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~  716 (1060)
T PLN03218        638 DDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR  716 (1060)
T ss_pred             HHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            655543  222 3445555555555555555555555555432 123445555555556666666666665555432  2


Q ss_pred             CCCchhHHHHHHHHHHhCCccccccc
Q 024618          239 PKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      |+ ...|..+...|.+.|+.++|.++
T Consensus       717 Pd-vvtyN~LI~gy~k~G~~eeAlel  741 (1060)
T PLN03218        717 PT-VSTMNALITALCEGNQLPKALEV  741 (1060)
T ss_pred             CC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence            32 44455555555555555555543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.82  E-value=4.5e-18  Score=132.84  Aligned_cols=245  Identities=14%  Similarity=0.106  Sum_probs=214.5

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      .+|..+.-.+..++|...++..+.+++..|++++.+...|..+..+|+-++|..+...++..++.+...|..+|.++...
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT  165 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  165 (265)
                      .+|++|+++|..++...|++..++   +.+..+.++++.....-.+.++..|..-..|...+..+.-.|++..|...++.
T Consensus        89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e  168 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE  168 (700)
T ss_pred             hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888   77888899999999999999999999999999999999999999999999988


Q ss_pred             HHhhC---CCC-----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          166 ALKLK---PQD-----YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       166 ~~~~~---~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      ..+..   |+.     .........+..+.|.+++|.+.+..--..--+........|.++.++|+.++|...|...+..
T Consensus       169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r  248 (700)
T KOG1156|consen  169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER  248 (700)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence            87764   322     2345555667778888888888776543222233445566899999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHH
Q 024618          238 NPKADNAWQYLRISLR  253 (265)
Q Consensus       238 ~~~~~~~~~~l~~~~~  253 (265)
                      +|++...+..+-.++.
T Consensus       249 nPdn~~Yy~~l~~~lg  264 (700)
T KOG1156|consen  249 NPDNLDYYEGLEKALG  264 (700)
T ss_pred             CchhHHHHHHHHHHHH
Confidence            9999887777666664

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.82  E-value=9.8e-18  Score=118.43  Aligned_cols=126  Identities=20%  Similarity=0.298  Sum_probs=116.8

Q ss_pred             hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HhhcC--cHHHHH
Q 024618          119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQ-ANSVQ--SADAIL  195 (265)
Q Consensus       119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~  195 (265)
                      .++.++++..++++++.+|++...|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            455678888899999999999999999999999999999999999999999999999999999975 67777  599999


Q ss_pred             HHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618          196 AYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA  244 (265)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  244 (265)
                      .++++++.+|+++.++..+|.++...|++++|+.+++++++..|.+..-
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            9999999999999999999999999999999999999999998876543

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.81  E-value=7.3e-17  Score=138.58  Aligned_cols=251  Identities=11%  Similarity=-0.009  Sum_probs=209.8

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC-ChHHHHhhhhhhhhhhhh
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNP-ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP-TNLEVLLSLGVSHTNELE   90 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~   90 (265)
                      .-..+...|++++|..+++++.+... .+...+..+...|.+.|+.++|..+|+++.+... .+...|..+...|.+.|+
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~  522 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ  522 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence            34566788999999999999887653 3567888899999999999999999999987653 367888999999999999


Q ss_pred             HHHHHHHHHHHHhcC--CCCCCCc--hhhhhhhhchHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHccCHHHHHHH
Q 024618           91 QAAALKYLYGWLRHH--PKYGTIA--PPELSDSLYYADVARLFVEAARM----SPEDADVHIVLGVLYNLSRQYDKAIES  162 (265)
Q Consensus        91 ~~~A~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~  162 (265)
                      +++|+..|.......  |+.....  ...+.+.|++++|.+++.++...    .|+ ...+..+...|.+.|++++|.+.
T Consensus       523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~el  601 (1060)
T PLN03218        523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEV  601 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999887643  3322211  77788899999999999998753    454 67888889999999999999999


Q ss_pred             HHHHHhhC-CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc--CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC-
Q 024618          163 FQTALKLK-PQDYSLWNKLGATQANSVQSADAILAYQRALDL--KPNYVRAWANMGISYANQGMYEESVRYYVRALAMN-  238 (265)
Q Consensus       163 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-  238 (265)
                      |+++.+.+ +.++..|..+...|.+.|++++|+..|++....  .|+ ...+..+...+.+.|++++|.+.++.+.+.. 
T Consensus       602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~  680 (1060)
T PLN03218        602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGI  680 (1060)
T ss_pred             HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            99998875 456788999999999999999999999998876  344 5788889999999999999999999998864 


Q ss_pred             CCCchhHHHHHHHHHHhCCcccccccC
Q 024618          239 PKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      +-+..++..+..+|.+.|++++|.++|
T Consensus       681 ~pd~~tynsLI~ay~k~G~~eeA~~lf  707 (1060)
T PLN03218        681 KLGTVSYSSLMGACSNAKNWKKALELY  707 (1060)
T ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            234678899999999999999998764

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.81  E-value=7.4e-19  Score=118.02  Aligned_cols=107  Identities=16%  Similarity=0.031  Sum_probs=92.7

Q ss_pred             hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHH
Q 024618          115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI  194 (265)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  194 (265)
                      .+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+
T Consensus        33 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi  112 (144)
T PRK15359         33 ASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR  112 (144)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence            33444445555566666777788889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618          195 LAYQRALDLKPNYVRAWANMGISYANQ  221 (265)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~l~~~~~~~  221 (265)
                      ..|++++...|+++..+..+|.+....
T Consensus       113 ~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        113 EAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            999999999999999998888876544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.80  E-value=2.4e-17  Score=128.63  Aligned_cols=202  Identities=18%  Similarity=0.129  Sum_probs=132.6

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT   86 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   86 (265)
                      +..+|..+...|+.+.+...+.++.+..|.+   .+.....+.++...|++++|...++++++.+|++..++.. +..+.
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~   87 (355)
T cd05804           9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAF   87 (355)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHH
Confidence            3445555555566666655555555555433   2344445555666666666666666666666665544443 33333


Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618           87 NELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA  166 (265)
Q Consensus        87 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  166 (265)
                      ..|+...+                           ...+...+.......|........+|.++...|++++|+..++++
T Consensus        88 ~~~~~~~~---------------------------~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a  140 (355)
T cd05804          88 GLGDFSGM---------------------------RDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA  140 (355)
T ss_pred             HhcccccC---------------------------chhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33322222                           222333333333445666777778888888888888888888888


Q ss_pred             HhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch----hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618          167 LKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV----RAWANMGISYANQGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       167 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  239 (265)
                      ++.+|+++.++..+|.++...|++++|+..+++++...|.++    ..+..+|.++...|++++|+..+++++...|
T Consensus       141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            888888888888888888888888888888888888776433    2455788888888888888888888876655

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.79  E-value=8.5e-18  Score=131.10  Aligned_cols=197  Identities=17%  Similarity=0.077  Sum_probs=146.1

Q ss_pred             CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCch
Q 024618           37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAP  113 (265)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  113 (265)
                      +|+.+.++..+|.++...|+.+.+...+.++.+..|.+   .+.....+.++...|++++|...                
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~----------------   65 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALAL----------------   65 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHH----------------
Confidence            57777777777777777777777777777777665543   33445555555556665555554                


Q ss_pred             hhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC
Q 024618          114 PELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR----QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ  189 (265)
Q Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  189 (265)
                                     +++++..+|++..++.. +..+...|    ....+...+.......|........+|.++...|+
T Consensus        66 ---------------~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~  129 (355)
T cd05804          66 ---------------LEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ  129 (355)
T ss_pred             ---------------HHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence                           45555556666655554 44444444    44444444444335567777788889999999999


Q ss_pred             cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHhCCcccccccC
Q 024618          190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN----AWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      +++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|.++.    .+..++.++...|++++|+..|
T Consensus       130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~  209 (355)
T cd05804         130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY  209 (355)
T ss_pred             HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998875432    4567999999999999997653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.79  E-value=2.3e-16  Score=125.56  Aligned_cols=252  Identities=12%  Similarity=0.046  Sum_probs=182.8

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh-
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE-   88 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-   88 (265)
                      .+-+..++...|++++|+..+.+....-++........|.++..+|++++|...|...++.+|++...+..+..+.... 
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~   86 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL   86 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence            4567889999999999999999988888888889999999999999999999999999999999999999888887333 


Q ss_pred             ----hhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 024618           89 ----LEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYAD-VARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE  161 (265)
Q Consensus        89 ----~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  161 (265)
                          .+.+.-...|+......|......  ...+..-..+.. +..++...+..  .-|.++..+-.+|....+..-...
T Consensus        87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~  164 (517)
T PF12569_consen   87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIES  164 (517)
T ss_pred             ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHH
Confidence                356777888998888888765543  222222223333 33344444433  345555555555553333332223


Q ss_pred             HHHHHHhh---------------CCCC--HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCc
Q 024618          162 SFQTALKL---------------KPQD--YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMY  224 (265)
Q Consensus       162 ~~~~~~~~---------------~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  224 (265)
                      .+......               .|..  ..+++.++..|...|++++|+++++++|+..|..++.+...|.++.+.|++
T Consensus       165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~  244 (517)
T PF12569_consen  165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL  244 (517)
T ss_pred             HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence            33332211               0111  134577788888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618          225 EESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       225 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      .+|.++++.+-.+++.+.-.....+..+.+.|+.++|.+
T Consensus       245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~  283 (517)
T PF12569_consen  245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEK  283 (517)
T ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            888888888888888877777777888888888887765

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=1.8e-16  Score=110.80  Aligned_cols=201  Identities=16%  Similarity=0.090  Sum_probs=138.1

Q ss_pred             CChHHHHHHHHHHHHhC------CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHH
Q 024618           21 GLLSEAVLALEAEVLKN------PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAA   94 (265)
Q Consensus        21 ~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A   94 (265)
                      .+.++-+++....+...      |+....+-.+..+....|+.+-|..++++.....|.+..+-...|..+...|++++|
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A  105 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA  105 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence            44556666666555432      222334445566667777888888888887777788877777778888888888888


Q ss_pred             HHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024618           95 LKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKP  171 (265)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  171 (265)
                      +++|+..++.+|.+..+.   ..+...+|+.-+|++.+...++..+.|.++|..++.+|...|++++|.-++++++-+.|
T Consensus       106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P  185 (289)
T KOG3060|consen  106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP  185 (289)
T ss_pred             HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence            888877777777766665   45555666666777777777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHhhcC---cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618          172 QDYSLWNKLGATQANSVQ---SADAILAYQRALDLKPNYVRAWANMGISYANQ  221 (265)
Q Consensus       172 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  221 (265)
                      .++..+..+|.+++-+|.   ..-|.++|.++++++|.+..+++.+-.+....
T Consensus       186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l  238 (289)
T KOG3060|consen  186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL  238 (289)
T ss_pred             CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence            777777777777666553   44567777777777776666666655554433

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.78  E-value=8.1e-17  Score=135.72  Aligned_cols=249  Identities=14%  Similarity=0.032  Sum_probs=160.0

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCC------------------------------------ChHHHHHHHHHHh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPE------------------------------------NSEGWRLLGIAHA   52 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~   52 (265)
                      .|-.....+.+.|++++|+.+|+++.+..+.                                    +..++..+...|.
T Consensus       191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~  270 (697)
T PLN03081        191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS  270 (697)
T ss_pred             eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence            3445666777788888888888887654321                                    1123344566777


Q ss_pred             hcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhc--CCCCCCCc--hhhhhhhhchHHHHHH
Q 024618           53 ENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRH--HPKYGTIA--PPELSDSLYYADVARL  128 (265)
Q Consensus        53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~a~~~  128 (265)
                      +.|++++|...|++..   +.+..+|..+...|...|++++|+..|++..+.  .|+.....  ...+...|++++|.+.
T Consensus       271 k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i  347 (697)
T PLN03081        271 KCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA  347 (697)
T ss_pred             HCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence            7888888888877653   346677888888888888888888888877653  23322111  5556666777777777


Q ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc--CC
Q 024618          129 FVEAARMS-PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL--KP  205 (265)
Q Consensus       129 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~  205 (265)
                      +..+.+.. +.+..++..+...|.+.|++++|...|+++.+   .+..+|..+...|.+.|+.++|++.|++..+.  .|
T Consensus       348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P  424 (697)
T PLN03081        348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP  424 (697)
T ss_pred             HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            77666654 34455666677777777777777777766543   24456777777777777777777777776653  23


Q ss_pred             cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHhCCccccccc
Q 024618          206 NYVRAWANMGISYANQGMYEESVRYYVRALAMNPK--ADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      + ..++..+...+.+.|..++|.++|+.+.+..+-  +...+..+...+.+.|+.++|.++
T Consensus       425 d-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~  484 (697)
T PLN03081        425 N-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM  484 (697)
T ss_pred             C-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence            3 345555666666777777777777766543221  134556666677777777666543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.78  E-value=3.7e-17  Score=109.49  Aligned_cols=121  Identities=18%  Similarity=0.194  Sum_probs=115.0

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618          127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN  206 (265)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  206 (265)
                      ..+++++..+|++......+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618          207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY  247 (265)
Q Consensus       207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  247 (265)
                      ++..++.+|.++...|++++|+..++++++.+|++......
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  124 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSEL  124 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence            99999999999999999999999999999999998775443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=1.9e-16  Score=110.63  Aligned_cols=185  Identities=15%  Similarity=0.131  Sum_probs=167.7

Q ss_pred             cCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q 024618           70 AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVL  146 (265)
Q Consensus        70 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  146 (265)
                      ..|+...++-....+....|+.+.|..++++.....|.+....   +..+...|.+++|+++|+..++-+|.+..++...
T Consensus        47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK  126 (289)
T KOG3060|consen   47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK  126 (289)
T ss_pred             cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence            4566667777778888899999999999999999889887766   8889999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC---C
Q 024618          147 GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG---M  223 (265)
Q Consensus       147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~  223 (265)
                      ..+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+.|.++-.+..+|.+++-+|   +
T Consensus       127 lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN  206 (289)
T KOG3060|consen  127 LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN  206 (289)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988877   5


Q ss_pred             cHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618          224 YEESVRYYVRALAMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       224 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  254 (265)
                      .+-|.++|.++++++|.+..+++.+-.+-..
T Consensus       207 ~~~arkyy~~alkl~~~~~ral~GI~lc~~~  237 (289)
T KOG3060|consen  207 LELARKYYERALKLNPKNLRALFGIYLCGSA  237 (289)
T ss_pred             HHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence            7789999999999999888888776555443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.77  E-value=5e-16  Score=121.61  Aligned_cols=169  Identities=17%  Similarity=0.186  Sum_probs=107.0

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ   91 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   91 (265)
                      -+|..+...|+-++|......++..++.+...|..+|.++....+|++|+++|+.|+.++|+|..++..++....+++++
T Consensus        46 mkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~  125 (700)
T KOG1156|consen   46 MKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY  125 (700)
T ss_pred             hccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence            45777777777777777777777777777777777777777777777777777777777777777776666666666666


Q ss_pred             HHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcC---CC---------------------------
Q 024618           92 AAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMS---PE---------------------------  138 (265)
Q Consensus        92 ~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~---~~---------------------------  138 (265)
                      +.....-.+.++..|.....|   +......|++..|...++...+..   |.                           
T Consensus       126 ~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al  205 (700)
T KOG1156|consen  126 EGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL  205 (700)
T ss_pred             hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence            666666666666655554444   444444455554444444333322   11                           


Q ss_pred             ------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024618          139 ------------DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL  180 (265)
Q Consensus       139 ------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  180 (265)
                                  ........+.++..+++.++|...+...+..+|++...+..+
T Consensus       206 e~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l  259 (700)
T KOG1156|consen  206 EHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGL  259 (700)
T ss_pred             HHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHH
Confidence                        111223345566666777777777777777777665444333

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.77  E-value=6.9e-17  Score=113.66  Aligned_cols=179  Identities=21%  Similarity=0.215  Sum_probs=132.6

Q ss_pred             cCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHH
Q 024618           54 NDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFV  130 (265)
Q Consensus        54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~  130 (265)
                      ..+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|++....   +......|++.+|+..+.
T Consensus        46 ~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~r  124 (257)
T COG5010          46 MRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLR  124 (257)
T ss_pred             HHhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            334455777777777888988888 8888888888888888888888777777665444   666677777777777777


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh
Q 024618          131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRA  210 (265)
Q Consensus       131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  210 (265)
                      ++....|+++.+|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+..+
T Consensus       125 kA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v  204 (257)
T COG5010         125 KAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRV  204 (257)
T ss_pred             HHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777666666777


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHH
Q 024618          211 WANMGISYANQGMYEESVRYYVR  233 (265)
Q Consensus       211 ~~~l~~~~~~~g~~~~A~~~~~~  233 (265)
                      ..+++.+...+|++++|.....+
T Consensus       205 ~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         205 RQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHHHHhhcCChHHHHhhccc
Confidence            77777777777777777666544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.76  E-value=3.2e-16  Score=110.31  Aligned_cols=182  Identities=19%  Similarity=0.154  Sum_probs=167.8

Q ss_pred             HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHH
Q 024618           19 RKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYL   98 (265)
Q Consensus        19 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~   98 (265)
                      ...+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+..++..+|......|++..|+..+
T Consensus        45 ~~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~  123 (257)
T COG5010          45 AMRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVL  123 (257)
T ss_pred             HHHhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHH
Confidence            3344455666677777889999999 999999999999999999999999999999999989999999999999999999


Q ss_pred             HHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024618           99 YGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYS  175 (265)
Q Consensus        99 ~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  175 (265)
                      .++....|++...+   |.++.+.|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+..
T Consensus       124 rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~  203 (257)
T COG5010         124 RKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR  203 (257)
T ss_pred             HHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence            99999999999888   999999999999999999999999999999999999999999999999999999998888999


Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618          176 LWNKLGATQANSVQSADAILAYQRAL  201 (265)
Q Consensus       176 ~~~~l~~~~~~~~~~~~A~~~~~~~~  201 (265)
                      +..+++.+....|++++|.....+-+
T Consensus       204 v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         204 VRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHHHHHHHhhcCChHHHHhhccccc
Confidence            99999999999999999988766543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.76  E-value=3.3e-16  Score=110.69  Aligned_cols=154  Identities=19%  Similarity=0.162  Sum_probs=118.9

Q ss_pred             hHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHH
Q 024618           14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAA   93 (265)
Q Consensus        14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~   93 (265)
                      +-.|+..|+++......++..  +|..         -+...++.++++..++++++.+|++++.|..+|.++...|++++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~   91 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN   91 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence            456777888777544432221  1211         11136677888888899999999999999999888888888777


Q ss_pred             HHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHhhC
Q 024618           94 ALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLY-NLSRQ--YDKAIESFQTALKLK  170 (265)
Q Consensus        94 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~  170 (265)
                      |+..|+                               +++++.|+++.++..+|.++ ...|+  +++|...++++++.+
T Consensus        92 A~~a~~-------------------------------~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d  140 (198)
T PRK10370         92 ALLAYR-------------------------------QALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD  140 (198)
T ss_pred             HHHHHH-------------------------------HHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence            765554                               55555677889999999874 67777  589999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh
Q 024618          171 PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR  209 (265)
Q Consensus       171 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  209 (265)
                      |+++.++..+|..+...|++++|+..|+++++..|.+..
T Consensus       141 P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        141 ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999999998887643

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.75  E-value=5.1e-15  Score=109.93  Aligned_cols=249  Identities=15%  Similarity=0.118  Sum_probs=183.9

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-hHHHHhhhhhhhhhhhh
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT-NLEVLLSLGVSHTNELE   90 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~   90 (265)
                      ..|..-+..|+|.+|.+...+.-+..+.....+..-+.+..+.|+++.+-.++.++-+..++ ...+...++.+....|+
T Consensus        89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d  168 (400)
T COG3071          89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD  168 (400)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence            34556666777888777777766555555556666677777777777777777777776333 34566666777777777


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhc--------------------------------
Q 024618           91 QAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARM--------------------------------  135 (265)
Q Consensus        91 ~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~--------------------------------  135 (265)
                      ++.|.....++++..|.++...   ..+|...|++.+....+.+.-+.                                
T Consensus       169 ~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL  248 (400)
T COG3071         169 YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL  248 (400)
T ss_pred             chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            7777777777777777777665   66666667666665555443221                                


Q ss_pred             ----------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC
Q 024618          136 ----------SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP  205 (265)
Q Consensus       136 ----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  205 (265)
                                -.+++.+...++.-+...|+.++|.+....+++..-+. .....+  -...-++...=++..++.+...|
T Consensus       249 ~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~--~~l~~~d~~~l~k~~e~~l~~h~  325 (400)
T COG3071         249 KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLI--PRLRPGDPEPLIKAAEKWLKQHP  325 (400)
T ss_pred             HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHH--hhcCCCCchHHHHHHHHHHHhCC
Confidence                      12345667777888899999999999999999875442 322222  23456888888899999999999


Q ss_pred             cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          206 NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      +++..+..+|..+.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.
T Consensus       326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~  383 (400)
T COG3071         326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQV  383 (400)
T ss_pred             CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHH
Confidence            99999999999999999999999999999998887 66778899999999999887653

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.75  E-value=2.5e-16  Score=124.90  Aligned_cols=216  Identities=14%  Similarity=0.173  Sum_probs=193.5

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE   90 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   90 (265)
                      ..+|..+...|-...|+.++++.        ..|-....||...|+..+|.....+-++ .|+++..|..+|.+.....-
T Consensus       402 ~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~  472 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSL  472 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHH
Confidence            35789999999999999999976        5677788999999999999999999999 77789999999999988888


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024618           91 QAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK  170 (265)
Q Consensus        91 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  170 (265)
                      +++|.+..+..-..   -...++......+++.++.+.++..++++|-....|+.+|.+..+.++++.|.+.|..++...
T Consensus       473 yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~  549 (777)
T KOG1128|consen  473 YEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE  549 (777)
T ss_pred             HHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence            88888877655443   111224445567999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC
Q 024618          171 PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMN  238 (265)
Q Consensus       171 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  238 (265)
                      |++..+|.+++..|.+.++..+|...++++++.+-.+..+|-+.-.+..+.|.+++|+..+.+.+.+.
T Consensus       550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999998889999999999999999999999999998764

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.75  E-value=2.3e-16  Score=128.79  Aligned_cols=233  Identities=16%  Similarity=0.156  Sum_probs=192.4

Q ss_pred             cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHH
Q 024618           20 KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLY   99 (265)
Q Consensus        20 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~   99 (265)
                      ..+...|...|-++++.+|.-..++..+|.+|...-+...|..+|+++.++++.+..+.-..+..|....+++.|....-
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             HHHhcCCCCCCC-----chhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024618          100 GWLRHHPKYGTI-----APPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY  174 (265)
Q Consensus       100 ~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  174 (265)
                      ..-+..|.....     .|..+...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+.
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence            666665543221     388888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch-------hhHHHHHHHHHhcCCcHHHHHHHHHHHhc-------C-C
Q 024618          175 SLWNKLGATQANSVQSADAILAYQRALDLKPNYV-------RAWANMGISYANQGMYEESVRYYVRALAM-------N-P  239 (265)
Q Consensus       175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------~-~  239 (265)
                      ...+..+.+....|+|.+|+..+...+.......       +.+..++..+...|=+.+|.++++++++.       . -
T Consensus       631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~  710 (1238)
T KOG1127|consen  631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ  710 (1238)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999998887654433       44445555555556666666666666543       2 3


Q ss_pred             CCchhHHHHHHHH
Q 024618          240 KADNAWQYLRISL  252 (265)
Q Consensus       240 ~~~~~~~~l~~~~  252 (265)
                      ++...|..++.+.
T Consensus       711 ~~~~~Wi~asdac  723 (1238)
T KOG1127|consen  711 SDRLQWIVASDAC  723 (1238)
T ss_pred             hhHHHHHHHhHHH
Confidence            3444555555443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.74  E-value=2.8e-16  Score=128.36  Aligned_cols=244  Identities=17%  Similarity=0.194  Sum_probs=198.7

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH--------------------------hhcCcHHHHHHH
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAH--------------------------AENDDDQQAIAA   63 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--------------------------~~~~~~~~A~~~   63 (265)
                      ....|.+......|.+|...+.......- +.+.+..+..++                          ...++...|...
T Consensus       402 ~~akgl~~ie~~~y~Daa~tl~lv~~~s~-nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~a  480 (1238)
T KOG1127|consen  402 QRAKGLAPIEANVYTDAAITLDLVSSLSF-NDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHA  480 (1238)
T ss_pred             hhhcchhHHHHhhchHHHHHHHHHHHhhc-CchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            34556677777888888887776655441 111111111111                          123457789999


Q ss_pred             HHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCH
Q 024618           64 MMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDA  140 (265)
Q Consensus        64 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~  140 (265)
                      |-++++++|....++..+|.+|....+...|..+|+++.++++.+....   +..+.....++.|....-..-+..|...
T Consensus       481 li~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~  560 (1238)
T KOG1127|consen  481 LIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA  560 (1238)
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence            9999999999999999999999999999999999999999999988777   7888999999999998777777666433


Q ss_pred             --HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 024618          141 --DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISY  218 (265)
Q Consensus       141 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  218 (265)
                        ..|..+|..|...++...|+..|+.++..+|.+.+.|..+|.+|...|.+..|++.|.++..++|.+..+.+..+.+.
T Consensus       561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e  640 (1238)
T KOG1127|consen  561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME  640 (1238)
T ss_pred             HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence              456778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618          219 ANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       219 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  254 (265)
                      ..+|+|.+|+..+...+............++.++.+
T Consensus       641 cd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir  676 (1238)
T KOG1127|consen  641 CDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR  676 (1238)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            999999999999999888766655555556655554

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.74  E-value=9.4e-17  Score=115.11  Aligned_cols=119  Identities=22%  Similarity=0.419  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN  220 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  220 (265)
                      +-+..-|.-+...++|.+|+..|.++|+++|.++..|.+.+.+|.++|+++.|++.++.++.++|....+|..||.+|..
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            34555677788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcc
Q 024618          221 QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYP  259 (265)
Q Consensus       221 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  259 (265)
                      +|++++|++.|+++++++|++...+..|..+-.++++.+
T Consensus       162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999998888888888877777665

>PLN03077 Protein ECB2; Provisional

Probab=99.73  E-value=1.3e-15  Score=131.25  Aligned_cols=244  Identities=10%  Similarity=0.007  Sum_probs=182.5

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHh-----------
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLL-----------   79 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------   79 (265)
                      -.+...|.+.|++++|..+|++..+   .+...|..+...|...|+.++|+..|+++....+.+...+.           
T Consensus       428 n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~  504 (857)
T PLN03077        428 NALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGA  504 (857)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhch
Confidence            3456788889999999999987643   35667888888899999999999999998754333332222           


Q ss_pred             ------------------------hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHH
Q 024618           80 ------------------------SLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEA  132 (265)
Q Consensus        80 ------------------------~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~  132 (265)
                                              .+...|.+.|+.++|...|+..    +.+...+   ...+...|+.++|+++|+++
T Consensus       505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M  580 (857)
T PLN03077        505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRM  580 (857)
T ss_pred             HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                                    2335666677777777777665    2222223   66677888888888888887


Q ss_pred             Hhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch
Q 024618          133 ARM--SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKP--QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV  208 (265)
Q Consensus       133 ~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  208 (265)
                      .+.  .|+ ...+..+...+...|.+++|..+|+.+.+..+  .+...+..+..++.+.|++++|.+.+++. ...|+ +
T Consensus       581 ~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~  657 (857)
T PLN03077        581 VESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-P  657 (857)
T ss_pred             HHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-H
Confidence            764  354 44455566677888888888888888874432  23467888888888999999998888875 34454 5


Q ss_pred             hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          209 RAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      .+|..+-..+...|+.+.+....+++++++|++...+..++.+|...|++++|.++
T Consensus       658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~v  713 (857)
T PLN03077        658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV  713 (857)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHH
Confidence            67777777788888899999899999999999999999999999999999988653

>PLN03077 Protein ECB2; Provisional

Probab=99.73  E-value=2e-15  Score=130.21  Aligned_cols=184  Identities=14%  Similarity=0.094  Sum_probs=106.8

Q ss_pred             HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhc-CCCCHH-------------
Q 024618           76 EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARM-SPEDAD-------------  141 (265)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------------  141 (265)
                      .++..+...|.+.|++++|.+.|++..+.+..........+...|+.++|+..|+++... .|+...             
T Consensus       425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~  504 (857)
T PLN03077        425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGA  504 (857)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhch
Confidence            344555566666666666666666554322111111144555666666666666666533 222211             


Q ss_pred             ---------------------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618          142 ---------------------VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA  200 (265)
Q Consensus       142 ---------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  200 (265)
                                           +...+...|.+.|+.++|...|+..    +.+..+|..+...|...|+.++|++.|++.
T Consensus       505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M  580 (857)
T PLN03077        505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRM  580 (857)
T ss_pred             HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                                 1112335556666666666666654    345666777777777777777777777776


Q ss_pred             Hhc--CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHhCCccccccc
Q 024618          201 LDL--KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK--ADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       201 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      .+.  .|+ ..++..+-..+.+.|+.++|..+|+.+.+..+-  +...+..+..++.+.|+.++|.++
T Consensus       581 ~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~  647 (857)
T PLN03077        581 VESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF  647 (857)
T ss_pred             HHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence            653  333 344555556677777777777777777643221  235666677777777777777654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.73  E-value=9.6e-16  Score=127.50  Aligned_cols=204  Identities=10%  Similarity=0.045  Sum_probs=144.5

Q ss_pred             hCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhh
Q 024618           36 KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE  115 (265)
Q Consensus        36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  115 (265)
                      .+|.+..+|..+...+...+++++|+..++.+++..|+....++.+|.++...+++.++.-.  .++...+...      
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~------   97 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL------   97 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc------
Confidence            34777778888888888888888888888888888888888888888888888877777655  5555444332      


Q ss_pred             hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHH
Q 024618          116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL  195 (265)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  195 (265)
                           ++ .+++++...+...+.+..+++.+|.+|-++|+.++|...++++++.+|+++.++.++|..+... +.++|++
T Consensus        98 -----~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~  170 (906)
T PRK14720         98 -----KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT  170 (906)
T ss_pred             -----ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence                 22 4445555555556666667777777777777777777777777777777777777777777666 6666666


Q ss_pred             HHHHHHhc--------------------CCcchhh--------HHHHH------------HHHHhcCCcHHHHHHHHHHH
Q 024618          196 AYQRALDL--------------------KPNYVRA--------WANMG------------ISYANQGMYEESVRYYVRAL  235 (265)
Q Consensus       196 ~~~~~~~~--------------------~~~~~~~--------~~~l~------------~~~~~~g~~~~A~~~~~~a~  235 (265)
                      ++.+++..                    +|.+.+.        ...++            ..|...++|++++..++.++
T Consensus       171 m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL  250 (906)
T PRK14720        171 YLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL  250 (906)
T ss_pred             HHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            66666543                    3443322        11223            67777888999999999999


Q ss_pred             hcCCCCchhHHHHHHHHHH
Q 024618          236 AMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~~  254 (265)
                      +.+|.+..+...++.+|..
T Consensus       251 ~~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        251 EHDNKNNKAREELIRFYKE  269 (906)
T ss_pred             hcCCcchhhHHHHHHHHHH
Confidence            9999998888889888873

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.72  E-value=6.6e-16  Score=101.81  Aligned_cols=110  Identities=14%  Similarity=0.113  Sum_probs=103.2

Q ss_pred             HHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh
Q 024618          131 EAARMS-PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR  209 (265)
Q Consensus       131 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  209 (265)
                      ....+. ++..+..+.+|..+...|++++|...|+-+...+|.++..|+++|.++..+|++++|+..|.+++.++|+++.
T Consensus        25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~  104 (157)
T PRK15363         25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ  104 (157)
T ss_pred             HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence            334456 7778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          210 AWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      +++++|.|++..|+.+.|++.|+.++....+
T Consensus       105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~  135 (157)
T PRK15363        105 APWAAAECYLACDNVCYAIKALKAVVRICGE  135 (157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999998633

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.72  E-value=4.5e-16  Score=129.40  Aligned_cols=195  Identities=11%  Similarity=0.043  Sum_probs=167.9

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH------------
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL------------   75 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------   75 (265)
                      ..+..++..+...+++++|+..++..++..|+.+.+++.+|.++.+.++++++..+  .++...+.+.            
T Consensus        32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i  109 (906)
T PRK14720         32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI  109 (906)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence            34567788888999999999999999999999999999999999999988877666  6666655554            


Q ss_pred             -------HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q 024618           76 -------EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIV  145 (265)
Q Consensus        76 -------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  145 (265)
                             .+++.+|.||-.+|+.++|...|+++++.+|+++.++   |..+... +.++|+.++.+++..          
T Consensus       110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----------  178 (906)
T PRK14720        110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----------  178 (906)
T ss_pred             HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------
Confidence                   8999999999999999999999999999999998887   7777777 999999999998865          


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH--------HHH------------HHHHhhcCcHHHHHHHHHHHhcCC
Q 024618          146 LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWN--------KLG------------ATQANSVQSADAILAYQRALDLKP  205 (265)
Q Consensus       146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------~l~------------~~~~~~~~~~~A~~~~~~~~~~~~  205 (265)
                          +...+++..+.+++.+.+..+|.+.+.+.        .++            ..|...+++++++..++.+++.+|
T Consensus       179 ----~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~  254 (906)
T PRK14720        179 ----FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN  254 (906)
T ss_pred             ----HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence                66677888899999999888888754422        223            667788999999999999999999


Q ss_pred             cchhhHHHHHHHHH
Q 024618          206 NYVRAWANMGISYA  219 (265)
Q Consensus       206 ~~~~~~~~l~~~~~  219 (265)
                      .+..+...++.+|.
T Consensus       255 ~n~~a~~~l~~~y~  268 (906)
T PRK14720        255 KNNKAREELIRFYK  268 (906)
T ss_pred             cchhhHHHHHHHHH
Confidence            99999999999997

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.71  E-value=5.2e-15  Score=122.03  Aligned_cols=143  Identities=8%  Similarity=0.022  Sum_probs=98.9

Q ss_pred             hcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024618           69 EAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGV  148 (265)
Q Consensus        69 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  148 (265)
                      ...|.+++++..||.+....|.+++|...                               ++.+++..|++..++..++.
T Consensus        80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~-------------------------------l~~~~~~~Pd~~~a~~~~a~  128 (694)
T PRK15179         80 RRYPHTELFQVLVARALEAAHRSDEGLAV-------------------------------WRGIHQRFPDSSEAFILMLR  128 (694)
T ss_pred             HhccccHHHHHHHHHHHHHcCCcHHHHHH-------------------------------HHHHHhhCCCcHHHHHHHHH
Confidence            34566666666666666666665555544                               44445555666777777777


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHH
Q 024618          149 LYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESV  228 (265)
Q Consensus       149 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  228 (265)
                      ++.+.+++++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|.
T Consensus       129 ~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~  208 (694)
T PRK15179        129 GVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR  208 (694)
T ss_pred             HHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            77777777777777777777777777777777777777777777777777777767777777777777777777777777


Q ss_pred             HHHHHHHhcCCCCc
Q 024618          229 RYYVRALAMNPKAD  242 (265)
Q Consensus       229 ~~~~~a~~~~~~~~  242 (265)
                      ..|+++++...+-.
T Consensus       209 ~~~~~a~~~~~~~~  222 (694)
T PRK15179        209 DVLQAGLDAIGDGA  222 (694)
T ss_pred             HHHHHHHHhhCcch
Confidence            77777776654433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.71  E-value=3.9e-16  Score=128.54  Aligned_cols=142  Identities=11%  Similarity=0.082  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618          124 DVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL  203 (265)
Q Consensus       124 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  203 (265)
                      +++.-+.......|.++.++..+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~  149 (694)
T PRK15179         70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG  149 (694)
T ss_pred             hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence            33444445556678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          204 KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       204 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      +|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|
T Consensus       150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~  211 (694)
T PRK15179        150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL  211 (694)
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.70  E-value=9.5e-16  Score=121.64  Aligned_cols=212  Identities=17%  Similarity=0.184  Sum_probs=180.7

Q ss_pred             CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhh
Q 024618           39 ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPE  115 (265)
Q Consensus        39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~  115 (265)
                      ........++..+...|-...|+..+++.        ..|.....||...|+..+|.....+-++ .|.++..+   |.+
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV  466 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence            34456677999999999999999999876        5566678899999999999999999998 44444333   444


Q ss_pred             hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHH
Q 024618          116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL  195 (265)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  195 (265)
                      .....-+++|.++.+.      .+..+...+|......+++.++.+.++..++++|-....|+.+|.+..+.+++..|.+
T Consensus       467 ~~d~s~yEkawElsn~------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~  540 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNY------ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK  540 (777)
T ss_pred             ccChHHHHHHHHHhhh------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence            4444444555444433      2355778888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          196 AYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      .|..++..+|++..+|.+++..|.+.|+..+|...++++++.+-++...|.+...+....|.+++|++.|
T Consensus       541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~  610 (777)
T KOG1128|consen  541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAY  610 (777)
T ss_pred             HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988653

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.69  E-value=4.5e-16  Score=111.66  Aligned_cols=113  Identities=21%  Similarity=0.314  Sum_probs=104.9

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (265)
                      |.-++..++|.+|+..|.++++++|.++..+.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|..+|++++
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence            66778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcH
Q 024618          193 AILAYQRALDLKPNYVRAWANMGISYANQGMYE  225 (265)
Q Consensus       193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  225 (265)
                      |++.|+++++++|++...+.+|..+-.+.++..
T Consensus       168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999988888888887777655

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.69  E-value=5.9e-14  Score=111.94  Aligned_cols=250  Identities=18%  Similarity=0.124  Sum_probs=181.1

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhc-----CcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEN-----DDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT   86 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   86 (265)
                      .+|.++...|++++|...|..+++.+|++...+..+..+....     .+.+.-...|++.....|...... .+...+.
T Consensus        43 ~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~  121 (517)
T PF12569_consen   43 KRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFL  121 (517)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchh-HhhcccC
Confidence            5799999999999999999999999999999999988887333     356777888998888888654332 2222333


Q ss_pred             hhhhHHHHH-HHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhc---------------CCCC--HHHHHH
Q 024618           87 NELEQAAAL-KYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARM---------------SPED--ADVHIV  145 (265)
Q Consensus        87 ~~~~~~~A~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~--~~~~~~  145 (265)
                      .-..+.... .++...+...  .|...   -.++.......-...++......               .|..  ..+++.
T Consensus       122 ~g~~F~~~~~~yl~~~l~Kg--vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~  199 (517)
T PF12569_consen  122 EGDEFKERLDEYLRPQLRKG--VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYF  199 (517)
T ss_pred             CHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHH
Confidence            333444433 3444444332  22222   22222222222222222222211               1111  245688


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcH
Q 024618          146 LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYE  225 (265)
Q Consensus       146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  225 (265)
                      ++..|...|++++|+.++++++...|..++.+...|.++...|++.+|...++.+..+++.+-.+-...+..+.+.|+.+
T Consensus       200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e  279 (517)
T PF12569_consen  200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE  279 (517)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence            89999999999999999999999999999999999999999999999999999999999999888888999999999999


Q ss_pred             HHHHHHHHHHhcCCCCc-------hhH--HHHHHHHHHhCCccccccc
Q 024618          226 ESVRYYVRALAMNPKAD-------NAW--QYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       226 ~A~~~~~~a~~~~~~~~-------~~~--~~l~~~~~~~~~~~~A~~~  264 (265)
                      +|.+.+..-...+.+..       -.|  ...|.+|.+.|++..|+.-
T Consensus       280 ~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~  327 (517)
T PF12569_consen  280 EAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR  327 (517)
T ss_pred             HHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            99999987765542111       234  3478999999999888754

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.69  E-value=2e-16  Score=118.15  Aligned_cols=252  Identities=17%  Similarity=0.126  Sum_probs=182.5

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCChH----HHHHHHHHHhhcCcHHHHHHHHHHHHhc------CCChHHHHhhh
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENSE----GWRLLGIAHAENDDDQQAIAAMMRAHEA------EPTNLEVLLSL   81 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l   81 (265)
                      ..|..+++.|++...+.+|+.+++...++..    +|..+|++|+.+++|++|+++-..=+.+      .-..+.+.-++
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL  101 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL  101 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence            4588899999999999999999998877643    6778999999999999999875543322      12234566788


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhc--------------------hHHHHHHHHHH
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIA---------PPELSDSLY--------------------YADVARLFVEA  132 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~--------------------~~~a~~~~~~~  132 (265)
                      |..+..+|.+++|+.+..+-+.......+-.         +.+|...|+                    ++.|.++|..-
T Consensus       102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN  181 (639)
T KOG1130|consen  102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN  181 (639)
T ss_pred             cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence            8999999999999988887765433221111         334433332                    44555666655


Q ss_pred             HhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618          133 ARMSPED------ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQSADAILAYQRA  200 (265)
Q Consensus       133 ~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~  200 (265)
                      +++....      ..++-++|..|+-+|+|+.|+..-+.-+.+....      -.++.++|.++.-.|+++.|+++|+..
T Consensus       182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t  261 (639)
T KOG1130|consen  182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT  261 (639)
T ss_pred             HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence            5543221      2466778888888999999998887776653322      367888999999999999999999887


Q ss_pred             HhcC----Cc--chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC------CCchhHHHHHHHHHHhCCcccccc
Q 024618          201 LDLK----PN--YVRAWANMGISYANQGMYEESVRYYVRALAMNP------KADNAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       201 ~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      +.+.    ..  .+...+.+|..|.-..++++|+.++.+-+.+..      ....+++.||.++..+|..++|..
T Consensus       262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~  336 (639)
T KOG1130|consen  262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY  336 (639)
T ss_pred             HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence            6542    22  245677899999999999999999988776532      234677788999888888877753

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.68  E-value=4.9e-16  Score=115.81  Aligned_cols=161  Identities=17%  Similarity=0.073  Sum_probs=76.7

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 024618           77 VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS  153 (265)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  153 (265)
                      .....|.++...|++++|++.+.+.     .+....   ..++...++++.|.+.++.+.+.+.+..-+....+.+.+..
T Consensus       104 ~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~  178 (290)
T PF04733_consen  104 VQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLAT  178 (290)
T ss_dssp             HHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence            3344444455555555555444332     111111   44555555555555555555555444444333334444333


Q ss_pred             c--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCc-HHHHHH
Q 024618          154 R--QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMY-EESVRY  230 (265)
Q Consensus       154 ~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~  230 (265)
                      |  .+.+|...|++..+..+.++..+..++.++..+|++++|.+.+++++..+|+++.++.+++.+...+|+. +.+.++
T Consensus       179 g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~  258 (290)
T PF04733_consen  179 GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY  258 (290)
T ss_dssp             TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence            3  3555555555555544555555555555555555555555555555555555555555555555555554 334444


Q ss_pred             HHHHHhcCCCCc
Q 024618          231 YVRALAMNPKAD  242 (265)
Q Consensus       231 ~~~a~~~~~~~~  242 (265)
                      +.+....+|+++
T Consensus       259 l~qL~~~~p~h~  270 (290)
T PF04733_consen  259 LSQLKQSNPNHP  270 (290)
T ss_dssp             HHHCHHHTTTSH
T ss_pred             HHHHHHhCCCCh
Confidence            444444555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.67  E-value=8.5e-15  Score=98.04  Aligned_cols=116  Identities=13%  Similarity=0.062  Sum_probs=73.0

Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 024618           29 ALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKY  108 (265)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  108 (265)
                      .+++++..+|++..+...+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+..++++++     
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----   79 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-----   79 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence            455666666666666666666666666777776666666666666666666666666666665555544433333     


Q ss_pred             CCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024618          109 GTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYS  175 (265)
Q Consensus       109 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  175 (265)
                                                .+|.++..++.+|.++...|++++|+..++++++.+|++..
T Consensus        80 --------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        80 --------------------------LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             --------------------------cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence                                      34445666666666666666666666666666666665544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.67  E-value=1.2e-13  Score=102.84  Aligned_cols=224  Identities=16%  Similarity=0.039  Sum_probs=182.3

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPE-NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      ++.-+...-..|+++.|-.++.++-+..++ ...+....+.+....|+++.|..-..++++..|.++.+......+|...
T Consensus       121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~  200 (400)
T COG3071         121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRL  200 (400)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHh
Confidence            345567777889999999999988777443 3456777888889999999999999999999999999998888999999


Q ss_pred             hhHHHHHHHHHHHHhcC------------------------CC---------------------CCCCchhhhhhhhchH
Q 024618           89 LEQAAALKYLYGWLRHH------------------------PK---------------------YGTIAPPELSDSLYYA  123 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~------------------------~~---------------------~~~~~~~~~~~~~~~~  123 (265)
                      |++.+....+.+..+..                        ++                     ....++.-+..+|+.+
T Consensus       201 g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~  280 (400)
T COG3071         201 GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHD  280 (400)
T ss_pred             ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChH
Confidence            98888777766543311                        11                     1111166788899999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618          124 DVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL  203 (265)
Q Consensus       124 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  203 (265)
                      +|.+..+.+++..-+.. ....++  ...-++...-++..++.++..|++|..+..+|.++.+.+.+.+|..+|+.+++.
T Consensus       281 ~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~  357 (400)
T COG3071         281 EAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL  357 (400)
T ss_pred             HHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            99999999998765533 222222  346788999999999999999999999999999999999999999999999998


Q ss_pred             CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          204 KPNYVRAWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       204 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      .|+ ...+..+|.++.++|+..+|.+.++.++.+
T Consensus       358 ~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         358 RPS-ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             CCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            887 578889999999999999999999999854

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.66  E-value=6.2e-14  Score=102.19  Aligned_cols=81  Identities=25%  Similarity=0.143  Sum_probs=67.3

Q ss_pred             CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHH---HHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH---HHHhh
Q 024618            7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEG---WRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL---EVLLS   80 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~   80 (265)
                      ....+..|...+..|++++|+..|++++...|..+.+   .+.+|.++++.+++++|+..+++.++..|+++   .+++.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~  111 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM  111 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence            3446788999999999999999999999999987654   48899999999999999999999999988764   57777


Q ss_pred             hhhhhhh
Q 024618           81 LGVSHTN   87 (265)
Q Consensus        81 la~~~~~   87 (265)
                      +|.++..
T Consensus       112 ~g~~~~~  118 (243)
T PRK10866        112 RGLTNMA  118 (243)
T ss_pred             HHHhhhh
Confidence            7776543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.66  E-value=1.7e-15  Score=112.95  Aligned_cols=242  Identities=12%  Similarity=0.080  Sum_probs=179.4

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPE-NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      +-..+.++-.|+|..++...+ ....+|. .......+.+++..+|+++..+.-...   ..+....+...++..+...+
T Consensus         5 Lf~vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~   80 (290)
T PF04733_consen    5 LFTVRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPS   80 (290)
T ss_dssp             THHHHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTST
T ss_pred             HHHHHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCcc
Confidence            344677888999999998777 3333332 344667889999999998876655433   22334455566776666656


Q ss_pred             hHHHHHHHHHHHHhcCCCCCC-Cc----hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024618           90 EQAAALKYLYGWLRHHPKYGT-IA----PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQ  164 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  164 (265)
                      +.+.++..++..+........ ..    +.++...|++++|++.+.+.     .+.+.......+++..++++.|.+.++
T Consensus        81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~  155 (290)
T PF04733_consen   81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK  155 (290)
T ss_dssp             THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence            677777777665544322111 11    78888999999999988764     567888888999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhc--CcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618          165 TALKLKPQDYSLWNKLGATQANSV--QSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  242 (265)
                      .+.+.+.+..-+....+.+....|  ++.+|...|++..+..+.++..+..++.++..+|++++|.+.+.+++..+|.++
T Consensus       156 ~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~  235 (290)
T PF04733_consen  156 NMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP  235 (290)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence            998888776655555566666655  599999999998888788889999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhCCcccc
Q 024618          243 NAWQYLRISLRYAGRYPNR  261 (265)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~A  261 (265)
                      +++.+++.+...+|+..++
T Consensus       236 d~LaNliv~~~~~gk~~~~  254 (290)
T PF04733_consen  236 DTLANLIVCSLHLGKPTEA  254 (290)
T ss_dssp             HHHHHHHHHHHHTT-TCHH
T ss_pred             HHHHHHHHHHHHhCCChhH
Confidence            9999999999999988543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.66  E-value=2.4e-14  Score=102.06  Aligned_cols=175  Identities=18%  Similarity=0.208  Sum_probs=109.0

Q ss_pred             CCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH---H
Q 024618            3 PYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL---E   76 (265)
Q Consensus         3 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~   76 (265)
                      |-.....++..|...+..|+|.+|+..|++++...|..   +.+.+.+|.+++..|++++|+..+++.++..|+++   .
T Consensus         1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~   80 (203)
T PF13525_consen    1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY   80 (203)
T ss_dssp             ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence            34455667899999999999999999999999998875   46899999999999999999999999999998864   6


Q ss_pred             HHhhhhhhhhhhhh-----------HHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q 024618           77 VLLSLGVSHTNELE-----------QAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIV  145 (265)
Q Consensus        77 ~~~~la~~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  145 (265)
                      +++.+|.+++....           ..+|+..|+..+...|++...           .+|...+..+-.   .-..--+.
T Consensus        81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~-----------~~A~~~l~~l~~---~la~~e~~  146 (203)
T PF13525_consen   81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA-----------EEAKKRLAELRN---RLAEHELY  146 (203)
T ss_dssp             HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH-----------HHHHHHHHHHHH---HHHHHHHH
T ss_pred             HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH-----------HHHHHHHHHHHH---HHHHHHHH
Confidence            88888888765532           235555555555555554321           111111111100   00122334


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCcH
Q 024618          146 LGVLYNLSRQYDKAIESFQTALKLKPQDY---SLWNKLGATQANSVQSA  191 (265)
Q Consensus       146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~  191 (265)
                      +|..|.+.|.+..|+..++.+++..|+.+   .++..++.++...|..+
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence            45566666666666666666666666553   34555555555555555

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.64  E-value=1.1e-14  Score=112.44  Aligned_cols=113  Identities=12%  Similarity=0.192  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC
Q 024618          143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG  222 (265)
Q Consensus       143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  222 (265)
                      +...|...+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            34557777788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 024618          223 MYEESVRYYVRALAMNPKADNAWQYLRISLRYA  255 (265)
Q Consensus       223 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  255 (265)
                      ++++|+..|+++++++|+++.+...++.+..++
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            888888888888888888888877777776655

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=1.2e-13  Score=101.71  Aligned_cols=136  Identities=17%  Similarity=0.077  Sum_probs=69.8

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHh--------------cCC-----
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE--------------AEP-----   72 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------~~~-----   72 (265)
                      ..|.+++..|+|++|+..|.-+...+.-+.+.+..++.|++-+|.|.+|.....++-+              ++.     
T Consensus        62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~  141 (557)
T KOG3785|consen   62 WIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRIL  141 (557)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHH
Confidence            3455666666666666666655554444455566666666666666666554443311              000     


Q ss_pred             -------ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHH
Q 024618           73 -------TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADV  142 (265)
Q Consensus        73 -------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  142 (265)
                             +..+-...++.+.+..-.+.+|+..|.+++..+|+.....   +.++.+..-++-+.+.+.-.++..|+.+.+
T Consensus       142 ~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA  221 (557)
T KOG3785|consen  142 TFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIA  221 (557)
T ss_pred             HHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHH
Confidence                   0112223344444444555556666666655555543332   555555555555555555555555555444


Q ss_pred             HHHHH
Q 024618          143 HIVLG  147 (265)
Q Consensus       143 ~~~l~  147 (265)
                      ...++
T Consensus       222 ~NLka  226 (557)
T KOG3785|consen  222 KNLKA  226 (557)
T ss_pred             HHHHH
Confidence            33333

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=8.3e-14  Score=108.39  Aligned_cols=231  Identities=17%  Similarity=0.150  Sum_probs=170.2

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN   87 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   87 (265)
                      ++.+..-..+...|+|++|.+...+++...|++..+....-.+..+.+.|++|+...+.-......+ ...+..+.|.++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence            3556667778889999999999999999999999999999999999999999985544432222111 222788999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618           88 ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL  167 (265)
Q Consensus        88 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  167 (265)
                      .+..++|+..++.+-..++......++++..++++++|+..|+...+.+.++.+........-....  ..+ . ..+..
T Consensus        92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v  167 (652)
T KOG2376|consen   92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSV  167 (652)
T ss_pred             cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhc
Confidence            9999999999982222222122233999999999999999999999887776655443332221111  011 1 23334


Q ss_pred             hhCCC-CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC--------Cc--c-----hhhHHHHHHHHHhcCCcHHHHHHH
Q 024618          168 KLKPQ-DYSLWNKLGATQANSVQSADAILAYQRALDLK--------PN--Y-----VRAWANMGISYANQGMYEESVRYY  231 (265)
Q Consensus       168 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~--~-----~~~~~~l~~~~~~~g~~~~A~~~~  231 (265)
                      ...|. +.+.+++.+.++...|+|.+|++.+++++.+.        .+  .     ..+...++.++..+|+.++|...|
T Consensus       168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy  247 (652)
T KOG2376|consen  168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY  247 (652)
T ss_pred             cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            44444 56789999999999999999999999994431        11  1     235677999999999999999999


Q ss_pred             HHHHhcCCCCch
Q 024618          232 VRALAMNPKADN  243 (265)
Q Consensus       232 ~~a~~~~~~~~~  243 (265)
                      ...++.+|-+..
T Consensus       248 ~~~i~~~~~D~~  259 (652)
T KOG2376|consen  248 VDIIKRNPADEP  259 (652)
T ss_pred             HHHHHhcCCCch
Confidence            999999887653

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.62  E-value=9.8e-15  Score=96.31  Aligned_cols=96  Identities=15%  Similarity=0.031  Sum_probs=87.8

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      .+..|..++..|++++|.+.|+-+...+|.+...|+.||.++..+|++.+|+..|.+++.++|+++..++++|.|++..|
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence            46778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcC
Q 024618           90 EQAAALKYLYGWLRHH  105 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~  105 (265)
                      +.+.|.+.|+.++...
T Consensus       118 ~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        118 NVCYAIKALKAVVRIC  133 (157)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999998888765

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.60  E-value=9.3e-13  Score=96.07  Aligned_cols=166  Identities=12%  Similarity=0.041  Sum_probs=123.2

Q ss_pred             ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHH---HhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 024618           40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEV---LLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL  116 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  116 (265)
                      ++..++..|...+..|++++|++.|++++...|..+.+   .+.+|.+++..+++++|+..+++.++..|++        
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~--------  102 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH--------  102 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC--------
Confidence            56778899999999999999999999999999987654   4899999999999999999999999999985        


Q ss_pred             hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc------------------CHHHHHHHHHHHHhhCCCCHH---
Q 024618          117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR------------------QYDKAIESFQTALKLKPQDYS---  175 (265)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~A~~~~~~~~~~~~~~~~---  175 (265)
                                          |+.+.+++.+|.++...+                  ...+|+..|++.++..|++..   
T Consensus       103 --------------------~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~  162 (243)
T PRK10866        103 --------------------PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTD  162 (243)
T ss_pred             --------------------CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHH
Confidence                                444566666665543332                  124677788888888887632   


Q ss_pred             --------------HHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---hhhHHHHHHHHHhcCCcHHHHHHHHH
Q 024618          176 --------------LWNKLGATQANSVQSADAILAYQRALDLKPNY---VRAWANMGISYANQGMYEESVRYYVR  233 (265)
Q Consensus       176 --------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~  233 (265)
                                    --..+|..|.+.|.+..|+..++.+++..|+.   .+++..++.+|..+|..++|......
T Consensus       163 A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        163 ATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence                          12345566677777777777777777666654   35666677777777777777665543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.58  E-value=9.3e-13  Score=93.94  Aligned_cols=108  Identities=18%  Similarity=0.205  Sum_probs=82.5

Q ss_pred             ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 024618           40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL  116 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  116 (265)
                      ++..++..|...+..|++.+|+..|++++...|..   +.+.+.+|.+++..|+++.|+..+++.++..|+++       
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-------   76 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-------   76 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-------
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-------
Confidence            46788999999999999999999999999988865   67899999999999999999999999999998854       


Q ss_pred             hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHhhCCCCHH
Q 024618          117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS-----------RQYDKAIESFQTALKLKPQDYS  175 (265)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~  175 (265)
                                           ..+.+++.+|.++...           +...+|+..|+..+...|+++.
T Consensus        77 ---------------------~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y  125 (203)
T PF13525_consen   77 ---------------------KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY  125 (203)
T ss_dssp             ---------------------THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred             ---------------------chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH
Confidence                                 3345555555554433           3445788888888888888753

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=4.5e-12  Score=96.78  Aligned_cols=132  Identities=14%  Similarity=0.159  Sum_probs=88.4

Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------------------------------
Q 024618          133 ARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---------------------------------------  173 (265)
Q Consensus       133 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------------  173 (265)
                      ++.+|.+.++|+....+-...|+.+.-.+.|++++...|..                                       
T Consensus       315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~  394 (677)
T KOG1915|consen  315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD  394 (677)
T ss_pred             HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            44456566667766666666677777777777777655432                                       


Q ss_pred             ---------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618          174 ---------YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA  244 (265)
Q Consensus       174 ---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  244 (265)
                               +.+|...+.....+.+...|.+.+-.++...|.+ ..+.....+-.++++++.....|++-++..|.+..+
T Consensus       395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~  473 (677)
T KOG1915|consen  395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA  473 (677)
T ss_pred             hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence                     1223333333444455555555555555555543 334445555667888999999999999999999999


Q ss_pred             HHHHHHHHHHhCCcccccccC
Q 024618          245 WQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       245 ~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      |...|.+-..+|+.+.|..+|
T Consensus       474 W~kyaElE~~LgdtdRaRaif  494 (677)
T KOG1915|consen  474 WSKYAELETSLGDTDRARAIF  494 (677)
T ss_pred             HHHHHHHHHHhhhHHHHHHHH
Confidence            999999999999998887654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.57  E-value=2.9e-12  Score=98.10  Aligned_cols=150  Identities=19%  Similarity=0.172  Sum_probs=115.5

Q ss_pred             CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024618           72 PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGV  148 (265)
Q Consensus        72 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  148 (265)
                      |....+++..+..++..|++++|+..+...++..|+++..+   +.++...++..+|.+.+++++..+|+.+..+.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            55566666666666666666666666666666666655554   566666666677777777777788888888999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHH
Q 024618          149 LYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESV  228 (265)
Q Consensus       149 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  228 (265)
                      .++..|++.+|+..++..+..+|+++..|..++..|..+|+..+|...                 .+..+...|++++|+
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~  445 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI  445 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence            999999999999999999999999999999999999998887666543                 456667788888999


Q ss_pred             HHHHHHHhcC
Q 024618          229 RYYVRALAMN  238 (265)
Q Consensus       229 ~~~~~a~~~~  238 (265)
                      ..+..+.+..
T Consensus       446 ~~l~~A~~~~  455 (484)
T COG4783         446 IFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHhc
Confidence            8888888765

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.56  E-value=1.6e-13  Score=106.07  Aligned_cols=110  Identities=15%  Similarity=0.114  Sum_probs=100.7

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (265)
                      |......|++++|+..|.++++.+|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++...|++++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e   88 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT   88 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence            34456677888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHHhcC
Q 024618          193 AILAYQRALDLKPNYVRAWANMGISYANQG  222 (265)
Q Consensus       193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  222 (265)
                      |+..|++++.++|+++.+...++.+..++.
T Consensus        89 A~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         89 AKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988888866653

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.55  E-value=2.8e-12  Score=98.12  Aligned_cols=139  Identities=19%  Similarity=0.211  Sum_probs=121.5

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (265)
                      +......|++++|+..+...+...|+|+..+...+.++...|+.++|.+.+++++..+|+.+..+.++|..+.+.|++.+
T Consensus       313 A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         313 ALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence            44455678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 024618          193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS  251 (265)
Q Consensus       193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  251 (265)
                      |+..++..+..+|+++..|..++..|..+|+..+|.....+..........+...+..+
T Consensus       393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A  451 (484)
T COG4783         393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA  451 (484)
T ss_pred             HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998888887766655554444333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.54  E-value=4e-13  Score=87.86  Aligned_cols=107  Identities=21%  Similarity=0.207  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---hhhHHH
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNY---VRAWAN  213 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~  213 (265)
                      +.+++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|++++|+..|++++...|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4578899999999999999999999999998876   5789999999999999999999999999988875   578999


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618          214 MGISYANQGMYEESVRYYVRALAMNPKADNAWQ  246 (265)
Q Consensus       214 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  246 (265)
                      +|.++...|++++|+..++++++..|++..+..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            999999999999999999999999999866543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.54  E-value=1.8e-13  Score=102.65  Aligned_cols=250  Identities=16%  Similarity=0.108  Sum_probs=185.1

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHh------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC------hHHH
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLK------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT------NLEV   77 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~   77 (265)
                      +-++|..|+-.++|++|+++-..=+..      .-....+--++|+++-.+|.|++|+.+..+-+.+...      ...+
T Consensus        58 YsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RA  137 (639)
T KOG1130|consen   58 YSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRA  137 (639)
T ss_pred             HHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHH
Confidence            346789999999999999875432221      1223445667999999999999999999888765332      3568


Q ss_pred             Hhhhhhhhhhhhh--------------------HHHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhchHHHHHH
Q 024618           78 LLSLGVSHTNELE--------------------QAAALKYLYGWLRHHPKYGTIA---------PPELSDSLYYADVARL  128 (265)
Q Consensus        78 ~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~  128 (265)
                      ++++|.+|...|+                    ++.|.++|..-+++..+..+..         +..|.-.|+++.|+..
T Consensus       138 lYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~  217 (639)
T KOG1130|consen  138 LYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHF  217 (639)
T ss_pred             HhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHH
Confidence            9999999976653                    4456666666666544433222         7778889999999988


Q ss_pred             HHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC----C--CCHHHHHHHHHHHHhhcCcHHHHHH
Q 024618          129 FVEAARMSPE------DADVHIVLGVLYNLSRQYDKAIESFQTALKLK----P--QDYSLWNKLGATQANSVQSADAILA  196 (265)
Q Consensus       129 ~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~--~~~~~~~~l~~~~~~~~~~~~A~~~  196 (265)
                      -+.-+.+...      ...++.++|.++.-.|+++.|+++|++.+.+.    .  ..+...+.+|..|....++++|+.+
T Consensus       218 H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Y  297 (639)
T KOG1130|consen  218 HKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITY  297 (639)
T ss_pred             HHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            7776665332      23678899999999999999999999887542    2  2356788999999999999999999


Q ss_pred             HHHHHhcCC------cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC-----CC-CchhHHHHHHHHHHhCCcc
Q 024618          197 YQRALDLKP------NYVRAWANMGISYANQGMYEESVRYYVRALAMN-----PK-ADNAWQYLRISLRYAGRYP  259 (265)
Q Consensus       197 ~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----~~-~~~~~~~l~~~~~~~~~~~  259 (265)
                      +.+-+.+..      ....+++.+|..+...|..++|+.+.++.++..     |. ...+..++...-..+|..+
T Consensus       298 h~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d  372 (639)
T KOG1130|consen  298 HQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED  372 (639)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence            998776632      235688899999999999999999998887652     22 2345566666666666543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=4.8e-12  Score=91.31  Aligned_cols=242  Identities=17%  Similarity=0.104  Sum_probs=158.8

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHH
Q 024618           16 ELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL   95 (265)
Q Consensus        16 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~   95 (265)
                      .+++..+|.+||.++..-.+.+|.+...+..+|.||+...++..|..+|++.-...|.........+..+++.+.+..|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            44888999999999999999999999999999999999999999999999999999998888888888888888888887


Q ss_pred             HHHHHHHh----------------cCCCC----------------CCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCH
Q 024618           96 KYLYGWLR----------------HHPKY----------------GTIA---PPELSDSLYYADVARLFVEAARMSPEDA  140 (265)
Q Consensus        96 ~~~~~~~~----------------~~~~~----------------~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~  140 (265)
                      ........                ...++                ....   +.+..+.|+++.|++-|+.+++...-++
T Consensus        99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp  178 (459)
T KOG4340|consen   99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP  178 (459)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence            76543322                11111                0000   5555666666666666666666666666


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCC-------------------------HHHHHHHHHHHHhhcCcH
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKL----KPQD-------------------------YSLWNKLGATQANSVQSA  191 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------------------------~~~~~~l~~~~~~~~~~~  191 (265)
                      .+-++++.++++.|+++.|+++..++++.    .|.-                         .+++...+.++++.++++
T Consensus       179 llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~e  258 (459)
T KOG4340|consen  179 LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYE  258 (459)
T ss_pred             hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHH
Confidence            66666666666666666666666555543    2210                         133444455566666666


Q ss_pred             HHHHHHHHHHhcCCc-----chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccc
Q 024618          192 DAILAYQRALDLKPN-----YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNR  261 (265)
Q Consensus       192 ~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  261 (265)
                      .|.+.+..   +.|.     +|..+.+++..- ..+++.+...-+.-.+.++|--++...++-.+|++..-++-|
T Consensus       259 AA~eaLtD---mPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lA  329 (459)
T KOG4340|consen  259 AAQEALTD---MPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLA  329 (459)
T ss_pred             HHHHHhhc---CCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHH
Confidence            65554432   2222     244455554332 234455555555556666665556666666666665555444

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=2.2e-13  Score=98.01  Aligned_cols=211  Identities=14%  Similarity=0.068  Sum_probs=170.6

Q ss_pred             HhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHH
Q 024618           51 HAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVAR  127 (265)
Q Consensus        51 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~  127 (265)
                      +.+..+|..|++++..-.+..|.+...+..+|.||+...++..|..+|++.-...|+.....   ++.+...+.+..|+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            36677899999999999999999999999999999999999999999999999999866544   888889999999998


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618          128 LFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY  207 (265)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  207 (265)
                      +.........-.......-+.+.+..+++..+....++.-.  .+......+.|.+.++.|++++|++-|+.+++...-+
T Consensus       100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq  177 (459)
T KOG4340|consen  100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ  177 (459)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence            88776543222234455556777788888888777665421  2567888999999999999999999999999999888


Q ss_pred             hhhHHHHHHHHHhcCCcHHHHHHHHHHHhc----CCCC-------------------------chhHHHHHHHHHHhCCc
Q 024618          208 VRAWANMGISYANQGMYEESVRYYVRALAM----NPKA-------------------------DNAWQYLRISLRYAGRY  258 (265)
Q Consensus       208 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----~~~~-------------------------~~~~~~l~~~~~~~~~~  258 (265)
                      +-.-++++.++++.|++..|+++....++.    .|+.                         .+++...+.++++.|++
T Consensus       178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~  257 (459)
T KOG4340|consen  178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY  257 (459)
T ss_pred             chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH
Confidence            889999999999999999999988877654    3321                         13344456677788888


Q ss_pred             ccccc
Q 024618          259 PNRGD  263 (265)
Q Consensus       259 ~~A~~  263 (265)
                      +.|.+
T Consensus       258 eAA~e  262 (459)
T KOG4340|consen  258 EAAQE  262 (459)
T ss_pred             HHHHH
Confidence            77765

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=3e-12  Score=92.86  Aligned_cols=121  Identities=21%  Similarity=0.270  Sum_probs=112.3

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc---CcHHHHHHHH
Q 024618          122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSV---QSADAILAYQ  198 (265)
Q Consensus       122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~  198 (265)
                      .+.-+.-++.-+..+|++.+-|..+|.+|...|+++.|...|.+++++.|++++.+..+|.++..+.   ...++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            5667778888899999999999999999999999999999999999999999999999999887654   3568999999


Q ss_pred             HHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618          199 RALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       199 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  242 (265)
                      +++..+|.+..+.+.+|..++..|+|.+|+..++..++..|.+.
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999999999999999988654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=3.7e-12  Score=99.42  Aligned_cols=216  Identities=12%  Similarity=0.066  Sum_probs=161.0

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhh
Q 024618           43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSL  120 (265)
Q Consensus        43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~  120 (265)
                      ..+.--..+...|+|++|.....+++...|++..+....-.+....++|++|+...++-..........+  +.+..+.+
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN   93 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc
Confidence            3444445577889999999999999999999999999999999999999999955544433222222212  88999999


Q ss_pred             chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618          121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA  200 (265)
Q Consensus       121 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  200 (265)
                      ..++|+..++   ..++.+..+....|.+++++|+|++|+..|+..++.+.++.+........-....  -.+ . ..+.
T Consensus        94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~  166 (652)
T KOG2376|consen   94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQS  166 (652)
T ss_pred             cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHh
Confidence            9999999998   4566777788899999999999999999999998877766555443332221111  111 1 3333


Q ss_pred             HhcCCc-chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC-----CC--C--------chhHHHHHHHHHHhCCccccccc
Q 024618          201 LDLKPN-YVRAWANMGISYANQGMYEESVRYYVRALAMN-----PK--A--------DNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       201 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----~~--~--------~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      +...|. ..+.+++.+.++...|+|.+|++.+++++.+.     .+  +        ..+...++.++..+|+.++|..+
T Consensus       167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i  246 (652)
T KOG2376|consen  167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI  246 (652)
T ss_pred             ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            444444 46788999999999999999999999994431     11  1        13567799999999999999765


Q ss_pred             C
Q 024618          265 F  265 (265)
Q Consensus       265 ~  265 (265)
                      |
T Consensus       247 y  247 (652)
T KOG2376|consen  247 Y  247 (652)
T ss_pred             H
Confidence            4

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.50  E-value=1.2e-13  Score=80.82  Aligned_cols=67  Identities=30%  Similarity=0.618  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC-CcHHHHHHHHHHHhcCC
Q 024618          173 DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG-MYEESVRYYVRALAMNP  239 (265)
Q Consensus       173 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~  239 (265)
                      ++..|..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            45667777777777777777777777777777777777777777777777 57777777777777766

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.50  E-value=2.1e-12  Score=89.63  Aligned_cols=134  Identities=20%  Similarity=0.311  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHH
Q 024618          122 YADVARLFVEAARMSPED--ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILA  196 (265)
Q Consensus       122 ~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~  196 (265)
                      +..+...+.+.++..+.+  ...+..+|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+..
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            444455555554444444  5678999999999999999999999999887663   45899999999999999999999


Q ss_pred             HHHHHhcCCcchhhHHHHHHHHH-------hcCCcH-------HHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCc
Q 024618          197 YQRALDLKPNYVRAWANMGISYA-------NQGMYE-------ESVRYYVRALAMNPKADNAWQYLRISLRYAGRY  258 (265)
Q Consensus       197 ~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~-------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  258 (265)
                      +++++...|.....+..+|.++.       ..|+++       +|+.++++++..+|.+.   ...+..+...|++
T Consensus        95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~~~~  167 (168)
T CHL00033         95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY---IEAQNWLKITGRF  167 (168)
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHhcCC
Confidence            99999999999998888888888       777776       55566666777777643   3344445555554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=2.3e-12  Score=93.38  Aligned_cols=124  Identities=25%  Similarity=0.325  Sum_probs=90.2

Q ss_pred             ChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 024618           22 LLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGW  101 (265)
Q Consensus        22 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  101 (265)
                      ..+.-+.-++.-+..+|++.+.|..||.+|+..|+++.|...|.+++++.|++++.+..+|.+++...+           
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-----------  205 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-----------  205 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-----------
Confidence            355666667777777788888888888888888888888888888888888888877777777664432           


Q ss_pred             HhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024618          102 LRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD  173 (265)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  173 (265)
                                       .....++...++++++.+|.+..+.+.+|..++..|++.+|+..++..++..|.+
T Consensus       206 -----------------~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         206 -----------------QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             -----------------CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence                             1123456667777777777777777777777777777777777777777776654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.49  E-value=1.5e-12  Score=90.68  Aligned_cols=118  Identities=24%  Similarity=0.419  Sum_probs=99.4

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHH
Q 024618          137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWAN  213 (265)
Q Consensus       137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  213 (265)
                      +.....++.+|..+...|++++|+.+|+++++..|+.   +.++..+|.++...|++++|+..+++++...|.++..+..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            3456778999999999999999999999999887654   4689999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCC--------------cHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618          214 MGISYANQGM--------------YEESVRYYVRALAMNPKADNAWQYLRISLRYAGR  257 (265)
Q Consensus       214 l~~~~~~~g~--------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  257 (265)
                      +|.++...|+              +++|++++++++..+|++   +...+..+...|+
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            9999999887              678888999999988886   3344444444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.49  E-value=1e-12  Score=82.28  Aligned_cols=99  Identities=32%  Similarity=0.608  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ  221 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  221 (265)
                      +++.+|.++...|++++|+..++++++..|.++.++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999989999999999999


Q ss_pred             CCcHHHHHHHHHHHhcCCC
Q 024618          222 GMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       222 g~~~~A~~~~~~a~~~~~~  240 (265)
                      |++++|...+.++++..|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988773

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.49  E-value=1.6e-11  Score=107.31  Aligned_cols=253  Identities=13%  Similarity=0.002  Sum_probs=179.0

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHHHhh
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENS-----EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEVLLS   80 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~   80 (265)
                      ..|..+...|++++|...+++++...|...     .+...+|.++...|++++|...+.+++......      ..++..
T Consensus       457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~  536 (903)
T PRK04841        457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ  536 (903)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            356777889999999999999988554432     245678889999999999999999998763321      346677


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHhcCCCCC----C-------CchhhhhhhhchHHHHHHHHHHHhcCCC-----CHHHHH
Q 024618           81 LGVSHTNELEQAAALKYLYGWLRHHPKYG----T-------IAPPELSDSLYYADVARLFVEAARMSPE-----DADVHI  144 (265)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~  144 (265)
                      +|.++...|++++|...+++++.......    .       ..+.++...|++++|...+.+++.....     ....+.
T Consensus       537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  616 (903)
T PRK04841        537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA  616 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence            89999999999999999999887533221    1       0156778889999999999998775321     245566


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHH----HHHHHHHhhcCcHHHHHHHHHHHhcCCcchh----hHHH
Q 024618          145 VLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWN----KLGATQANSVQSADAILAYQRALDLKPNYVR----AWAN  213 (265)
Q Consensus       145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~  213 (265)
                      .++.++...|++++|...+.++....+..   .....    .....+...|+.+.|...+.......+....    .+..
T Consensus       617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~  696 (903)
T PRK04841        617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN  696 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence            78889999999999999999987653321   11111    1123344567777777777665543222211    2456


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHhcCCC------CchhHHHHHHHHHHhCCccccccc
Q 024618          214 MGISYANQGMYEESVRYYVRALAMNPK------ADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       214 l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      ++.++...|++++|...+++++.....      ...++..+|.++...|+.++|.+.
T Consensus       697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~  753 (903)
T PRK04841        697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRV  753 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            788888888888888888888765221      234566788888888888777653

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.49  E-value=7.5e-12  Score=84.50  Aligned_cols=134  Identities=20%  Similarity=0.122  Sum_probs=104.7

Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPED---ADVHIVLGVLYNLSRQYDKAIESFQT  165 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~  165 (265)
                      .+.++|-..|..++..            ...++...+...++......|+.   ..+.+.+|.++...|++++|...|+.
T Consensus         6 ~~~~~a~~~y~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~   73 (145)
T PF09976_consen    6 QQAEQASALYEQALQA------------LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEK   73 (145)
T ss_pred             HHHHHHHHHHHHHHHH------------HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3445555666655543            23455677777788888888877   46778889999999999999999999


Q ss_pred             HHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618          166 ALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL  235 (265)
Q Consensus       166 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  235 (265)
                      ++...|+.   +.+...++.++...|++++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus        74 ~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   74 ALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99887654   45788899999999999999999976 33344456778889999999999999999999874

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=1.1e-11  Score=91.51  Aligned_cols=252  Identities=12%  Similarity=-0.003  Sum_probs=171.8

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN   87 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   87 (265)
                      ++.+.+|.+.+..-.|++||.+|++++..+|+....-..++.||+++.-++-+.+++.--++..|+++.+....+...++
T Consensus       152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fR  231 (557)
T KOG3785|consen  152 EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFR  231 (557)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhh
Confidence            45677888999999999999999999999998888888899999999999999999999999999998877777665554


Q ss_pred             hhhHHHHHH-----------------------------------HHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHH
Q 024618           88 ELEQAAALK-----------------------------------YLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEA  132 (265)
Q Consensus        88 ~~~~~~A~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  132 (265)
                      .-+-..|..                                   .+-..++.-|+-..-+...+..+++..+|..+.+. 
T Consensus       232 l~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd-  310 (557)
T KOG3785|consen  232 LINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD-  310 (557)
T ss_pred             hhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh-
Confidence            322222222                                   11122222222222225556777888888777654 


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh---hCC------CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618          133 ARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK---LKP------QDYSLWNKLGATQANSVQSADAILAYQRALDL  203 (265)
Q Consensus       133 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  203 (265)
                        .+|..|.-+...|.+....|+-....+.++.+-+   +-.      +.......++.+++-..++++.+.+++..-..
T Consensus       311 --l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY  388 (557)
T KOG3785|consen  311 --LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY  388 (557)
T ss_pred             --cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              5777777777788887777766555544443322   211      12233455666666677777777777766555


Q ss_pred             CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHhCCccccc
Q 024618          204 KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP-KADNAWQYLRISLRYAGRYPNRG  262 (265)
Q Consensus       204 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~  262 (265)
                      ..++....+++++++...|++.+|.+.|-+.-..+- +.......|+.||.+.+..+-|-
T Consensus       389 F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW  448 (557)
T KOG3785|consen  389 FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW  448 (557)
T ss_pred             hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence            566666777788888888888888888776654432 22334456788888777766553

>PRK15331 chaperone protein SicA; Provisional

Probab=99.48  E-value=2.7e-12  Score=85.21  Aligned_cols=114  Identities=12%  Similarity=-0.032  Sum_probs=102.7

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh
Q 024618          131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRA  210 (265)
Q Consensus       131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  210 (265)
                      .+..+.++..+..+..|.-++..|++++|...|+-....+|.+++.|..+|.++..+++|++|+..|..+..+++++|..
T Consensus        28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p  107 (165)
T PRK15331         28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP  107 (165)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence            34445556667888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhH
Q 024618          211 WANMGISYANQGMYEESVRYYVRALAMNPKADNAW  245 (265)
Q Consensus       211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  245 (265)
                      .+..|.|+..+|+.+.|+.+|..++. .|.+....
T Consensus       108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~  141 (165)
T PRK15331        108 VFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLR  141 (165)
T ss_pred             cchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence            99999999999999999999999998 46655443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=7.4e-11  Score=90.32  Aligned_cols=251  Identities=14%  Similarity=0.059  Sum_probs=190.6

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      .|+.-|+--..++++..|.+++++++..+..+...|...+.+-++......|..++++++.+-|.-...|+....+-..+
T Consensus        75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L  154 (677)
T KOG1915|consen   75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML  154 (677)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            46667777788899999999999999999999999999999999999999999999999999999999999988888899


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA  166 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  166 (265)
                      |+...|.+.|++.+...|+.....  ...-...+.++.|...|++.+-.+|+ ...|...+..-.+.|+..-|...|+++
T Consensus       155 gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerA  233 (677)
T KOG1915|consen  155 GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERA  233 (677)
T ss_pred             cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            999999999999999999865444  55556677888899999999888886 777888888888899999999999998


Q ss_pred             HhhCCCCH---HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc--hhhHHHHHHHHHhcCCc---HHHH-----HHHHH
Q 024618          167 LKLKPQDY---SLWNKLGATQANSVQSADAILAYQRALDLKPNY--VRAWANMGISYANQGMY---EESV-----RYYVR  233 (265)
Q Consensus       167 ~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~---~~A~-----~~~~~  233 (265)
                      ++.-.++.   ..+...+..-..++.++.|.-.|+-++..-|.+  ...+......-.+-|+.   ++++     -.|++
T Consensus       234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~  313 (677)
T KOG1915|consen  234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK  313 (677)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence            88655542   334445555556677777777777777766665  23333333333334442   2222     13455


Q ss_pred             HHhcCCCCchhHHHHHHHHHHhCCccc
Q 024618          234 ALAMNPKADNAWQYLRISLRYAGRYPN  260 (265)
Q Consensus       234 a~~~~~~~~~~~~~l~~~~~~~~~~~~  260 (265)
                      .++.+|-+-++|+..-.+....|+.+.
T Consensus       314 ~v~~np~nYDsWfdylrL~e~~g~~~~  340 (677)
T KOG1915|consen  314 EVSKNPYNYDSWFDYLRLEESVGDKDR  340 (677)
T ss_pred             HHHhCCCCchHHHHHHHHHHhcCCHHH
Confidence            566666666666666666655555443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.47  E-value=1.4e-12  Score=85.32  Aligned_cols=102  Identities=20%  Similarity=0.214  Sum_probs=91.8

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSL   81 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l   81 (265)
                      ..++..|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|++++|+..+++++...|++   +.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            356889999999999999999999999998876   5688999999999999999999999999998875   6789999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKYG  109 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~  109 (265)
                      |.++...|++++|+..+++++...|++.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence            9999999999999999999998888754

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.47  E-value=5.6e-13  Score=77.94  Aligned_cols=67  Identities=27%  Similarity=0.365  Sum_probs=53.1

Q ss_pred             ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh-hHHHHHHHHHHHHhcCC
Q 024618           40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL-EQAAALKYLYGWLRHHP  106 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~  106 (265)
                      ++..|..+|.+++..|++++|+.+|+++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            46677778888888888888888888888888888888888888888887 67888888877777766

...

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=6e-11  Score=84.20  Aligned_cols=229  Identities=14%  Similarity=0.033  Sum_probs=137.5

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHH--------------HHHHHHHHhcC---
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA--------------IAAMMRAHEAE---   71 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A--------------~~~~~~~~~~~---   71 (265)
                      .-+--.+-++-.|+|..++..-.+.-.. +........+.+.|..+|++...              +..+...++..   
T Consensus        10 d~LF~iRn~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   10 DELFNIRNYFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchh
Confidence            4455577888899999999887776433 36677777788888888876533              22222222211   


Q ss_pred             ----------------CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhc
Q 024618           72 ----------------PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARM  135 (265)
Q Consensus        72 ----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  135 (265)
                                      ..+......-|.++...|++++|++.......+.  .......++.+..+.+-|...++++.++
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~i  166 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE--AAALNVQILLKMHRFDLAEKELKKMQQI  166 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                            1111233344556666677777766655421110  0011155666666777777777776665


Q ss_pred             CCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH
Q 024618          136 SPEDADVHIVLGVLYNL----SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW  211 (265)
Q Consensus       136 ~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  211 (265)
                      +.+  .++..+|..+..    .+++.+|.-+|++.-+..|..+.....++.++..+|++++|...++.++..++++++++
T Consensus       167 ded--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL  244 (299)
T KOG3081|consen  167 DED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL  244 (299)
T ss_pred             chH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence            433  334444444332    23566777777777766666677777777777777777777777777777777777777


Q ss_pred             HHHHHHHHhcCCcHHHHH-HHHHHHhcCCCCc
Q 024618          212 ANMGISYANQGMYEESVR-YYVRALAMNPKAD  242 (265)
Q Consensus       212 ~~l~~~~~~~g~~~~A~~-~~~~a~~~~~~~~  242 (265)
                      .++..+-...|...++.+ ...+.....|+++
T Consensus       245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            777777777776655544 3344444555544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.46  E-value=2.5e-11  Score=83.59  Aligned_cols=192  Identities=16%  Similarity=0.074  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhh
Q 024618           42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSD  118 (265)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~  118 (265)
                      ..++..|..|-..|-+.-|.--|.+++.+.|+.++++..+|..+...|+++.|.+.|+..++++|......   |..+.-
T Consensus        66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY  145 (297)
T COG4785          66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  145 (297)
T ss_pred             HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence            34555666666666666666666666666666666666666666666666666666666666666655444   555555


Q ss_pred             hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHH
Q 024618          119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQ  198 (265)
Q Consensus       119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  198 (265)
                      -|++.-|.+-+.+..+.+|++|.--..+-. -...-++.+|...+.+-.+...+....|...+.   ..|+..+ ...++
T Consensus       146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~---yLgkiS~-e~l~~  220 (297)
T COG4785         146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF---YLGKISE-ETLME  220 (297)
T ss_pred             cCchHhhHHHHHHHHhcCCCChHHHHHHHH-HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH---HHhhccH-HHHHH
Confidence            666666666666666666666532111111 112234555554443333222222222222221   1222211 11222


Q ss_pred             HHHhcCCcc-------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC
Q 024618          199 RALDLKPNY-------VRAWANMGISYANQGMYEESVRYYVRALAMN  238 (265)
Q Consensus       199 ~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  238 (265)
                      ++.....++       .++++.+|..+...|+..+|...|+-++..+
T Consensus       221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            222222221       3566777777777777777777777776643

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.44  E-value=2.3e-12  Score=80.69  Aligned_cols=98  Identities=21%  Similarity=0.247  Sum_probs=91.8

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      ++.+|..+...|++++|+..++++++..|.++.++..+|.++...+++++|+..+++++...|.++.++..+|.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCC
Q 024618           90 EQAAALKYLYGWLRHHPK  107 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~  107 (265)
                      +++.|...+.+++...|+
T Consensus        83 ~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          83 KYEEALEAYEKALELDPN  100 (100)
T ss_pred             hHHHHHHHHHHHHccCCC
Confidence            999999999998887763

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.44  E-value=4.8e-13  Score=81.40  Aligned_cols=82  Identities=18%  Similarity=0.128  Sum_probs=73.1

Q ss_pred             HcCChHHHHHHHHHHHHhCCC--ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHH
Q 024618           19 RKGLLSEAVLALEAEVLKNPE--NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALK   96 (265)
Q Consensus        19 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~   96 (265)
                      ..|++++|+..++++++..|.  +...++.+|.+++..|++++|+..+++ .+.+|.++...+.+|.++..+|++++|+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  466788899999999999999999999 88889899999999999999999999999


Q ss_pred             HHHHH
Q 024618           97 YLYGW  101 (265)
Q Consensus        97 ~~~~~  101 (265)
                      .++++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            98764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.43  E-value=6.6e-13  Score=76.59  Aligned_cols=65  Identities=31%  Similarity=0.493  Sum_probs=49.6

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL   75 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~   75 (265)
                      +.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            35677778888888888888888888888888888888888888888888888888888777764

>PRK11906 transcriptional regulator; Provisional

Probab=99.43  E-value=1.1e-11  Score=95.29  Aligned_cols=121  Identities=12%  Similarity=0.081  Sum_probs=93.0

Q ss_pred             hHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC
Q 024618          122 YADVARLFVEAA---RMSPEDADVHIVLGVLYNLS---------RQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ  189 (265)
Q Consensus       122 ~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  189 (265)
                      .+.|+.+|.+++   .++|+...++..++.++...         .+..+|....+++++++|.++.++..+|.+....++
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~  353 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ  353 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence            456677777777   77777777777777776543         234567777778888888888888888888887788


Q ss_pred             cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618          190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  242 (265)
                      ++.|...|++++.++|+.+.+|+..|.+....|+.++|++.++++++++|...
T Consensus       354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            88888888888888888888888888888888888888888888888887654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.43  E-value=9.6e-12  Score=86.59  Aligned_cols=113  Identities=19%  Similarity=0.197  Sum_probs=72.9

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT   86 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   86 (265)
                      ++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+.+++...|.++..+..+|.++.
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  117 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH  117 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4566777777777777777777777665543   3466777777777777777777777777777777777777777777


Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCC
Q 024618           87 NELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPED  139 (265)
Q Consensus        87 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  139 (265)
                      ..|+...+...++.++.                 .+.+|++.+++++..+|++
T Consensus       118 ~~g~~~~a~~~~~~A~~-----------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        118 KRGEKAEEAGDQDEAEA-----------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HcCChHhHhhCHHHHHH-----------------HHHHHHHHHHHHHhhCchh
Confidence            66665555544443332                 1455555555655555554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.43  E-value=3.4e-11  Score=96.95  Aligned_cols=150  Identities=15%  Similarity=0.093  Sum_probs=109.4

Q ss_pred             hCCCChHHH--HHHHHHHhhcCc---HHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 024618           36 KNPENSEGW--RLLGIAHAENDD---DQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGT  110 (265)
Q Consensus        36 ~~~~~~~~~--~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  110 (265)
                      ..|.++.+|  +..|..+...++   ..+|+.+|+++++++|+++.++..++.++.....+..                 
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~-----------------  394 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP-----------------  394 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC-----------------
Confidence            346666655  446666665544   7899999999999999999999988887754322210                 


Q ss_pred             CchhhhhhhhchHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 024618          111 IAPPELSDSLYYADVARLFVEAARM--SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSV  188 (265)
Q Consensus       111 ~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  188 (265)
                            ....+...+.....+++..  +|.++.++..+|......|++++|...+++++.++| +..++..+|.++...|
T Consensus       395 ------~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G  467 (517)
T PRK10153        395 ------LDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKG  467 (517)
T ss_pred             ------ccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC
Confidence                  0011234444555555553  666677888888888888888888888888888888 4778888888888888


Q ss_pred             CcHHHHHHHHHHHhcCCcchh
Q 024618          189 QSADAILAYQRALDLKPNYVR  209 (265)
Q Consensus       189 ~~~~A~~~~~~~~~~~~~~~~  209 (265)
                      ++++|+..|++++.++|.++.
T Consensus       468 ~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        468 DNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CHHHHHHHHHHHHhcCCCCch
Confidence            888888888888888888764

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.43  E-value=5.8e-13  Score=81.03  Aligned_cols=81  Identities=22%  Similarity=0.338  Sum_probs=54.4

Q ss_pred             ccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHH
Q 024618          153 SRQYDKAIESFQTALKLKPQ--DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRY  230 (265)
Q Consensus       153 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  230 (265)
                      .|++++|+..++++++..|.  +...++.+|.++...|++++|+..+++ ...+|.++...+.+|.++.++|++++|++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46677777777777777664  345566667777777777777777777 666666666666667777777777777777


Q ss_pred             HHHH
Q 024618          231 YVRA  234 (265)
Q Consensus       231 ~~~a  234 (265)
                      ++++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            7653

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.43  E-value=2.9e-11  Score=90.91  Aligned_cols=171  Identities=15%  Similarity=0.097  Sum_probs=116.8

Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHhcCCC------hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhh
Q 024618           46 LLGIAHAENDDDQQAIAAMMRAHEAEPT------NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDS  119 (265)
Q Consensus        46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (265)
                      ..|.+|...|++++|.++|.++....-.      -...+...+.++... ++++|+.++++++.+           +...
T Consensus        40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~-----------y~~~  107 (282)
T PF14938_consen   40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEI-----------YREA  107 (282)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHH-----------HHHC
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHH-----------HHhc
Confidence            3477888888888888888888654211      123444555555443 777777777666543           3334


Q ss_pred             hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHhhcCcHH
Q 024618          120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLS-RQYDKAIESFQTALKLKPQ--D----YSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~  192 (265)
                      |++..|              ...+..+|.+|... |++++|+++|++++.....  .    ...+..+|.++...|+|++
T Consensus       108 G~~~~a--------------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~  173 (282)
T PF14938_consen  108 GRFSQA--------------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE  173 (282)
T ss_dssp             T-HHHH--------------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             CcHHHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence            444443              34566778888888 9999999999999886322  2    3567788999999999999


Q ss_pred             HHHHHHHHHhcCCcc-------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618          193 AILAYQRALDLKPNY-------VRAWANMGISYANQGMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       193 A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  242 (265)
                      |+..|+++....-++       ...++..+.|+...|++..|...+++....+|...
T Consensus       174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence            999999988653221       13456778899999999999999999999988654

>PRK11906 transcriptional regulator; Provisional

Probab=99.42  E-value=6.5e-11  Score=91.19  Aligned_cols=178  Identities=13%  Similarity=0.120  Sum_probs=140.2

Q ss_pred             CCCCh---HHH----HHHHHHHhhcC---cHHHHHHHHHHHH---hcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618           37 NPENS---EGW----RLLGIAHAEND---DDQQAIAAMMRAH---EAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR  103 (265)
Q Consensus        37 ~~~~~---~~~----~~l~~~~~~~~---~~~~A~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  103 (265)
                      .|.+.   ++|    +..|...+..+   ....|..+|.+++   .++|+...++..++.|+...--.            
T Consensus       244 ~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~------------  311 (458)
T PRK11906        244 AKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALH------------  311 (458)
T ss_pred             CCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHh------------
Confidence            35555   444    56677665555   4567899999999   99999999999999988754110            


Q ss_pred             cCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024618          104 HHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  183 (265)
                               +..- ......+|.+..+++++++|.|+.++..+|.+....++++.|...|++++.++|+.+.+|+..|.+
T Consensus       312 ---------g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~  381 (458)
T PRK11906        312 ---------GKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV  381 (458)
T ss_pred             ---------cCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence                     0000 122347788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHH-HHhcCCcHHHHHHHHHHHh
Q 024618          184 QANSVQSADAILAYQRALDLKPNYVRAWANMGIS-YANQGMYEESVRYYVRALA  236 (265)
Q Consensus       184 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~  236 (265)
                      ....|+.++|.+.++++++++|.-..+-...-.+ .+-....++|+..|-+-.+
T Consensus       382 ~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (458)
T PRK11906        382 HFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE  435 (458)
T ss_pred             HHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence            9999999999999999999999875443333233 3345567888888866443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.41  E-value=2.1e-10  Score=100.38  Aligned_cols=254  Identities=15%  Similarity=0.026  Sum_probs=185.8

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCC-----C----hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-----HH
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPE-----N----SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-----LE   76 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~   76 (265)
                      ...+..+...|++++|...+..+....+.     .    ......++.++...|++++|...+++++...+..     ..
T Consensus       413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  492 (903)
T PRK04841        413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV  492 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence            45677888999999999999988664322     1    2344557888899999999999999999854432     23


Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhchHHHHHHHHHHHhcCCC--------C
Q 024618           77 VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---------PPELSDSLYYADVARLFVEAARMSPE--------D  139 (265)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~--------~  139 (265)
                      +...+|.++...|++++|...+++++..........         +.++...|++++|...+++++.....        .
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            567788889999999999999999987655432211         66788899999999999998875211        2


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch---hhH
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ-----DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV---RAW  211 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~  211 (265)
                      ...+..+|.++...|++++|...+.+++.....     ....+..+|.++...|++++|...+.++....+...   ...
T Consensus       573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~  652 (903)
T PRK04841        573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI  652 (903)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence            234567788999999999999999999875321     245566788899999999999999999876533211   111


Q ss_pred             H----HHHHHHHhcCCcHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHhCCccccccc
Q 024618          212 A----NMGISYANQGMYEESVRYYVRALAMNPKADN----AWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       212 ~----~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      .    .....+...|+.+.|..++.......+....    .+..++.++...|++++|...
T Consensus       653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~  713 (903)
T PRK04841        653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEII  713 (903)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            1    1224455688999999998776653322221    245788999999999888654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.41  E-value=1.4e-12  Score=75.26  Aligned_cols=64  Identities=31%  Similarity=0.542  Sum_probs=42.3

Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618          179 KLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       179 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  242 (265)
                      .+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4566666666777777777777766666666677777777777777777777777666666653

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.40  E-value=1.3e-09  Score=80.10  Aligned_cols=221  Identities=27%  Similarity=0.338  Sum_probs=192.2

Q ss_pred             cCChHHHHHHHHHHHHhCCC--ChHHHHHHHHHHhhcCcHHHHHHHHHHHHh--cCCChHHHHhhhhhhhhhhhhHHHHH
Q 024618           20 KGLLSEAVLALEAEVLKNPE--NSEGWRLLGIAHAENDDDQQAIAAMMRAHE--AEPTNLEVLLSLGVSHTNELEQAAAL   95 (265)
Q Consensus        20 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~   95 (265)
                      .+.+..+...+...+...+.  ........+..+...+++..+...+.....  ..+.....+...+......+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            46677788888888777775  367888889999999999999999999997  68888899999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCc---hh-hhhhhhchHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618           96 KYLYGWLRHHPKYGTIA---PP-ELSDSLYYADVARLFVEAARMSP---EDADVHIVLGVLYNLSRQYDKAIESFQTALK  168 (265)
Q Consensus        96 ~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  168 (265)
                      ..+..++...+......   .. ++...++++.|...+.+++...|   .........+..+...++++.++..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            99999999877763333   44 78899999999999999988776   3556667777778889999999999999999


Q ss_pred             hCCC-CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          169 LKPQ-DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       169 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      ..+. ....+..++..+...++++.|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            9999 68999999999999999999999999999999987777888888888778899999999999999887

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.40  E-value=2.2e-11  Score=98.04  Aligned_cols=123  Identities=14%  Similarity=0.152  Sum_probs=106.0

Q ss_pred             hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhhcC
Q 024618          120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR--------QYDKAIESFQTALKL--KPQDYSLWNKLGATQANSVQ  189 (265)
Q Consensus       120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~  189 (265)
                      +....|+.+|+++++.+|++..++-.++.++....        +...+.....+++..  +|.++.++..+|......|+
T Consensus       356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~  435 (517)
T PRK10153        356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK  435 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence            34778999999999999999999988888775532        344556666666553  77778899999999999999


Q ss_pred             cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch
Q 024618          190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN  243 (265)
Q Consensus       190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  243 (265)
                      +++|...+++++.++|+ ..+|..+|.++...|++++|++.|++++.++|.++.
T Consensus       436 ~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        436 TDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            99999999999999995 789999999999999999999999999999999774

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.40  E-value=2.3e-10  Score=81.47  Aligned_cols=176  Identities=19%  Similarity=0.147  Sum_probs=104.9

Q ss_pred             CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHH---HHhh
Q 024618            7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE---VLLS   80 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~   80 (265)
                      ...++..|...++.|++++|+..|+.+....|..   ..+...++.++++.+++++|+..+++.+.+.|.++.   +++.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            4457889999999999999999999998888765   458888999999999999999999999999888754   5566


Q ss_pred             hhhhhhh--------hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024618           81 LGVSHTN--------ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL  152 (265)
Q Consensus        81 la~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  152 (265)
                      .|.++..        ..-...|+..|+..+...|++....           .|..-+..+   ...-..--..+|..|.+
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~-----------dA~~~i~~~---~d~LA~~Em~IaryY~k  179 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP-----------DAKARIVKL---NDALAGHEMAIARYYLK  179 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh-----------hHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            6655432        1223344444555555555433211           000000000   00001112334555555


Q ss_pred             ccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHH
Q 024618          153 SRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILA  196 (265)
Q Consensus       153 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~  196 (265)
                      .|.+..|+..++++++..|+.   .+++..+..+|..+|-.++|...
T Consensus       180 r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         180 RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence            555555555555555554433   23444455555555555555443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.39  E-value=3.7e-11  Score=81.12  Aligned_cols=126  Identities=23%  Similarity=0.154  Sum_probs=103.3

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGV   83 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~   83 (265)
                      .+..+......++...+...+++++..+|+.   ..+.+.+|.+++..|++++|...|+.++...|+.   +.+...++.
T Consensus        14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            3555666667899999999999999999988   4577889999999999999999999999987665   457888999


Q ss_pred             hhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618           84 SHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF  163 (265)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  163 (265)
                      ++...|++++|+..++...                                ..+..+.++..+|.++...|++++|+..|
T Consensus        94 ~~~~~~~~d~Al~~L~~~~--------------------------------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y  141 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQIP--------------------------------DEAFKALAAELLGDIYLAQGDYDEARAAY  141 (145)
T ss_pred             HHHHcCCHHHHHHHHHhcc--------------------------------CcchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999998888775421                                12334667888999999999999999999


Q ss_pred             HHHH
Q 024618          164 QTAL  167 (265)
Q Consensus       164 ~~~~  167 (265)
                      ++++
T Consensus       142 ~~Al  145 (145)
T PF09976_consen  142 QKAL  145 (145)
T ss_pred             HHhC
Confidence            8874

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.39  E-value=3.2e-11  Score=83.71  Aligned_cols=86  Identities=17%  Similarity=0.210  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHHHhCCCC--hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHH
Q 024618           23 LSEAVLALEAEVLKNPEN--SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKY   97 (265)
Q Consensus        23 ~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~   97 (265)
                      +..+...+...++..+.+  ...++.+|.++...|++++|+..|++++.+.|+.   +.++..+|.++...|++++|+..
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            334444444433333332  3344555555555555555555555555554432   23555555555555555555555


Q ss_pred             HHHHHhcCCCC
Q 024618           98 LYGWLRHHPKY  108 (265)
Q Consensus        98 ~~~~~~~~~~~  108 (265)
                      +++++...|..
T Consensus        95 ~~~Al~~~~~~  105 (168)
T CHL00033         95 YFQALERNPFL  105 (168)
T ss_pred             HHHHHHhCcCc
Confidence            55555555543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.38  E-value=4.5e-11  Score=87.90  Aligned_cols=107  Identities=21%  Similarity=0.235  Sum_probs=95.2

Q ss_pred             CHHHHHHHHHHH-HHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---hhhH
Q 024618          139 DADVHIVLGVLY-NLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNY---VRAW  211 (265)
Q Consensus       139 ~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~  211 (265)
                      +....+..+..+ ...|++++|+..|++.++..|++   +.+++.+|.+|...|++++|+..|++++...|++   ++++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            346667777765 66799999999999999999998   5899999999999999999999999999888774   6889


Q ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhH
Q 024618          212 ANMGISYANQGMYEESVRYYVRALAMNPKADNAW  245 (265)
Q Consensus       212 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  245 (265)
                      +.+|.++..+|++++|+..|+++++..|+...+.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            9999999999999999999999999999976543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.38  E-value=4.2e-13  Score=98.40  Aligned_cols=230  Identities=12%  Similarity=0.020  Sum_probs=171.5

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE   90 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   90 (265)
                      -.+|..|+++|+|++||.+|.+.+..+|.++..+.+.+.+|++...+..|...+..++.++.....+|...+.+...+|.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHH---------HHHHHHHHccCHHHHHH
Q 024618           91 QAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHI---------VLGVLYNLSRQYDKAIE  161 (265)
Q Consensus        91 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------~l~~~~~~~~~~~~A~~  161 (265)
                      ..+|.+.++.++.+.|+..... ..+.......++    +-+.+..|....+..         .-|..+...|.++.++.
T Consensus       181 ~~EAKkD~E~vL~LEP~~~ELk-K~~a~i~Sl~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~  255 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNIELK-KSLARINSLRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVV  255 (536)
T ss_pred             HHHHHHhHHHHHhhCcccHHHH-HHHHHhcchHhh----hHHhhcCCCCCccccchhhhccccCcchhhhhhhcccccee
Confidence            9999999999999999854332 001111111111    111122222222222         22455666777777777


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC
Q 024618          162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA  241 (265)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  241 (265)
                      ++.+-+.....+...-.+ +..+.+..+++.++.-..+++..+|.........|.+-.-.|...++...++.++.+.|.+
T Consensus       256 ~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~  334 (536)
T KOG4648|consen  256 DVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAV  334 (536)
T ss_pred             EeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeecccc
Confidence            776666554444433333 6677888889999998888888888776666666777777788888888999999888876


Q ss_pred             chhHH
Q 024618          242 DNAWQ  246 (265)
Q Consensus       242 ~~~~~  246 (265)
                      ..+-.
T Consensus       335 ~~~~~  339 (536)
T KOG4648|consen  335 ETPKE  339 (536)
T ss_pred             ccchh
Confidence            54433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.8e-11  Score=92.07  Aligned_cols=116  Identities=18%  Similarity=0.190  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---------------YSLWNKLGATQANSVQSADAILAYQRALDLKPN  206 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  206 (265)
                      .....|..+++.|+|..|...|++++..-+..               ..++.+++.++.++++|.+|+..+++++..+|+
T Consensus       210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~  289 (397)
T KOG0543|consen  210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN  289 (397)
T ss_pred             HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence            34555777788888888888888877642211               245778888888888888888888888888888


Q ss_pred             chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618          207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR  257 (265)
Q Consensus       207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  257 (265)
                      |..+++..|.++..+|+++.|+..|++++++.|+|..+...+..+-.+..+
T Consensus       290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~  340 (397)
T KOG0543|consen  290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE  340 (397)
T ss_pred             chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888887777777666555443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.35  E-value=3.9e-10  Score=96.27  Aligned_cols=215  Identities=13%  Similarity=0.070  Sum_probs=182.6

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc-CCChH----HHHhhhhhhhhhhhhHHHHHHHH
Q 024618           24 SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA-EPTNL----EVLLSLGVSHTNELEQAAALKYL   98 (265)
Q Consensus        24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~----~~~~~la~~~~~~~~~~~A~~~~   98 (265)
                      .+...-|++.+..+|+....|...-..+.+.++.++|.+.+++++.. ++...    .+|..+-.....-|.-+.-.+.|
T Consensus      1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred             CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence            34556688888999999999999999999999999999999999975 34322    34444444444445566677788


Q ss_pred             HHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CH
Q 024618           99 YGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ--DY  174 (265)
Q Consensus        99 ~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~  174 (265)
                      +++.+.........  ..+|...+.+++|.++++.+++.......+|..++..+++.++-+.|...+.+|++.-|.  +.
T Consensus      1521 eRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1521 ERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence            88877654333322  778899999999999999999998888999999999999999999999999999999998  67


Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC
Q 024618          175 SLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMN  238 (265)
Q Consensus       175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  238 (265)
                      ......+.+-++.|+.+.+...|+..+...|.-.+.|..+...-.+.|+.+.+...|++++.+.
T Consensus      1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            8888899999999999999999999999999999999999999999999999999999999864

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.34  E-value=2.3e-11  Score=89.44  Aligned_cols=101  Identities=16%  Similarity=0.191  Sum_probs=89.0

Q ss_pred             cchhhhHHH-HHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhh
Q 024618            9 NPLKEGQEL-FRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSL   81 (265)
Q Consensus         9 ~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l   81 (265)
                      ..+..|..+ +..|+|++|+..|++.++..|++   +.+++.+|.+|+..|++++|+..|.++++..|++   +++++.+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            356677776 56799999999999999999987   5799999999999999999999999999888774   7889999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKYG  109 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~  109 (265)
                      |.++...|++++|...|+++++..|+..
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            9999999999999999999999888753

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.32  E-value=1.2e-10  Score=89.91  Aligned_cols=120  Identities=23%  Similarity=0.295  Sum_probs=106.8

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (265)
                      ...+...++++.|+..+++..+.+|.   +...++.++...++..+|+..+.++++..|.+...+...+..+...++++.
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l  252 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL  252 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence            34556677899999999999888765   556688999899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618          193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL  235 (265)
Q Consensus       193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  235 (265)
                      |+...++++...|++...|+.|+.+|...|+++.|+..+..+-
T Consensus       253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999998877543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15331 chaperone protein SicA; Provisional

Probab=99.31  E-value=2.5e-11  Score=80.69  Aligned_cols=94  Identities=14%  Similarity=-0.018  Sum_probs=73.2

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      .+..|..++..|++++|..+|+-+...+|.+++.|..||.++..+++|++|+..|..+..+++++|...+..|.|+...|
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence            35567777778888888888887777777777777778888888888888888888877777777777777888888888


Q ss_pred             hHHHHHHHHHHHHh
Q 024618           90 EQAAALKYLYGWLR  103 (265)
Q Consensus        90 ~~~~A~~~~~~~~~  103 (265)
                      +.+.|..+|+.++.
T Consensus       120 ~~~~A~~~f~~a~~  133 (165)
T PRK15331        120 KAAKARQCFELVNE  133 (165)
T ss_pred             CHHHHHHHHHHHHh
Confidence            87777777777766

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.29  E-value=5.6e-09  Score=74.51  Aligned_cols=175  Identities=16%  Similarity=0.158  Sum_probs=135.4

Q ss_pred             ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 024618           40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL  116 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  116 (265)
                      .+..|+.-|...++.|++++|+..|+.+....|..   ..+...++.++++.+++++|+...++.+...|.++.      
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n------  106 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN------  106 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC------
Confidence            46688999999999999999999999999988875   468889999999999999999999999999998644      


Q ss_pred             hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCH--------------
Q 024618          117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS--------RQYDKAIESFQTALKLKPQDY--------------  174 (265)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~--------------  174 (265)
                                            -..+++..|.+++..        .-..+|+..+++.++..|++.              
T Consensus       107 ----------------------~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d  164 (254)
T COG4105         107 ----------------------ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLND  164 (254)
T ss_pred             ----------------------hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence                                  334444444443321        223456677777777777763              


Q ss_pred             ---HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618          175 ---SLWNKLGATQANSVQSADAILAYQRALDLKPNY---VRAWANMGISYANQGMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       175 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  242 (265)
                         ..-..+|..|.+.|.+..|+..++.+++..|+.   .+++..+..+|..+|-.++|...-.-.-...|+++
T Consensus       165 ~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~  238 (254)
T COG4105         165 ALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ  238 (254)
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence               223457888999999999999999999987765   46788899999999999998877655545555543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.29  E-value=8.5e-11  Score=76.51  Aligned_cols=88  Identities=28%  Similarity=0.226  Sum_probs=77.0

Q ss_pred             CCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH---H
Q 024618            3 PYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL---E   76 (265)
Q Consensus         3 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~   76 (265)
                      |..+...++..|...++.|+|++|++.|+.+....|..   ..+.+.+|.+|+..+++++|+..+++.++++|.++   -
T Consensus         6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY   85 (142)
T PF13512_consen    6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY   85 (142)
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence            55566778999999999999999999999999988764   56889999999999999999999999999999885   4


Q ss_pred             HHhhhhhhhhhhhh
Q 024618           77 VLLSLGVSHTNELE   90 (265)
Q Consensus        77 ~~~~la~~~~~~~~   90 (265)
                      +++..|.+++....
T Consensus        86 a~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   86 AYYMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHHHHhh
Confidence            77888888776654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.29  E-value=9.4e-11  Score=90.57  Aligned_cols=117  Identities=19%  Similarity=0.182  Sum_probs=107.0

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCC
Q 024618          144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM  223 (265)
Q Consensus       144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  223 (265)
                      -.+..++...++++.|+..+++..+.+|+   +...++.++...++..+|++.+.+++...|.+...+...+..+...++
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~  249 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK  249 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence            34455566778999999999999988765   667789999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618          224 YEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       224 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      ++.|+...+++++..|++...|..|+.+|..+|++++|+-
T Consensus       250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl  289 (395)
T PF09295_consen  250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL  289 (395)
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence            9999999999999999999999999999999999999964

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.29  E-value=7.2e-10  Score=82.31  Aligned_cols=230  Identities=17%  Similarity=0.162  Sum_probs=178.3

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChH---HHHHHHHHHhhcCcHHHHHHHHHHHHhcCC----C--hHHHH
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSE---GWRLLGIAHAENDDDQQAIAAMMRAHEAEP----T--NLEVL   78 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~--~~~~~   78 (265)
                      +.....|..++...++++|+..+.+.+..-.+...   .+-.+..+...+|.+++++.+.-..++...    .  .-+++
T Consensus         7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~   86 (518)
T KOG1941|consen    7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY   86 (518)
T ss_pred             HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999876544333   333356677888888887776555544322    1  24688


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC--------chhhhhhhhchHHHHHHHHHHHhcCCCC------HHHHH
Q 024618           79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI--------APPELSDSLYYADVARLFVEAARMSPED------ADVHI  144 (265)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~  144 (265)
                      .+++..+....++.+++.+-...+......+.-        .+..+...+.++++++.|+++++....+      ..+..
T Consensus        87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv  166 (518)
T KOG1941|consen   87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV  166 (518)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence            889999999999999999988887765444411        1778888899999999999999875433      25788


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCC----C------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC------Ccch
Q 024618          145 VLGVLYNLSRQYDKAIESFQTALKLKPQ----D------YSLWNKLGATQANSVQSADAILAYQRALDLK------PNYV  208 (265)
Q Consensus       145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~  208 (265)
                      .+|.++....|+++|..+..++.++..+    +      .-+++.++..+..+|..-.|.++.+++.++.      +...
T Consensus       167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a  246 (518)
T KOG1941|consen  167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA  246 (518)
T ss_pred             hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH
Confidence            8999999999999999999999876332    1      3457788999999999999999999988763      2334


Q ss_pred             hhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          209 RAWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      .....+|++|...|+.+.|..-|+++...
T Consensus       247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  247 RCLLCFADIYRSRGDLERAFRRYEQAMGT  275 (518)
T ss_pred             HHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence            56677999999999999999999988764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.6e-10  Score=87.04  Aligned_cols=100  Identities=25%  Similarity=0.282  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA  219 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  219 (265)
                      ..++.+++.++.++++|.+|+..++++|..+|+|..+++..|.++...|+++.|+..|++++++.|+|-.+...+..+-.
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             hcCCcHHH-HHHHHHHHhcCC
Q 024618          220 NQGMYEES-VRYYVRALAMNP  239 (265)
Q Consensus       220 ~~g~~~~A-~~~~~~a~~~~~  239 (265)
                      +..++.+. .+.|..++..-+
T Consensus       337 k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            77766554 788888887644

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.28  E-value=2e-11  Score=71.08  Aligned_cols=67  Identities=27%  Similarity=0.337  Sum_probs=61.4

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhh
Q 024618           17 LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGV   83 (265)
Q Consensus        17 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~   83 (265)
                      ++..|++++|+..|++++..+|+++.+++.+|.++...|++++|...+.+++..+|+++..+..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            4678999999999999999999999999999999999999999999999999999999888877664

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.27  E-value=1e-09  Score=75.86  Aligned_cols=207  Identities=14%  Similarity=0.049  Sum_probs=152.5

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      .+.+|..|-..|-+.-|..-|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|...-++.+.|..++.-|
T Consensus        68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~g  147 (297)
T COG4785          68 LFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG  147 (297)
T ss_pred             HHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecC
Confidence            46778888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCchhhhhh--hhchHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618           90 EQAAALKYLYGWLRHHPKYGTIAPPELSD--SLYYADVARLF-VEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA  166 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  166 (265)
                      ++.-|.+.+.+..+.+|++|.-..+.+..  .-++.+|..-+ +++...+.+ ...|.... .|  .|+.. -...++++
T Consensus       148 R~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~-~y--LgkiS-~e~l~~~~  222 (297)
T COG4785         148 RYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKE-QWGWNIVE-FY--LGKIS-EETLMERL  222 (297)
T ss_pred             chHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHh-hhhHHHHH-HH--Hhhcc-HHHHHHHH
Confidence            99999999999999999998765444443  33455665544 344333322 22222222 22  23222 12233344


Q ss_pred             HhhCCCC-------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc----hhhHHHHHHHHHhc
Q 024618          167 LKLKPQD-------YSLWNKLGATQANSVQSADAILAYQRALDLKPNY----VRAWANMGISYANQ  221 (265)
Q Consensus       167 ~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~  221 (265)
                      .....++       .++++.+|..+...|+.++|...|+-++..+--+    ..+.+.++.+....
T Consensus       223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~  288 (297)
T COG4785         223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQ  288 (297)
T ss_pred             HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccc
Confidence            3333333       4678999999999999999999999998765433    22344455544433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.27  E-value=1.4e-09  Score=80.86  Aligned_cols=248  Identities=15%  Similarity=0.066  Sum_probs=182.1

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-----HHHHhhh
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPE------NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-----LEVLLSL   81 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l   81 (265)
                      .....-..|.|++++..--..++...+      .-+++.+++..+....++.+++.+-+..+.+....     ..+...+
T Consensus        49 l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~  128 (518)
T KOG1941|consen   49 LVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSM  128 (518)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhH
Confidence            345566778888777655444332211      13477889999999999999999988888764333     3567779


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhchHHHHHHHHHHHhcCC----CC------HHH
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIA---------PPELSDSLYYADVARLFVEAARMSP----ED------ADV  142 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~----~~------~~~  142 (265)
                      +.++..++.++++++.|+++++...+..+..         +..+....++++|+-+..++..+..    ++      ..+
T Consensus       129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~  208 (518)
T KOG1941|consen  129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS  208 (518)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence            9999999999999999999998766554433         7888889999999998888877632    22      246


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc------chhh
Q 024618          143 HIVLGVLYNLSRQYDKAIESFQTALKLK------PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN------YVRA  210 (265)
Q Consensus       143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~  210 (265)
                      ++.++..+..+|+...|.++++++.++.      +-.......+|.+|...|+.+.|...|+.+......      ...+
T Consensus       209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~a  288 (518)
T KOG1941|consen  209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEA  288 (518)
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            7888999999999999999999998763      223566788999999999999999999999865322      2345


Q ss_pred             HHHHHHHHHhcCCcH-----HHHHHHHHHHhcCCCC------chhHHHHHHHHHHhCCccc
Q 024618          211 WANMGISYANQGMYE-----ESVRYYVRALAMNPKA------DNAWQYLRISLRYAGRYPN  260 (265)
Q Consensus       211 ~~~l~~~~~~~g~~~-----~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~  260 (265)
                      +...+.+.....-..     .|++.-++++++...-      ...+..++.+|..+|.-++
T Consensus       289 l~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~  349 (518)
T KOG1941|consen  289 LDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDE  349 (518)
T ss_pred             HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhH
Confidence            566666665544333     4888888888765432      2456678888877766543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.27  E-value=8.2e-09  Score=75.87  Aligned_cols=197  Identities=23%  Similarity=0.276  Sum_probs=171.8

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhh-hhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVL--KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGV-SHT   86 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~-~~~   86 (265)
                      ....+..+...+++..+...+...+.  ..+.....+...+......+++..++..+..++...+.........+. ++.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (291)
T COG0457          62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY  141 (291)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence            45678888899999999999999987  678888899999999999999999999999999988877666666666 899


Q ss_pred             hhhhHHHHHHHHHHHHhcCCC-CCCCc-----hhhhhhhhchHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHH
Q 024618           87 NELEQAAALKYLYGWLRHHPK-YGTIA-----PPELSDSLYYADVARLFVEAARMSPE-DADVHIVLGVLYNLSRQYDKA  159 (265)
Q Consensus        87 ~~~~~~~A~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A  159 (265)
                      ..|+++.|...+.+++...|. .....     +..+...++++.++..+.+++...+. ....+..++..+...+++..|
T Consensus       142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  221 (291)
T COG0457         142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA  221 (291)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHH
Confidence            999999999999999886663 11111     44456788999999999999999999 699999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618          160 IESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN  206 (265)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  206 (265)
                      ...+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         222 LEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            99999999999987778888888888777899999999999999887

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.22  E-value=1.5e-09  Score=92.85  Aligned_cols=208  Identities=18%  Similarity=0.117  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhc-CCCCC----CCc---hhhhhhhhchHHHHHH
Q 024618           57 DQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRH-HPKYG----TIA---PPELSDSLYYADVARL  128 (265)
Q Consensus        57 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~----~~~---~~~~~~~~~~~~a~~~  128 (265)
                      -.+..+-|++.+..+|+....|..........++.++|.+..++++.. ++...    ..|   .++...-|.-+...+.
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            345667889999999999999999999999999999999999999974 33322    222   3333444556667788


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc--
Q 024618          129 FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN--  206 (265)
Q Consensus       129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--  206 (265)
                      |+++.+... -..++..|..+|...+++++|.++++..++...+...+|...|..++.+++-+.|...+.+|++.-|.  
T Consensus      1520 FeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred             HHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence            888887643 25788899999999999999999999999998888999999999999999999999999999999998  


Q ss_pred             chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      +.......+++.++.|+.+.+...|+-.+.-.|.-.+.|.-+...-.+.|+.+.+..+|
T Consensus      1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred             hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHH
Confidence            67888889999999999999999999999999999999999998888888776655443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.21  E-value=1.1e-09  Score=78.69  Aligned_cols=105  Identities=20%  Similarity=0.208  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---hhhHHHHHH
Q 024618          143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNY---VRAWANMGI  216 (265)
Q Consensus       143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~  216 (265)
                      .+..|.-++..|+|..|...|..-++..|++   +.+++.||.+++.+|++++|...|..+.+..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7888888999999999999999999999987   6899999999999999999999999999988766   578999999


Q ss_pred             HHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618          217 SYANQGMYEESVRYYVRALAMNPKADNAWQY  247 (265)
Q Consensus       217 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  247 (265)
                      +...+|+.++|...|+++++..|+.+.+...
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999999999999998766443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.20  E-value=8.2e-11  Score=68.50  Aligned_cols=56  Identities=25%  Similarity=0.267  Sum_probs=23.0

Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch
Q 024618          153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV  208 (265)
Q Consensus       153 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  208 (265)
                      .|++++|+..|++++..+|+++.++..+|.++...|++++|...+++++..+|+++
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~   59 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP   59 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence            33444444444444444444444444444444444444444444444444444433

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.20  E-value=4.2e-10  Score=84.65  Aligned_cols=202  Identities=15%  Similarity=0.088  Sum_probs=130.4

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCC--CC----hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC--C----hHHHHh
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNP--EN----SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP--T----NLEVLL   79 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~----~~~~~~   79 (265)
                      ..|..+...|++++|...|.++....-  .+    ...+...+.++... ++++|+.++++++.+.-  .    -..++.
T Consensus        40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~  118 (282)
T PF14938_consen   40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLK  118 (282)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            447777788889999988888865431  11    23455566666555 88888888888887521  1    135667


Q ss_pred             hhhhhhhhh-hhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 024618           80 SLGVSHTNE-LEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDK  158 (265)
Q Consensus        80 ~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  158 (265)
                      .+|.+|... |++++|+.+|++++......           +...              .....+..+|.++...|+|++
T Consensus       119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e-----------~~~~--------------~a~~~~~~~A~l~~~l~~y~~  173 (282)
T PF14938_consen  119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQE-----------GSPH--------------SAAECLLKAADLYARLGRYEE  173 (282)
T ss_dssp             HHHHHHCCTT--HHHHHHHHHHHHHHHHHT-----------T-HH--------------HHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-----------CChh--------------hHHHHHHHHHHHHHHhCCHHH
Confidence            777777777 77777777776665432110           0000              113567788999999999999


Q ss_pred             HHHHHHHHHhhCCCC-------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch-----hhHHHHHHHHHh--cCCc
Q 024618          159 AIESFQTALKLKPQD-------YSLWNKLGATQANSVQSADAILAYQRALDLKPNYV-----RAWANMGISYAN--QGMY  224 (265)
Q Consensus       159 A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~--~g~~  224 (265)
                      |+..|+++....-++       ...++..+.+++..|++..|...+++....+|...     .....+-.++..  ...+
T Consensus       174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f  253 (282)
T PF14938_consen  174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAF  253 (282)
T ss_dssp             HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCH
T ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHH
Confidence            999999988753221       13456778899999999999999999998887543     334444444443  3457


Q ss_pred             HHHHHHHHHHHhcCC
Q 024618          225 EESVRYYVRALAMNP  239 (265)
Q Consensus       225 ~~A~~~~~~a~~~~~  239 (265)
                      ++|+.-|.+..+++|
T Consensus       254 ~~av~~~d~~~~ld~  268 (282)
T PF14938_consen  254 TEAVAEYDSISRLDN  268 (282)
T ss_dssp             HHHCHHHTTSS---H
T ss_pred             HHHHHHHcccCccHH
Confidence            888888887766654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.20  E-value=3.8e-10  Score=81.11  Aligned_cols=100  Identities=23%  Similarity=0.265  Sum_probs=92.5

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGV   83 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~   83 (265)
                      .++.|..++..|+|..|...|..-++..|++   +.+++.||.+++.+|++++|...|..+++..|++   |++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6889999999999999999999999999876   5799999999999999999999999999987765   689999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHhcCCCCC
Q 024618           84 SHTNELEQAAALKYLYGWLRHHPKYG  109 (265)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~~~~~~~~~  109 (265)
                      +...+|+.++|...|+++++..|+..
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            99999999999999999999988754

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.20  E-value=2.1e-08  Score=79.89  Aligned_cols=187  Identities=11%  Similarity=0.086  Sum_probs=123.4

Q ss_pred             cCcHHHHHHHHHHHHhc-CCC-----hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc-------hhhhhhhh
Q 024618           54 NDDDQQAIAAMMRAHEA-EPT-----NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA-------PPELSDSL  120 (265)
Q Consensus        54 ~~~~~~A~~~~~~~~~~-~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~~~~  120 (265)
                      .|+..+-+..|..+++. +|.     ....|..+|..|...|+.+.|...|+++.+..-....-+       +..-....
T Consensus       360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~  439 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE  439 (835)
T ss_pred             cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence            34455555556555542 332     235677777777778888888888887777654433222       55555666


Q ss_pred             chHHHHHHHHHHHhcCCC------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024618          121 YYADVARLFVEAARMSPE------------------DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGA  182 (265)
Q Consensus       121 ~~~~a~~~~~~~~~~~~~------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  182 (265)
                      +++.|+++++++...-..                  ...+|..++......|-++.....|++++.+.--.|....+.|.
T Consensus       440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm  519 (835)
T KOG2047|consen  440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM  519 (835)
T ss_pred             hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            777777777776643111                  13467777777777888888888888888877777888888888


Q ss_pred             HHHhhcCcHHHHHHHHHHHhcCC--cchhhHHHH---HHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          183 TQANSVQSADAILAYQRALDLKP--NYVRAWANM---GISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       183 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l---~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      .+....-++++.+.|++.+.+.+  .-.+.|...   ...-+.--..+.|...|+++++..|.
T Consensus       520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp  582 (835)
T KOG2047|consen  520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP  582 (835)
T ss_pred             HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence            88888888888888888887753  333444332   22222233578888888888887773

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.19  E-value=1.4e-10  Score=68.50  Aligned_cols=65  Identities=25%  Similarity=0.381  Sum_probs=38.5

Q ss_pred             HHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618          182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ  246 (265)
Q Consensus       182 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  246 (265)
                      .++...+++++|++.+++++..+|+++..+..+|.++..+|++++|+..++++++..|+++.+..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            44555566666666666666666666666666666666666666666666666666665554433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.17  E-value=7.1e-10  Score=75.57  Aligned_cols=105  Identities=23%  Similarity=0.303  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 024618          143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQDY-----SLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS  217 (265)
Q Consensus       143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  217 (265)
                      +..-|.-++..|+|++|...|..++...|..+     ..+.+.|.+..+++.++.|+..+.++++++|.+..++...+.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            33446666777777777777777777776653     3456667777777777777777777777777777777777777


Q ss_pred             HHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618          218 YANQGMYEESVRYYVRALAMNPKADNAWQY  247 (265)
Q Consensus       218 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  247 (265)
                      |.++.++++|++-|++.++.+|....+...
T Consensus       178 yek~ek~eealeDyKki~E~dPs~~ear~~  207 (271)
T KOG4234|consen  178 YEKMEKYEEALEDYKKILESDPSRREAREA  207 (271)
T ss_pred             HHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence            777777777777777777777766544433

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=1.2e-08  Score=72.84  Aligned_cols=163  Identities=15%  Similarity=-0.012  Sum_probs=132.9

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC-----chhhhh
Q 024618           43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI-----APPELS  117 (265)
Q Consensus        43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~  117 (265)
                      ....-|.++.+.|++++|.....+.     .+.++...-..++.++.+.+-|...+++..+.+.+....     |..+..
T Consensus       110 ~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~  184 (299)
T KOG3081|consen  110 DLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLAT  184 (299)
T ss_pred             HHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhc
Confidence            4445677899999999999887763     455666666678889999999999999999888765433     234444


Q ss_pred             hhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHH-H
Q 024618          118 DSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL-A  196 (265)
Q Consensus       118 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~  196 (265)
                      ..+...+|.-+|++.-...|..+......+.+++.+|+|++|...++.++..++++|+++.++..+-...|...++.. .
T Consensus       185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN  264 (299)
T ss_pred             cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence            556789999999999997777899999999999999999999999999999999999999999999999998877665 4


Q ss_pred             HHHHHhcCCcchhh
Q 024618          197 YQRALDLKPNYVRA  210 (265)
Q Consensus       197 ~~~~~~~~~~~~~~  210 (265)
                      +.+....+|+++.+
T Consensus       265 l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  265 LSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHHhcCCcchHH
Confidence            55566667776543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.17  E-value=3.2e-10  Score=66.97  Aligned_cols=70  Identities=19%  Similarity=0.204  Sum_probs=61.8

Q ss_pred             hHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhh
Q 024618           14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGV   83 (265)
Q Consensus        14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~   83 (265)
                      ...++..+++++|+..+++++..+|+++..+..+|.++...|++.+|+..++++++..|+++.+....+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            4678899999999999999999999999999999999999999999999999999999988877665543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.16  E-value=1.9e-09  Score=69.22  Aligned_cols=96  Identities=19%  Similarity=0.171  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc---chhhHHHH
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPN---YVRAWANM  214 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l  214 (265)
                      .+++.+|.++-..|+.++|+..|++++......   ..++..+|..+...|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467888889999999999999999998865443   567888999999999999999999999888787   66777778


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHh
Q 024618          215 GISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       215 ~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      +.++...|++++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8889999999999998887765

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.16  E-value=1.5e-09  Score=69.67  Aligned_cols=99  Identities=19%  Similarity=0.145  Sum_probs=75.4

Q ss_pred             HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 024618           76 EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ  155 (265)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  155 (265)
                      .+++.+|.++-..|+.++|+..|++++.....                            .+....++..+|..+...|+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~----------------------------~~~~~~a~i~lastlr~LG~   53 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLS----------------------------GADRRRALIQLASTLRNLGR   53 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------------------chHHHHHHHHHHHHHHHcCC
Confidence            45566667777777766666666666554332                            12235678889999999999


Q ss_pred             HHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618          156 YDKAIESFQTALKLKPQ---DYSLWNKLGATQANSVQSADAILAYQRALD  202 (265)
Q Consensus       156 ~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  202 (265)
                      +++|+..+++.+...|+   +..+...++.++...|+.++|+..+-.++.
T Consensus        54 ~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   54 YDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999988888   677888888999999999999998887764

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.12  E-value=8.6e-11  Score=86.54  Aligned_cols=195  Identities=9%  Similarity=-0.045  Sum_probs=131.1

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhh
Q 024618           44 WRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSL  120 (265)
Q Consensus        44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~  120 (265)
                      .-..|+.|+.+|.|++|+.+|.+++..+|.++..+.+.+.+|++...+..|...+..++.++......+   +..-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            345788999999999999999999999999999999999999999999999988888888766554444   55556677


Q ss_pred             chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH---------HHHHHHHHhhcCcH
Q 024618          121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLW---------NKLGATQANSVQSA  191 (265)
Q Consensus       121 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~  191 (265)
                      ...+|.+-++.++++.|.+.+....++.+-.    ..++.    -+.+..|....+.         -.-|..+.+.|.++
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~----I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~  251 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERK----IATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS  251 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhh----HHhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence            7777777777777777776555444443321    11110    1111122211111         12345566667777


Q ss_pred             HHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618          192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY  247 (265)
Q Consensus       192 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  247 (265)
                      .++.++.+-+.....+...-.+ +..+.+.-+++.++.-..+++..+|........
T Consensus       252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~  306 (536)
T KOG4648|consen  252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSG  306 (536)
T ss_pred             cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCC
Confidence            7777776655544444333333 667777888899998888888877765443333

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=99.11  E-value=1.3e-08  Score=68.74  Aligned_cols=146  Identities=18%  Similarity=0.167  Sum_probs=81.4

Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618           87 NELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAAR-MSPEDADVHIVLGVLYNLSRQYDKAIESF  163 (265)
Q Consensus        87 ~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  163 (265)
                      ..-+.+.......+.+...|....-+  +..+...|++.+|...|++++. +..+++..+..++...+..+++..|...+
T Consensus        68 q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL  147 (251)
T COG4700          68 QKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL  147 (251)
T ss_pred             HhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence            33344555555555555555544333  5556666666666666666554 33455555666666666666666666666


Q ss_pred             HHHHhhCCC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHH
Q 024618          164 QTALKLKPQ--DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR  233 (265)
Q Consensus       164 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  233 (265)
                      ++..+.+|.  +|+....+|..+...|++.+|...|+.++...|. +.+....+..+.++|+..+|..-+..
T Consensus       148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            666655543  3455555666666666666666666666665555 34445555555666655555544433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=99.11  E-value=1.9e-07  Score=70.50  Aligned_cols=242  Identities=17%  Similarity=0.087  Sum_probs=157.6

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCCh-HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENS-EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE   90 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   90 (265)
                      ..++...-.|+++.|.+-|+.++. +|+.- -.+..+-......|+.+-|+.+.+++-...|.-+.++...-...+..|+
T Consensus       125 LeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gd  203 (531)
T COG3898         125 LEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGD  203 (531)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCC
Confidence            346667778888888888887754 33321 1222333334567888888888888888888888888777777888888


Q ss_pred             HHHHHHHHHHHHhcC---CCCCCCc------hh-hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 024618           91 QAAALKYLYGWLRHH---PKYGTIA------PP-ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAI  160 (265)
Q Consensus        91 ~~~A~~~~~~~~~~~---~~~~~~~------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  160 (265)
                      ++.|++..+......   ++...-.      +. .-....+...|...-..+.++.|+....-..-+..+++.|+..++-
T Consensus       204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~  283 (531)
T COG3898         204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGS  283 (531)
T ss_pred             hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhh
Confidence            888888887655432   1111111      11 1111234566777777888888888777777788888888888888


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHH---HHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQ---RALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      .+++.+.+..|. |.+    +.+|....--+.++.-++   +...+.|++.+.....+..-..-|++..|..--+.+...
T Consensus       284 ~ilE~aWK~ePH-P~i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~  358 (531)
T COG3898         284 KILETAWKAEPH-PDI----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE  358 (531)
T ss_pred             hHHHHHHhcCCC-hHH----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            888888887765 332    233333322233333333   334557778888888888888888888888888888877


Q ss_pred             CCCCchhHHHHHHHHHHh-CCccc
Q 024618          238 NPKADNAWQYLRISLRYA-GRYPN  260 (265)
Q Consensus       238 ~~~~~~~~~~l~~~~~~~-~~~~~  260 (265)
                      .|. ..++..++.+-... |+-.+
T Consensus       359 ~pr-es~~lLlAdIeeAetGDqg~  381 (531)
T COG3898         359 APR-ESAYLLLADIEEAETGDQGK  381 (531)
T ss_pred             Cch-hhHHHHHHHHHhhccCchHH
Confidence            776 34455555555433 54443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.10  E-value=8.4e-09  Score=67.32  Aligned_cols=105  Identities=19%  Similarity=0.179  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch---hhHHH
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNYV---RAWAN  213 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~  213 (265)
                      +..++.-|...++.|+|++|++.|+.+....|..   ..+...+|.+|++.+++++|+..+++-++++|.++   .+++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            5678888999999999999999999999887765   57888999999999999999999999999999875   57888


Q ss_pred             HHHHHHhcCC---------------cHHHHHHHHHHHhcCCCCchh
Q 024618          214 MGISYANQGM---------------YEESVRYYVRALAMNPKADNA  244 (265)
Q Consensus       214 l~~~~~~~g~---------------~~~A~~~~~~a~~~~~~~~~~  244 (265)
                      .|.+++.+..               ..+|...|++.++..|++.-+
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            8998888876               889999999999999987543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.07  E-value=4.6e-07  Score=75.01  Aligned_cols=226  Identities=11%  Similarity=-0.062  Sum_probs=162.8

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHH
Q 024618           15 QELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAA   94 (265)
Q Consensus        15 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A   94 (265)
                      .-....+++.+|+....++++..|+...+....|.++.++|..++|..+++..-...+++...+..+-.+|..+++.++|
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence            34567899999999999999999999999999999999999999999888888888888888999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHH---------HHHH
Q 024618           95 LKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYN-LSRQYD---------KAIE  161 (265)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~---------~A~~  161 (265)
                      ..+|+++...+|. ....   -..+.+.+.+.+-.+.--+.-+..|.++..++....+.. .....+         -|..
T Consensus        97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~  175 (932)
T KOG2053|consen   97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK  175 (932)
T ss_pred             HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence            9999999999999 3333   334455555555444444555577887755444444333 333222         3445


Q ss_pred             HHHHHHhhC-CCCHH-HHHHHHHHHHhhcCcHHHHHHHHHH-HhcC-CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          162 SFQTALKLK-PQDYS-LWNKLGATQANSVQSADAILAYQRA-LDLK-PNYVRAWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       162 ~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      .+++.++.. +-... =....-.++..+|++++|...+..- .+.. +.+...-......+...+++.+-.+...+++..
T Consensus       176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            556666554 21111 1222334566789999999998433 3333 333344445667777888999988888898888


Q ss_pred             CCCC
Q 024618          238 NPKA  241 (265)
Q Consensus       238 ~~~~  241 (265)
                      .+++
T Consensus       256 ~~Dd  259 (932)
T KOG2053|consen  256 GNDD  259 (932)
T ss_pred             CCcc
Confidence            8886

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=5.4e-09  Score=71.39  Aligned_cols=105  Identities=17%  Similarity=0.194  Sum_probs=86.8

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPED-----ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANS  187 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  187 (265)
                      |.-++..|++.+|...|..++...|..     ...+.+.|.++++++.++.|+..+.++++++|.+..++...+.+|.++
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            445566666777777777777766654     346778899999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 024618          188 VQSADAILAYQRALDLKPNYVRAWANMGIS  217 (265)
Q Consensus       188 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  217 (265)
                      .++++|+.-|+++++.+|....+.-.+..+
T Consensus       182 ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             hhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            999999999999999999877665555444

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.03  E-value=8.7e-08  Score=76.54  Aligned_cols=189  Identities=13%  Similarity=0.093  Sum_probs=81.6

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCC----ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC--------------
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPE----NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT--------------   73 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------------   73 (265)
                      ..|..|...|+.+.|..+|+++++..-.    -..+|...|..-+...+++.|.++.+++...-..              
T Consensus       392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~  471 (835)
T KOG2047|consen  392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA  471 (835)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence            4455555555555555555555443311    1234444555555555555555555555432111              


Q ss_pred             ----hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCC--CCHHHHH
Q 024618           74 ----NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSP--EDADVHI  144 (265)
Q Consensus        74 ----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~  144 (265)
                          +..+|..++......|-++.....|++++.+.--.|...   +..+....-++++.+.|++.+.+.+  .-.++|.
T Consensus       472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~  551 (835)
T KOG2047|consen  472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN  551 (835)
T ss_pred             HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence                112344444444444444444555555544433322222   4444444445555555555555432  2223333


Q ss_pred             HHHH---HHHHccCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618          145 VLGV---LYNLSRQYDKAIESFQTALKLKPQDY--SLWNKLGATQANSVQSADAILAYQRA  200 (265)
Q Consensus       145 ~l~~---~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~  200 (265)
                      ..-.   .-+.....+.|..+|+++++..|...  .++...+..-..-|--..|+..|+++
T Consensus       552 tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera  612 (835)
T KOG2047|consen  552 TYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA  612 (835)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            2221   11222345555555555555444211  12223333333334444444444444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=99.01  E-value=7.5e-08  Score=65.19  Aligned_cols=138  Identities=19%  Similarity=0.209  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618          123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK-LKPQDYSLWNKLGATQANSVQSADAILAYQRAL  201 (265)
Q Consensus       123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  201 (265)
                      +....-..+.+...|. ..-.+.+|..+.+.|++.+|...|++++. +..+++..+..++...+..+++..|...+++..
T Consensus        73 ~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~  151 (251)
T COG4700          73 ERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM  151 (251)
T ss_pred             hHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence            3344444444455554 34456677777777777777777777765 455667777777777777777777777777777


Q ss_pred             hcCCc--chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccc
Q 024618          202 DLKPN--YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRG  262 (265)
Q Consensus       202 ~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  262 (265)
                      +.+|.  .++....+|..+...|++.+|...|+.++...|+ +.+....+..+.++|+..+|.
T Consensus       152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~  213 (251)
T COG4700         152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREAN  213 (251)
T ss_pred             hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHH
Confidence            77664  3566677777777777777777777777777776 566666777777777666654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.00  E-value=2.5e-09  Score=82.57  Aligned_cols=70  Identities=20%  Similarity=0.209  Sum_probs=65.0

Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhhcCcHHHHHHHHHHHhcC
Q 024618          135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSL---WNKLGATQANSVQSADAILAYQRALDLK  204 (265)
Q Consensus       135 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~  204 (265)
                      .+|+++..++++|.++...|++++|+..|+++++++|++..+   |+++|.+|..+|++++|+.+++++++..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            478899999999999999999999999999999999999854   9999999999999999999999999873

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=5.7e-07  Score=63.22  Aligned_cols=62  Identities=18%  Similarity=0.287  Sum_probs=27.5

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618          146 LGVLYNLSRQYDKAIESFQTALKLKPQDY-------SLWNKLGATQANSVQSADAILAYQRALDLKPNY  207 (265)
Q Consensus       146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  207 (265)
                      .+..-...++|.+|+..|++.....-+++       ..++.-|.|++-..+.-.+...+++-.+.+|..
T Consensus       160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F  228 (288)
T KOG1586|consen  160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF  228 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence            34444444555555555555444333322       223333444444444444444444444455543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.94  E-value=1.8e-08  Score=67.88  Aligned_cols=86  Identities=26%  Similarity=0.247  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC--
Q 024618          122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ----------YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ--  189 (265)
Q Consensus       122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  189 (265)
                      ++.|.+.++.....+|.+.+.++.-|.++..+.+          +++|+.-|++++.++|+...++..+|.++...+.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            5667777777777777777777777776665533          3456666666667777777777777777665442  


Q ss_pred             ---------cHHHHHHHHHHHhcCCcc
Q 024618          190 ---------SADAILAYQRALDLKPNY  207 (265)
Q Consensus       190 ---------~~~A~~~~~~~~~~~~~~  207 (265)
                               |++|..+|+++...+|++
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                     445555555555555554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.94  E-value=6.9e-08  Score=65.16  Aligned_cols=102  Identities=23%  Similarity=0.252  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHH---HHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHH
Q 024618           57 DQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQA---AALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA  133 (265)
Q Consensus        57 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  133 (265)
                      ++.|.+.++.....+|.+++.+++.|.++..+.++.   ++..++                        ++|+.-|++++
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~mi------------------------edAisK~eeAL   62 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMI------------------------EDAISKFEEAL   62 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHH------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHH------------------------HHHHHHHHHHH
Confidence            678888999999999999999999999988887663   344443                        67778899999


Q ss_pred             hcCCCCHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024618          134 RMSPEDADVHIVLGVLYNLSRQ-----------YDKAIESFQTALKLKPQDYSLWNKLGA  182 (265)
Q Consensus       134 ~~~~~~~~~~~~l~~~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~~~l~~  182 (265)
                      .++|+...+++.+|.++...+.           |++|..+|+++...+|++......|..
T Consensus        63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            9999999999999999886653           788889999999999998765554443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.93  E-value=1.4e-09  Score=65.08  Aligned_cols=64  Identities=28%  Similarity=0.475  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHhhcCcHHHHHHHHHHHhc----CCc---chhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          174 YSLWNKLGATQANSVQSADAILAYQRALDL----KPN---YVRAWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      ..++.++|.++..+|++++|+.+|++++++    .++   ...++.++|.++..+|++++|++++++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            455666677777777777777777766654    111   2345666777777777777777777777654

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.93  E-value=9e-09  Score=79.57  Aligned_cols=57  Identities=18%  Similarity=0.112  Sum_probs=42.5

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADV---HIVLGVLYNLSRQYDKAIESFQTALKL  169 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~  169 (265)
                      |..+...|++++|+..|+++++++|++..+   |+++|.+|..+|+.++|+..++++++.
T Consensus        82 G~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         82 GLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            667777777777777777777777777643   777777777777777777777777776

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.92  E-value=1.5e-07  Score=59.78  Aligned_cols=98  Identities=20%  Similarity=0.249  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc----hhhHHHHHHHH
Q 024618          143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY----VRAWANMGISY  218 (265)
Q Consensus       143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~  218 (265)
                      +-..|..+...|+.+.|++.|.+++.+.|..+.++.+.+..+.-+|+.++|+.-+++++++....    ..++...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            44557778888999999999999999999999999999999999999999999999999886543    35677889999


Q ss_pred             HhcCCcHHHHHHHHHHHhcCCC
Q 024618          219 ANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       219 ~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      ...|+.+.|..-|+.+-++...
T Consensus       126 Rl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHhCchHHHHHhHHHHHHhCCH
Confidence            9999999999999888776544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.87  E-value=3.5e-06  Score=60.53  Aligned_cols=66  Identities=15%  Similarity=0.125  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN  206 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  206 (265)
                      .+..+.+.++...+++.+|...+.+++..+|.++.+..+.+.|....|+...|++.++.+++..|.
T Consensus       253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             HHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            344455555555556666666666666666666666666666666666666666666666655554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.85  E-value=3.7e-09  Score=63.28  Aligned_cols=67  Identities=27%  Similarity=0.403  Sum_probs=56.7

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---CC----CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618          137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKL---KP----QDYSLWNKLGATQANSVQSADAILAYQRALDL  203 (265)
Q Consensus       137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  203 (265)
                      |+-..++..+|.++...|++++|+.+|++++++   .+    ....++.++|.++...|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344678899999999999999999999999975   22    22567899999999999999999999999875

...

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.84  E-value=3.6e-07  Score=58.12  Aligned_cols=94  Identities=16%  Similarity=0.105  Sum_probs=63.7

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh----HHHHhhhhhhhhhh
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN----LEVLLSLGVSHTNE   88 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~   88 (265)
                      .|..+...|+.+.|++.|.+++...|..+.++.+.+..+.-.|+.++|+.-+.+++++..+.    -.++...|.+|...
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            35566667777777777777777777777777777777777777777777777777764432    23566667777777


Q ss_pred             hhHHHHHHHHHHHHhcCC
Q 024618           89 LEQAAALKYLYGWLRHHP  106 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~  106 (265)
                      |+-+.|..-|+.+.++..
T Consensus       129 g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLGS  146 (175)
T ss_pred             CchHHHHHhHHHHHHhCC
Confidence            777777777766665543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.84  E-value=7.1e-06  Score=68.27  Aligned_cols=196  Identities=17%  Similarity=0.111  Sum_probs=142.1

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE   90 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   90 (265)
                      .-.|..+++.|+.++|..+++..-...+++...+-.+-.+|..++++++|..+|++++..+|+ .+..+.+-.+|.+.+.
T Consensus        47 vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~  125 (932)
T KOG2053|consen   47 VLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKS  125 (932)
T ss_pred             HHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHH
Confidence            456889999999999998888877777888888889999999999999999999999999999 8888888889999888


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCc----hhhhhhhhc---------hHHHHHHHHHHHhcC-CCCHH-HHHHHHHHHHHccC
Q 024618           91 QAAALKYLYGWLRHHPKYGTIA----PPELSDSLY---------YADVARLFVEAARMS-PEDAD-VHIVLGVLYNLSRQ  155 (265)
Q Consensus        91 ~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~~~---------~~~a~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~  155 (265)
                      |.+--+.--+..+..|+.+...    ..++.....         ..-|.+.+++.++.. +-... -....-.++...|+
T Consensus       126 yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k  205 (932)
T KOG2053|consen  126 YKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGK  205 (932)
T ss_pred             HHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhccc
Confidence            8876666666666777776554    111111111         233555666666655 22211 12223345667888


Q ss_pred             HHHHHHHHHHH-Hh-hCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618          156 YDKAIESFQTA-LK-LKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY  207 (265)
Q Consensus       156 ~~~A~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  207 (265)
                      +++|.+.+..- .+ ..+.+...-...+..+...+++.+-.+...+++..++++
T Consensus       206 ~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  206 YQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence            99999998433 33 334444444556667778888888888888888888886

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.83  E-value=9.9e-07  Score=63.25  Aligned_cols=185  Identities=12%  Similarity=0.067  Sum_probs=96.8

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHH
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQA   92 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   92 (265)
                      .|......|+..+.+.-+......-.       .+-.........+..++.+++-+      ..+.+.+..++...|+|.
T Consensus       128 hAe~~~~lgnpqesLdRl~~L~~~V~-------~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~  194 (366)
T KOG2796|consen  128 HAELQQYLGNPQESLDRLHKLKTVVS-------KILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYV  194 (366)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHH-------HHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhh
Confidence            46667778888888776665532110       11111111112233444444332      234455555555555555


Q ss_pred             HHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--
Q 024618           93 AALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK--  170 (265)
Q Consensus        93 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--  170 (265)
                      -++..+.+.++.+|.                              .++.....+|.+.++.||.+.|..+++..-+.+  
T Consensus       195 iS~d~~~~vi~~~~e------------------------------~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k  244 (366)
T KOG2796|consen  195 LSVDAYHSVIKYYPE------------------------------QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK  244 (366)
T ss_pred             hhHHHHHHHHHhCCc------------------------------ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence            555555555554432                              334455555555555555555555555332221  


Q ss_pred             ----CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          171 ----PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       171 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                          .....+..+.+.++.-.+++.+|...+.+++..+|.++.+..+.+.|....|+..+|++.++.+++..|.
T Consensus       245 L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  245 LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             hhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence                1123344455555555666666666666666666666666666666666666666666666666666554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.80  E-value=1e-05  Score=61.45  Aligned_cols=245  Identities=13%  Similarity=-0.004  Sum_probs=176.5

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-HHHHhhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPEN--SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-LEVLLSLGVSHTN   87 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~   87 (265)
                      +..|.+....|+-..|.+.-.+.-+.-..+  +-++..-+..-...|+++.|.+-|+.++. +|.. .-.+..|-.--..
T Consensus        88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr  166 (531)
T COG3898          88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR  166 (531)
T ss_pred             HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence            455677777888888888887776444333  44555667888889999999999998876 3322 1122222233346


Q ss_pred             hhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhc---CCCCH-----HHHHHHHHHHHHccCH
Q 024618           88 ELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARM---SPEDA-----DVHIVLGVLYNLSRQY  156 (265)
Q Consensus        88 ~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-----~~~~~l~~~~~~~~~~  156 (265)
                      .|..+.|..+-+.+....|..+...   ....+..|+|+.|+++.+.....   .++..     ..+...+... -.-+.
T Consensus       167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp  245 (531)
T COG3898         167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADP  245 (531)
T ss_pred             cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCCh
Confidence            8999999999999999999988776   56677889999999999876543   22221     1222222222 23468


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHH---H
Q 024618          157 DKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYV---R  233 (265)
Q Consensus       157 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---~  233 (265)
                      ..|...-.++.++.|+....-..-+..++..|+..++-..++.+.+..|. +.++  +..++.+.|+  .++.-++   +
T Consensus       246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia--~lY~~ar~gd--ta~dRlkRa~~  320 (531)
T COG3898         246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIA--LLYVRARSGD--TALDRLKRAKK  320 (531)
T ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH--HHHHHhcCCC--cHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999998887 3332  2223344554  4444444   4


Q ss_pred             HHhcCCCCchhHHHHHHHHHHhCCccccc
Q 024618          234 ALAMNPKADNAWQYLRISLRYAGRYPNRG  262 (265)
Q Consensus       234 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  262 (265)
                      ...+.|++.+....++..-...|++..|.
T Consensus       321 L~slk~nnaes~~~va~aAlda~e~~~AR  349 (531)
T COG3898         321 LESLKPNNAESSLAVAEAALDAGEFSAAR  349 (531)
T ss_pred             HHhcCccchHHHHHHHHHHHhccchHHHH
Confidence            45678999999988988888888876553

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.78  E-value=9.4e-07  Score=68.72  Aligned_cols=120  Identities=16%  Similarity=0.056  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-----HhhcCcHHHHHHHHHHH------h--------
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQ-----ANSVQSADAILAYQRAL------D--------  202 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~------~--------  202 (265)
                      ++-..+.+-...|+.-.|+..-.+.++. |+-..++..+|.+|     ..+++..+|..++.--+      .        
T Consensus       511 i~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df  589 (696)
T KOG2471|consen  511 IFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDF  589 (696)
T ss_pred             HHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhh
Confidence            4555666778899999999999998876 55666666666655     45677777776554311      0        


Q ss_pred             ---------cCCc----------c-----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHhC
Q 024618          203 ---------LKPN----------Y-----VRAWANMGISYANQGMYEESVRYYVRALAMNP--KADNAWQYLRISLRYAG  256 (265)
Q Consensus       203 ---------~~~~----------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~  256 (265)
                               ++|.          .     ...++++|.++.-+|++++|..++..+..+-|  .++.+......+-.++|
T Consensus       590 ~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G  669 (696)
T KOG2471|consen  590 DQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLG  669 (696)
T ss_pred             hhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcC
Confidence                     0111          0     13568899999999999999999999988877  34555544445556777


Q ss_pred             Cccccc
Q 024618          257 RYPNRG  262 (265)
Q Consensus       257 ~~~~A~  262 (265)
                      +...|.
T Consensus       670 ~~q~al  675 (696)
T KOG2471|consen  670 RSQDAL  675 (696)
T ss_pred             CCcchH
Confidence            776664

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=2.3e-08  Score=70.16  Aligned_cols=95  Identities=15%  Similarity=0.104  Sum_probs=89.9

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ   91 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   91 (265)
                      ..|..++...+|..|+..|.+++..+|..+..+.+.+.|+++..+++.+.....++++++|+....++.+|.+......+
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            56888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 024618           92 AAALKYLYGWLRHHP  106 (265)
Q Consensus        92 ~~A~~~~~~~~~~~~  106 (265)
                      ++|+..+.++..+..
T Consensus        95 ~eaI~~Lqra~sl~r  109 (284)
T KOG4642|consen   95 DEAIKVLQRAYSLLR  109 (284)
T ss_pred             cHHHHHHHHHHHHHh
Confidence            999999999976543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.77  E-value=2.4e-06  Score=70.70  Aligned_cols=127  Identities=18%  Similarity=0.190  Sum_probs=79.1

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCC--------------HHHHHHHHHHHHhhc-CcHHHHH
Q 024618          137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKL------KPQD--------------YSLWNKLGATQANSV-QSADAIL  195 (265)
Q Consensus       137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~--------------~~~~~~l~~~~~~~~-~~~~A~~  195 (265)
                      ..+..+-+.+|+.|...|++.+|+..|.++-..      ...+              +.-....+..|...| ..+.|..
T Consensus       964 sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVm 1043 (1416)
T KOG3617|consen  964 SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVM 1043 (1416)
T ss_pred             cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHH
Confidence            455678899999999999999999999877432      1111              111122223333333 4444444


Q ss_pred             HHHHH------H-----------------hcCC-cchhhHHHHHHHHHhcCCcHHHHHHHHH------HHhc--------
Q 024618          196 AYQRA------L-----------------DLKP-NYVRAWANMGISYANQGMYEESVRYYVR------ALAM--------  237 (265)
Q Consensus       196 ~~~~~------~-----------------~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~------a~~~--------  237 (265)
                      .|.++      +                 .++| .+|..+...+..+....+|++|...+-.      ++.+        
T Consensus      1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~v 1123 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRV 1123 (1416)
T ss_pred             HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence            43332      1                 1133 4577788888899999999999877644      3332        


Q ss_pred             --------CCCC---------chhHHHHHHHHHHhCCcccccc
Q 024618          238 --------NPKA---------DNAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       238 --------~~~~---------~~~~~~l~~~~~~~~~~~~A~~  263 (265)
                              .|..         ...+..+|.++.++|.|..|-+
T Consensus      1124 tee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1124 TEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred             hHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence                    1211         2467778999999999877654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=4.7e-07  Score=67.10  Aligned_cols=154  Identities=10%  Similarity=-0.042  Sum_probs=99.6

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcc
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARM-SPED---ADVHIVLGVLYNLSR  154 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~  154 (265)
                      +.+....|++.+|...+++.++..|.+...+   -..+...|+...-...+++++-. +|+.   ..+.-.++..+...|
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            3444556677777777777777777766555   55666667777777777776655 5554   344445566667777


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc----hhhHHHHHHHHHhcCCcHHHHHH
Q 024618          155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY----VRAWANMGISYANQGMYEESVRY  230 (265)
Q Consensus       155 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~  230 (265)
                      -+++|.+..+++++++|.+..+...++.++...+++.++.++..+.-..-...    ..-|...+.++...+.|+.|++.
T Consensus       190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            77777777777777777777777777777777777777777766532211110    12234456666677777777777


Q ss_pred             HHHHH
Q 024618          231 YVRAL  235 (265)
Q Consensus       231 ~~~a~  235 (265)
                      |.+-+
T Consensus       270 yD~ei  274 (491)
T KOG2610|consen  270 YDREI  274 (491)
T ss_pred             HHHHH
Confidence            76654

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=3.7e-08  Score=69.18  Aligned_cols=90  Identities=20%  Similarity=0.133  Sum_probs=52.6

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (265)
                      +..+....++..|+..|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+....++.+|.+......+++
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence            33444445555566666666666666555555666666666666666666666666666665666666666666666666


Q ss_pred             HHHHHHHHHh
Q 024618          193 AILAYQRALD  202 (265)
Q Consensus       193 A~~~~~~~~~  202 (265)
                      |+..+.++..
T Consensus        97 aI~~Lqra~s  106 (284)
T KOG4642|consen   97 AIKVLQRAYS  106 (284)
T ss_pred             HHHHHHHHHH
Confidence            6666655543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.72  E-value=3.3e-08  Score=51.66  Aligned_cols=42  Identities=33%  Similarity=0.612  Sum_probs=27.1

Q ss_pred             hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHH
Q 024618          209 RAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI  250 (265)
Q Consensus       209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~  250 (265)
                      .++..+|.+|...|++++|++.|+++++.+|+++.+|..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            455666666666666666666666666666666666666553

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=3.3e-07  Score=71.11  Aligned_cols=215  Identities=13%  Similarity=0.054  Sum_probs=151.7

Q ss_pred             hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-----HHHHhhhhhhhhhhhhHHHHHHHHHHHHh------cCCCC-
Q 024618           41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-----LEVLLSLGVSHTNELEQAAALKYLYGWLR------HHPKY-  108 (265)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~------~~~~~-  108 (265)
                      ....+..|.+++...++..|++.....+..-...     ..+....-..+....+-++|+.++.-.-+      ..+.. 
T Consensus       100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn  179 (696)
T KOG2471|consen  100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGN  179 (696)
T ss_pred             hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence            3467788888888888988888877666543221     11223333445555666666665432211      11110 


Q ss_pred             -C-----------------CCc-----------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 024618          109 -G-----------------TIA-----------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA  159 (265)
Q Consensus       109 -~-----------------~~~-----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  159 (265)
                       .                 ...           ...+....+...+..-.+.++....+.+......+..++..|++.+|
T Consensus       180 ~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA  259 (696)
T KOG2471|consen  180 HIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKA  259 (696)
T ss_pred             ccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHH
Confidence             0                 000           23344555566666666666667778888999999999999999999


Q ss_pred             HHHHHHHH-hhCCC--------CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc---------CC---------cchhhHH
Q 024618          160 IESFQTAL-KLKPQ--------DYSLWNKLGATQANSVQSADAILAYQRALDL---------KP---------NYVRAWA  212 (265)
Q Consensus       160 ~~~~~~~~-~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~---------~~~~~~~  212 (265)
                      .+.+...- ...|.        ..-.|.++|.+++..|.|.-+..+|.++++.         .|         ...++.+
T Consensus       260 ~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilY  339 (696)
T KOG2471|consen  260 MKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILY  339 (696)
T ss_pred             HHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHH
Confidence            99886542 22222        2345789999999999999999999999951         11         2346889


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 024618          213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYA  255 (265)
Q Consensus       213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  255 (265)
                      +.|..|...|++-.|.++|.++......+|..|..++.+....
T Consensus       340 NcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  340 NCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             hhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998754

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.70  E-value=6e-08  Score=50.67  Aligned_cols=42  Identities=21%  Similarity=0.251  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhh
Q 024618           42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGV   83 (265)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~   83 (265)
                      .++..+|.+|...|++++|+..|+++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456667777777777777777777777777777777666654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.69  E-value=1.1e-06  Score=72.59  Aligned_cols=204  Identities=17%  Similarity=0.173  Sum_probs=143.0

Q ss_pred             HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHH------------HHHHhcCCChHHHHhhhhhhhh
Q 024618           19 RKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAM------------MRAHEAEPTNLEVLLSLGVSHT   86 (265)
Q Consensus        19 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~------------~~~~~~~~~~~~~~~~la~~~~   86 (265)
                      ..|+.+.|.+..+-+     .+..+|-+++..+.+..+.+-|.-++            +++.+ +|+  +.-...|.+..
T Consensus       740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAi  811 (1416)
T KOG3617|consen  740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAI  811 (1416)
T ss_pred             EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHH
Confidence            467888887766544     24567888888888877777665544            33322 232  33344566677


Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618           87 NELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA  166 (265)
Q Consensus        87 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  166 (265)
                      .+|..++|+..|.+.-..+     .+-..|...|.+++|.+..+.--++.  -...+++.+..+...++.+.|+++|+++
T Consensus       812 eLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  812 ELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKA  884 (1416)
T ss_pred             HHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence            8899999999998876542     23456777888888887765433222  2357888999999999999999999875


Q ss_pred             ----------HhhCC----------CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc---------------------CC
Q 024618          167 ----------LKLKP----------QDYSLWNKLGATQANSVQSADAILAYQRALDL---------------------KP  205 (265)
Q Consensus       167 ----------~~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------~~  205 (265)
                                +..+|          .++..|...|..+...|+.+.|+.+|..+-..                     ..
T Consensus       885 ~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~es  964 (1416)
T KOG3617|consen  885 GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEES  964 (1416)
T ss_pred             CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhc
Confidence                      22333          24567778888889999999999999887432                     12


Q ss_pred             cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          206 NYVRAWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      .+..+.+.+|..|...|++.+|+.+|.++-..
T Consensus       965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  965 GDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            34456778888888888888888888776543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=9.2e-06  Score=57.73  Aligned_cols=208  Identities=12%  Similarity=0.078  Sum_probs=113.0

Q ss_pred             hHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHHHhhhhhhhhhhhhHH
Q 024618           23 LSEAVLALEAEVLK-NPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEVLLSLGVSHTNELEQA   92 (265)
Q Consensus        23 ~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~   92 (265)
                      ..++.+...+.... .|+.   ...+..-+.++...+++++|..++.++.+-..++      ..++-..+.+......+.
T Consensus         9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kls   88 (308)
T KOG1585|consen    9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLS   88 (308)
T ss_pred             HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH
Confidence            34455554444432 2322   3356667788888999999999999998755443      234555666667778888


Q ss_pred             HHHHHHHHHHhcCCCCCCCc--------hhhhhhhhchHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHH
Q 024618           93 AALKYLYGWLRHHPKYGTIA--------PPELSDSLYYADVARLFVEAARMSPED------ADVHIVLGVLYNLSRQYDK  158 (265)
Q Consensus        93 ~A~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~  158 (265)
                      ++..+++++....-++...-        +.-.....++++|+.+|++++.+...+      .+.+...+.++.+..++++
T Consensus        89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E  168 (308)
T KOG1585|consen   89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE  168 (308)
T ss_pred             HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence            88888888877644333222        222334445566666666655543221      1334444555666666666


Q ss_pred             HHHHHHHHHhh------CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc----CCcchhhHHHHHHHHHhcCCcHHHH
Q 024618          159 AIESFQTALKL------KPQDYSLWNKLGATQANSVQSADAILAYQRALDL----KPNYVRAWANMGISYANQGMYEESV  228 (265)
Q Consensus       159 A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~  228 (265)
                      |-..+.+-...      .++....+.....++....+|..|..+++...++    .|++..+..+|-..| ..|+.++..
T Consensus       169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~  247 (308)
T KOG1585|consen  169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK  247 (308)
T ss_pred             HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence            65555543221      2222233444444455555666666666655443    223334444443332 344555444


Q ss_pred             HHH
Q 024618          229 RYY  231 (265)
Q Consensus       229 ~~~  231 (265)
                      +.+
T Consensus       248 kvl  250 (308)
T KOG1585|consen  248 KVL  250 (308)
T ss_pred             HHH
Confidence            443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.68  E-value=1.3e-05  Score=62.83  Aligned_cols=189  Identities=16%  Similarity=0.081  Sum_probs=125.2

Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHH
Q 024618           46 LLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADV  125 (265)
Q Consensus        46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  125 (265)
                      .+..-..+..+...-++...+|++++|+.++++..|+.-.  .....+|..+++++++........        ....+.
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~--------s~~~~~  242 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGK--------SQFLQH  242 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhch--------hhhhhc
Confidence            3444456778889999999999999999999998887532  234567777777777653321110        000000


Q ss_pred             HHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618          126 ARLFVEAARMSPED--ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ--DYSLWNKLGATQANSVQSADAILAYQRAL  201 (265)
Q Consensus       126 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  201 (265)
                      ...+-......+.+  ..+...+|.+..+.|+.++|++.++..++..|.  +..++.++..++...+.|.++...+.+--
T Consensus       243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            00010111111111  355678899999999999999999999988775  46789999999999999999999888854


Q ss_pred             hc-CCcchhhHHHHHHHHHh-cCC---------------cHHHHHHHHHHHhcCCCCchh
Q 024618          202 DL-KPNYVRAWANMGISYAN-QGM---------------YEESVRYYVRALAMNPKADNA  244 (265)
Q Consensus       202 ~~-~~~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~a~~~~~~~~~~  244 (265)
                      +. -|+.+...+..+.+-.+ .++               -..|++.+.+|++.+|.-+..
T Consensus       323 Di~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y  382 (539)
T PF04184_consen  323 DISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY  382 (539)
T ss_pred             cccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence            33 24555555544443322 111               135778999999999976543

The molecular function of this protein is uncertain.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=5.9e-06  Score=61.51  Aligned_cols=163  Identities=10%  Similarity=0.011  Sum_probs=131.6

Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhc-CCCCCCCc------hhhhhh
Q 024618           46 LLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRH-HPKYGTIA------PPELSD  118 (265)
Q Consensus        46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~------~~~~~~  118 (265)
                      .-+.+.+..|++.+|....++.++..|.+.-++..--.+++.+|+...-...+++++.. +|+.|-..      +-.+..
T Consensus       108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E  187 (491)
T KOG2610|consen  108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE  187 (491)
T ss_pred             hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence            34556778899999999999999999999888777778888899999999999998876 55554322      667788


Q ss_pred             hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCcHHHH
Q 024618          119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD----YSLWNKLGATQANSVQSADAI  194 (265)
Q Consensus       119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~  194 (265)
                      .|-+++|.+..+++++++|.+.-+...++.++...|++.++.+...+.-..-...    ..-|...+.++...+.|+.|+
T Consensus       188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al  267 (491)
T KOG2610|consen  188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL  267 (491)
T ss_pred             hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence            9999999999999999999999999999999999999999999988764432221    123556678888889999999


Q ss_pred             HHHHHHHh--cCCcch
Q 024618          195 LAYQRALD--LKPNYV  208 (265)
Q Consensus       195 ~~~~~~~~--~~~~~~  208 (265)
                      +.|.+-+-  +..++.
T Consensus       268 eIyD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  268 EIYDREIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHHHHHhhccch
Confidence            99987653  334444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.63  E-value=4e-06  Score=63.11  Aligned_cols=121  Identities=17%  Similarity=0.205  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618          122 YADVARLFVEAARMSPEDADVHIVLGVLYNL-SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA  200 (265)
Q Consensus       122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  200 (265)
                      .+.|..+|.++.+..+....+|...|.+... .++.+.|..+|+.+++..|.+...|......+...|+.+.|...|+++
T Consensus        17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~   96 (280)
T PF05843_consen   17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERA   96 (280)
T ss_dssp             HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4555555666654445556778888888666 566666888888888888888888888888888888888888888888


Q ss_pred             HhcCCcch---hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618          201 LDLKPNYV---RAWANMGISYANQGMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       201 ~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  242 (265)
                      +..-|...   .+|......-.+.|+.+...+..+++.+..|++.
T Consensus        97 i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen   97 ISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             CCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             HHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence            87766544   5777777778888888888888888888877744

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=1.3e-05  Score=56.97  Aligned_cols=186  Identities=11%  Similarity=0.081  Sum_probs=102.4

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCCh------HHHHHHHHHHhhcCcHHHHHHHHHHHHhcC-----CChHHHHh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENS------EGWRLLGIAHAENDDDQQAIAAMMRAHEAE-----PTNLEVLL   79 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~   79 (265)
                      .+-+..+....+|++|...+.++++-..++.      .++-..+........+.++..+++++....     |+....-.
T Consensus        35 ekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmal  114 (308)
T KOG1585|consen   35 EKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMAL  114 (308)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHH
Confidence            3445566667777777777777765433321      233444555566667777777777776652     33322222


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhchHHHHHHHHHHHhc------CCCCHHHHH
Q 024618           80 SLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---------PPELSDSLYYADVARLFVEAARM------SPEDADVHI  144 (265)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~  144 (265)
                      ..+--.....++++|+..|++++.+........         +.++.....+.+|-..+.+-...      .++....+.
T Consensus       115 eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~v  194 (308)
T KOG1585|consen  115 EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYV  194 (308)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHH
Confidence            333333445567777777777776554433222         56666666777766665553322      222233444


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhhcCcHHHHHHH
Q 024618          145 VLGVLYNLSRQYDKAIESFQTALKL----KPQDYSLWNKLGATQANSVQSADAILAY  197 (265)
Q Consensus       145 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~  197 (265)
                      ....+++...+|..|..+++...++    .|++..+..+|-..| ..|+.++....+
T Consensus       195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence            4455556666777777777776554    233344444443333 445555544443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.58  E-value=1.3e-07  Score=73.17  Aligned_cols=105  Identities=14%  Similarity=0.264  Sum_probs=64.6

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHH
Q 024618          147 GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE  226 (265)
Q Consensus       147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  226 (265)
                      +...+..+.++.|+..|.++++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|.+....+++.+
T Consensus        11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~   90 (476)
T KOG0376|consen   11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK   90 (476)
T ss_pred             HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence            34444555666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHhcCCCCchhHHHHHHH
Q 024618          227 SVRYYVRALAMNPKADNAWQYLRIS  251 (265)
Q Consensus       227 A~~~~~~a~~~~~~~~~~~~~l~~~  251 (265)
                      |...|++.....|+++.+...+..|
T Consensus        91 A~~~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   91 ALLDLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             HHHHHHHhhhcCcCcHHHHHHHHHH
Confidence            6666666666666666555554444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.56  E-value=5.6e-08  Score=47.38  Aligned_cols=32  Identities=25%  Similarity=0.409  Sum_probs=15.9

Q ss_pred             HHHHHhcCCCCchhHHHHHHHHHHhCCccccc
Q 024618          231 YVRALAMNPKADNAWQYLRISLRYAGRYPNRG  262 (265)
Q Consensus       231 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  262 (265)
                      |+++++++|+++.+|.++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            34445555555555555555555555554443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=3e-06  Score=62.77  Aligned_cols=96  Identities=17%  Similarity=0.108  Sum_probs=85.3

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENS----EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH   85 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   85 (265)
                      +-..|+.+++..+|..|+..|.+.++..-.++    ..|.+.+-+.+..|+|..|+.-..+++.++|.+..+++.-|.|+
T Consensus        84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~  163 (390)
T KOG0551|consen   84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL  163 (390)
T ss_pred             HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence            44679999999999999999999998765544    46778999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHhcC
Q 024618           86 TNELEQAAALKYLYGWLRHH  105 (265)
Q Consensus        86 ~~~~~~~~A~~~~~~~~~~~  105 (265)
                      +.+..+.+|...++..+.++
T Consensus       164 ~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  164 LELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             HHHHHHHHHHHHHhhhhhhh
Confidence            99999999999999887764

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.55  E-value=6.1e-05  Score=59.27  Aligned_cols=221  Identities=14%  Similarity=0.103  Sum_probs=129.4

Q ss_pred             hHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHH
Q 024618           14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAA   93 (265)
Q Consensus        14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~   93 (265)
                      .....+..+.+.-++.-+++++.+|+.++++..++.-  ......+|..+++++++.......    ........|..-+
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg----~s~~~~~~g~~~e  248 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLG----KSQFLQHHGHFWE  248 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhc----hhhhhhcccchhh
Confidence            3445678899999999999999999999999888763  233467888888888775432110    0000000111000


Q ss_pred             HHHHHHHHHhcCCCCCCC-----chhhhhhhhchHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618           94 ALKYLYGWLRHHPKYGTI-----APPELSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTA  166 (265)
Q Consensus        94 A~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~  166 (265)
                             .....+..+..     ++.+..+.|+.++|++.++..++..|.  +..+..++..+++..+.+.++...+.+-
T Consensus       249 -------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  249 -------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             -------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence                   00000011111     155566667777777777777776654  4568888899999999999998888875


Q ss_pred             Hhh-CCCCHHHHHHHHHHHHh-hcC---------------cHHHHHHHHHHHhcCCcchhhHHHHH------HHHHhcCC
Q 024618          167 LKL-KPQDYSLWNKLGATQAN-SVQ---------------SADAILAYQRALDLKPNYVRAWANMG------ISYANQGM  223 (265)
Q Consensus       167 ~~~-~~~~~~~~~~l~~~~~~-~~~---------------~~~A~~~~~~~~~~~~~~~~~~~~l~------~~~~~~g~  223 (265)
                      -++ -|+++...+..+.+-.+ .++               -..|++.+.+|++.+|.-+..+..+-      .-..+.|+
T Consensus       322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD  401 (539)
T PF04184_consen  322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD  401 (539)
T ss_pred             ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc
Confidence            433 35555555554443322 111               12467888999999988765443321      12334443


Q ss_pred             cHHHHHHHHHHHhcCCCCchhHHHH
Q 024618          224 YEESVRYYVRALAMNPKADNAWQYL  248 (265)
Q Consensus       224 ~~~A~~~~~~a~~~~~~~~~~~~~l  248 (265)
                       .||+.+---.+..=..-+.++..|
T Consensus       402 -SEAiaYAf~hL~hWk~veGAL~lL  425 (539)
T PF04184_consen  402 -SEAIAYAFFHLQHWKRVEGALNLL  425 (539)
T ss_pred             -HHHHHHHHHHHHHHhcCHhHHHHH
Confidence             666666555444333333343333

The molecular function of this protein is uncertain.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.54  E-value=1.1e-07  Score=73.48  Aligned_cols=101  Identities=18%  Similarity=0.152  Sum_probs=95.6

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ   91 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   91 (265)
                      ..+...+..+.|+.|+..|.++++++|++...+-..+.++.+.+++..|+.-+.++++.+|....+++..|.+....+.+
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            56888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCc
Q 024618           92 AAALKYLYGWLRHHPKYGTIA  112 (265)
Q Consensus        92 ~~A~~~~~~~~~~~~~~~~~~  112 (265)
                      .+|+..|++.....|+.+.+.
T Consensus        89 ~~A~~~l~~~~~l~Pnd~~~~  109 (476)
T KOG0376|consen   89 KKALLDLEKVKKLAPNDPDAT  109 (476)
T ss_pred             HHHHHHHHHhhhcCcCcHHHH
Confidence            999999999999999987654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=0.0001  Score=52.25  Aligned_cols=161  Identities=10%  Similarity=-0.009  Sum_probs=109.8

Q ss_pred             hHHHHHcCChHHHHHHHHHHHHhC----CC--ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH------HHHhhh
Q 024618           14 GQELFRKGLLSEAVLALEAEVLKN----PE--NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL------EVLLSL   81 (265)
Q Consensus        14 ~~~~~~~~~~~~A~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l   81 (265)
                      |..+....+++.|=..|-++-+..    ..  ....+...+.+ ++.++.++|+.++++++++..+-.      .-+..+
T Consensus        41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~i  119 (288)
T KOG1586|consen   41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEI  119 (288)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhH
Confidence            344444455555555555543322    11  12233344444 445589999999999998865543      345578


Q ss_pred             hhhhhhh-hhHHHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhchHHHHHHHHHHHhcCCCCHH-------HHH
Q 024618           82 GVSHTNE-LEQAAALKYLYGWLRHHPKYGTIA---------PPELSDSLYYADVARLFVEAARMSPEDAD-------VHI  144 (265)
Q Consensus        82 a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~  144 (265)
                      |.+|... .++++|+.+|+++-+.........         +..-...+++.+|+..|+++....-++.-       .++
T Consensus       120 aEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyfl  199 (288)
T KOG1586|consen  120 AEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFL  199 (288)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHH
Confidence            8888765 899999999999987655433222         66667889999999999999887665543       345


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024618          145 VLGVLYNLSRQYDKAIESFQTALKLKPQDYS  175 (265)
Q Consensus       145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  175 (265)
                      .-|.+++-..+.-.+...+++-.+.+|....
T Consensus       200 kAgLChl~~~D~v~a~~ALeky~~~dP~F~d  230 (288)
T KOG1586|consen  200 KAGLCHLCKADEVNAQRALEKYQELDPAFTD  230 (288)
T ss_pred             HHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence            5577788878888899999999999997643

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.52  E-value=9.1e-08  Score=46.61  Aligned_cols=32  Identities=44%  Similarity=0.828  Sum_probs=16.4

Q ss_pred             HHHHHhcCCcchhhHHHHHHHHHhcCCcHHHH
Q 024618          197 YQRALDLKPNYVRAWANMGISYANQGMYEESV  228 (265)
Q Consensus       197 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  228 (265)
                      |+++++++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            44455555555555555555555555555443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=1.7e-06  Score=61.35  Aligned_cols=101  Identities=18%  Similarity=0.219  Sum_probs=85.1

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHH--------hCCCChH----------HHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVL--------KNPENSE----------GWRLLGIAHAENDDDQQAIAAMMRAHE   69 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~   69 (265)
                      +.+-..|+.++..|+|.+|...|..++.        ..|.+++          .+.+.+.|++..|+|-++++....++.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            3455789999999999999999988864        3355443          567789999999999999999999999


Q ss_pred             cCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 024618           70 AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKY  108 (265)
Q Consensus        70 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  108 (265)
                      .+|.+..+++..|.+....=+..+|..-|.++++++|..
T Consensus       259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            999999999999999888888888888888888877754

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=2.5e-06  Score=60.51  Aligned_cols=104  Identities=15%  Similarity=0.120  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCC----------HHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKL--------KPQD----------YSLWNKLGATQANSVQSADAILAYQRAL  201 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~  201 (265)
                      ..++..-|.-++..|++.+|...|+.++..        .|..          ...+.+.+.|+...|+|-++++....++
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            356777788889999999999999888643        3444          3567888999999999999999999999


Q ss_pred             hcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch
Q 024618          202 DLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN  243 (265)
Q Consensus       202 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  243 (265)
                      ...|.+..+++..|.++...=+..+|...|.++++++|.-..
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            999999999999999999988999999999999999987543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.49  E-value=6.4e-06  Score=61.99  Aligned_cols=134  Identities=15%  Similarity=0.174  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh-hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhc
Q 024618           43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN-ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY  121 (265)
Q Consensus        43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (265)
                      +|..+.....+.+..+.|..+|.++.+..+....+|...|.+-+. .++.+.|.                          
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~--------------------------   56 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRAR--------------------------   56 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHH--------------------------
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHH--------------------------
Confidence            566667777777778888888888876656667777777776554 34433355                          


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCcHHHHHHHH
Q 024618          122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY---SLWNKLGATQANSVQSADAILAYQ  198 (265)
Q Consensus       122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~  198 (265)
                           .+|+.+++..|.+...|......+...|+.+.|..+|++++..-|...   .+|......-...|+.+......+
T Consensus        57 -----~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~  131 (280)
T PF05843_consen   57 -----KIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEK  131 (280)
T ss_dssp             -----HHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred             -----HHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                 555555555666777777777777788888888888888877655443   567777777777787777777777


Q ss_pred             HHHhcCCcc
Q 024618          199 RALDLKPNY  207 (265)
Q Consensus       199 ~~~~~~~~~  207 (265)
                      ++.+..|.+
T Consensus       132 R~~~~~~~~  140 (280)
T PF05843_consen  132 RAEELFPED  140 (280)
T ss_dssp             HHHHHTTTS
T ss_pred             HHHHHhhhh
Confidence            777766653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.45  E-value=1.9e-05  Score=63.80  Aligned_cols=150  Identities=14%  Similarity=0.061  Sum_probs=109.8

Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCCCCch-------------hhhh--hhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024618           87 NELEQAAALKYLYGWLRHHPKYGTIAP-------------PELS--DSLYYADVARLFVEAARMSPEDADVHIVLGVLYN  151 (265)
Q Consensus        87 ~~~~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  151 (265)
                      -.|+-+.+++.+.++.+ .++.....+             -+-.  .....+.|.+.+....+..|+..-..+..|+++.
T Consensus       200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~  278 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER  278 (468)
T ss_pred             cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45788888888888766 222211110             0001  3455678889999999999998888899999999


Q ss_pred             HccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHhcCCc--
Q 024618          152 LSRQYDKAIESFQTALKLKPQD----YSLWNKLGATQANSVQSADAILAYQRALDLKPNY-VRAWANMGISYANQGMY--  224 (265)
Q Consensus       152 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~--  224 (265)
                      ..|+.++|++.+++++.....-    .-.++.+|.++..+.+|++|..++.+..+.+.-. ....+..|.|+...|+.  
T Consensus       279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~  358 (468)
T PF10300_consen  279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEE  358 (468)
T ss_pred             HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchh
Confidence            9999999999999887532222    2457788889999999999999999988865543 33445678888888988  


Q ss_pred             -----HHHHHHHHHHHhc
Q 024618          225 -----EESVRYYVRALAM  237 (265)
Q Consensus       225 -----~~A~~~~~~a~~~  237 (265)
                           ++|.+.+.++-..
T Consensus       359 ~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  359 AKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             hhhhHHHHHHHHHHHHHH
Confidence                 8888888877654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.45  E-value=3.6e-07  Score=44.75  Aligned_cols=32  Identities=44%  Similarity=0.843  Sum_probs=19.8

Q ss_pred             hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          209 RAWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      .+|+.+|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.43  E-value=5.9e-07  Score=43.98  Aligned_cols=33  Identities=36%  Similarity=0.847  Sum_probs=21.5

Q ss_pred             hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC
Q 024618          209 RAWANMGISYANQGMYEESVRYYVRALAMNPKA  241 (265)
Q Consensus       209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  241 (265)
                      .+++.+|.++..+|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456666777777777777777777777766653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=98.39  E-value=0.00026  Score=55.48  Aligned_cols=237  Identities=13%  Similarity=0.111  Sum_probs=145.1

Q ss_pred             hHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC--------hHHHHhhhhhh
Q 024618           14 GQELFRKGLLSEAVLALEAEVLKNP-ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT--------NLEVLLSLGVS   84 (265)
Q Consensus        14 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~   84 (265)
                      +.+..+.|+++.    +.+.+...+ +.++..+..+......++++++..+++++...--.        .....+..-..
T Consensus         5 ~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~   80 (352)
T PF02259_consen    5 AEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK   80 (352)
T ss_pred             HHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            567788999998    333333333 23466666777777999999999998888764211        11111111111


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCCCC----CCc-hhhhh---hhhchHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHc
Q 024618           85 HTNELEQAAALKYLYGWLRHHPKYG----TIA-PPELS---DSLYYADVARLFVEAAR---MSPEDADVHIVLGVLYNLS  153 (265)
Q Consensus        85 ~~~~~~~~~A~~~~~~~~~~~~~~~----~~~-~~~~~---~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~  153 (265)
                      +....+.+++.......... +...    ..| ...-.   ....++.-+..-.-++.   ........+...+.+....
T Consensus        81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~  159 (352)
T PF02259_consen   81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKA  159 (352)
T ss_pred             HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHC
Confidence            12233344444333111000 0000    000 00000   00011111111111111   1334567888999999999


Q ss_pred             cCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc---CC---------------------
Q 024618          154 RQYDKAIESFQTALKLKP----QDYSLWNKLGATQANSVQSADAILAYQRALDL---KP---------------------  205 (265)
Q Consensus       154 ~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~---------------------  205 (265)
                      |.++.|...+.++...++    ..+.+....+.+....|+..+|+..++..+..   .+                     
T Consensus       160 g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (352)
T PF02259_consen  160 GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVIS  239 (352)
T ss_pred             CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccccccc
Confidence            999999999999987642    25678888899999999999999999888771   00                     


Q ss_pred             ----c------chhhHHHHHHHHHhc------CCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 024618          206 ----N------YVRAWANMGISYANQ------GMYEESVRYYVRALAMNPKADNAWQYLRISLRYA  255 (265)
Q Consensus       206 ----~------~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  255 (265)
                          .      ...++..+|......      +..++++..|+++++.+|+...+|..+|..+...
T Consensus       240 ~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  240 STNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence                0      124556677766667      7889999999999999999999999999887765

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=6.1e-05  Score=64.09  Aligned_cols=89  Identities=15%  Similarity=0.122  Sum_probs=68.5

Q ss_pred             hhhHHHHHcCChHHHHHHHHHH------HH----------------hCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618           12 KEGQELFRKGLLSEAVLALEAE------VL----------------KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE   69 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~------~~----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~   69 (265)
                      ..|.+....+-|++|..+|++-      ++                ..-+.+.+|..+|.+..+.|...+|++.|-++  
T Consensus      1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred             hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence            3566667777777777776542      11                01245779999999999999999999999876  


Q ss_pred             cCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcC
Q 024618           70 AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHH  105 (265)
Q Consensus        70 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  105 (265)
                         ++|..+.....+..+.|.|++-++++..+.+..
T Consensus      1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred             ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence               677888888888899999999999888776643

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.38  E-value=1.2e-06  Score=42.89  Aligned_cols=33  Identities=33%  Similarity=0.372  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh
Q 024618           42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN   74 (265)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~   74 (265)
                      .+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            467777777777777777777777777777753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.35  E-value=0.00017  Score=55.63  Aligned_cols=174  Identities=15%  Similarity=0.061  Sum_probs=90.9

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHh----CCCChHHHHHHHHHHhh---cCcHHHHHHHHHH-HHhcCCChHHHHhhhhhh
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLK----NPENSEGWRLLGIAHAE---NDDDQQAIAAMMR-AHEAEPTNLEVLLSLGVS   84 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~   84 (265)
                      .-..|....+|+.-+.+.+.+-..    .++.+.+.+..|.++.+   .|+.++|+..+.. .....+.+++.+..+|.+
T Consensus       147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI  226 (374)
T PF13281_consen  147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI  226 (374)
T ss_pred             HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            334455556666666655554333    23344555556666666   6666666666666 333445556666666666


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024618           85 HTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQ  164 (265)
Q Consensus        85 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  164 (265)
                      |-..=  .          +..          .......++|+..|.++.+.+|+. ..-.+++.++...|...+...-++
T Consensus       227 yKD~~--~----------~s~----------~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~  283 (374)
T PF13281_consen  227 YKDLF--L----------ESN----------FTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELR  283 (374)
T ss_pred             HHHHH--H----------HcC----------ccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHH
Confidence            54220  0          000          011122566667777777666542 233344444444443222221111


Q ss_pred             HHH--------hh----CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh
Q 024618          165 TAL--------KL----KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR  209 (265)
Q Consensus       165 ~~~--------~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  209 (265)
                      +..        +.    .-.+......++.+..-.|++++|++.+++++...|....
T Consensus       284 ~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~  340 (374)
T PF13281_consen  284 KIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE  340 (374)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence            111        11    1223444556667777788888888888888888766543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.34  E-value=2e-05  Score=63.62  Aligned_cols=146  Identities=16%  Similarity=0.083  Sum_probs=108.9

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCC-HHH------HHHHHHHHH----HccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPED-ADV------HIVLGVLYN----LSRQYDKAIESFQTALKLKPQDYSLWNKLG  181 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~------~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  181 (265)
                      ..+..-.|+-+.+++.+.++.+...-. +.+      ++.....+.    .....+.|.+.+....+..|+.+-..+..|
T Consensus       195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~g  274 (468)
T PF10300_consen  195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEG  274 (468)
T ss_pred             HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            344445678889999999887732211 111      111111111    245678899999999999999999999999


Q ss_pred             HHHHhhcCcHHHHHHHHHHHhcCCcc----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHhC
Q 024618          182 ATQANSVQSADAILAYQRALDLKPNY----VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA-WQYLRISLRYAG  256 (265)
Q Consensus       182 ~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~l~~~~~~~~  256 (265)
                      .++...|+.++|++.|++++......    .-.++.+|.++..+++|++|..++.+..+.+.-.... .+..|.++...|
T Consensus       275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~  354 (468)
T PF10300_consen  275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLG  354 (468)
T ss_pred             HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc
Confidence            99999999999999999988544332    2456789999999999999999999999876554333 444788888888


Q ss_pred             Cc
Q 024618          257 RY  258 (265)
Q Consensus       257 ~~  258 (265)
                      +.
T Consensus       355 ~~  356 (468)
T PF10300_consen  355 RE  356 (468)
T ss_pred             cc
Confidence            88

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.33  E-value=1.6e-06  Score=42.39  Aligned_cols=33  Identities=33%  Similarity=0.494  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh
Q 024618           42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN   74 (265)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~   74 (265)
                      .+++.+|.+++..|++++|+++++++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456667777777777777777777777776653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.33  E-value=0.00076  Score=52.69  Aligned_cols=49  Identities=20%  Similarity=0.288  Sum_probs=41.5

Q ss_pred             HHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          215 GISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       215 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      |..++.+|+|.++.-+-.-..++.| ++.++..+|.++....+|++|-++
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~  517 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEY  517 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3345678999999999888899999 699999999999999999988654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=0.00037  Score=51.36  Aligned_cols=126  Identities=17%  Similarity=0.105  Sum_probs=60.2

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc----hhhhhhh
Q 024618           44 WRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA----PPELSDS  119 (265)
Q Consensus        44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~  119 (265)
                      -+..+.-....|++.+|...|..++...|++.++...++.++...|+.+.|...+...-....+.....    ...+...
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa  216 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA  216 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            334444455556666666666666666666656666666666666665555544433211111100000    0000000


Q ss_pred             hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024618          120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK  170 (265)
Q Consensus       120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  170 (265)
                      ....+ ...+++.+..+|++..+-+.++..+...|+.+.|.+.+-..++.+
T Consensus       217 a~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d  266 (304)
T COG3118         217 AATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD  266 (304)
T ss_pred             hcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            00000 022334444566666666666666666666666666666665543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=0.00023  Score=51.40  Aligned_cols=230  Identities=16%  Similarity=0.097  Sum_probs=159.8

Q ss_pred             HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHH-HHHH
Q 024618           19 RKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEND-DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQA-AALK   96 (265)
Q Consensus        19 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~   96 (265)
                      +...-..|+.+-..++..+|.+-.+|...-.++..++ +..+-++++..+++-+|.+-.+|...-.+....|++. .-++
T Consensus        55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe  134 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE  134 (318)
T ss_pred             ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence            3456688999999999999999888888777766554 5777889999999999999999988888888888877 7888


Q ss_pred             HHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cc-----CHHHHHHHHHHHH
Q 024618           97 YLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL-SR-----QYDKAIESFQTAL  167 (265)
Q Consensus        97 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-----~~~~A~~~~~~~~  167 (265)
                      ....++..+.++..++   -.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... .|     ..+.-+.+..+.+
T Consensus       135 f~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I  214 (318)
T KOG0530|consen  135 FTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKI  214 (318)
T ss_pred             HHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHH
Confidence            8899999888888777   5666777779999999999988877666666544222211 11     2344556777788


Q ss_pred             hhCCCCHHHHHHHHHHHHh-hc--CcHHHHHHHHHHH-hcCCcchhhHHHHHHHHH------hcCCcH---HHHHHHHHH
Q 024618          168 KLKPQDYSLWNKLGATQAN-SV--QSADAILAYQRAL-DLKPNYVRAWANMGISYA------NQGMYE---ESVRYYVRA  234 (265)
Q Consensus       168 ~~~~~~~~~~~~l~~~~~~-~~--~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~------~~g~~~---~A~~~~~~a  234 (265)
                      ...|++..+|..+.-++.. .|  .+.+........+ ......|..+..+..+|.      +.+.-+   +|.+.++..
T Consensus       215 ~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~L  294 (318)
T KOG0530|consen  215 LLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDL  294 (318)
T ss_pred             HhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence            8899999999998888875 44  2344455555544 333344555555555552      222333   455556554


Q ss_pred             H-hcCCCCchhHHHH
Q 024618          235 L-AMNPKADNAWQYL  248 (265)
Q Consensus       235 ~-~~~~~~~~~~~~l  248 (265)
                      - +.+|-....|...
T Consensus       295 a~~~DpiR~nyW~~~  309 (318)
T KOG0530|consen  295 AIKVDPIRKNYWRHK  309 (318)
T ss_pred             hhccCcHHHHHHHHH
Confidence            4 5566544444443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.31  E-value=0.00021  Score=49.26  Aligned_cols=116  Identities=13%  Similarity=0.058  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHH
Q 024618          124 DVARLFVEAARMSPEDA---DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAY  197 (265)
Q Consensus       124 ~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~  197 (265)
                      +.....++....+|...   -....++..+...|++++|...++.++....+.   +-+-.+++.+...+|++++|+..+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34445555555555443   345677888999999999999999998653332   345678999999999999999988


Q ss_pred             HHHHhcCCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC
Q 024618          198 QRALDLKPNY-VRAWANMGISYANQGMYEESVRYYVRALAMNPKA  241 (265)
Q Consensus       198 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  241 (265)
                      ...-.  +.. +..-...|+++...|+.++|+..|+++++..++.
T Consensus       150 ~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         150 DTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             hcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            86432  221 2345568999999999999999999999987553

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.26  E-value=6.4e-05  Score=50.82  Aligned_cols=90  Identities=26%  Similarity=0.252  Sum_probs=66.5

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC
Q 024618          147 GVLYNLSRQYDKAIESFQTALKLKPQD----------------------YSLWNKLGATQANSVQSADAILAYQRALDLK  204 (265)
Q Consensus       147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  204 (265)
                      |......++.+.++..+++++.+....                      ..+...++..+...|++++|+..+++++..+
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d   92 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD   92 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence            444455667777777777777653221                      2345567777888999999999999999999


Q ss_pred             CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618          205 PNYVRAWANMGISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       205 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      |.+..++..+..++...|+..+|+..|++...
T Consensus        93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=0.0003  Score=50.84  Aligned_cols=168  Identities=17%  Similarity=0.188  Sum_probs=134.7

Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhh-hhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH-HHHH
Q 024618           87 NELEQAAALKYLYGWLRHHPKYGTIA---PPELS-DSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYD-KAIE  161 (265)
Q Consensus        87 ~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~  161 (265)
                      +......|+.....++.++|.+...+   -.++. ...+..+-++++.+.+..+|.+..+|...-.+....|++. .-++
T Consensus        55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe  134 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE  134 (318)
T ss_pred             ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence            34466789999999999999988877   22332 3345778889999999999999999999888888889888 8888


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh-cC-----CcHHHHHHHHHHH
Q 024618          162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN-QG-----MYEESVRYYVRAL  235 (265)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g-----~~~~A~~~~~~a~  235 (265)
                      ..+.++..+.++..+|...-.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... .|     ..+.-+.+..+.+
T Consensus       135 f~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I  214 (318)
T KOG0530|consen  135 FTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKI  214 (318)
T ss_pred             HHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998887777777654333222 22     2344566788899


Q ss_pred             hcCCCCchhHHHHHHHHHH
Q 024618          236 AMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~~  254 (265)
                      ...|++..+|..|.-++..
T Consensus       215 ~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  215 LLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             HhCCCCccHHHHHHHHHHh
Confidence            9999999999999988875

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.21  E-value=0.00085  Score=51.96  Aligned_cols=169  Identities=15%  Similarity=0.088  Sum_probs=99.8

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHhc----CCChHHHHhhhhhhhhh---hhhHHHHHHHHHHHHhcCCCCCCCchhh
Q 024618           43 GWRLLGIAHAENDDDQQAIAAMMRAHEA----EPTNLEVLLSLGVSHTN---ELEQAAALKYLYGWLRHHPKYGTIAPPE  115 (265)
Q Consensus        43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~  115 (265)
                      ....+-.+|....+|+.-++..+..-..    -++.+.+...+|.++.+   .|+.++|+..+..+              
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~--------------  208 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPV--------------  208 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH--------------
Confidence            4444445555666666655555555444    23334444455555544   44554444444432              


Q ss_pred             hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---------HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024618          116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYN---------LSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN  186 (265)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  186 (265)
                                      .....+.+++.+..+|.+|.         .....++|+..|.++.+.+|+. ..-.+++.++..
T Consensus       209 ----------------l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~  271 (374)
T PF13281_consen  209 ----------------LESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLML  271 (374)
T ss_pred             ----------------HhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHH
Confidence                            23334555667777776653         1334889999999999998654 344556666666


Q ss_pred             hcCcHHHHHHHHHHH--------hc----CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618          187 SVQSADAILAYQRAL--------DL----KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       187 ~~~~~~A~~~~~~~~--------~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  242 (265)
                      .|...+...-.++..        +.    ...+.+..-.++.+..-.|++++|+..+++++.+.|..-
T Consensus       272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            665433322222211        11    122334555678888889999999999999999987654

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.18  E-value=0.00083  Score=55.77  Aligned_cols=223  Identities=20%  Similarity=0.100  Sum_probs=138.9

Q ss_pred             hHHHHHHHHHHHHhCCCChHHHHHHHHHHhhc-----CcHHHHHHHHHHHHhc-----CCChHHHHhhhhhhhhhhh---
Q 024618           23 LSEAVLALEAEVLKNPENSEGWRLLGIAHAEN-----DDDQQAIAAMMRAHEA-----EPTNLEVLLSLGVSHTNEL---   89 (265)
Q Consensus        23 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~---   89 (265)
                      ...|..+++.+.+.  .+..+...+|.++..-     .+.+.|+.++..+.+.     ....+.+.+.+|.+|....   
T Consensus       228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~  305 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE  305 (552)
T ss_pred             hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence            45677777776544  4567777777777654     5788888888888661     1114556777888777632   


Q ss_pred             --hHHHHHHHHHHHHhcCCCCCCCc-hhhhhhhh---chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHH
Q 024618           90 --EQAAALKYLYGWLRHHPKYGTIA-PPELSDSL---YYADVARLFVEAARMSPEDADVHIVLGVLYNL----SRQYDKA  159 (265)
Q Consensus        90 --~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A  159 (265)
                        +...|+.++.++......+.... +.++....   +...|..+|..+...  .+..+.+.++.++..    ..+...|
T Consensus       306 ~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  306 KIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence              67778888888887766555444 44444333   467888888888764  446777777777754    3477888


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhh-cCcHHHHHHHHHHHhc-----------------------------------
Q 024618          160 IESFQTALKLKPQDYSLWNKLGATQANS-VQSADAILAYQRALDL-----------------------------------  203 (265)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~-----------------------------------  203 (265)
                      ..++.++.+..  ++.+...++..+..- +.++.+.-.+....+.                                   
T Consensus       384 ~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~  461 (552)
T KOG1550|consen  384 FAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL  461 (552)
T ss_pred             HHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence            88888888775  334444444433222 3333332222211111                                   


Q ss_pred             -----CCcchhhHHHHHHHHHhc----CCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618          204 -----KPNYVRAWANMGISYANQ----GMYEESVRYYVRALAMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       204 -----~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  254 (265)
                           ...++.+...+|.+|..-    .+++.|...|.++....   ....+++|.++..
T Consensus       462 ~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~  518 (552)
T KOG1550|consen  462 YSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEH  518 (552)
T ss_pred             HHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhc
Confidence                 122344556677776654    34788888888887765   6777777776653

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=0.00018  Score=52.91  Aligned_cols=146  Identities=14%  Similarity=0.116  Sum_probs=105.6

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhhcCcH
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY-SLWNKLGATQANSVQSA  191 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~  191 (265)
                      +.-....|++.+|...+..++...|.+..+...++.++...|+.+.|...+...-....... .........+.......
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            55667788899999999999999999999999999999999999999888766432222211 11111123333333333


Q ss_pred             HHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHhCCcc
Q 024618          192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP--KADNAWQYLRISLRYAGRYP  259 (265)
Q Consensus       192 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~  259 (265)
                      +. ..+++.+..+|++..+-+.++..+...|+.++|.+.+-..++.+-  .+..+...+-.++...|..+
T Consensus       221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D  289 (304)
T COG3118         221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD  289 (304)
T ss_pred             CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence            32 234555677999999999999999999999999999998888754  34566777777777766544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.16  E-value=0.0003  Score=47.58  Aligned_cols=63  Identities=25%  Similarity=0.266  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALD  202 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  202 (265)
                      ..+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|++.|++...
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            456677788889999999999999999999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.14  E-value=1.9e-06  Score=64.06  Aligned_cols=94  Identities=20%  Similarity=0.246  Sum_probs=78.1

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHH
Q 024618          147 GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE  226 (265)
Q Consensus       147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  226 (265)
                      +.-.+..|.+++|++.|..++.++|.....+...+.++.++++...|++-+..+++++|+....+-..|.....+|++++
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            34455678888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhcCCC
Q 024618          227 SVRYYVRALAMNPK  240 (265)
Q Consensus       227 A~~~~~~a~~~~~~  240 (265)
                      |...+..+.+++-+
T Consensus       201 aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  201 AAHDLALACKLDYD  214 (377)
T ss_pred             HHHHHHHHHhcccc
Confidence            88888888877543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.14  E-value=7.3e-05  Score=59.94  Aligned_cols=102  Identities=18%  Similarity=0.145  Sum_probs=84.6

Q ss_pred             HccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHH
Q 024618          152 LSRQYDKAIESFQTALKLKPQDY-SLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRY  230 (265)
Q Consensus       152 ~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  230 (265)
                      ..|+...|+.++..++...|... ....+++.+..+.|-...|-..+.+++.+..+.+-.++.+|..+..+.+.+.|++.
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~  698 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA  698 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence            46778888888888888777543 44678889999889888999999999999888888889999999999999999999


Q ss_pred             HHHHHhcCCCCchhHHHHHHHHH
Q 024618          231 YVRALAMNPKADNAWQYLRISLR  253 (265)
Q Consensus       231 ~~~a~~~~~~~~~~~~~l~~~~~  253 (265)
                      |+++++.+|+++..-..|-.+-+
T Consensus       699 ~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  699 FRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHhcCCCChhhHHHHHHHHH
Confidence            99999999998877665544433

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.13  E-value=0.0026  Score=50.96  Aligned_cols=212  Identities=16%  Similarity=0.103  Sum_probs=145.8

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHhhcCc--------------HHHHHHHHHHHHhcCC-ChHHHHhhhhhhhhhh---h
Q 024618           28 LALEAEVLKNPENSEGWRLLGIAHAENDD--------------DQQAIAAMMRAHEAEP-TNLEVLLSLGVSHTNE---L   89 (265)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~---~   89 (265)
                      -.+++++..-+-.++.|+..+..+...++              -+++.+++++++..-. .+...++.++..-...   +
T Consensus       266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n  345 (656)
T KOG1914|consen  266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN  345 (656)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence            34667777777788888776665555555              6788888888876433 2344445454433222   2


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCch----hhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHccCHHHHHHHHH
Q 024618           90 EQAAALKYLYGWLRHHPKYGTIAP----PELSDSLYYADVARLFVEAARMSPEDADVHIVLGV-LYNLSRQYDKAIESFQ  164 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~  164 (265)
                      ..+..-..+++++.....++...-    ....+..-...|...|.++-+.....-.++..-|. -|...++..-|...|+
T Consensus       346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe  425 (656)
T KOG1914|consen  346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE  425 (656)
T ss_pred             hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence            366677788888877666666552    23333444566667777776543332234443333 2456799999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc--CCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618          165 TALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL--KPNY-VRAWANMGISYANQGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  239 (265)
                      -.++..++++..-......+...++-..|...|++++..  .|+. .+.|..+-..-..-|+....++.-++-....|
T Consensus       426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            999999999999888889999999999999999999987  3332 46777777777788888888877776665555

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=3.9e-05  Score=57.11  Aligned_cols=97  Identities=24%  Similarity=0.277  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQD----YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS  217 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  217 (265)
                      -+..-|.-|+..++|..|+..|.+.++..-.+    ...|.+.+.+....|+|..|+.-+.+++..+|.+..+++.-+.|
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc  162 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC  162 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence            34455666677777777777777777654333    34566677777777777777777777777777777777777777


Q ss_pred             HHhcCCcHHHHHHHHHHHhcC
Q 024618          218 YANQGMYEESVRYYVRALAMN  238 (265)
Q Consensus       218 ~~~~g~~~~A~~~~~~a~~~~  238 (265)
                      ++.+.++.+|..+++..+.++
T Consensus       163 ~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  163 LLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             HHHHHHHHHHHHHHhhhhhhh
Confidence            777777777766666665543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.11  E-value=0.00042  Score=47.88  Aligned_cols=101  Identities=16%  Similarity=0.077  Sum_probs=55.2

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Q 024618           77 VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQY  156 (265)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  156 (265)
                      +-..++..+...+++++|+..++.++....+.                   .+.         ..+-..++.+....|.+
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De-------------------~lk---------~l~~lRLArvq~q~~k~  142 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDE-------------------NLK---------ALAALRLARVQLQQKKA  142 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhH-------------------HHH---------HHHHHHHHHHHHHhhhH
Confidence            34445666666667777776666666543221                   010         23345566666666666


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618          157 DKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN  206 (265)
Q Consensus       157 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  206 (265)
                      ++|+..+...... .-.+......|.++...|+-++|+..|+++++..++
T Consensus       143 D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         143 DAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence            6666666543221 111233455666666666666666666666665533

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.10  E-value=5.9e-06  Score=40.34  Aligned_cols=32  Identities=41%  Similarity=0.808  Sum_probs=21.4

Q ss_pred             hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          209 RAWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      .+|+.+|.++..+|++++|+++|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35666677777777777777777777766663

...

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=98.06  E-value=0.0032  Score=49.38  Aligned_cols=128  Identities=16%  Similarity=0.199  Sum_probs=92.8

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CC-C--------------
Q 024618          113 PPELSDSLYYADVARLFVEAARMSP----EDADVHIVLGVLYNLSRQYDKAIESFQTALKL-KP-Q--------------  172 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-~--------------  172 (265)
                      +.+....|.++.|...+.++....+    ..+.+....+.++...|+..+|+..++..+.. .. .              
T Consensus       153 a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~  232 (352)
T PF02259_consen  153 AKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLL  232 (352)
T ss_pred             HHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccc
Confidence            5566677777777777777776542    24667777788888888888888888777761 00 0              


Q ss_pred             ------------------CHHHHHHHHHHHHhh------cCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCC-----
Q 024618          173 ------------------DYSLWNKLGATQANS------VQSADAILAYQRALDLKPNYVRAWANMGISYANQGM-----  223 (265)
Q Consensus       173 ------------------~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----  223 (265)
                                        ...++..+|......      +..++++..|.++++..|+...+|+..|..+...=.     
T Consensus       233 ~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~  312 (352)
T PF02259_consen  233 ESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPRE  312 (352)
T ss_pred             cccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhc
Confidence                              124566667766666      888999999999999999999999988887765411     


Q ss_pred             ------------cHHHHHHHHHHHhcCCC
Q 024618          224 ------------YEESVRYYVRALAMNPK  240 (265)
Q Consensus       224 ------------~~~A~~~~~~a~~~~~~  240 (265)
                                  ...|+..|-+++...++
T Consensus       313 ~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  313 KEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                        13478888888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.00  E-value=0.0049  Score=49.46  Aligned_cols=67  Identities=16%  Similarity=0.107  Sum_probs=53.4

Q ss_pred             CCCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618            2 NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA   70 (265)
Q Consensus         2 np~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~   70 (265)
                      ||+. ...|+.+.+.+..+ .+++....|++.+...|..+.+|.......+..++|+.....|.+++..
T Consensus        16 nP~d-i~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   16 NPYD-IDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             CCcc-HHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            5532 33466666665555 8999999999999999999999999888889999999999988888753

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=98.00  E-value=0.0011  Score=51.80  Aligned_cols=99  Identities=14%  Similarity=-0.082  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHH-HHHHhhcCcHHHHHHHHHHHhcCC-----cchhhHHHH
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQ-DYSLWNKLG-ATQANSVQSADAILAYQRALDLKP-----NYVRAWANM  214 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l  214 (265)
                      +.+.....+.+.|-+..|.+..+-.+.++|. +|-...... ....+.++++--+..++.......     .-|..-+..
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~  184 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI  184 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence            4555567778888899999999988998888 664443333 344566777766776666544211     134566778


Q ss_pred             HHHHHhcCCc---------------HHHHHHHHHHHhcCCC
Q 024618          215 GISYANQGMY---------------EESVRYYVRALAMNPK  240 (265)
Q Consensus       215 ~~~~~~~g~~---------------~~A~~~~~~a~~~~~~  240 (265)
                      +.+++..++.               ++|...+.+|+...|.
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            8888888888               8899999999887664

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.00  E-value=0.0033  Score=47.48  Aligned_cols=218  Identities=14%  Similarity=0.068  Sum_probs=131.0

Q ss_pred             HHHcCChHHHHHHHHHHHHhC-CCCh-------HHHHHHHHHHhhcC-cHHHHHHHHHHHHhc----CCC---h------
Q 024618           17 LFRKGLLSEAVLALEAEVLKN-PENS-------EGWRLLGIAHAEND-DDQQAIAAMMRAHEA----EPT---N------   74 (265)
Q Consensus        17 ~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~----~~~---~------   74 (265)
                      ....|+++.|..++.++-... ..++       ...+..|......+ +++.|...++++.++    .+.   .      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            357899999999999986654 2233       36677888888899 999999999999887    221   1      


Q ss_pred             -HHHHhhhhhhhhhhhhHH---HHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCC-CCHHHHHHH
Q 024618           75 -LEVLLSLGVSHTNELEQA---AALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSP-EDADVHIVL  146 (265)
Q Consensus        75 -~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l  146 (265)
                       ..++..++.++...+..+   +|....+.+-...|+.+...   ..++...++.+++.+.+.+++...+ .....-..+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l  162 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence             246777888888776554   45555556655666655544   4445557778888889988887654 222222222


Q ss_pred             HHH-HHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHH---HHhhc--CcHHH--HHHHHHHHh----c--CCcch--
Q 024618          147 GVL-YNLSRQYDKAIESFQTALKL--KPQDYSLWNKLGAT---QANSV--QSADA--ILAYQRALD----L--KPNYV--  208 (265)
Q Consensus       147 ~~~-~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~---~~~~~--~~~~A--~~~~~~~~~----~--~~~~~--  208 (265)
                      ..+ .........+...+...+..  .|.... +.....+   +...+  +....  ++.....+.    .  .|-.+  
T Consensus       163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~  241 (278)
T PF08631_consen  163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA  241 (278)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            222 12234456677777776653  222211 3332222   22211  11122  222222222    1  12111  


Q ss_pred             -----hhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618          209 -----RAWANMGISYANQGMYEESVRYYVRAL  235 (265)
Q Consensus       209 -----~~~~~l~~~~~~~g~~~~A~~~~~~a~  235 (265)
                           ..+.+.|...++.++|++|+.+|+-++
T Consensus       242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence                 234567888899999999999998776

It is also involved in sporulation [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.97  E-value=3.2e-06  Score=62.89  Aligned_cols=85  Identities=12%  Similarity=-0.018  Sum_probs=46.5

Q ss_pred             hhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHH
Q 024618           52 AENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARL  128 (265)
Q Consensus        52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~  128 (265)
                      +..|.++.|++.+..++.++|.....+...+.++..+++...|+.-+..++.++|+...-+   +.....+|+|.+|...
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d  204 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD  204 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence            4445555555555555555555555555555555555555555555555555555544333   4555555555555555


Q ss_pred             HHHHHhcC
Q 024618          129 FVEAARMS  136 (265)
Q Consensus       129 ~~~~~~~~  136 (265)
                      +..+.+++
T Consensus       205 l~~a~kld  212 (377)
T KOG1308|consen  205 LALACKLD  212 (377)
T ss_pred             HHHHHhcc
Confidence            55555544

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.97  E-value=0.0015  Score=54.26  Aligned_cols=213  Identities=18%  Similarity=0.146  Sum_probs=127.8

Q ss_pred             CChHHHHHHHHHHHHh-----CCCChHHHHHHHHHHhhcC-----cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh-
Q 024618           21 GLLSEAVLALEAEVLK-----NPENSEGWRLLGIAHAEND-----DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL-   89 (265)
Q Consensus        21 ~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-   89 (265)
                      .+.+.|+.+++.+...     .-..+.+.+.+|.+|....     +...|..++.++-+..  ++.+.+.+|.++.... 
T Consensus       263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~  340 (552)
T KOG1550|consen  263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTK  340 (552)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCc
Confidence            5677777777777651     1124556677777776643     5677777777776653  4556666666666444 


Q ss_pred             --hHHHHHHHHHHHHhcCCCCCCCchhhhhh-----hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-cCHHHHHH
Q 024618           90 --EQAAALKYLYGWLRHHPKYGTIAPPELSD-----SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS-RQYDKAIE  161 (265)
Q Consensus        90 --~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~  161 (265)
                        +...|..+|..+.+..-.........+..     ..+...|..+++++.+..  .+.+...++.++... ++++.+..
T Consensus       341 ~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~  418 (552)
T KOG1550|consen  341 ERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALA  418 (552)
T ss_pred             cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHH
Confidence              55677777777766544433333222222     235667777777777665  233333333332211 33333333


Q ss_pred             HHHHHHhh----------------------------------------CCCCHHHHHHHHHHHHhh----cCcHHHHHHH
Q 024618          162 SFQTALKL----------------------------------------KPQDYSLWNKLGATQANS----VQSADAILAY  197 (265)
Q Consensus       162 ~~~~~~~~----------------------------------------~~~~~~~~~~l~~~~~~~----~~~~~A~~~~  197 (265)
                      .+......                                        ...++.+...+|.+|..-    .+++.|...|
T Consensus       419 ~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y  498 (552)
T KOG1550|consen  419 LYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQY  498 (552)
T ss_pred             HHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHH
Confidence            32222111                                        123445666677766654    4588999999


Q ss_pred             HHHHhcCCcchhhHHHHHHHHHhc---CCcHHHHHHHHHHHhcCCC
Q 024618          198 QRALDLKPNYVRAWANMGISYANQ---GMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~  240 (265)
                      .++....   +...+++|.++..-   .....|..++.++.+.+..
T Consensus       499 ~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~  541 (552)
T KOG1550|consen  499 ARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR  541 (552)
T ss_pred             HHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence            9988776   78899999988752   1268999999998876654

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.91  E-value=0.0052  Score=47.46  Aligned_cols=116  Identities=14%  Similarity=0.161  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh---hcCcHHHHHHHHH
Q 024618          123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN---SVQSADAILAYQR  199 (265)
Q Consensus       123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~  199 (265)
                      +.-+.+++++++.+|++...+..+-....+..+.++....+++++..+|+++..|...-.....   .-.++.....|.+
T Consensus        48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~  127 (321)
T PF08424_consen   48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK  127 (321)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            4455667777777888888777777777777778888888888888888888777665554333   2245566666666


Q ss_pred             HHhcCC------------------cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC
Q 024618          200 ALDLKP------------------NYVRAWANMGISYANQGMYEESVRYYVRALAMN  238 (265)
Q Consensus       200 ~~~~~~------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  238 (265)
                      ++..-.                  ....++..+.....+.|..+.|+..++-.++++
T Consensus       128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            654310                  012345567777778888888888888888864

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.90  E-value=2.7e-05  Score=37.90  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC
Q 024618           42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT   73 (265)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~   73 (265)
                      .+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35666777777777777777777777776663

...

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.89  E-value=0.00086  Score=51.67  Aligned_cols=144  Identities=17%  Similarity=0.126  Sum_probs=106.3

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHhhcCc------------HHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHH
Q 024618           28 LALEAEVLKNPENSEGWRLLGIAHAENDD------------DQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL   95 (265)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~   95 (265)
                      ..+++.++.+|.+.++|..+....-..-.            .+.-+.++++|++.+|++...+..+-.......+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45778889999999999988776543322            456788999999999999998888888888888888889


Q ss_pred             HHHHHHHhcCCCCCCCc-hhhhhhhh-----chHHHHHHHHHHHhcCC----C--------------CHHHHHHHHHHHH
Q 024618           96 KYLYGWLRHHPKYGTIA-PPELSDSL-----YYADVARLFVEAARMSP----E--------------DADVHIVLGVLYN  151 (265)
Q Consensus        96 ~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~a~~~~~~~~~~~~----~--------------~~~~~~~l~~~~~  151 (265)
                      +.+++++..+|.+...| ..+-..++     .+......|.+++..-.    .              ...++..+.....
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~  165 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR  165 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999988887 33322222     35556666665554310    0              1235566677778


Q ss_pred             HccCHHHHHHHHHHHHhhCC
Q 024618          152 LSRQYDKAIESFQTALKLKP  171 (265)
Q Consensus       152 ~~~~~~~A~~~~~~~~~~~~  171 (265)
                      +.|-.+.|+..++-.++.+-
T Consensus       166 ~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  166 QAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HCCchHHHHHHHHHHHHHHc
Confidence            88999999999999888754

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.89  E-value=0.0089  Score=48.57  Aligned_cols=121  Identities=11%  Similarity=-0.053  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc-CCcchhhHHHHHHHHHh
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL-KPNYVRAWANMGISYAN  220 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~  220 (265)
                      .|......-...|+++...-.+++++--.......|...+......|+.+-|-..+..+.+. .|+.+.....-+.+-..
T Consensus       299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~  378 (577)
T KOG1258|consen  299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES  378 (577)
T ss_pred             HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence            44445555566777777777777777666666777888777777778877777777777665 35556667777777788


Q ss_pred             cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccc
Q 024618          221 QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRG  262 (265)
Q Consensus       221 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  262 (265)
                      .|++..|...+++..+..|+...+-..-.....+.|+.+.+.
T Consensus       379 ~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  379 NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            889999999999888877887766666666666777665543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=0.0041  Score=49.21  Aligned_cols=202  Identities=12%  Similarity=0.061  Sum_probs=137.6

Q ss_pred             hcCcHHHHHHHHHHHHhcCCC------hH--------HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC--Cc----
Q 024618           53 ENDDDQQAIAAMMRAHEAEPT------NL--------EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGT--IA----  112 (265)
Q Consensus        53 ~~~~~~~A~~~~~~~~~~~~~------~~--------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~----  112 (265)
                      ..|-+++|.++-++++.....      ..        ..+-.+..|-.-.|++.+|++....+.......+.  ..    
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            467788888888888764211      11        23445566777789999999888777665444433  11    


Q ss_pred             -------hhhhhhhhchHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------
Q 024618          113 -------PPELSDSLYYADVARLFVEAARMSPED---ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---------  173 (265)
Q Consensus       113 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------  173 (265)
                             |......+.++.|...|..+.+.....   .....++|..|.+.|+-+.-.+.++.   +.|.+         
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l  443 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL  443 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence                   555566677888998888888764432   24456789999998876655554443   34432         


Q ss_pred             -HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC---CCCch
Q 024618          174 -YSLWNKLGATQANSVQSADAILAYQRALDLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMN---PKADN  243 (265)
Q Consensus       174 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~~~~~  243 (265)
                       ..+++..|...+.++++.||...+.+.++.....      .-.+..+|.+..-.|+..++.+..+-++++.   |+.+.
T Consensus       444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v  523 (629)
T KOG2300|consen  444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV  523 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence             3567777888889999999999999999875221      2345668899999999999999998888764   44332


Q ss_pred             h---HHHHHHHHHHhCC
Q 024618          244 A---WQYLRISLRYAGR  257 (265)
Q Consensus       244 ~---~~~l~~~~~~~~~  257 (265)
                      -   ...+-.++...|+
T Consensus       524 qLws~si~~~L~~a~g~  540 (629)
T KOG2300|consen  524 QLWSSSILTDLYQALGE  540 (629)
T ss_pred             HHHHHHHHHHHHHHhCc
Confidence            2   2234556666665

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.88  E-value=0.011  Score=50.38  Aligned_cols=224  Identities=16%  Similarity=0.034  Sum_probs=144.7

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCC--C-------hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-----HH
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPE--N-------SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-----LE   76 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~   76 (265)
                      +..+.......++.+|..++.++-..-|.  .       ....-..|.+....|++++|....+.++..-|.+     ..
T Consensus       419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~  498 (894)
T COG2909         419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV  498 (894)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence            45688888999999999999988765443  1       1234456788899999999999999999987764     45


Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhch--HHHHHHHHHH----HhcCCCCHH
Q 024618           77 VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---------PPELSDSLYY--ADVARLFVEA----ARMSPEDAD  141 (265)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~--~~a~~~~~~~----~~~~~~~~~  141 (265)
                      +...+|.+..-.|++++|..+...+.+........+         +.++..+|+.  .+....+...    +...|....
T Consensus       499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f  578 (894)
T COG2909         499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF  578 (894)
T ss_pred             hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence            778888999999999999999998888754443332         5666677732  2222333222    222333333


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCC--HH-HHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-hh----
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKL----KPQD--YS-LWNKLGATQANSVQSADAILAYQRALDLKPNY-VR----  209 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~--~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~----  209 (265)
                      .....+.++...-+++.+..-....++.    .|..  +. ....++.+....|+.++|...+.+....-.+. +.    
T Consensus       579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~  658 (894)
T COG2909         579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL  658 (894)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence            3333344333333366665555555543    2222  22 23478889999999999999888876553222 11    


Q ss_pred             --hHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618          210 --AWANMGISYANQGMYEESVRYYVRA  234 (265)
Q Consensus       210 --~~~~l~~~~~~~g~~~~A~~~~~~a  234 (265)
                        +..........+|+.++|.....+.
T Consensus       659 a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         659 AAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence              1112223345678888888888774

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=0.0075  Score=47.83  Aligned_cols=211  Identities=12%  Similarity=0.059  Sum_probs=141.8

Q ss_pred             HcCChHHHHHHHHHHHHhC---CC---ChH--------HHHHHHHHHhhcCcHHHHHHHHHHHHhc---CCC-------h
Q 024618           19 RKGLLSEAVLALEAEVLKN---PE---NSE--------GWRLLGIAHAENDDDQQAIAAMMRAHEA---EPT-------N   74 (265)
Q Consensus        19 ~~~~~~~A~~~~~~~~~~~---~~---~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-------~   74 (265)
                      -.|-+++|.++-++++...   |.   ...        .+-.+.-|-.-.|++.+|++....+.+.   .|.       .
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            4566777877777776542   11   111        2334566677889999999988887764   343       3


Q ss_pred             HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc------hhhhhhhhchHHHHHHHHHHHhcCCCC---------
Q 024618           75 LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA------PPELSDSLYYADVARLFVEAARMSPED---------  139 (265)
Q Consensus        75 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~~~~---------  139 (265)
                      +..++.+|......+.++.|...|..+.+.........      +..|...++-+.--+.++.   +.|.+         
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l  443 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL  443 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence            56788888888888999999999999988655432211      5666666655444444333   34442         


Q ss_pred             -HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC---Ccchh
Q 024618          140 -ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ------DYSLWNKLGATQANSVQSADAILAYQRALDLK---PNYVR  209 (265)
Q Consensus       140 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~  209 (265)
                       ..+++..|...+.++++.+|...+.+.++....      ..-.+..+|.+....|+..++.....-++...   |+.+.
T Consensus       444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v  523 (629)
T KOG2300|consen  444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV  523 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence             256777788889999999999999999987521      13456778888999999999998887777654   33332


Q ss_pred             ---hHHHHHHHHHhcCC--cHHHHHHHH
Q 024618          210 ---AWANMGISYANQGM--YEESVRYYV  232 (265)
Q Consensus       210 ---~~~~l~~~~~~~g~--~~~A~~~~~  232 (265)
                         ....+-.++...|+  .+...+.+.
T Consensus       524 qLws~si~~~L~~a~g~~~~~~e~e~~~  551 (629)
T KOG2300|consen  524 QLWSSSILTDLYQALGEKGNEMENEAFR  551 (629)
T ss_pred             HHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence               22335566777777  444444443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.78  E-value=0.0085  Score=50.71  Aligned_cols=255  Identities=13%  Similarity=0.010  Sum_probs=160.3

Q ss_pred             chhhhHHHH-HcCChHHHHHHHHHHHHhCCC--ChH----HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC---h-HHHH
Q 024618           10 PLKEGQELF-RKGLLSEAVLALEAEVLKNPE--NSE----GWRLLGIAHAENDDDQQAIAAMMRAHEAEPT---N-LEVL   78 (265)
Q Consensus        10 ~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~--~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~-~~~~   78 (265)
                      .++.|.+++ ...+++.|...+.+++.....  ..+    +.+.++.++.+.+... |...+++.++....   . ....
T Consensus        62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~  140 (608)
T PF10345_consen   62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA  140 (608)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence            467788877 678999999999999776633  222    3455788888888777 99999998876544   1 2222


Q ss_pred             hhhh--hhhhhhhhHHHHHHHHHHHHhcCC--CCCCCc-------hhhhhhhhchHHHHHHHHHHHhc------CCC---
Q 024618           79 LSLG--VSHTNELEQAAALKYLYGWLRHHP--KYGTIA-------PPELSDSLYYADVARLFVEAARM------SPE---  138 (265)
Q Consensus        79 ~~la--~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~------~~~---  138 (265)
                      +.+-  ......+++..|+..++.+.....  .++...       +.+....+..+++++.++++...      +|.   
T Consensus       141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~  220 (608)
T PF10345_consen  141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI  220 (608)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence            2222  222223789999999998887663  333222       55566667677777777766332      111   


Q ss_pred             -CHHHHHHHHH--HHHHccCHHHHHHHHHHHHh---h---CC---C---C-----------------H------------
Q 024618          139 -DADVHIVLGV--LYNLSRQYDKAIESFQTALK---L---KP---Q---D-----------------Y------------  174 (265)
Q Consensus       139 -~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~---~---~~---~---~-----------------~------------  174 (265)
                       ...++..+-.  +....|+++.+...+++.-+   .   .+   .   +                 +            
T Consensus       221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~  300 (608)
T PF10345_consen  221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELY  300 (608)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHH
Confidence             1234444433  45667777777666554422   1   11   0   0                 0            


Q ss_pred             -HHHHHHHHHHHhhcCcHHHHHHHHHHHhcC-------Ccc-------------------hhhHHHHHHHHHhcCCcHHH
Q 024618          175 -SLWNKLGATQANSVQSADAILAYQRALDLK-------PNY-------------------VRAWANMGISYANQGMYEES  227 (265)
Q Consensus       175 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------------------~~~~~~l~~~~~~~g~~~~A  227 (265)
                       -++..-|......+..++|.++++++++.-       +..                   ....+..+.+..-.|++..|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence             123333555666677778888888776541       110                   11335577778889999999


Q ss_pred             HHHHHHHHhcC---CC------CchhHHHHHHHHHHhCCcccccccC
Q 024618          228 VRYYVRALAMN---PK------ADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       228 ~~~~~~a~~~~---~~------~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      ....+.+.+..   |.      .+..++..|..+...|+.+.|...|
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y  427 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQY  427 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99888776543   22      2566778899999999999998765

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.77  E-value=0.00075  Score=42.18  Aligned_cols=92  Identities=18%  Similarity=0.157  Sum_probs=72.1

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCCChH---HHHHHHHHHhhcCc-----------HHHHHHHHHHHHhcCCChHHHH
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPENSE---GWRLLGIAHAENDD-----------DQQAIAAMMRAHEAEPTNLEVL   78 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~   78 (265)
                      +|..++..|++-+|+++.+..+...+++..   .+..-|.++..+..           .-.+++++.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            578899999999999999999998887764   44556777655432           3368899999999999998888


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHhc
Q 024618           79 LSLGVSHTNELEQAAALKYLYGWLRH  104 (265)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~~~~  104 (265)
                      +.+|.-+.....|+++....++++..
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            88888777777777777777776654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.77  E-value=5.5e-05  Score=36.45  Aligned_cols=31  Identities=26%  Similarity=0.540  Sum_probs=20.0

Q ss_pred             hHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          210 AWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      +++.+|.++...|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4556666666666666666666666666665

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.75  E-value=0.0027  Score=49.76  Aligned_cols=210  Identities=12%  Similarity=0.023  Sum_probs=120.6

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhc---
Q 024618           28 LALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRH---  104 (265)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---  104 (265)
                      -.+++++...|-.++.|+.........++-+.|+....+++...|.   ....++.+|...++.+....+|+++.+.   
T Consensus       289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r  365 (660)
T COG5107         289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR  365 (660)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence            3467788888888999999888888999999999998888776665   6777888887777777766767665431   


Q ss_pred             -----CCC-------CCCCc------------------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHc
Q 024618          105 -----HPK-------YGTIA------------------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGV-LYNLS  153 (265)
Q Consensus       105 -----~~~-------~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~-~~~~~  153 (265)
                           ..+       ++...                  ........-.+.|..+|-++-+..-....++..-|. -+...
T Consensus       366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~  445 (660)
T COG5107         366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT  445 (660)
T ss_pred             HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc
Confidence                 000       01000                  000111112233334444433322111222222222 23445


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc--hhhHHHHHHHHHhcCCcHHHHHHH
Q 024618          154 RQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY--VRAWANMGISYANQGMYEESVRYY  231 (265)
Q Consensus       154 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~  231 (265)
                      |++..|...|+-.+...|+++......-..+...++-..|...|++++..-...  ...|-.+-.--..-|+...+...=
T Consensus       446 ~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe  525 (660)
T COG5107         446 GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLE  525 (660)
T ss_pred             CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHH
Confidence            666666666666666666666555555555566666666666666665432222  334444444445556666666655


Q ss_pred             HHHHhcCCC
Q 024618          232 VRALAMNPK  240 (265)
Q Consensus       232 ~~a~~~~~~  240 (265)
                      ++..+..|.
T Consensus       526 ~rf~e~~pQ  534 (660)
T COG5107         526 ERFRELVPQ  534 (660)
T ss_pred             HHHHHHcCc
Confidence            666666555

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.72  E-value=7.6e-05  Score=35.94  Aligned_cols=31  Identities=19%  Similarity=0.093  Sum_probs=15.0

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC
Q 024618           43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEPT   73 (265)
Q Consensus        43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~   73 (265)
                      +++.+|.++...|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3444444554455555555555555444443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.71  E-value=0.0026  Score=53.08  Aligned_cols=205  Identities=13%  Similarity=0.084  Sum_probs=106.6

Q ss_pred             hHHHHHcCChHHHHHHHHHH------HHh----CCCChH-HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhh
Q 024618           14 GQELFRKGLLSEAVLALEAE------VLK----NPENSE-GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLG   82 (265)
Q Consensus        14 ~~~~~~~~~~~~A~~~~~~~------~~~----~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la   82 (265)
                      |..+-+..++++|+++|++.      ++.    .|.... .--..|.-+...|+++.|+..|-.+-.+        ..-.
T Consensus       668 gdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~--------~kai  739 (1636)
T KOG3616|consen  668 GDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL--------IKAI  739 (1636)
T ss_pred             hhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------HHHH
Confidence            45555566677777766542      222    132211 1122456666777777777777654211        1112


Q ss_pred             hhhhhhhhHHHHHHHHHHHHhcCCCCCCC--chhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 024618           83 VSHTNELEQAAALKYLYGWLRHHPKYGTI--APPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAI  160 (265)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  160 (265)
                      .......++.+|+..++............  .+.-|...|+++.|.++|.++-        ....-..+|.+.|+|.+|.
T Consensus       740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~  811 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAF  811 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHH
Confidence            23334556666666665544333222211  1666777777777777776532        2222344566677777777


Q ss_pred             HHHHHHHhhCCCC-HHHHHHHHHHHHhhcCcH-------------HHHHHHHHHH----------hcCCcc-hhhHHHHH
Q 024618          161 ESFQTALKLKPQD-YSLWNKLGATQANSVQSA-------------DAILAYQRAL----------DLKPNY-VRAWANMG  215 (265)
Q Consensus       161 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-------------~A~~~~~~~~----------~~~~~~-~~~~~~l~  215 (265)
                      +.-.++..  |.. ...+...+.-+-..|++.             .|+..|.+.-          +..|+. .+....+|
T Consensus       812 kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~  889 (1636)
T KOG3616|consen  812 KLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFA  889 (1636)
T ss_pred             HHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHH
Confidence            66665532  222 223333343344444443             3444443321          011221 34566677


Q ss_pred             HHHHhcCCcHHHHHHHHHHHh
Q 024618          216 ISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       216 ~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      .-+...|+...|.+.|-++-+
T Consensus       890 ~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  890 KELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             HHHHhccChhHHHHHHHhhhh
Confidence            778888888888888876643

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.70  E-value=0.00085  Score=54.16  Aligned_cols=103  Identities=14%  Similarity=0.029  Sum_probs=78.0

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcH
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDA-DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSA  191 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  191 (265)
                      |......|+...|..++..++...|... ....+++.+++..|-..+|-..+.+++.++...|-.++.+|..+....+.+
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~  693 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS  693 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence            4555567778888888888887777543 346677888888887788888888888887777778888888888888888


Q ss_pred             HHHHHHHHHHhcCCcchhhHHHHH
Q 024618          192 DAILAYQRALDLKPNYVRAWANMG  215 (265)
Q Consensus       192 ~A~~~~~~~~~~~~~~~~~~~~l~  215 (265)
                      .|++.|+.++..+|+++..-..+-
T Consensus       694 ~a~~~~~~a~~~~~~~~~~~~~l~  717 (886)
T KOG4507|consen  694 GALEAFRQALKLTTKCPECENSLK  717 (886)
T ss_pred             HHHHHHHHHHhcCCCChhhHHHHH
Confidence            888888888888888766554443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.70  E-value=0.013  Score=44.79  Aligned_cols=185  Identities=21%  Similarity=0.184  Sum_probs=118.7

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhh----cCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh----h
Q 024618           17 LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAE----NDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN----E   88 (265)
Q Consensus        17 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~   88 (265)
                      ....+++..|...+.++...  .++.....++.++..    ..+..+|..+|..+  ....++.+.+.+|.++..    .
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~  126 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVP  126 (292)
T ss_pred             ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcc
Confidence            34556677777777776542  223566666666644    34567777777744  334566677777777664    2


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcc-------CHHHHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPED-ADVHIVLGVLYNLSR-------QYDKAI  160 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-------~~~~A~  160 (265)
                      .+..+|..+|                               .++....... ......++.++..-+       +...|+
T Consensus       127 ~d~~~A~~~~-------------------------------~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~  175 (292)
T COG0790         127 LDLVKALKYY-------------------------------EKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKAL  175 (292)
T ss_pred             cCHHHHHHHH-------------------------------HHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHH
Confidence            2444555444                               4444432222 233566666655431       234788


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC--------------
Q 024618          161 ESFQTALKLKPQDYSLWNKLGATQAN----SVQSADAILAYQRALDLKPNYVRAWANMGISYANQG--------------  222 (265)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------  222 (265)
                      ..|.++....  ++.+...+|.+|..    ..++.+|..+|.++.+...  ....+.++ ++...|              
T Consensus       176 ~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~  250 (292)
T COG0790         176 YLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKE  250 (292)
T ss_pred             HHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccC
Confidence            8888887764  77888888887765    3578899999999988776  67777888 666555              


Q ss_pred             -CcHHHHHHHHHHHhcCCCC
Q 024618          223 -MYEESVRYYVRALAMNPKA  241 (265)
Q Consensus       223 -~~~~A~~~~~~a~~~~~~~  241 (265)
                       +...|..++..+....+..
T Consensus       251 ~~~~~a~~~~~~~~~~~~~~  270 (292)
T COG0790         251 EDKKQALEWLQKACELGFDN  270 (292)
T ss_pred             CCHHHHHHHHHHHHHcCChh
Confidence             7778888888887765543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.67  E-value=0.0084  Score=51.93  Aligned_cols=160  Identities=15%  Similarity=0.113  Sum_probs=96.8

Q ss_pred             ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024618           73 TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL  152 (265)
Q Consensus        73 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  152 (265)
                      +.+.+|..+|.+....|...+|++.|-++  .+|....-........|.|++-++++.-+-+.... +.+-..+...|.+
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAK 1178 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHH
Confidence            45678888888888888888888777543  12222222256666777777777777666554322 3333444455555


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHH
Q 024618          153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYV  232 (265)
Q Consensus       153 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  232 (265)
                      .++..+-.+.+     ..|+.+ -....|.-++..|.|+.|.-.|..        ..-|..++..+..+|+|+.|.+..+
T Consensus      1179 t~rl~elE~fi-----~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1179 TNRLTELEEFI-----AGPNVA-NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred             hchHHHHHHHh-----cCCCch-hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            56555443332     234443 335567777777777777766653        3446677888888888888888877


Q ss_pred             HHHhcCCCCchhHHHHHHHHHH
Q 024618          233 RALAMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       233 ~a~~~~~~~~~~~~~l~~~~~~  254 (265)
                      ++-     +...|.....+...
T Consensus      1245 KAn-----s~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1245 KAN-----STKTWKEVCFACVD 1261 (1666)
T ss_pred             hcc-----chhHHHHHHHHHhc
Confidence            752     33444444444433

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.67  E-value=0.00017  Score=53.37  Aligned_cols=75  Identities=20%  Similarity=0.213  Sum_probs=66.4

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH   85 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   85 (265)
                      ++.|....+.|+.++|..+|+.++...|++++++..+|...-..++.-+|-.+|-+++.++|.+.+++.+.++..
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            355667778999999999999999999999999999999998889999999999999999999998888776543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.66  E-value=0.0021  Score=43.27  Aligned_cols=83  Identities=16%  Similarity=-0.040  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ  221 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  221 (265)
                      .+..+...-...++.+++...+...--+.|..+..-..-|.++...|++.+|+..++.+....|..+.+--.++.|+..+
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL   91 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence            34444555556666777777776666667777777777777777777777777777776666666666666666666666


Q ss_pred             CCc
Q 024618          222 GMY  224 (265)
Q Consensus       222 g~~  224 (265)
                      |+.
T Consensus        92 ~D~   94 (160)
T PF09613_consen   92 GDP   94 (160)
T ss_pred             CCh
Confidence            653

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.66  E-value=0.0015  Score=51.63  Aligned_cols=93  Identities=15%  Similarity=0.245  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC-cHHHHHHHHHH
Q 024618          122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ-SADAILAYQRA  200 (265)
Q Consensus       122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~  200 (265)
                      ...-...|+.+....+.++..|........+.+.+.+--..|.+++..+|+++..|..-+.-.+..+. .+.|...|.++
T Consensus        87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            44556777888888888888888877777777778888888888888888888888887776666555 77788888888


Q ss_pred             HhcCCcchhhHHHH
Q 024618          201 LDLKPNYVRAWANM  214 (265)
Q Consensus       201 ~~~~~~~~~~~~~l  214 (265)
                      +..+|+.+..|...
T Consensus       167 LR~npdsp~Lw~ey  180 (568)
T KOG2396|consen  167 LRFNPDSPKLWKEY  180 (568)
T ss_pred             hhcCCCChHHHHHH
Confidence            88888887776543

>PRK10941 hypothetical protein; Provisional

Probab=97.66  E-value=0.00091  Score=49.73  Aligned_cols=72  Identities=17%  Similarity=0.107  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618          176 LWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY  247 (265)
Q Consensus       176 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  247 (265)
                      ...++-.++...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+-.-
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            345566677777888888888888888888887777778888888888888888888888888877765443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.66  E-value=8.3e-05  Score=36.69  Aligned_cols=26  Identities=46%  Similarity=0.813  Sum_probs=15.9

Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618          211 WANMGISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       211 ~~~l~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      +..+|.+|.+.|++++|+++|++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45666666666666666666666443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.57  E-value=0.00055  Score=36.86  Aligned_cols=38  Identities=24%  Similarity=0.333  Sum_probs=21.8

Q ss_pred             hHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618          210 AWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY  247 (265)
Q Consensus       210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  247 (265)
                      .++.+|..+.++|+|++|..+.+.++++.|++..+...
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L   40 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            34556666666666666666666666666666555433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.54  E-value=0.0026  Score=42.84  Aligned_cols=84  Identities=14%  Similarity=0.039  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618          175 SLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  254 (265)
                      ..+..+..+-...++.+++...+.-.--+.|..+..-..-|.++...|++.+|+..++.+....|..+.+.-.++.|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            34556666677888999999999998899999999999999999999999999999999999999989888889999988


Q ss_pred             hCCc
Q 024618          255 AGRY  258 (265)
Q Consensus       255 ~~~~  258 (265)
                      +|+.
T Consensus        91 ~~D~   94 (160)
T PF09613_consen   91 LGDP   94 (160)
T ss_pred             cCCh
Confidence            8875

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.54  E-value=0.0022  Score=40.09  Aligned_cols=91  Identities=16%  Similarity=0.213  Sum_probs=62.1

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcC-----------cHHHHHHHHHHHhcCCcchhhHH
Q 024618          147 GVLYNLSRQYDKAIESFQTALKLKPQDY---SLWNKLGATQANSVQ-----------SADAILAYQRALDLKPNYVRAWA  212 (265)
Q Consensus       147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~~  212 (265)
                      +.-++..|++-+|++..+..+...+++.   ..+..-|.++..+..           .-.+++.+.++..+.|..+..++
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~   82 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF   82 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence            4455666777777777777766655554   344445555543321           23478888888888898888888


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          213 NMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       213 ~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      .+|.-+....-|+++..-.++++..
T Consensus        83 ~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   83 ELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            8888777777788888888887765

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.53  E-value=0.004  Score=49.42  Aligned_cols=92  Identities=13%  Similarity=0.121  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHH
Q 024618           91 QAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ-YDKAIESFQTA  166 (265)
Q Consensus        91 ~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~  166 (265)
                      ...-...|+.+....+.+...|   .....+.+.+.+--..|.+++..+|+++++|..-|.-.+..+. .+.|...+.++
T Consensus        87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            3455677888888888888877   3334444558889999999999999999999999988777766 99999999999


Q ss_pred             HhhCCCCHHHHHHHHH
Q 024618          167 LKLKPQDYSLWNKLGA  182 (265)
Q Consensus       167 ~~~~~~~~~~~~~l~~  182 (265)
                      ++.+|+++..|...-.
T Consensus       167 LR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  167 LRFNPDSPKLWKEYFR  182 (568)
T ss_pred             hhcCCCChHHHHHHHH
Confidence            9999999988765433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.51  E-value=0.00021  Score=35.19  Aligned_cols=26  Identities=23%  Similarity=0.166  Sum_probs=16.7

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618           44 WRLLGIAHAENDDDQQAIAAMMRAHE   69 (265)
Q Consensus        44 ~~~l~~~~~~~~~~~~A~~~~~~~~~   69 (265)
                      +..+|.+|...|++++|+++|++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55667777777777777777777443

>PRK10941 hypothetical protein; Provisional

Probab=97.50  E-value=0.0028  Score=47.22  Aligned_cols=77  Identities=13%  Similarity=0.001  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS  217 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  217 (265)
                      ....++-.++.+.++++.|+.+.+.++...|+++.-+...|.+|.+.|.+..|..-++..++..|+++.+-.....+
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            34566777899999999999999999999999999999999999999999999999999999999988766544443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.50  E-value=0.00048  Score=51.06  Aligned_cols=111  Identities=16%  Similarity=0.148  Sum_probs=79.0

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH----
Q 024618          144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA----  219 (265)
Q Consensus       144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~----  219 (265)
                      ...+.-....|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+...-    
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~plV~~  199 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPLVSA  199 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchHHHH
Confidence            3445556778999999999999999999999999999999999999999999999999999999998887655321    


Q ss_pred             hcCCcHHHHHHHHHHHhcCCCC-chhHHHHHHHHHH
Q 024618          220 NQGMYEESVRYYVRALAMNPKA-DNAWQYLRISLRY  254 (265)
Q Consensus       220 ~~g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~  254 (265)
                      --.++-+.+..-...+..-+.. ......+-..|+.
T Consensus       200 iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf~  235 (472)
T KOG3824|consen  200 IDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETYFL  235 (472)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            1122333444444444333333 3333444455543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.49  E-value=0.0042  Score=37.87  Aligned_cols=64  Identities=13%  Similarity=0.104  Sum_probs=34.4

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhhcC
Q 024618          126 ARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD--YSLWNKLGATQANSVQ  189 (265)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~  189 (265)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++.  ..+...+-.++...|.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            344555666666666666666666666666666666666666665543  3333333344444443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.48  E-value=0.0041  Score=37.92  Aligned_cols=66  Identities=15%  Similarity=0.119  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc--hhhHHHHHHHHHhcCCc
Q 024618          159 AIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY--VRAWANMGISYANQGMY  224 (265)
Q Consensus       159 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~  224 (265)
                      .+..+++.+..+|++..+.+.++..+...|++++|++.+-.++..+++.  ..+...+-.++...|.-
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            3455667777777777777777777777777777777777777776654  33444444455555543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.47  E-value=0.00075  Score=36.33  Aligned_cols=40  Identities=20%  Similarity=0.098  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhh
Q 024618           42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSL   81 (265)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   81 (265)
                      +.++.+|..+++.|+|++|..+.+.+++.+|++..+....
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            3456677777777777777777777777777776654443

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.47  E-value=0.044  Score=51.81  Aligned_cols=114  Identities=12%  Similarity=0.083  Sum_probs=87.7

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-----------
Q 024618          139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY-----------  207 (265)
Q Consensus       139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------  207 (265)
                      -.+.|...|++....|.++.|...+-.+.+..  -+.+....|..+...|+-..|+..+++.++.+-.+           
T Consensus      1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence            35789999999999999999999999888765  57889999999999999999999999999653211           


Q ss_pred             ------hhhHHHHHHHHHhcCCc--HHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618          208 ------VRAWANMGISYANQGMY--EESVRYYVRALAMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       208 ------~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  254 (265)
                            ..+...++......|+.  .+-+..|+.+.+..|...+.++.+|.-|.+
T Consensus      1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred             hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence                  12334455555555653  345678899999999888888888855543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.45  E-value=0.023  Score=47.72  Aligned_cols=77  Identities=16%  Similarity=0.199  Sum_probs=32.3

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHhcCC
Q 024618          145 VLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY-VRAWANMGISYANQGM  223 (265)
Q Consensus       145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~  223 (265)
                      .++.-|...|+++.|.+.|.++-        ....-...|-+.|++..|.+.-+++.  .|.. ...|...+.-....|+
T Consensus       770 ~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgk  839 (1636)
T KOG3616|consen  770 EIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGK  839 (1636)
T ss_pred             HHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcc
Confidence            34444445555555554444331        11112233444455555444444332  1221 2233344444455555


Q ss_pred             cHHHHHHH
Q 024618          224 YEESVRYY  231 (265)
Q Consensus       224 ~~~A~~~~  231 (265)
                      +.+|...|
T Consensus       840 f~eaeqly  847 (1636)
T KOG3616|consen  840 FAEAEQLY  847 (1636)
T ss_pred             hhhhhhee
Confidence            55555444

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.44  E-value=0.046  Score=44.67  Aligned_cols=180  Identities=12%  Similarity=-0.009  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc----hhhhh
Q 024618           42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA----PPELS  117 (265)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~  117 (265)
                      ..|......-...|+++...-.|++++---....+.|...+......|+.+-|...+..+.+.........    +.+..
T Consensus       298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e  377 (577)
T KOG1258|consen  298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE  377 (577)
T ss_pred             HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence            35666666677889999999999999887777788899988888888988888888888877655544433    66667


Q ss_pred             hhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH---HHHHHHhhCCCC----HHHHHHHHHH-HHhhcC
Q 024618          118 DSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE---SFQTALKLKPQD----YSLWNKLGAT-QANSVQ  189 (265)
Q Consensus       118 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~---~~~~~~~~~~~~----~~~~~~l~~~-~~~~~~  189 (265)
                      ..|++..|...+++.....|+...+-...+....+.|+.+.+..   .+..... ...+    ...+...+.. +.-.++
T Consensus       378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d  456 (577)
T KOG1258|consen  378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLRYKIRED  456 (577)
T ss_pred             hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHHHHHhcC
Confidence            77888899999998888778888887777888888888888774   3222222 1122    2223333332 344678


Q ss_pred             cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC
Q 024618          190 SADAILAYQRALDLKPNYVRAWANMGISYANQG  222 (265)
Q Consensus       190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  222 (265)
                      .+.|...+.+++...|.+...+..+..+....+
T Consensus       457 ~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  457 ADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            888888999999888888777777776666554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.43  E-value=0.036  Score=43.53  Aligned_cols=130  Identities=12%  Similarity=0.026  Sum_probs=95.8

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------------CCC------------C---HHHHHH
Q 024618          129 FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL--------------KPQ------------D---YSLWNK  179 (265)
Q Consensus       129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------~~~------------~---~~~~~~  179 (265)
                      +-..++.+|-+.+++..++.++..+|+...|.+.+++++-.              ++.            |   ..+.+.
T Consensus        29 l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r  108 (360)
T PF04910_consen   29 LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR  108 (360)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHH
Confidence            44556789999999999999999999999999999998632              111            1   134556


Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHhcCCc-chhhH-HHHHHHHHhcCCcHHHHHHHHHHHhcCC-----CCchhHHHHHHHH
Q 024618          180 LGATQANSVQSADAILAYQRALDLKPN-YVRAW-ANMGISYANQGMYEESVRYYVRALAMNP-----KADNAWQYLRISL  252 (265)
Q Consensus       180 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~l~~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~  252 (265)
                      ....+.+.|-+..|.++.+-.+.++|. ||-.. +.+-....+.++++-=++.++.......     .-|..-+.++.++
T Consensus       109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~  188 (360)
T PF04910_consen  109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY  188 (360)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence            667788899999999999999999998 66544 4444455677788777777776554211     1245667788888


Q ss_pred             HHhCCc
Q 024618          253 RYAGRY  258 (265)
Q Consensus       253 ~~~~~~  258 (265)
                      ..+++.
T Consensus       189 ~~l~~~  194 (360)
T PF04910_consen  189 FRLEKE  194 (360)
T ss_pred             HHhcCc
Confidence            888776

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>smart00028 TPR Tetratricopeptide repeats

Probab=97.38  E-value=0.00041  Score=32.81  Aligned_cols=31  Identities=39%  Similarity=0.796  Sum_probs=18.8

Q ss_pred             hHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          210 AWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      ++..+|.++..+|++++|+..++++++..|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4555666666666666666666666665553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.35  E-value=0.05  Score=43.06  Aligned_cols=183  Identities=12%  Similarity=0.083  Sum_probs=105.9

Q ss_pred             HHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhh------hhhh-hhhhHHH---HHHHHHHHHhcCCCCCCCc------
Q 024618           49 IAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLG------VSHT-NELEQAA---ALKYLYGWLRHHPKYGTIA------  112 (265)
Q Consensus        49 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la------~~~~-~~~~~~~---A~~~~~~~~~~~~~~~~~~------  112 (265)
                      ....+.++..+|..++.-...++|+.....-.+.      .+.. .-..+..   =+..++.+-..+-+.....      
T Consensus       306 s~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~  385 (549)
T PF07079_consen  306 SFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFG  385 (549)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence            3446677888888888877778887642211111      0000 1111111   1222222222222211111      


Q ss_pred             hhhhhhhhc-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH--HHHHHHHh---------hCC---CCHHHH
Q 024618          113 PPELSDSLY-YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAI--ESFQTALK---------LKP---QDYSLW  177 (265)
Q Consensus       113 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~--~~~~~~~~---------~~~---~~~~~~  177 (265)
                      +.-+...|. -++|+.+++.+++..|.+.......-..  -...|.+|+  ..+.+.+.         +.|   .+.+.-
T Consensus       386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eia  463 (549)
T PF07079_consen  386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIA  463 (549)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence            555666666 6788999999998888776433222111  111122222  11222221         112   223444


Q ss_pred             HHHHH--HHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618          178 NKLGA--TQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA  234 (265)
Q Consensus       178 ~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  234 (265)
                      ..++.  .++.+|+|.++.-+-.-..++.| .+.++..+|.+.....+|++|..++...
T Consensus       464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            44544  46789999999999888889999 6899999999999999999999999764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.013  Score=47.54  Aligned_cols=127  Identities=15%  Similarity=0.107  Sum_probs=78.5

Q ss_pred             HHHHHHhcCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHH-HHhcC
Q 024618          128 LFVEAARMSPEDADVHIV--LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQR-ALDLK  204 (265)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~  204 (265)
                      .+...+..+|.++.....  ++..+...++...+.......+..+|.+..+..+++......|....+...+.. +....
T Consensus        53 a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~  132 (620)
T COG3914          53 ALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLS  132 (620)
T ss_pred             HHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence            333334455555554332  355556666776777777777777777777777777776666665555555444 56666


Q ss_pred             CcchhhHHHH------HHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618          205 PNYVRAWANM------GISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       205 ~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  254 (265)
                      |.+......+      +.....+|+..++.....++....|.++.....+......
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~  188 (620)
T COG3914         133 PDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQE  188 (620)
T ss_pred             cchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence            6665544333      6666667777777777777777777776655555544333

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.32  E-value=0.0045  Score=51.30  Aligned_cols=194  Identities=14%  Similarity=0.083  Sum_probs=115.0

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhh----------hhhhh
Q 024618           16 ELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS----------LGVSH   85 (265)
Q Consensus        16 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------la~~~   85 (265)
                      .+...-..++|+++    ++.+| ++..|..++......-.++-|...|-+.-....  ...--.          .+.+-
T Consensus       672 ~Lve~vgledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~G--ik~vkrl~~i~s~~~q~aei~  744 (1189)
T KOG2041|consen  672 NLVEAVGLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAG--IKLVKRLRTIHSKEQQRAEIS  744 (1189)
T ss_pred             HHHHHhchHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccc--hhHHHHhhhhhhHHHHhHhHh
Confidence            33344444555443    33344 678888888887777777777777766533211  111122          22333


Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHH
Q 024618           86 TNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESF  163 (265)
Q Consensus        86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~  163 (265)
                      ..-|++++|.+.|-.+     +-.+....+....|+|-...++++..-.-+.+  ...++..+|..+.....|++|.++|
T Consensus       745 ~~~g~feeaek~yld~-----drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY  819 (1189)
T KOG2041|consen  745 AFYGEFEEAEKLYLDA-----DRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY  819 (1189)
T ss_pred             hhhcchhHhhhhhhcc-----chhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3346677777665322     11222245556666666665555443221111  1367788888888888888888888


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHH
Q 024618          164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR  233 (265)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  233 (265)
                      ...-.        .-+...+++...++++-    +.....-|++...+-.+|..+...|.-++|.+.|-+
T Consensus       820 ~~~~~--------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  820 SYCGD--------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             Hhccc--------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            76532        23455666666666653    333344577778888899999999999999888765

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=97.30  E-value=0.0023  Score=50.62  Aligned_cols=126  Identities=13%  Similarity=0.104  Sum_probs=103.0

Q ss_pred             hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHH
Q 024618          116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL  195 (265)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  195 (265)
                      ....|+...|-+-+..+++..|.+|......+.+...+|+|+.+...+..+-..-.....+...+-......|++++|..
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            34567777777888888899999999989999999999999999988877666545555566667777888999999999


Q ss_pred             HHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC
Q 024618          196 AYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA  241 (265)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  241 (265)
                      .-.-.+...-.++++...-+.....+|-+++|..++++.+.++|..
T Consensus       379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            8888887777777777777777778889999999999999988754

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.29  E-value=0.0045  Score=40.99  Aligned_cols=76  Identities=13%  Similarity=-0.069  Sum_probs=44.8

Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCC
Q 024618          148 VLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM  223 (265)
Q Consensus       148 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  223 (265)
                      ..-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+..+..+..--.++.|+.-+|+
T Consensus        18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            3334456666666666665556666666666666666666666666666666655555545444455555555554

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.28  E-value=0.027  Score=47.02  Aligned_cols=25  Identities=20%  Similarity=0.287  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHH
Q 024618          175 SLWNKLGATQANSVQSADAILAYQR  199 (265)
Q Consensus       175 ~~~~~l~~~~~~~~~~~~A~~~~~~  199 (265)
                      .++..+|..+..+..+++|.++|..
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~  821 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSY  821 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444444444444443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.27  E-value=0.05  Score=41.51  Aligned_cols=147  Identities=20%  Similarity=0.165  Sum_probs=102.1

Q ss_pred             hhhhHHHHH----cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhh----cCcHHHHHHHHHHHHhcCCCh-HHHHhhh
Q 024618           11 LKEGQELFR----KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAE----NDDDQQAIAAMMRAHEAEPTN-LEVLLSL   81 (265)
Q Consensus        11 ~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~-~~~~~~l   81 (265)
                      +..+..+..    ..+..+|...|+.+  ....++.+.+.+|..+..    ..+..+|..+|.++.+..... ..+.+.+
T Consensus        77 ~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l  154 (292)
T COG0790          77 ALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRL  154 (292)
T ss_pred             HHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence            344444443    34578899999854  345678899999999887    559999999999999876544 3457777


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHH
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL----SRQYD  157 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~  157 (265)
                      +.+|..-. ...+...                       +...|...+.++....  ++.+...+|.+|..    ..++.
T Consensus       155 ~~~~~~g~-~~~~~~~-----------------------~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~  208 (292)
T COG0790         155 GLAYLSGL-QALAVAY-----------------------DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLK  208 (292)
T ss_pred             HHHHHcCh-hhhcccH-----------------------HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHH
Confidence            77776543 1111110                       1235666666665544  67888889988755    34889


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 024618          158 KAIESFQTALKLKPQDYSLWNKLGATQANSV  188 (265)
Q Consensus       158 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  188 (265)
                      +|...|.++.+...  ....+.++ ++...|
T Consensus       209 ~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         209 KAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence            99999999998765  78888888 666555

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.25  E-value=0.044  Score=40.40  Aligned_cols=185  Identities=10%  Similarity=0.028  Sum_probs=112.1

Q ss_pred             HcCChHHHHHHHHHHHHhCCCChH----HHHHHHHHHhhcCcHHHHHHHHHHHHhcCC-----ChHH-HHhhhhhhhhhh
Q 024618           19 RKGLLSEAVLALEAEVLKNPENSE----GWRLLGIAHAENDDDQQAIAAMMRAHEAEP-----TNLE-VLLSLGVSHTNE   88 (265)
Q Consensus        19 ~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~-~~~~la~~~~~~   88 (265)
                      ...+.++|+..|+++++..++..+    ++-.+..+.+.++++++-.+.|.+.+..-.     +..+ ....+-..-...
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            345889999999999999887643    667788899999999999998888775321     1111 111111111112


Q ss_pred             hhHHHHHHHHHHHHhc--CCCCCCCc-------hhhhhhhhchHHHHHHHHHHHhcCCCC------------HHHHHHHH
Q 024618           89 LEQAAALKYLYGWLRH--HPKYGTIA-------PPELSDSLYYADVARLFVEAARMSPED------------ADVHIVLG  147 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~l~  147 (265)
                      .+.+--...|+..+..  +.++...|       +.++...+.+.+-.+.+++..+....+            .+++..-.
T Consensus       119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI  198 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI  198 (440)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence            2222222333333221  12222333       788888888887777776665432211            23455555


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCC--HHHHH----HHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618          148 VLYNLSRQYDKAIESFQTALKLKPQD--YSLWN----KLGATQANSVQSADAILAYQRALDL  203 (265)
Q Consensus       148 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~  203 (265)
                      .+|..+++-.+-...|++++.+..--  |.+.-    .=|..+...|++++|-.-|-++++.
T Consensus       199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN  260 (440)
T KOG1464|consen  199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN  260 (440)
T ss_pred             hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence            67778888888888888888764332  22221    2234567788888888777777765

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=97.22  E-value=0.009  Score=47.47  Aligned_cols=123  Identities=12%  Similarity=0.006  Sum_probs=99.3

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHH
Q 024618           16 ELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL   95 (265)
Q Consensus        16 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~   95 (265)
                      .....|+.-.|-.-+..++...|.+|......+.+...+|+|+.+...+..+-..-.....+...+-+.....|++++|.
T Consensus       298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~  377 (831)
T PRK15180        298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL  377 (831)
T ss_pred             HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence            34567999999999999999999999999999999999999999998887766654444455555667777889999999


Q ss_pred             HHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCC
Q 024618           96 KYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPE  138 (265)
Q Consensus        96 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~  138 (265)
                      ......+...-+++...   +......|-++++...+++.+.++|.
T Consensus       378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence            98888887766666665   56666778889999999999888764

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.18  E-value=0.13  Score=44.31  Aligned_cols=197  Identities=11%  Similarity=-0.038  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC---------hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC
Q 024618           41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT---------NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI  111 (265)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  111 (265)
                      |......+.......++.+|..++.++...-|.         .....-..|.+....|+++.|++..+.++..-|.....
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~  494 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR  494 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence            344455667777888999999888887665433         12445556778888999999999999999988876544


Q ss_pred             c--------hhhhhhhhchHHHHHHHHHHHhcCCC----C--HHHHHHHHHHHHHccCH--HHHHHHHHHHH----hhCC
Q 024618          112 A--------PPELSDSLYYADVARLFVEAARMSPE----D--ADVHIVLGVLYNLSRQY--DKAIESFQTAL----KLKP  171 (265)
Q Consensus       112 ~--------~~~~~~~~~~~~a~~~~~~~~~~~~~----~--~~~~~~l~~~~~~~~~~--~~A~~~~~~~~----~~~~  171 (265)
                      .        +....-.|++++|..+...+.+....    .  ..+....+.++..+|+.  .+....+...-    ...|
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~  574 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP  574 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence            3        77888889999999888888776321    1  22344456777888833  23333333222    2233


Q ss_pred             CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc----CCcc--hh-hHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          172 QDYSLWNKLGATQANSVQSADAILAYQRALDL----KPNY--VR-AWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       172 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~--~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      .+.......+.++...-+++.+..-....++.    .|..  .. ..+.++.+.+..|+.++|...+......
T Consensus       575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l  647 (894)
T COG2909         575 RHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL  647 (894)
T ss_pred             cchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            33333333444433333366555555555544    2222  22 2347899999999999999999887765

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.18  E-value=0.035  Score=43.94  Aligned_cols=200  Identities=11%  Similarity=-0.060  Sum_probs=133.8

Q ss_pred             HHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhc------
Q 024618           62 AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARM------  135 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------  135 (265)
                      -.+++++...|-.+++|+.........++-+.|+...++++...|.....++..+...++.+....+|+++.+.      
T Consensus       289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys  368 (660)
T COG5107         289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYS  368 (660)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHh
Confidence            45677888888889999999999999999999999999999998885555566665555555555555544321      


Q ss_pred             ---------CCCCH----H-----------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHhhcCc
Q 024618          136 ---------SPEDA----D-----------VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT-QANSVQS  190 (265)
Q Consensus       136 ---------~~~~~----~-----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~  190 (265)
                               ..+++    +           ++...-..-.+..-.+.|...|-++-+..-..+.++..-|.+ +...|++
T Consensus       369 ~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~  448 (660)
T COG5107         369 MGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDR  448 (660)
T ss_pred             hhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCc
Confidence                     00111    1           122222223344446677777777766532334444444433 5567999


Q ss_pred             HHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhCCcccc
Q 024618          191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA--DNAWQYLRISLRYAGRYPNR  261 (265)
Q Consensus       191 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A  261 (265)
                      .-|-..|+-.+...|+++......-..+...++-+.|...|++++..-...  ...|..+..--..-|+...+
T Consensus       449 ~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v  521 (660)
T COG5107         449 ATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNV  521 (660)
T ss_pred             chHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHH
Confidence            999999999999999887666666677788899999999999888653333  34555555555555665544

>smart00028 TPR Tetratricopeptide repeats

Probab=97.16  E-value=0.00094  Score=31.47  Aligned_cols=31  Identities=29%  Similarity=0.428  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618          176 LWNKLGATQANSVQSADAILAYQRALDLKPN  206 (265)
Q Consensus       176 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  206 (265)
                      ++..+|.++...+++++|+..++++++..|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4555566666666666666666666555543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=97.12  E-value=0.0017  Score=48.31  Aligned_cols=85  Identities=12%  Similarity=0.200  Sum_probs=54.1

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618          129 FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNK-LGATQANSVQSADAILAYQRALDLKPNY  207 (265)
Q Consensus       129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~  207 (265)
                      +.++....|+++..|...+......|-+.+--..|.++++.+|.+.+.|.. .+.-+...++++.+...|.+++..+|.+
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            444444556666666666666666666666666666677777766666665 3334555666666666777777666666


Q ss_pred             hhhHHH
Q 024618          208 VRAWAN  213 (265)
Q Consensus       208 ~~~~~~  213 (265)
                      |..|..
T Consensus       176 p~iw~e  181 (435)
T COG5191         176 PRIWIE  181 (435)
T ss_pred             chHHHH
Confidence            666654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.10  E-value=0.074  Score=40.28  Aligned_cols=191  Identities=17%  Similarity=0.037  Sum_probs=114.3

Q ss_pred             chhhhHHHHHcC-ChHHHHHHHHHHHHh----CC---CC-------hHHHHHHHHHHhhcCcHH---HHHHHHHHHHhcC
Q 024618           10 PLKEGQELFRKG-LLSEAVLALEAEVLK----NP---EN-------SEGWRLLGIAHAENDDDQ---QAIAAMMRAHEAE   71 (265)
Q Consensus        10 ~~~~~~~~~~~~-~~~~A~~~~~~~~~~----~~---~~-------~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~   71 (265)
                      .+..|......+ ++++|+..++++.+.    .+   ..       ..++..++.++...+.++   +|....+.+-...
T Consensus        38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~  117 (278)
T PF08631_consen   38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY  117 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence            367788889999 999999999999876    21   11       125667888998887755   4556666666667


Q ss_pred             CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhh--hhhhhchHHHHHHHHHHHhc--CCCCHHHHH
Q 024618           72 PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPE--LSDSLYYADVARLFVEAARM--SPEDADVHI  144 (265)
Q Consensus        72 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~  144 (265)
                      |+.+..+...-.+....++.+.+.+.+.+++...+-....+   ...  .........+...+...+..  .|.... +.
T Consensus       118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~  196 (278)
T PF08631_consen  118 GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WL  196 (278)
T ss_pred             CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HH
Confidence            88787775555666668888899999988887654222222   111  11223344555666555543  232221 22


Q ss_pred             HHH---HHHHHcc--CHHHH--HHHHHHHHh----h--CCCCH-------HHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618          145 VLG---VLYNLSR--QYDKA--IESFQTALK----L--KPQDY-------SLWNKLGATQANSVQSADAILAYQRAL  201 (265)
Q Consensus       145 ~l~---~~~~~~~--~~~~A--~~~~~~~~~----~--~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~  201 (265)
                      ...   .++...+  +....  ++.+...+.    .  .|-++       ..+.+.|...++.++|++|+..|+-++
T Consensus       197 e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  197 EKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            222   2222222  21222  222322222    1  22222       335566888899999999999999765

It is also involved in sporulation [].

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.09  E-value=0.03  Score=35.57  Aligned_cols=91  Identities=18%  Similarity=0.135  Sum_probs=64.8

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHh-------cCCcc
Q 024618          147 GVLYNLSRQYDKAIESFQTALKLKPQD------------YSLWNKLGATQANSVQSADAILAYQRALD-------LKPNY  207 (265)
Q Consensus       147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~  207 (265)
                      |.-.+..|-|++|...+++++.....-            .-.+..|+..+..+|+|++++..-++++.       ++.+.
T Consensus        16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde   95 (144)
T PF12968_consen   16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE   95 (144)
T ss_dssp             HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence            344566788999999999998764332            34566788888999999887776666653       34444


Q ss_pred             hh----hHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          208 VR----AWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       208 ~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      ..    +.+..+..+..+|+.++|+..|+.+-++
T Consensus        96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            33    4467888999999999999999988764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.07  E-value=0.018  Score=41.49  Aligned_cols=99  Identities=19%  Similarity=0.205  Sum_probs=63.8

Q ss_pred             HccCHHHHHHHHHHHHhh----C-CC--CHHHHHHHHHHHHhhcCcH-------HHHHHHHHHHhcCCc------chhhH
Q 024618          152 LSRQYDKAIESFQTALKL----K-PQ--DYSLWNKLGATQANSVQSA-------DAILAYQRALDLKPN------YVRAW  211 (265)
Q Consensus       152 ~~~~~~~A~~~~~~~~~~----~-~~--~~~~~~~l~~~~~~~~~~~-------~A~~~~~~~~~~~~~------~~~~~  211 (265)
                      ....+++|++.|.-++-.    . +.  -+..+..+|.+|...|+.+       .|+..|+++++....      ...+.
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            345666777776666532    1 11  1456778888888888854       455556666544322      24677


Q ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc-hhHHHHHH
Q 024618          212 ANMGISYANQGMYEESVRYYVRALAMNPKAD-NAWQYLRI  250 (265)
Q Consensus       212 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~l~~  250 (265)
                      +.+|.+..+.|++++|+.+|.+++.....+. .....++.
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            8899999999999999999999987643332 24444443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.05  E-value=0.027  Score=40.59  Aligned_cols=95  Identities=17%  Similarity=0.186  Sum_probs=66.5

Q ss_pred             hhcCcHHHHHHHHHHHHhc----CCC---hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHH
Q 024618           52 AENDDDQQAIAAMMRAHEA----EPT---NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYAD  124 (265)
Q Consensus        52 ~~~~~~~~A~~~~~~~~~~----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (265)
                      .....+++|++.|.-|+-.    .+.   -+..+..+|++|...|+.+.....++                        .
T Consensus        88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~------------------------~  143 (214)
T PF09986_consen   88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLR------------------------K  143 (214)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHH------------------------H
Confidence            3455778888887777643    111   25678889999999998766666654                        4


Q ss_pred             HHHHHHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024618          125 VARLFVEAARMSP------EDADVHIVLGVLYNLSRQYDKAIESFQTALKLK  170 (265)
Q Consensus       125 a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  170 (265)
                      |+..|.++.....      +...+.+.+|.+..+.|++++|...|.+++...
T Consensus       144 Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  144 ALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            4456666665432      224677888888888888888888888888753

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.04  E-value=0.0013  Score=46.70  Aligned_cols=59  Identities=27%  Similarity=0.395  Sum_probs=43.2

Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618          149 LYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY  207 (265)
Q Consensus       149 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  207 (265)
                      .....++.+.|.+.|.+++...|.....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34556777777777777777777777777777777777777777777777777777765

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.098  Score=42.35  Aligned_cols=66  Identities=14%  Similarity=0.086  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHhcC---Cc----chhhHHHHHHHHHhcCC-cHHHHHHHHHHHhcCCCC
Q 024618          176 LWNKLGATQANSVQSADAILAYQRALDLK---PN----YVRAWANMGISYANQGM-YEESVRYYVRALAMNPKA  241 (265)
Q Consensus       176 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~  241 (265)
                      .+..+|.++...|+...|..+|...++..   ..    .|.+++.+|..+..+|. ..++..++.+|-+...+.
T Consensus       451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence            36778999999999999999999887431   11    26789999999999999 999999999999876554

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.01  E-value=0.017  Score=38.31  Aligned_cols=81  Identities=19%  Similarity=0.113  Sum_probs=69.3

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618          178 NKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR  257 (265)
Q Consensus       178 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  257 (265)
                      ......-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+..+..+...-.++.|+..+|+
T Consensus        14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            33344445588999999999988889999999999999999999999999999999998888878777788888888877


Q ss_pred             c
Q 024618          258 Y  258 (265)
Q Consensus       258 ~  258 (265)
                      .
T Consensus        94 p   94 (153)
T TIGR02561        94 A   94 (153)
T ss_pred             h
Confidence            4

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.98  E-value=0.034  Score=36.26  Aligned_cols=71  Identities=17%  Similarity=0.186  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHhhc---CcHHHHHHHHHHHh-cCCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhH
Q 024618          175 SLWNKLGATQANSV---QSADAILAYQRALD-LKPNY-VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW  245 (265)
Q Consensus       175 ~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  245 (265)
                      ...++++.++....   +..+.+..++..++ -.|.. -+..+.++..+.+.|+|+.++.+.+..++..|++.++.
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            34455555554432   23445555555554 22222 24455566666666666666666666666666655544

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.97  E-value=0.041  Score=34.98  Aligned_cols=95  Identities=14%  Similarity=0.135  Sum_probs=67.2

Q ss_pred             HhhcCcHHHHHHHHHHHHhcCCC------------hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhh
Q 024618           51 HAENDDDQQAIAAMMRAHEAEPT------------NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSD  118 (265)
Q Consensus        51 ~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  118 (265)
                      .+..|-|++|...+.++.+....            +..++..|+..+..+|+|++++..-                    
T Consensus        19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA--------------------   78 (144)
T PF12968_consen   19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA--------------------   78 (144)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH--------------------
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH--------------------
Confidence            45667888888888888875322            2457778888999999999998776                    


Q ss_pred             hhchHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618          119 SLYYADVARLFVEAARMSPEDADVH----IVLGVLYNLSRQYDKAIESFQTALKL  169 (265)
Q Consensus       119 ~~~~~~a~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~  169 (265)
                          +.|+.+|.+--+++.+....|    +..+..+...|+.++|+..|+.+-+.
T Consensus        79 ----~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   79 ----DRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             ----HHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                455567777777777765544    56677888899999999999887653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.96  E-value=0.0045  Score=49.58  Aligned_cols=90  Identities=18%  Similarity=0.152  Sum_probs=71.7

Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh---cCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHH
Q 024618          152 LSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANS---VQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESV  228 (265)
Q Consensus       152 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  228 (265)
                      ..+....++..|.++++..|.....+.+.+.++++.   |+.-.|+.-...++.++|....+++.|+.++..++++.+|+
T Consensus       386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal  465 (758)
T KOG1310|consen  386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL  465 (758)
T ss_pred             hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence            345567788888888888888888888888877764   45667778888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCCCC
Q 024618          229 RYYVRALAMNPKA  241 (265)
Q Consensus       229 ~~~~~a~~~~~~~  241 (265)
                      ++...+....|.+
T Consensus       466 ~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  466 SCHWALQMSFPTD  478 (758)
T ss_pred             hhHHHHhhcCchh
Confidence            8887777777743

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.12  Score=40.35  Aligned_cols=176  Identities=13%  Similarity=0.226  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCC
Q 024618           58 QQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSP  137 (265)
Q Consensus        58 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  137 (265)
                      +++++.-.+.+..+|+...+|...-.++.......          +..|         .......++-+.+...+++.+|
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~----------~~~~---------~ek~~~ld~eL~~~~~~L~~np  106 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA----------QLEP---------LEKQALLDEELKYVESALKVNP  106 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh----------cCCH---------HHHHHhhHHHHHHHHHHHHhCc
Confidence            45666777777778877666655433332211100          1111         1122235677788888889999


Q ss_pred             CCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc----CcHHHHHHHHHHHhcCCcchhhH
Q 024618          138 EDADVHIVLGVLYNLSR--QYDKAIESFQTALKLKPQDYSLWNKLGATQANSV----QSADAILAYQRALDLKPNYVRAW  211 (265)
Q Consensus       138 ~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~  211 (265)
                      +...+|.....++.+.+  ++..=+..++++++.+|.+..+|...=.+.....    ...+=+++..+++..++++..+|
T Consensus       107 ksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaW  186 (421)
T KOG0529|consen  107 KSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAW  186 (421)
T ss_pred             hhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHH
Confidence            99999999988888765  4678889999999999998877766555444332    34566788888888888888888


Q ss_pred             HHHHHHHHh------cCC------cHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 024618          212 ANMGISYAN------QGM------YEESVRYYVRALAMNPKADNAWQYLRISL  252 (265)
Q Consensus       212 ~~l~~~~~~------~g~------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  252 (265)
                      .....+...      .|+      ...-++.-..++-.+|++..+|++.-..+
T Consensus       187 hyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl  239 (421)
T KOG0529|consen  187 HYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL  239 (421)
T ss_pred             HHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence            887766652      231      23445566677777899888887744443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.94  E-value=0.0018  Score=46.03  Aligned_cols=61  Identities=26%  Similarity=0.346  Sum_probs=54.9

Q ss_pred             hhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024618          114 PELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY  174 (265)
Q Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  174 (265)
                      ......++.+.+.+.+.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3456778889999999999999999999999999999999999999999999999999874

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=96.90  E-value=0.11  Score=38.86  Aligned_cols=119  Identities=13%  Similarity=0.055  Sum_probs=63.3

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHH----------------HhhCCCCHHHHHHHHH-HHHhhcCcHHHHHHHHHH
Q 024618          138 EDADVHIVLGVLYNLSRQYDKAIESFQTA----------------LKLKPQDYSLWNKLGA-TQANSVQSADAILAYQRA  200 (265)
Q Consensus       138 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----------------~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~  200 (265)
                      .++..+..+|..+.+.|++.+|..+|-..                .+-.|.....+...+. -|...++...|...+..-
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f  167 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF  167 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            56788888888888888888888766321                1235566666666665 366678888888877666


Q ss_pred             Hhc----CCc----------chhhHHH--HHHHHHhcCC---cHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhC
Q 024618          201 LDL----KPN----------YVRAWAN--MGISYANQGM---YEESVRYYVRALAMNPKADNAWQYLRISLRYAG  256 (265)
Q Consensus       201 ~~~----~~~----------~~~~~~~--l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  256 (265)
                      ++.    +|.          ....+..  +-..-.+.++   +..=.+.|+..++.+|........+|..|+...
T Consensus       168 ~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~  242 (260)
T PF04190_consen  168 TSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ  242 (260)
T ss_dssp             HHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred             HHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence            554    332          1111111  1111222333   223334444555566777778888999988754

; PDB: 3LKU_E 2WPV_G.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.88  E-value=0.17  Score=44.75  Aligned_cols=101  Identities=19%  Similarity=0.100  Sum_probs=81.3

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCCh---HHHHHHHHHHhhc----C---cHHHHHHHHHHHHhcCCChHHHHhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENS---EGWRLLGIAHAEN----D---DDQQAIAAMMRAHEAEPTNLEVLLS   80 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----~---~~~~A~~~~~~~~~~~~~~~~~~~~   80 (265)
                      +....++.....|++|+..|+++....|...   ++.+..|.....+    |   .+++|+..|++... .|.-|--|..
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  557 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLG  557 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHh
Confidence            3445677888999999999999999988654   5777777776543    2   57777777776543 4666778888


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc
Q 024618           81 LGVSHTNELEQAAALKYLYGWLRHHPKYGTIA  112 (265)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  112 (265)
                      .|.+|.++|++++-++++.-+++..|..+.+.
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (932)
T PRK13184        558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEIS  589 (932)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence            99999999999999999999999999988765

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.87  E-value=0.0034  Score=46.84  Aligned_cols=77  Identities=13%  Similarity=0.209  Sum_probs=46.4

Q ss_pred             cCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024618          104 HHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIV-LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNK  179 (265)
Q Consensus       104 ~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  179 (265)
                      ..|+++..|   +......+.+.+--..+.++++.+|.+.+.|.. -+.-+...++++.+...+.+++..+|.+|..|..
T Consensus       102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence            344444444   333344555666666666677777777666665 3444556667777777777777777777666654


Q ss_pred             H
Q 024618          180 L  180 (265)
Q Consensus       180 l  180 (265)
                      .
T Consensus       182 y  182 (435)
T COG5191         182 Y  182 (435)
T ss_pred             H
Confidence            3

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.83  E-value=0.012  Score=34.31  Aligned_cols=61  Identities=18%  Similarity=0.272  Sum_probs=42.0

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH---HHHHHhhcCcHHHHHHHHHHHHhc
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRL---LGIAHAENDDDQQAIAAMMRAHEA   70 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~   70 (265)
                      .+..|..++...+.++|+..++++++..++.++-+..   +..+|...|++.+++.+..+-+++
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777778888888888888888877766654444   445567777777777766555443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=96.82  E-value=0.26  Score=42.01  Aligned_cols=214  Identities=16%  Similarity=0.086  Sum_probs=136.3

Q ss_pred             hHHHHHHHHHHHHhCCCC----hHHHHHHHHHHh-hcCcHHHHHHHHHHHHhcCCC--hH----HHHhhhhhhhhhhhhH
Q 024618           23 LSEAVLALEAEVLKNPEN----SEGWRLLGIAHA-ENDDDQQAIAAMMRAHEAEPT--NL----EVLLSLGVSHTNELEQ   91 (265)
Q Consensus        23 ~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~la~~~~~~~~~   91 (265)
                      ...|+.+++-+++..+-.    ..+.+.+|.+++ ...+++.|..++.+++.+...  ..    .+.+.++.++.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            345677888777433222    347788899887 789999999999999887643  22    3455678888888877


Q ss_pred             HHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhchHHHHHHHHHHHhcC--CCCHHH----HHHHHHHHHHccCH
Q 024618           92 AAALKYLYGWLRHHPKYGTIA---------PPELSDSLYYADVARLFVEAARMS--PEDADV----HIVLGVLYNLSRQY  156 (265)
Q Consensus        92 ~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~----~~~l~~~~~~~~~~  156 (265)
                      . |+..+++.++.........         .......+++..|++.++......  +.++.+    ....+.++...+..
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~  195 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP  195 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence            7 9999999998766633221         222223378999999999988765  344433    23345666778888


Q ss_pred             HHHHHHHHHHHhhCC------C----CHHHHHHHHH--HHHhhcCcHHHHHHHHHH---Hhc---CC---c---c-----
Q 024618          157 DKAIESFQTALKLKP------Q----DYSLWNKLGA--TQANSVQSADAILAYQRA---LDL---KP---N---Y-----  207 (265)
Q Consensus       157 ~~A~~~~~~~~~~~~------~----~~~~~~~l~~--~~~~~~~~~~A~~~~~~~---~~~---~~---~---~-----  207 (265)
                      +++++.++++.....      +    ...+|..+-.  +....|+++.+...+++.   +..   .+   .   +     
T Consensus       196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l  275 (608)
T PF10345_consen  196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL  275 (608)
T ss_pred             hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence            889988888754311      1    1334444444  344567766665544332   211   11   0   0     


Q ss_pred             ------------h-------------hhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          208 ------------V-------------RAWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       208 ------------~-------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                                  +             -++..-|.+....|..++|.+++.++++.
T Consensus       276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~  330 (608)
T PF10345_consen  276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQ  330 (608)
T ss_pred             ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHH
Confidence                        0             12334456666777777888888888763

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.82  E-value=0.12  Score=38.19  Aligned_cols=204  Identities=13%  Similarity=0.105  Sum_probs=122.1

Q ss_pred             hcCcHHHHHHHHHHHHhcCCChH----HHHhhhhhhhhhhhhHHHHHHHHHHHHhc-------CCCCCCCc--hhhhhhh
Q 024618           53 ENDDDQQAIAAMMRAHEAEPTNL----EVLLSLGVSHTNELEQAAALKYLYGWLRH-------HPKYGTIA--PPELSDS  119 (265)
Q Consensus        53 ~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~--~~~~~~~  119 (265)
                      ...+.++|+..|++++++.+...    .++-.+..++++++++++-...|.+.+..       +-....+.  .......
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            34589999999999999988753    46667778888888888888777766542       11111000  1111111


Q ss_pred             hchHHHHHHHHHHHhc--CCCCHHH----HHHHHHHHHHccCHHHHHHHHHHHHhhCCC------------CHHHHHHHH
Q 024618          120 LYYADVARLFVEAARM--SPEDADV----HIVLGVLYNLSRQYDKAIESFQTALKLKPQ------------DYSLWNKLG  181 (265)
Q Consensus       120 ~~~~~a~~~~~~~~~~--~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~  181 (265)
                      .+.+--...|+..+..  +..+...    -..+|.+++..++|.+-.+.+.+.-+....            -.+++..-.
T Consensus       119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI  198 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI  198 (440)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence            2222222223222211  1122222    346889999999888877777665443211            124555556


Q ss_pred             HHHHhhcCcHHHHHHHHHHHhcCCcchhh------HHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC-----chh--HHHH
Q 024618          182 ATQANSVQSADAILAYQRALDLKPNYVRA------WANMGISYANQGMYEESVRYYVRALAMNPKA-----DNA--WQYL  248 (265)
Q Consensus       182 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-----~~~--~~~l  248 (265)
                      ..|-.+++-.+-...|++++.+...-|..      .-.=|..+.+.|++++|-.-|-.+++...+.     ...  +.-|
T Consensus       199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL  278 (440)
T KOG1464|consen  199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL  278 (440)
T ss_pred             hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence            67888888888888999998775433222      1223566788899999998888888753322     222  3345


Q ss_pred             HHHHHHhC
Q 024618          249 RISLRYAG  256 (265)
Q Consensus       249 ~~~~~~~~  256 (265)
                      +..+.+.|
T Consensus       279 ANMLmkS~  286 (440)
T KOG1464|consen  279 ANMLMKSG  286 (440)
T ss_pred             HHHHHHcC
Confidence            66666554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.81  E-value=0.084  Score=36.21  Aligned_cols=157  Identities=8%  Similarity=0.020  Sum_probs=103.9

Q ss_pred             hhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHH
Q 024618           84 SHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPED--ADVHIVLGVLYNLSRQYDKAIE  161 (265)
Q Consensus        84 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~  161 (265)
                      -|+..+.-..+-..|..++++            ...+..++|+..|...-+..-..  .-+....+.+..+.|+...|+.
T Consensus        48 ~yw~~s~as~sgd~flaAL~l------------A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~  115 (221)
T COG4649          48 TYWQTSRASKSGDAFLAALKL------------AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVA  115 (221)
T ss_pred             ehhcccccccchHHHHHHHHH------------HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHH
Confidence            344444444555555555543            33445677777777776654333  3456777888999999999999


Q ss_pred             HHHHHHhhCCCCHH-----HHHHHHHHHHhhcCcHHHHHHHHHHHh-cCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618          162 SFQTALKLKPQDYS-----LWNKLGATQANSVQSADAILAYQRALD-LKPNYVRAWANMGISYANQGMYEESVRYYVRAL  235 (265)
Q Consensus       162 ~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  235 (265)
                      .|.++-...|. |.     +...-+.++...|-|+.-....+..-. .+|--..+.-.||..-++.|++..|..+|.+..
T Consensus       116 aFdeia~dt~~-P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia  194 (221)
T COG4649         116 AFDEIAADTSI-PQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA  194 (221)
T ss_pred             HHHHHhccCCC-cchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence            99998765442 32     344556677888988887766654321 233334566779999999999999999999887


Q ss_pred             hcCCCCchhHHHHHHHHHH
Q 024618          236 AMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~~  254 (265)
                      . +...+......+.+...
T Consensus       195 ~-Da~aprnirqRAq~mld  212 (221)
T COG4649         195 N-DAQAPRNIRQRAQIMLD  212 (221)
T ss_pred             c-cccCcHHHHHHHHHHHH
Confidence            6 44556655666655543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.81  E-value=0.042  Score=38.40  Aligned_cols=99  Identities=11%  Similarity=0.026  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc--ch----hh
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPN--YV----RA  210 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~  210 (265)
                      ..++..+|..|.+.|+.++|++.|.++.......   .+.+..+..+....+++.....+..++-..-..  +.    ..
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            3678899999999999999999999988754332   466778888889999999999998888665322  22    23


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhcC
Q 024618          211 WANMGISYANQGMYEESVRYYVRALAMN  238 (265)
Q Consensus       211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~  238 (265)
                      ...-|..+...++|.+|...|-.+..-.
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            3456777888999999999988776443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=0.25  Score=41.15  Aligned_cols=94  Identities=14%  Similarity=0.067  Sum_probs=78.6

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCCh------HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENS------EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVS   84 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   84 (265)
                      .+.|..+++..+|..+++.|...+..-|.+.      .....++.||..+.+.+.|.++++.|-+.+|.++-....+..+
T Consensus       358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~  437 (872)
T KOG4814|consen  358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS  437 (872)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            3567788889999999999999888777653      3566788899999999999999999999999998888888888


Q ss_pred             hhhhhhHHHHHHHHHHHHhc
Q 024618           85 HTNELEQAAALKYLYGWLRH  104 (265)
Q Consensus        85 ~~~~~~~~~A~~~~~~~~~~  104 (265)
                      ....+..++|+.+..+....
T Consensus       438 ~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  438 FLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHhcchHHHHHHHHHHHhh
Confidence            88888999999888776654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.71  E-value=0.19  Score=41.86  Aligned_cols=216  Identities=11%  Similarity=0.002  Sum_probs=110.7

Q ss_pred             CCcchhhhHHHHHcCChHHHHHHHHHHHHh--------------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC
Q 024618            7 HPNPLKEGQELFRKGLLSEAVLALEAEVLK--------------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP   72 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~   72 (265)
                      ..+|-.+|+.....=+++-|.+.|.++-..              ....|. -..++..+...|.+.+|.+.|.+.=..+.
T Consensus       585 ~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enR  663 (1081)
T KOG1538|consen  585 DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENR  663 (1081)
T ss_pred             cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhh
Confidence            344556666666666677777666554221              111122 23456666677777777777765311100


Q ss_pred             C----hHHHHhhhhhhhhhhhhHHHHHHHHHHHH--hcCCCCCCCchhhhhhhhchHHHHHHH----------HHHHhcC
Q 024618           73 T----NLEVLLSLGVSHTNELEQAAALKYLYGWL--RHHPKYGTIAPPELSDSLYYADVARLF----------VEAARMS  136 (265)
Q Consensus        73 ~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~----------~~~~~~~  136 (265)
                      .    ...-.+..+.-+...|..++-....++-.  ..+.+.+.+.+.++...|+.++|+...          +-+-+++
T Consensus       664 AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld  743 (1081)
T KOG1538|consen  664 ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD  743 (1081)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc
Confidence            0    00112223333444444333333332222  223334444477777788877776543          2223344


Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618          137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI  216 (265)
Q Consensus       137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  216 (265)
                      ..+.+.+..++..+.....+.-|.+.|.+.-..        ..+-.++...+++++|...-++.-+.-   +.+++-.|+
T Consensus       744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaq  812 (1081)
T KOG1538|consen  744 KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQ  812 (1081)
T ss_pred             hhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCcccc---ccccchHHH
Confidence            445555666666666666666666666554221        223445666777877776655432222   234555555


Q ss_pred             HHHhcCCcHHHHHHHHHH
Q 024618          217 SYANQGMYEESVRYYVRA  234 (265)
Q Consensus       217 ~~~~~g~~~~A~~~~~~a  234 (265)
                      .+....++++|.+.|.++
T Consensus       813 wLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  813 WLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             HhhhhhhHHHHHHHHHHh
Confidence            555555555555555443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.68  E-value=0.01  Score=47.66  Aligned_cols=100  Identities=14%  Similarity=0.076  Sum_probs=83.7

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhc---CcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEN---DDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      .|.-.+..+....|+..|.+++...|.....+.+.+.++++.   |+.-.|+.-...+++++|....+++.|+.++...+
T Consensus       380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~  459 (758)
T KOG1310|consen  380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT  459 (758)
T ss_pred             hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence            344444556678899999999999999999888888887764   56777888889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCc
Q 024618           90 EQAAALKYLYGWLRHHPKYGTIA  112 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~~~~  112 (265)
                      ++.+|+.+...+....|.+....
T Consensus       460 r~~eal~~~~alq~~~Ptd~a~~  482 (758)
T KOG1310|consen  460 RYLEALSCHWALQMSFPTDVARQ  482 (758)
T ss_pred             hHHHhhhhHHHHhhcCchhhhhh
Confidence            99999999988888888654433

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.68  E-value=0.085  Score=34.48  Aligned_cols=74  Identities=16%  Similarity=0.132  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHcc---CHHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHH
Q 024618          140 ADVHIVLGVLYNLSR---QYDKAIESFQTALK-LKPQD-YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWAN  213 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  213 (265)
                      ....++++.++....   +..+.+.+++..++ ..|.. -+..+.++..+.+.++|++++.+.+..++..|++..+...
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            566788888887655   45678888998886 44433 4678889999999999999999999999999998776543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.59  E-value=0.13  Score=35.36  Aligned_cols=106  Identities=14%  Similarity=0.009  Sum_probs=58.8

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCC--C--HHHHHHHHHHHHHccCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHhh
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPE--D--ADVHIVLGVLYNLSRQYDKAIESFQTAL-KLKPQDYSLWNKLGATQANS  187 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~  187 (265)
                      +.+....|+...|+..|..+-...|.  -  ..+...-+.++...|.|++.....+..- ..+|-...+.-.||..-.+.
T Consensus       101 at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka  180 (221)
T COG4649         101 ATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA  180 (221)
T ss_pred             HHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc
Confidence            34444445555555555554443321  1  1233444566677777777666655432 22344455666777777788


Q ss_pred             cCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618          188 VQSADAILAYQRALDLKPNYVRAWANMGISYA  219 (265)
Q Consensus       188 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  219 (265)
                      |++..|.+.|.+... +...|....+.+.+..
T Consensus       181 gd~a~A~~~F~qia~-Da~aprnirqRAq~ml  211 (221)
T COG4649         181 GDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML  211 (221)
T ss_pred             cchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence            888888888877665 4334444444444443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.53  E-value=0.028  Score=39.25  Aligned_cols=104  Identities=16%  Similarity=0.096  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhh
Q 024618           42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSD  118 (265)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  118 (265)
                      .++..+|..|.+.|+.++|++.|.++.+.....   .+.+..+..+....+++.....+..++-..-.....        
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d--------  108 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD--------  108 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch--------
Confidence            477889999999999999999999988765433   456777778888888888888877766543221100        


Q ss_pred             hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024618          119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK  170 (265)
Q Consensus       119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  170 (265)
                         ++              ........-|..++..++|.+|...|-.+....
T Consensus       109 ---~~--------------~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  109 ---WE--------------RRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             ---HH--------------HHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence               00              001234445666777888999888887765443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.42  E-value=0.0076  Score=30.52  Aligned_cols=29  Identities=34%  Similarity=0.539  Sum_probs=22.2

Q ss_pred             hhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          209 RAWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      .++.++|.+|..+|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45677888888888888888888888764

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.27  Score=40.42  Aligned_cols=128  Identities=19%  Similarity=0.094  Sum_probs=72.2

Q ss_pred             CcHHHHHHHHHHHHhcCCChHHHHhhh--hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHH-HHH
Q 024618           55 DDDQQAIAAMMRAHEAEPTNLEVLLSL--GVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADV-ARL  128 (265)
Q Consensus        55 ~~~~~A~~~~~~~~~~~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a-~~~  128 (265)
                      +.-.-++..+...+.++|.++..+...  +..+...+....+.-.....+..+|++....   +..+...|....+ ...
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            334446666777777777777764433  5556666676666666667777666665544   2222223333333 333


Q ss_pred             HHHHHhcCCCCHHHHHHH------HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024618          129 FVEAARMSPEDADVHIVL------GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGA  182 (265)
Q Consensus       129 ~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  182 (265)
                      .+.+....|++......+      +......|+..++.....++....|.++.+...+..
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~  184 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT  184 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence            333556666665544443      555556666666666666666666666544443333

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=96.31  E-value=0.23  Score=35.13  Aligned_cols=71  Identities=17%  Similarity=0.168  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc----chhhHHHHHHHHHhcCCcHHHH
Q 024618          157 DKAIESFQTALKL-KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN----YVRAWANMGISYANQGMYEESV  228 (265)
Q Consensus       157 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~  228 (265)
                      +.|...|-++-.. .-++++..+.+|..|. ..+.++++..+.+++++.+.    +++++..|+.++.++|+++.|-
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            4455544443221 1134556666665555 45566677777777666432    3566667777777777776664

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=96.24  E-value=0.14  Score=45.95  Aligned_cols=169  Identities=12%  Similarity=0.017  Sum_probs=116.6

Q ss_pred             HHHHHHHHhhcCcHHHHHH------HHHHH-HhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 024618           44 WRLLGIAHAENDDDQQAIA------AMMRA-HEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL  116 (265)
Q Consensus        44 ~~~l~~~~~~~~~~~~A~~------~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  116 (265)
                      ....|......|.+.+|.+      .+.+. -.+.|.....+..++.++...++.++|+..-.++.-..           
T Consensus       935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~----------- 1003 (1236)
T KOG1839|consen  935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIIS----------- 1003 (1236)
T ss_pred             hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeee-----------
Confidence            3455666666777777776      44422 23467888899999999999999999988776654432           


Q ss_pred             hhhhchHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhh
Q 024618          117 SDSLYYADVARLFVEAARMS-PEDADVHIVLGVLYNLSRQYDKAIESFQTALKL--------KPQDYSLWNKLGATQANS  187 (265)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~  187 (265)
                                   ++.+..+ |+....+.+++...+..++...|...+.++..+        .|.-.....+++.++...
T Consensus      1004 -------------eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v 1070 (1236)
T KOG1839|consen 1004 -------------ERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV 1070 (1236)
T ss_pred             -------------chhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH
Confidence                         2333332 344566777777777778888888888887764        344455667788888888


Q ss_pred             cCcHHHHHHHHHHHhcCCc--------chhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618          188 VQSADAILAYQRALDLKPN--------YVRAWANMGISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       188 ~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      ++++.|+++.+.|......        ....+..++..+..++++..|+...+....
T Consensus      1071 ~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1071 EEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence            8999999999988875322        234555677777777777777776665544

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=96.21  E-value=0.067  Score=47.80  Aligned_cols=171  Identities=20%  Similarity=0.146  Sum_probs=120.3

Q ss_pred             chhhhHHHHHcCChHHHHH------HHHHH-HHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--------CCCh
Q 024618           10 PLKEGQELFRKGLLSEAVL------ALEAE-VLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--------EPTN   74 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~   74 (265)
                      .+..|......|.+.+|..      ++... -...|+....+..++.++...|++++|+..-.++.-+        .|+.
T Consensus       935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen  935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred             hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence            4677888888888888877      45432 2345778889999999999999999999988877643        2344


Q ss_pred             HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 024618           75 LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR  154 (265)
Q Consensus        75 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  154 (265)
                      ...+..++......++...|+..+.++.....-.                       .-...|.-..+..+++.++...+
T Consensus      1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls-----------------------~ge~hP~~a~~~~nle~l~~~v~ 1071 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS-----------------------SGEDHPPTALSFINLELLLLGVE 1071 (1236)
T ss_pred             HHHhhHHHHHHHhccCccchhhhHHHHHHhhccc-----------------------cCCCCCchhhhhhHHHHHHhhHH
Confidence            5667777777776777767776666555431100                       00124555667778888888889


Q ss_pred             CHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618          155 QYDKAIESFQTALKLKP--------QDYSLWNKLGATQANSVQSADAILAYQRALDL  203 (265)
Q Consensus       155 ~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  203 (265)
                      +++.|+.+.+.+...+.        .....+..++..+..++++..|+...+....+
T Consensus      1072 e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1072 EADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence            99999999999987532        22455677778888888888777766655543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.17  E-value=0.013  Score=29.57  Aligned_cols=29  Identities=21%  Similarity=0.249  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618          175 SLWNKLGATQANSVQSADAILAYQRALDL  203 (265)
Q Consensus       175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  203 (265)
                      .++.++|.++..+|++++|+.++++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45677777888888888888887777754

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.16  E-value=0.64  Score=38.88  Aligned_cols=95  Identities=16%  Similarity=0.059  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHH
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG  215 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  215 (265)
                      ++.+-|.-+++..+|..+++.|...+...|.+      ......++.||....+.+.|.+++++|-+.+|.++-....+-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            34445566667777777777777777665544      344566777777777777777777777777777776666666


Q ss_pred             HHHHhcCCcHHHHHHHHHHHh
Q 024618          216 ISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       216 ~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      .+....|.-++|+....+...
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s  456 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKS  456 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHh
Confidence            667777777777777666554

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.12  E-value=0.077  Score=39.24  Aligned_cols=69  Identities=23%  Similarity=0.224  Sum_probs=54.8

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618          178 NKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ  246 (265)
Q Consensus       178 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  246 (265)
                      .++=..+...++++.|....++.+.++|.++.-+.-.|.+|.++|.+.-|++.+...++..|+++.+-.
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence            334446677788888888888888888888888888888888888888888888888888888766543

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.47  Score=37.29  Aligned_cols=103  Identities=17%  Similarity=0.156  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----C-CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc----CCcchh
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLK-----P-QDYSLWNKLGATQANSVQSADAILAYQRALDL----KPNYVR  209 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~  209 (265)
                      ...|+.+..++...|+...-...+...+...     . ......+.+-..|...+.|+.|-....+..--    +...+.
T Consensus       169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR  248 (493)
T KOG2581|consen  169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR  248 (493)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence            3567777777888888666666665554431     1 11344556667788888888888877765411    112345


Q ss_pred             hHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618          210 AWANMGISYANQGMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  242 (265)
                      ..+.+|.+..-+++|..|.+++-+|+...|.+.
T Consensus       249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            667789999999999999999999999998753

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.09  E-value=0.41  Score=38.97  Aligned_cols=81  Identities=9%  Similarity=-0.078  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh----HHHHhhhhhhhhhhhhHHHHHHHHH
Q 024618           24 SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN----LEVLLSLGVSHTNELEQAAALKYLY   99 (265)
Q Consensus        24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~   99 (265)
                      +...+.+.......|.++.-....+..+...|+.+.|+..++..++  +.-    .-.++.+|.++..+.+|..|...+.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3444555555667788877777788888888888888888888776  222    3356677888888888888888887


Q ss_pred             HHHhcCC
Q 024618          100 GWLRHHP  106 (265)
Q Consensus       100 ~~~~~~~  106 (265)
                      ...+.+.
T Consensus       328 ~L~desd  334 (546)
T KOG3783|consen  328 LLRDESD  334 (546)
T ss_pred             HHHhhhh
Confidence            7665543

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.94  E-value=0.072  Score=41.80  Aligned_cols=91  Identities=12%  Similarity=0.016  Sum_probs=71.9

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhC--------CCCh---H-------HHHHHHHHHhhcCcHHHHHHHHHHHHhcCC
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKN--------PENS---E-------GWRLLGIAHAENDDDQQAIAAMMRAHEAEP   72 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~---~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~   72 (265)
                      ++.|...+++++|..|..-|..+++..        |..+   +       +--.+..||+.+++.+-|+....+.+-++|
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP  259 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP  259 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence            345777788888888888787777642        1111   1       223588999999999999999999999999


Q ss_pred             ChHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 024618           73 TNLEVLLSLGVSHTNELEQAAALKYLYGW  101 (265)
Q Consensus        73 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~  101 (265)
                      ..+.-+...|.++..+.+|.+|...+..+
T Consensus       260 ~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  260 SYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987765443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.89  E-value=0.12  Score=38.25  Aligned_cols=73  Identities=16%  Similarity=-0.009  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHH
Q 024618          143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG  215 (265)
Q Consensus       143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  215 (265)
                      ..++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|+..++..++..|+++.+-...+
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence            3444567788999999999999999999999999999999999999999999999999999999876654433

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.85  E-value=0.085  Score=32.52  Aligned_cols=57  Identities=21%  Similarity=0.112  Sum_probs=39.8

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC
Q 024618           16 ELFRKGLLSEAVLALEAEVLKNPEN---------SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP   72 (265)
Q Consensus        16 ~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~   72 (265)
                      ...+.|+|.+|++.+.+.++.....         ..+...+|.++...|++++|+..+++++++..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3467788888888777776643221         23556677788888888888888888877643

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.78  E-value=0.049  Score=26.64  Aligned_cols=31  Identities=13%  Similarity=-0.041  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHH--HHHhcCC
Q 024618           42 EGWRLLGIAHAENDDDQQAIAAMM--RAHEAEP   72 (265)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~~   72 (265)
                      +.++.+|..+..+|++++|+..++  -+..++|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            345556666666666666666633  4444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.78  E-value=0.85  Score=37.12  Aligned_cols=84  Identities=15%  Similarity=-0.034  Sum_probs=49.9

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618          137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI  216 (265)
Q Consensus       137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  216 (265)
                      .+++..|..+|...+..|+++-|..+|+++-        -+..+..+|...|+.+.-.+..+.+......+     ..-.
T Consensus       344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n-----~af~  410 (443)
T PF04053_consen  344 LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERGDIN-----IAFQ  410 (443)
T ss_dssp             CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HH-----HHHH
T ss_pred             cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHccCHH-----HHHH
Confidence            3457789999999999999999998888753        23445566667777655555554444332221     1123


Q ss_pred             HHHhcCCcHHHHHHHHH
Q 024618          217 SYANQGMYEESVRYYVR  233 (265)
Q Consensus       217 ~~~~~g~~~~A~~~~~~  233 (265)
                      +++.+|+.++.++.+.+
T Consensus       411 ~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  411 AALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHHT-HHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            34445666666655544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.77  E-value=0.038  Score=27.01  Aligned_cols=30  Identities=17%  Similarity=0.466  Sum_probs=15.8

Q ss_pred             hHHHHHHHHHhcCCcHHHHHH--HHHHHhcCC
Q 024618          210 AWANMGISYANQGMYEESVRY--YVRALAMNP  239 (265)
Q Consensus       210 ~~~~l~~~~~~~g~~~~A~~~--~~~a~~~~~  239 (265)
                      .++.+|-.+..+|++++|+..  |+-+..++|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            445556666666666666666  334444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.74  E-value=0.37  Score=39.14  Aligned_cols=81  Identities=22%  Similarity=0.210  Sum_probs=53.4

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 024618          139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISY  218 (265)
Q Consensus       139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  218 (265)
                      ++...+.+   ..+.|+.+.|.+..++     .+++..|..+|.....+|+++-|.++|+++-        -+..+..+|
T Consensus       320 D~~~rFeL---Al~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy  383 (443)
T PF04053_consen  320 DPDHRFEL---ALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLY  383 (443)
T ss_dssp             -HHHHHHH---HHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHH
T ss_pred             ChHHHhHH---HHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHH
Confidence            35544444   4678999888776543     3578899999999999999999999999753        233455556


Q ss_pred             HhcCCcHHHHHHHHHHH
Q 024618          219 ANQGMYEESVRYYVRAL  235 (265)
Q Consensus       219 ~~~g~~~~A~~~~~~a~  235 (265)
                      .-.|+.+.=.+..+.+.
T Consensus       384 ~~~g~~~~L~kl~~~a~  400 (443)
T PF04053_consen  384 SSTGDREKLSKLAKIAE  400 (443)
T ss_dssp             HHCT-HHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHH
Confidence            66666544444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=95.74  E-value=0.66  Score=35.62  Aligned_cols=230  Identities=17%  Similarity=0.156  Sum_probs=138.7

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHh--CCCC--------hHHHHHHHHHHhhcCcHHHHHHHHH--------------
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLK--NPEN--------SEGWRLLGIAHAENDDDQQAIAAMM--------------   65 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~--------------   65 (265)
                      .+..++......+.++++..+..++..  .|.+        ......+|..+...|+..+-.....              
T Consensus         7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka   86 (411)
T KOG1463|consen    7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA   86 (411)
T ss_pred             HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence            367778888888899999999999874  2222        2366788999999988765333322              


Q ss_pred             -----HHHhcCCC---h------------------------HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCC--CCCC
Q 024618           66 -----RAHEAEPT---N------------------------LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPK--YGTI  111 (265)
Q Consensus        66 -----~~~~~~~~---~------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~  111 (265)
                           ..++..+.   .                        ...-..+...|...++|.+|+......+.--.+  +...
T Consensus        87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l  166 (411)
T KOG1463|consen   87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL  166 (411)
T ss_pred             HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence                 22222111   0                        012344667788888888888877666542111  1111


Q ss_pred             c-------hhhhhhhhchHHHHHHHHHHHhc-----CCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC---CCH
Q 024618          112 A-------PPELSDSLYYADVARLFVEAARM-----SPED--ADVHIVLGVLYNLSRQYDKAIESFQTALKLKP---QDY  174 (265)
Q Consensus       112 ~-------~~~~~~~~~~~~a~~~~~~~~~~-----~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~  174 (265)
                      +       ...+....+..+|...+..+-..     .|-.  ..+-..-|.++....+|..|..+|-++++-..   ++.
T Consensus       167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v  246 (411)
T KOG1463|consen  167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV  246 (411)
T ss_pred             eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence            1       56667777777777666555432     1111  12223335666677889999999988887422   122


Q ss_pred             HH---HHHHHHHHHhhcCcHH--HHHHHHHHHhcCCcchhhHHHHHHHHHh--cCCcHHHHHHHHHHHhcCC
Q 024618          175 SL---WNKLGATQANSVQSAD--AILAYQRALDLKPNYVRAWANMGISYAN--QGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       175 ~~---~~~l~~~~~~~~~~~~--A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~  239 (265)
                      .+   +-.+-.+-...+..++  ++-.-+.+++....+..+....+.++..  +.+|+.|+..|+.-+..+|
T Consensus       247 ~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~  318 (411)
T KOG1463|consen  247 KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP  318 (411)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence            33   2233333344455554  3333445566666667888888887764  4578888888888777655

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.70  E-value=0.16  Score=44.92  Aligned_cols=97  Identities=15%  Similarity=0.178  Sum_probs=77.7

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhh----c---CcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618          147 GVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANS----V---QSADAILAYQRALDLKPNYVRAWANMGI  216 (265)
Q Consensus       147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~----~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~  216 (265)
                      ..++...+.|+.|+..|+++....|..   .++.+..|.....+    |   .+++|+.-|++.- -.|.-|--|...|.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence            456778889999999999999988865   46778888776643    2   4677777777643 35566677888899


Q ss_pred             HHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618          217 SYANQGMYEESVRYYVRALAMNPKADNA  244 (265)
Q Consensus       217 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~  244 (265)
                      +|.++|++++-++++.-+++..|++|..
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        561 VYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            9999999999999999999999998754

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.67  E-value=1  Score=37.25  Aligned_cols=170  Identities=15%  Similarity=0.090  Sum_probs=95.5

Q ss_pred             cCcHHHHHHHHHHHHhc------------CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh-----cCCCCCCCchhhh
Q 024618           54 NDDDQQAIAAMMRAHEA------------EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR-----HHPKYGTIAPPEL  116 (265)
Q Consensus        54 ~~~~~~A~~~~~~~~~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~~  116 (265)
                      ...|++|...|.-+...            .|-+.+.+..++.+...+|+.+-|....++++=     ..|......+.+-
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            45678888888877764            344568889999999999998888877766652     1222111111000


Q ss_pred             hhhhchHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-hhcCcH
Q 024618          117 SDSLYYADVARLFVEAARMSPEDADV---HIVLGVLYNLSRQYDKAIESFQTALKLKPQ-DYSLWNKLGATQA-NSVQSA  191 (265)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~~~~~  191 (265)
                      +.-               ..|.+-..   .+..-..+.+.|-+..|.++++-+++++|. +|.....+...|. +..+|.
T Consensus       331 L~y---------------~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYq  395 (665)
T KOG2422|consen  331 LPY---------------IYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQ  395 (665)
T ss_pred             Ccc---------------cchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHH
Confidence            000               01222222   222334455677788888888888888887 6655554444433 445555


Q ss_pred             HHHHHHHHHHh-----cCCcchhhHHHHHHHHHhcCC---cHHHHHHHHHHHhcCC
Q 024618          192 DAILAYQRALD-----LKPNYVRAWANMGISYANQGM---YEESVRYYVRALAMNP  239 (265)
Q Consensus       192 ~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~  239 (265)
                      =-++.++..-.     .-|+. ..-..++..|.....   -+.|...+.+|+.+.|
T Consensus       396 wiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  396 WIIELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             HHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence            55555554422     12332 122234555554444   4567777777777766

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.61  E-value=0.13  Score=40.42  Aligned_cols=58  Identities=21%  Similarity=0.235  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618          177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA  234 (265)
Q Consensus       177 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  234 (265)
                      -..+..||..+++.+-|+....+.+..+|....-+...+.++..+.+|.+|-..+.-+
T Consensus       231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456778888888888888888888888888777777888888888888877665544

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.57  E-value=0.075  Score=32.77  Aligned_cols=53  Identities=17%  Similarity=0.189  Sum_probs=30.7

Q ss_pred             HHccCHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618          151 NLSRQYDKAIESFQTALKLKPQD---------YSLWNKLGATQANSVQSADAILAYQRALDL  203 (265)
Q Consensus       151 ~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  203 (265)
                      .+.|++.+|++.+.+.+......         ..+...+|.++...|++++|+..+++++.+
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45677777777777666542211         233455555566666666666666666554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.56  E-value=0.23  Score=41.47  Aligned_cols=230  Identities=15%  Similarity=0.059  Sum_probs=116.6

Q ss_pred             hHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--------------CCChHHHHh
Q 024618           14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--------------EPTNLEVLL   79 (265)
Q Consensus        14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------~~~~~~~~~   79 (265)
                      -..++..|.+++|...---.+     -..-|..++......=+++-|.+.|.++-.+              ....|. -.
T Consensus       563 m~q~Ieag~f~ea~~iaclgV-----v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~i  636 (1081)
T KOG1538|consen  563 MYQYIERGLFKEAYQIACLGV-----TDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DL  636 (1081)
T ss_pred             chhhhhccchhhhhcccccce-----ecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HH
Confidence            345677787777654321111     1123666676666666777777777766432              111122 24


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHH------HhcCCCCCCCc-hhhhhhhhchHHHHHHHHHHHh--cCCCCHHHHHHHHHHH
Q 024618           80 SLGVSHTNELEQAAALKYLYGW------LRHHPKYGTIA-PPELSDSLYYADVARLFVEAAR--MSPEDADVHIVLGVLY  150 (265)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~  150 (265)
                      .+|.++...|++.+|.+.|.+.      ++...+...+- ++-++..|..++-..+.++-..  .+-+.+.   .-+.++
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmL  713 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEML  713 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHh
Confidence            4667777788888888877542      11111100000 2222222222222222222111  1111111   235566


Q ss_pred             HHccCHHHHHHHHH----------HHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618          151 NLSRQYDKAIESFQ----------TALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN  220 (265)
Q Consensus       151 ~~~~~~~~A~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  220 (265)
                      ...|+.++|+...-          -+-+++....+.+..++..+.....+.-|.+.|.+.=.        ...+.+.+..
T Consensus       714 iSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve  785 (1081)
T KOG1538|consen  714 ISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVE  785 (1081)
T ss_pred             hcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheee
Confidence            77777777765432          12223334445555566666666666666666665321        2235566777


Q ss_pred             cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618          221 QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       221 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      .+++.+|....++.-+.-|   +++.-.|+-+....++++|.+
T Consensus       786 ~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqk  825 (1081)
T KOG1538|consen  786 TQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQK  825 (1081)
T ss_pred             cccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHH
Confidence            8899999887766544433   344455555555555555543

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=95.55  E-value=1.1  Score=36.67  Aligned_cols=75  Identities=13%  Similarity=0.007  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618           26 AVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR  103 (265)
Q Consensus        26 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  103 (265)
                      ...++.+++... ++..+++.++.+|... ..++-...+++.++.+-++...-..++..|.. ++...+..+|.+++.
T Consensus        85 veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y  159 (711)
T COG1747          85 VEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALY  159 (711)
T ss_pred             HHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence            334445554433 3455666777777666 44555666777777766666666666665554 666666667766654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=95.49  E-value=0.024  Score=25.36  Aligned_cols=22  Identities=23%  Similarity=0.202  Sum_probs=11.4

Q ss_pred             hHHHHHHHHHhcCCcHHHHHHH
Q 024618          210 AWANMGISYANQGMYEESVRYY  231 (265)
Q Consensus       210 ~~~~l~~~~~~~g~~~~A~~~~  231 (265)
                      +...+|.++...|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3444555555555555555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.47  E-value=0.16  Score=38.08  Aligned_cols=63  Identities=19%  Similarity=0.190  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALD  202 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  202 (265)
                      ..++..++..+...|+++.++..+++.+..+|-+-..|..+-..|...|+...|+..|++.-+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            345666777777777777777777777777777777777777777777777777777776654

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.34  E-value=0.85  Score=34.25  Aligned_cols=205  Identities=12%  Similarity=0.080  Sum_probs=123.3

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCC--------CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNP--------ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLL   79 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   79 (265)
                      +..+..|+...+.+++++|+..|.+++....        +.......++.+|...|++..-.......-       +++.
T Consensus         4 ~~sle~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr-------e~m~   76 (421)
T COG5159           4 KSSLELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR-------EAME   76 (421)
T ss_pred             cchHHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH-------HHHH
Confidence            3448889999999999999999999987632        123367788999999998876444433221       1111


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc
Q 024618           80 SLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPED------ADVHIVLGVLYNLS  153 (265)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~  153 (265)
                      ..+        -.+..+..+..++..|..+..+          +.-+..+...++.....      ...-..+..++++.
T Consensus        77 ~ft--------k~k~~KiirtLiekf~~~~dsl----------~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~  138 (421)
T COG5159          77 DFT--------KPKITKIIRTLIEKFPYSSDSL----------EDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKT  138 (421)
T ss_pred             Hhc--------chhHHHHHHHHHHhcCCCCccH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            111        0112233344444444433322          22222222222221111      12334567788899


Q ss_pred             cCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc-----CCcch--hhHHHHHHHHHh
Q 024618          154 RQYDKAIESFQTALKL------KPQDYSLWNKLGATQANSVQSADAILAYQRALDL-----KPNYV--RAWANMGISYAN  220 (265)
Q Consensus       154 ~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~--~~~~~l~~~~~~  220 (265)
                      |+|.+|+......+..      .|+-..++..-..+|....+..++...+..+-..     .|...  ..-..-|..+..
T Consensus       139 ~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcd  218 (421)
T COG5159         139 GKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCD  218 (421)
T ss_pred             ccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeec
Confidence            9999999888776542      2344567777788888888888887777665443     23222  222334556666


Q ss_pred             cCCcHHHHHHHHHHHhc
Q 024618          221 QGMYEESVRYYVRALAM  237 (265)
Q Consensus       221 ~g~~~~A~~~~~~a~~~  237 (265)
                      -.+|..|..+|-.+++-
T Consensus       219 d~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         219 DRDYKTASSYFIEALEG  235 (421)
T ss_pred             cccchhHHHHHHHHHhc
Confidence            77888888888888764

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.28  E-value=0.1  Score=39.41  Aligned_cols=62  Identities=21%  Similarity=0.347  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618          159 AIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN  220 (265)
Q Consensus       159 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  220 (265)
                      |..+|.+|..+.|.+...++.+|.+....|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67788888888888888888888888888888888888888886655556777777777766

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=95.18  E-value=0.039  Score=24.66  Aligned_cols=22  Identities=18%  Similarity=0.078  Sum_probs=11.1

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHH
Q 024618           43 GWRLLGIAHAENDDDQQAIAAM   64 (265)
Q Consensus        43 ~~~~l~~~~~~~~~~~~A~~~~   64 (265)
                      +.+.+|.++...|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3444555555555555555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.01  E-value=0.062  Score=26.64  Aligned_cols=29  Identities=17%  Similarity=0.354  Sum_probs=21.0

Q ss_pred             hhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          209 RAWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      .++..+|.+-...++|++|+.-|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35666777777777777777777777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK11619 lytic murein transglycosylase; Provisional

Probab=94.92  E-value=2.2  Score=36.71  Aligned_cols=32  Identities=13%  Similarity=-0.065  Sum_probs=19.7

Q ss_pred             CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618           72 PTNLEVLLSLGVSHTNELEQAAALKYLYGWLR  103 (265)
Q Consensus        72 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  103 (265)
                      |.+....+..+......|+.++|.....++..
T Consensus       126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~  157 (644)
T PRK11619        126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWL  157 (644)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            55566666666666677776666655555443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.89  E-value=0.4  Score=28.12  Aligned_cols=46  Identities=11%  Similarity=0.144  Sum_probs=20.3

Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHH---HHHHhhcCcHHHHHH
Q 024618          151 NLSRQYDKAIESFQTALKLKPQDYSLWNKLG---ATQANSVQSADAILA  196 (265)
Q Consensus       151 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~  196 (265)
                      +..++.++|+..++++++..++.+.-+..+|   .++...|++.+++.+
T Consensus        17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555554444433333322   234444444444443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.85  E-value=1.5  Score=34.61  Aligned_cols=100  Identities=18%  Similarity=0.354  Sum_probs=81.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC--cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC----CcHHHH
Q 024618          155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ--SADAILAYQRALDLKPNYVRAWANMGISYANQG----MYEESV  228 (265)
Q Consensus       155 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~  228 (265)
                      -.++-+.+...+++.+|++..+|+....++.+.+.  +..=++.++++++.+|.+..+|...=.+.....    ...+=+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            46677888899999999999999999999987764  577889999999999999888866544444332    356778


Q ss_pred             HHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618          229 RYYVRALAMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       229 ~~~~~a~~~~~~~~~~~~~l~~~~~~  254 (265)
                      ++..+++..++.+-.+|.+...++..
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~~  195 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLST  195 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHHH
Confidence            89999999999999999887777653

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.83  E-value=0.19  Score=38.05  Aligned_cols=62  Identities=18%  Similarity=0.154  Sum_probs=52.6

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024618          125 VARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN  186 (265)
Q Consensus       125 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  186 (265)
                      |..+|.++..+.|++...+..+|.+....|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999997655567888888888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.65  E-value=1.4  Score=33.24  Aligned_cols=79  Identities=18%  Similarity=0.196  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618          156 YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL  235 (265)
Q Consensus       156 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  235 (265)
                      +..=+...+++++.  ....++..++..+...|+++.++..+++.+..+|-+...|..+-..|...|+...|+..|++.-
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            44444444444432  3356788889999999999999999999999999999999999999999999999999999886


Q ss_pred             h
Q 024618          236 A  236 (265)
Q Consensus       236 ~  236 (265)
                      +
T Consensus       215 ~  215 (280)
T COG3629         215 K  215 (280)
T ss_pred             H
Confidence            6

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.56  E-value=0.089  Score=26.08  Aligned_cols=29  Identities=24%  Similarity=0.479  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618          175 SLWNKLGATQANSVQSADAILAYQRALDL  203 (265)
Q Consensus       175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  203 (265)
                      +++..+|.+-...++|++|+.-|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35667777777777777777777777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=94.41  E-value=0.28  Score=36.74  Aligned_cols=59  Identities=25%  Similarity=0.233  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618          176 LWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA  234 (265)
Q Consensus       176 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  234 (265)
                      .+...+..|...|.+.+|++..++++..+|-+...+..+-.++..+|+--.+++.|++.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            34445566677777777777777777777777777777777777777766666666654

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=94.27  E-value=5.9  Score=38.85  Aligned_cols=53  Identities=11%  Similarity=-0.046  Sum_probs=27.6

Q ss_pred             hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccc
Q 024618          208 VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRG  262 (265)
Q Consensus       208 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  262 (265)
                      .+.|...|++....|+++.|..+.-.|.+..  -+.+....|..+...|+...|+
T Consensus      1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence            3455555555555555555555555555443  2344445555555555544443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.71  E-value=0.46  Score=35.66  Aligned_cols=55  Identities=20%  Similarity=0.247  Sum_probs=41.5

Q ss_pred             hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618          209 RAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      ..+...+..|...|.+.+|+.+.+++++++|-+...+..+..++..+|+--.+++
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~k  334 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIK  334 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhh
Confidence            3445566777788888888888888888888888888888888888887655544

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=93.69  E-value=0.3  Score=22.65  Aligned_cols=29  Identities=24%  Similarity=0.245  Sum_probs=17.0

Q ss_pred             CChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 024618           21 GLLSEAVLALEAEVLKNPENSEGWRLLGI   49 (265)
Q Consensus        21 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   49 (265)
                      |+.+.+..+|++++...|.++..|...+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            34556666666666666666666655443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=93.68  E-value=0.97  Score=32.56  Aligned_cols=62  Identities=21%  Similarity=0.218  Sum_probs=55.4

Q ss_pred             hHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH
Q 024618           14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL   75 (265)
Q Consensus        14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~   75 (265)
                      ...+++.+...+|+...+.-++..|.+......+-..+.-.|+|++|..-++-+-.+.|+..
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            45678889999999999999999999999888888999999999999999999999988763

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=93.66  E-value=0.29  Score=22.72  Aligned_cols=25  Identities=28%  Similarity=0.534  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHH
Q 024618          156 YDKAIESFQTALKLKPQDYSLWNKL  180 (265)
Q Consensus       156 ~~~A~~~~~~~~~~~~~~~~~~~~l  180 (265)
                      .+.+...|++++...|.++..|...
T Consensus         3 ~~~~r~i~e~~l~~~~~~~~~W~~y   27 (33)
T smart00386        3 IERARKIYERALEKFPKSVELWLKY   27 (33)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHH
Confidence            3444444444444444444444433

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.48  E-value=2.5  Score=31.91  Aligned_cols=126  Identities=12%  Similarity=0.022  Sum_probs=78.8

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCC-C-----ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHHH
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNP-E-----NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEVL   78 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~   78 (265)
                      |..+..---...-++-++.+++.++... +     -.+++.++|..|.+.++.+.+.+...+.++..-..      .-.-
T Consensus        79 fD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~k  158 (412)
T COG5187          79 FDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCK  158 (412)
T ss_pred             hhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHH
Confidence            3444444344445566666655554322 2     24588888888988888888888887776643221      2244


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc------hhhhhhhhchHHHHHHHHHHHhcC
Q 024618           79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA------PPELSDSLYYADVARLFVEAARMS  136 (265)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~  136 (265)
                      ..+|.+|..+.-.++.++.....++...+...-.      |...+...++.+|..++...+...
T Consensus       159 iRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF  222 (412)
T COG5187         159 IRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF  222 (412)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence            5667777777777777777777777665543221      556666677777777777666544

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.40  E-value=2  Score=30.54  Aligned_cols=75  Identities=11%  Similarity=0.124  Sum_probs=52.9

Q ss_pred             hhcCcHHHHHHHHHHHhcC-CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC----CchhHHHHHHHHHHhCCccc
Q 024618          186 NSVQSADAILAYQRALDLK-PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK----ADNAWQYLRISLRYAGRYPN  260 (265)
Q Consensus       186 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~  260 (265)
                      .+..-++|.+.|-++-... -++++..+.+|..|. ..+.++|+..+.+++++.+.    +++.+..|+.++.++|+++.
T Consensus       118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~  196 (203)
T PF11207_consen  118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ  196 (203)
T ss_pred             hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence            3334567777776553321 135677777877776 55678889999888887544    36788888999999888887


Q ss_pred             c
Q 024618          261 R  261 (265)
Q Consensus       261 A  261 (265)
                      |
T Consensus       197 A  197 (203)
T PF11207_consen  197 A  197 (203)
T ss_pred             h
Confidence            6

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=93.23  E-value=3.1  Score=32.15  Aligned_cols=56  Identities=20%  Similarity=0.076  Sum_probs=36.0

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA   70 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~   70 (265)
                      .-+...+..+..+-|+.-..+++++|+...++..++.-  ...-..+|...++++++.
T Consensus       190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka  245 (556)
T KOG3807|consen  190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKA  245 (556)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHH
Confidence            34445566667777777777888888877777776653  223355666666666653

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=93.20  E-value=0.24  Score=25.49  Aligned_cols=25  Identities=24%  Similarity=0.163  Sum_probs=17.0

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHH
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVL   35 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~   35 (265)
                      +.+|..|+..|+.+.|...+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4566677777777777777777664

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=92.89  E-value=3.5  Score=31.88  Aligned_cols=183  Identities=16%  Similarity=0.041  Sum_probs=121.7

Q ss_pred             cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc----hhhhhhhhchHHHHHHHHH
Q 024618           56 DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA----PPELSDSLYYADVARLFVE  131 (265)
Q Consensus        56 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~~~  131 (265)
                      --++|+..-.-...+-|..|+++-.++.+.+...+.         .-..+++-..+.    -......+-.+++...+.+
T Consensus       211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~---------~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~r  281 (415)
T COG4941         211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRR---------PARFDADGEPVLLEDQDRSLWDRALIDEGLALLDR  281 (415)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhh---------hhccCCCCCeeeccccchhhhhHHHHHHHHHHHHH
Confidence            356888888888888999999888777666543221         111222211111    3344555667888888988


Q ss_pred             HHhcC-CCCHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc--
Q 024618          132 AARMS-PEDADVHIVLGVLYNL-----SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL--  203 (265)
Q Consensus       132 ~~~~~-~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--  203 (265)
                      ++... |.-....-.++.++..     .-+|..-..+|.-.....|+ |.+-.+.+....+..-...++...+-....  
T Consensus       282 A~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~  360 (415)
T COG4941         282 ALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPR  360 (415)
T ss_pred             HHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccc
Confidence            88764 3333344444444433     34677777777777777665 666677777777777788888877766543  


Q ss_pred             CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHH
Q 024618          204 KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL  248 (265)
Q Consensus       204 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l  248 (265)
                      -......+...|..+.++|+.++|...|++++.+.++..+..+..
T Consensus       361 L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~  405 (415)
T COG4941         361 LDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR  405 (415)
T ss_pred             cccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence            123345666789999999999999999999999988876554433

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=92.80  E-value=0.2  Score=38.44  Aligned_cols=107  Identities=18%  Similarity=0.187  Sum_probs=79.1

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCC-------------------CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618          147 GVLYNLSRQYDKAIESFQTALKLKP-------------------QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY  207 (265)
Q Consensus       147 ~~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  207 (265)
                      +.-....++++.|..-+.+++..-.                   .-.....+++.+-.+.+.+..|+.....++..+++.
T Consensus       229 ~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~  308 (372)
T KOG0546|consen  229 GNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSK  308 (372)
T ss_pred             chhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhh
Confidence            3445566667666666666654211                   112345567778888889999888888888888888


Q ss_pred             hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024618          208 VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLR  253 (265)
Q Consensus       208 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  253 (265)
                      ..+++..+..+....++++|++.++.+....|++......+..+-.
T Consensus       309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~  354 (372)
T KOG0546|consen  309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ  354 (372)
T ss_pred             CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence            8999999999999999999999999999999998766555544433

>PF12854 PPR_1: PPR repeat

Probab=92.78  E-value=0.39  Score=23.02  Aligned_cols=26  Identities=23%  Similarity=0.097  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQT  165 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~  165 (265)
                      ...|..+...+.+.|+.++|.+.+++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            66777888888888888888888775

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=92.62  E-value=0.32  Score=38.68  Aligned_cols=61  Identities=20%  Similarity=0.109  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALK--------LKPQDYSLWNKLGATQANSVQSADAILAYQRALD  202 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  202 (265)
                      ....+.+++.-+|||..|++.++-.--        ..+-...+++.+|-+|+.+++|.+|++.|..++.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566788889999999988765311        1122356788899999999999999999998774

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=92.42  E-value=0.4  Score=24.68  Aligned_cols=26  Identities=23%  Similarity=-0.001  Sum_probs=21.4

Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618           45 RLLGIAHAENDDDQQAIAAMMRAHEA   70 (265)
Q Consensus        45 ~~l~~~~~~~~~~~~A~~~~~~~~~~   70 (265)
                      +.+|.+|...|+.+.|.+.++.++..
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            56788888888888888888888853

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF12854 PPR_1: PPR repeat

Probab=92.32  E-value=0.46  Score=22.77  Aligned_cols=26  Identities=12%  Similarity=0.115  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHhhcCcHHHHHHHHH
Q 024618          174 YSLWNKLGATQANSVQSADAILAYQR  199 (265)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~A~~~~~~  199 (265)
                      ...|..+...+.+.|+.++|.+.|++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            34555555556666666666555543

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=92.31  E-value=0.48  Score=31.67  Aligned_cols=53  Identities=17%  Similarity=-0.070  Sum_probs=36.0

Q ss_pred             ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHH
Q 024618           40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQA   92 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   92 (265)
                      ..+.....+...+..|++.-|.++.+.++..+|++..+....+.++..+|.-.
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            34556666677777788888888888888888888777777777777776543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.15  E-value=6  Score=34.60  Aligned_cols=52  Identities=12%  Similarity=0.113  Sum_probs=30.1

Q ss_pred             HHHHHhhcCcHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618          181 GATQANSVQSADAILAYQRALDLKPNY-VRAWANMGISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       181 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      -.++...++|++|++++..   +.|+. .......|..+... .+++-...+-+.+.
T Consensus       497 ~ille~~~ny~eAl~yi~s---lp~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t  549 (933)
T KOG2114|consen  497 DILLEDLHNYEEALRYISS---LPISELLRTLNKYGKILLEH-DPEETMKILIELIT  549 (933)
T ss_pred             HHHHHHhcCHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHh
Confidence            3456677888888888774   33333 24455567766654 34555555544443

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=92.00  E-value=7.9  Score=33.85  Aligned_cols=206  Identities=11%  Similarity=-0.007  Sum_probs=115.7

Q ss_pred             HHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh-hhhhHHHHHHHHHHHHhcCCCCCC
Q 024618           32 AEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT-NELEQAAALKYLYGWLRHHPKYGT  110 (265)
Q Consensus        32 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~  110 (265)
                      +.+...|.-...|..+-......|+.-.-...+++++.-.+.+...|...+...- .++-.+.+...+.+++...|-...
T Consensus       303 ~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgd  382 (881)
T KOG0128|consen  303 RLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGD  382 (881)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHH
Confidence            3334444445566677777788898888888889998888888888877765443 233334444555556666665555


Q ss_pred             CchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------------ccCHHHHHHHHHHHHhh-CCCCHH
Q 024618          111 IAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL--------------SRQYDKAIESFQTALKL-KPQDYS  175 (265)
Q Consensus       111 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~A~~~~~~~~~~-~~~~~~  175 (265)
                      .+...+....+..+-...+...+..+-+....+......+.+              ...+..|...|...... ......
T Consensus       383 L~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~  462 (881)
T KOG0128|consen  383 LWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTE  462 (881)
T ss_pred             HHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            553333333333222222222222221111111111111111              12233444444443332 112234


Q ss_pred             HHHHHHHHHH-hhcCcHHHHHHHHHHHhcCCcchh-hHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          176 LWNKLGATQA-NSVQSADAILAYQRALDLKPNYVR-AWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       176 ~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      .+...|.+.. .+++.+.+...++..+........ .|+.....-...|+...+...+++++..
T Consensus       463 ~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~  526 (881)
T KOG0128|consen  463 VLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ  526 (881)
T ss_pred             HHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence            4555555544 457788888888877766555544 7777777888889999999988888764

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.81  E-value=6.8  Score=32.74  Aligned_cols=50  Identities=12%  Similarity=0.043  Sum_probs=37.8

Q ss_pred             cCChHHHHHHHHHHHHh------------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618           20 KGLLSEAVLALEAEVLK------------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE   69 (265)
Q Consensus        20 ~~~~~~A~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~   69 (265)
                      ...|++|...|.-++..            .|.+.+.+..++.+...+|+.+-|.....+++=
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly  312 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY  312 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            34567777777666543            366778999999999999999888777777753

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=91.79  E-value=5.7  Score=31.80  Aligned_cols=60  Identities=18%  Similarity=0.223  Sum_probs=41.9

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChH--HHHH--HHHHHhhcCcHHHHHHHHHHHHhc
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSE--GWRL--LGIAHAENDDDQQAIAAMMRAHEA   70 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~--l~~~~~~~~~~~~A~~~~~~~~~~   70 (265)
                      ...+..++..++|..|..++..+...-|....  .+..  .|..++..-++.+|.+.++..+..
T Consensus       135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            45677888888888888888888775343333  2223  344567778888888888887664

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=91.77  E-value=5  Score=31.08  Aligned_cols=191  Identities=12%  Similarity=0.036  Sum_probs=101.5

Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHH
Q 024618           46 LLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADV  125 (265)
Q Consensus        46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  125 (265)
                      .+-...++..+..+-++....+++++|....++..++.-  ...-..+|.+.++++++........ .+.....|..   
T Consensus       189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~-sqq~qh~~~~---  262 (556)
T KOG3807|consen  189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQ-SQQCQHQSPQ---  262 (556)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhh-HHHHhhhccc---
Confidence            344455666677788888899999999999998888753  2334566777777777643221100 0000000110   


Q ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618          126 ARLFVEAARMSPE-DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD--YSLWNKLGATQANSVQSADAILAYQRALD  202 (265)
Q Consensus       126 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  202 (265)
                         .+...+.+.+ ...+...++.+..++|+..+|++.++...+..|-.  ..++-++...+....-|.+....+-+--+
T Consensus       263 ---~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd  339 (556)
T KOG3807|consen  263 ---HEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD  339 (556)
T ss_pred             ---hhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence               1111111111 12345678889999999999999999988776632  12334444444444433332222222111


Q ss_pred             c-CCcchhhHHHHH-------------HHHHhcCC---cHHHHHHHHHHHhcCCCCchhH
Q 024618          203 L-KPNYVRAWANMG-------------ISYANQGM---YEESVRYYVRALAMNPKADNAW  245 (265)
Q Consensus       203 ~-~~~~~~~~~~l~-------------~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~  245 (265)
                      + -|..+...+.-+             ..-.+.|-   -..|++...++++.+|.-+..+
T Consensus       340 islPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYL  399 (556)
T KOG3807|consen  340 ISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYL  399 (556)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHH
Confidence            1 122221111111             11112221   2358888999999999766543

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=91.36  E-value=9.4  Score=33.42  Aligned_cols=147  Identities=16%  Similarity=0.020  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh---hhhhHHHHHHHHH
Q 024618           23 LSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT---NELEQAAALKYLY   99 (265)
Q Consensus        23 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~   99 (265)
                      -+.=+.-++.-+..++.+......|..++...|++++-...-..+.++.|..+..|.....-..   ..++..++...|+
T Consensus        95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e  174 (881)
T KOG0128|consen   95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE  174 (881)
T ss_pred             chhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence            3344445555555666666666677777777777777666666666677777666655443322   2245566666666


Q ss_pred             HHHhcCCCCCCCc---------hhhhhhhhchHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHccCHHHHHHHH
Q 024618          100 GWLRHHPKYGTIA---------PPELSDSLYYADVARLFVEAARMSPE-------DADVHIVLGVLYNLSRQYDKAIESF  163 (265)
Q Consensus       100 ~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~  163 (265)
                      +++......+.+.         +......++++.....|.+++..-..       ....+...-..+...-..++-+.++
T Consensus       175 kal~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~  254 (881)
T KOG0128|consen  175 KALGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALF  254 (881)
T ss_pred             HHhcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            6665433222111         22234445566666666666653211       1223333334444444445555555


Q ss_pred             HHHHhh
Q 024618          164 QTALKL  169 (265)
Q Consensus       164 ~~~~~~  169 (265)
                      ...+..
T Consensus       255 ~~el~~  260 (881)
T KOG0128|consen  255 VRELKQ  260 (881)
T ss_pred             HHHHhc
Confidence            555543

>PF13041 PPR_2: PPR repeat family

Probab=91.30  E-value=1.2  Score=23.42  Aligned_cols=28  Identities=14%  Similarity=0.387  Sum_probs=14.5

Q ss_pred             hhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618          209 RAWANMGISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      ..|..+-..+.+.|++++|.+.|++..+
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            3444455555555555555555555544

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=91.20  E-value=4.9  Score=29.94  Aligned_cols=59  Identities=8%  Similarity=-0.096  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHH
Q 024618          175 SLWNKLGATQANSVQSADAILAYQRALDLKPNY------VRAWANMGISYANQGMYEESVRYYVR  233 (265)
Q Consensus       175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~  233 (265)
                      .+...+|..|...|++++|+++|+.+.......      ..+...+..|+...|+.+..+...-+
T Consensus       179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            344556666677777777777777665432211      23445566666666666665554433

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=90.72  E-value=3.5  Score=27.41  Aligned_cols=32  Identities=13%  Similarity=-0.047  Sum_probs=15.4

Q ss_pred             CcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618           55 DDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT   86 (265)
Q Consensus        55 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   86 (265)
                      +.....+.+++.++..++.++..+..+..+|.
T Consensus        21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~   52 (140)
T smart00299       21 NLLEELIPYLESALKLNSENPALQTKLIELYA   52 (140)
T ss_pred             CcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence            44455555555555544444444444444443

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.58  E-value=3.5  Score=30.73  Aligned_cols=80  Identities=14%  Similarity=0.081  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcC
Q 024618          122 YADVARLFVEAARMSPE------DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQ  189 (265)
Q Consensus       122 ~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~  189 (265)
                      ....++++.++......      ...+...+|..|+..|++++|..+|+.+.......      ..+...+..|+...|+
T Consensus       154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~  233 (247)
T PF11817_consen  154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD  233 (247)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence            33455666666654321      13466788999999999999999999997654432      3567778888999999


Q ss_pred             cHHHHHHHHHHH
Q 024618          190 SADAILAYQRAL  201 (265)
Q Consensus       190 ~~~A~~~~~~~~  201 (265)
                      .+..+...-+.+
T Consensus       234 ~~~~l~~~leLl  245 (247)
T PF11817_consen  234 VEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHh
Confidence            988877665543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=90.53  E-value=0.72  Score=36.76  Aligned_cols=62  Identities=15%  Similarity=0.008  Sum_probs=48.2

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHh--------cCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhc
Q 024618           43 GWRLLGIAHAENDDDQQAIAAMMRAHE--------AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRH  104 (265)
Q Consensus        43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  104 (265)
                      +...+.+++.-+|||..|++.++..--        ..+-...+++..|-+|+.+++|.+|++.|..++-.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567788999999999998765411        12234568899999999999999999999988753

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.41  E-value=6.2  Score=29.74  Aligned_cols=170  Identities=13%  Similarity=0.147  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCC
Q 024618           59 QAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPE  138 (265)
Q Consensus        59 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  138 (265)
                      .|++.-...+..+|..-.+|...-.+.....-..+-...+                       ++.-+..+..+++.+|.
T Consensus        50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~-----------------------ldneld~~~~~lk~~PK  106 (328)
T COG5536          50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHL-----------------------LDNELDFLDEALKDNPK  106 (328)
T ss_pred             HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhh-----------------------hhcHHHHHHHHHhcCCc


Q ss_pred             CHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH------HhhcCcHHHHHHHHHHHhcCCcchhh
Q 024618          139 DADVHIVLGVLYNLS--RQYDKAIESFQTALKLKPQDYSLWNKLGATQ------ANSVQSADAILAYQRALDLKPNYVRA  210 (265)
Q Consensus       139 ~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~A~~~~~~~~~~~~~~~~~  210 (265)
                      +..+|...-.++...  .++..-....++.+..++.+...|...-.+.      ..-..+..-.++-..++..++.+..+
T Consensus       107 ~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~Sa  186 (328)
T COG5536         107 NYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSA  186 (328)
T ss_pred             hhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHH


Q ss_pred             HHHH---HHHHHhcCC------cHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 024618          211 WANM---GISYANQGM------YEESVRYYVRALAMNPKADNAWQYLRIS  251 (265)
Q Consensus       211 ~~~l---~~~~~~~g~------~~~A~~~~~~a~~~~~~~~~~~~~l~~~  251 (265)
                      |...   -...+..|+      +++-+++...++-.+|++..+|..+..+
T Consensus       187 W~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~  236 (328)
T COG5536         187 WHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV  236 (328)
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=90.36  E-value=6.2  Score=29.69  Aligned_cols=192  Identities=16%  Similarity=0.060  Sum_probs=97.2

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHh-----CCCChHHHHHHHHHHhhcCcHH-HHHHHHHHHHhcC------CChHHHHhh
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLK-----NPENSEGWRLLGIAHAENDDDQ-QAIAAMMRAHEAE------PTNLEVLLS   80 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~------~~~~~~~~~   80 (265)
                      -+..+.+.|++..|.++..-.++.     .|.+....-.++.+....+.-+ +-..+.+++++-.      -.++..+..
T Consensus        16 Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~   95 (260)
T PF04190_consen   16 GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHL   95 (260)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHH
T ss_pred             HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHH
Confidence            356666777777766665544432     1333444455555555443222 2333444444432      246889999


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHH----HHHHHHhcCCCCHHHHHHHHH-HHHHccC
Q 024618           81 LGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVAR----LFVEAARMSPEDADVHIVLGV-LYNLSRQ  155 (265)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~l~~-~~~~~~~  155 (265)
                      +|..+.+.|++.+|..+|-..                   ...++..    ...-..+..|.....+...+. .|...++
T Consensus        96 ~a~~~~~e~~~~~A~~Hfl~~-------------------~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n  156 (260)
T PF04190_consen   96 LAEKLWKEGNYYEAERHFLLG-------------------TDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGN  156 (260)
T ss_dssp             HHHHHHHTT-HHHHHHHHHTS--------------------HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHhhccHHHHHHHHHhc-------------------CChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Confidence            999999999999999877322                   1122221    222334556777777776664 4677899


Q ss_pred             HHHHHHHHHHHHhh----CCC----------CHHHHHHHHH--HHHhhcC---cHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618          156 YDKAIESFQTALKL----KPQ----------DYSLWNKLGA--TQANSVQ---SADAILAYQRALDLKPNYVRAWANMGI  216 (265)
Q Consensus       156 ~~~A~~~~~~~~~~----~~~----------~~~~~~~l~~--~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~  216 (265)
                      ...|...+....+.    .|+          ....++.+..  .-...++   +..-.+.|+..++.+|.....+..+|.
T Consensus       157 ~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~  236 (260)
T PF04190_consen  157 LRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQ  236 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence            99999887776655    332          2222222211  1222232   222333444445555666677778888


Q ss_pred             HHHhcCC
Q 024618          217 SYANQGM  223 (265)
Q Consensus       217 ~~~~~g~  223 (265)
                      .|+....
T Consensus       237 ~yFgi~~  243 (260)
T PF04190_consen  237 LYFGIQP  243 (260)
T ss_dssp             HHH---S
T ss_pred             HHCCCCC
Confidence            8887543

; PDB: 3LKU_E 2WPV_G.

>PF13041 PPR_2: PPR repeat family

Probab=90.36  E-value=1.6  Score=22.91  Aligned_cols=29  Identities=17%  Similarity=0.135  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKL  169 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  169 (265)
                      ..|..+-..+.+.|++++|.+.|++..+.
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            34555555555666666666666655543

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=90.32  E-value=8.6  Score=31.25  Aligned_cols=180  Identities=13%  Similarity=0.083  Sum_probs=88.6

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhch
Q 024618           43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYY  122 (265)
Q Consensus        43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (265)
                      ....+|..++..++|+-|...|+.+.+-..++ .+|..+|-++...+     +..+..     +.........-.-..-+
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D-kaw~~~A~~~Em~a-----lsl~~~-----~~~~~~k~~~~~~~~~l  278 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND-KAWKYLAGAQEMAA-----LSLLMQ-----GQSISAKIRKDEIEPYL  278 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc-hhHHHHHhHHHHHH-----HHHHhc-----CCCCccccccccHHHHH
Confidence            34558999999999999999999887744322 33333332222111     111110     00000000000001113


Q ss_pred             HHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CC--C---CHHHHHHHHHHH--HhhcC
Q 024618          123 ADVARLFVEAA----RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL--KP--Q---DYSLWNKLGATQ--ANSVQ  189 (265)
Q Consensus       123 ~~a~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~--~---~~~~~~~l~~~~--~~~~~  189 (265)
                      +.|...|.+.-    .....-.......+.++...|.+.+|...+-+....  ..  .   ..-.+-..|.++  .....
T Consensus       279 e~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~  358 (414)
T PF12739_consen  279 ENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNR  358 (414)
T ss_pred             HHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCC
Confidence            44555555521    111123355666677778888887777766665544  21  1   223334444444  11100


Q ss_pred             cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      .......++       ..+.-+..-|.-|.+.|+...|..+|.+++.....
T Consensus       359 ~~~~~~r~R-------K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  359 PSPGLTRFR-------KYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             CCccchhhH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence            000000000       01112233567788999999999999999887553

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.29  E-value=3.5  Score=34.59  Aligned_cols=30  Identities=27%  Similarity=0.395  Sum_probs=17.2

Q ss_pred             ChHHHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618           40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHE   69 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~   69 (265)
                      +..-|..||......+++..|.+++.++..
T Consensus       665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d  694 (794)
T KOG0276|consen  665 SEVKWRQLGDAALSAGELPLASECFLRARD  694 (794)
T ss_pred             chHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence            344455566666666666666666665533

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=89.74  E-value=4.1  Score=32.41  Aligned_cols=48  Identities=25%  Similarity=0.369  Sum_probs=40.9

Q ss_pred             hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618          119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA  166 (265)
Q Consensus       119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  166 (265)
                      ....-+|+.+++.++..+|.+......+..+|...|-.+.|...|...
T Consensus       196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L  243 (365)
T PF09797_consen  196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL  243 (365)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence            345667888889999999999999999999999999999999988654

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=89.72  E-value=0.74  Score=20.97  Aligned_cols=26  Identities=15%  Similarity=0.379  Sum_probs=14.3

Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618          211 WANMGISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       211 ~~~l~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      |..+-..|.+.|++++|.+.+++..+
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhH
Confidence            34455555556666666666555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=89.44  E-value=8.6  Score=29.94  Aligned_cols=161  Identities=14%  Similarity=0.015  Sum_probs=107.6

Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHhc----C--CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCC------CCCCc-
Q 024618           46 LLGIAHAENDDDQQAIAAMMRAHEA----E--PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPK------YGTIA-  112 (265)
Q Consensus        46 ~l~~~~~~~~~~~~A~~~~~~~~~~----~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~-  112 (265)
                      .+...|+..++|.+|+......+.-    +  +.-.+++..-..+|....+..+|...+..+-.....      ..... 
T Consensus       133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD  212 (411)
T KOG1463|consen  133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD  212 (411)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence            4677889999999999988777642    2  223566777778888888888888888766543211      11111 


Q ss_pred             ---hhhhhhhhchHHHHHHHHHHHhcCC---CCHHH---HHHHHHHHHHccCHHHHHHHH--HHHHhhCCCCHHHHHHHH
Q 024618          113 ---PPELSDSLYYADVARLFVEAARMSP---EDADV---HIVLGVLYNLSRQYDKAIESF--QTALKLKPQDYSLWNKLG  181 (265)
Q Consensus       113 ---~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~---~~~l~~~~~~~~~~~~A~~~~--~~~~~~~~~~~~~~~~l~  181 (265)
                         |..+....+|..|..+|-++++-..   ++..+   +..+-.+-...+..++--..+  ..+++....+..+...++
T Consensus       213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA  292 (411)
T KOG1463|consen  213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA  292 (411)
T ss_pred             HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence               6666667889999999999887532   22333   233333444556666544444  455666667778888888


Q ss_pred             HHHHh--hcCcHHHHHHHHHHHhcCCc
Q 024618          182 ATQAN--SVQSADAILAYQRALDLKPN  206 (265)
Q Consensus       182 ~~~~~--~~~~~~A~~~~~~~~~~~~~  206 (265)
                      ..+.+  ..+|+.|+..|..-+..+|-
T Consensus       293 eA~~nRSLkdF~~AL~~yk~eL~~D~i  319 (411)
T KOG1463|consen  293 EAFGNRSLKDFEKALADYKKELAEDPI  319 (411)
T ss_pred             HHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence            88765  46888899888887776654

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.34  E-value=2  Score=28.74  Aligned_cols=48  Identities=23%  Similarity=0.199  Sum_probs=37.5

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcH
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDD   57 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   57 (265)
                      .+..+...+..|++.-|..+.+.++..+|++..+...++.++..+|.-
T Consensus        73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            466788888899999999999999999999998888888888776643

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.98  E-value=17  Score=32.62  Aligned_cols=159  Identities=17%  Similarity=0.101  Sum_probs=83.6

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHhcC----CChHHHHhhhhhhhhhhhhH--HHHHHHHHHHHhcCCCCCCCc-----
Q 024618           44 WRLLGIAHAENDDDQQAIAAMMRAHEAE----PTNLEVLLSLGVSHTNELEQ--AAALKYLYGWLRHHPKYGTIA-----  112 (265)
Q Consensus        44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~-----  112 (265)
                      +..|+..|...|+.++|+..+.+..+-.    +.....+-..-......+..  +-..++-.=.+..+|....-.     
T Consensus       507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~  586 (877)
T KOG2063|consen  507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED  586 (877)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence            4567788888888888888888887733    32333333333333333333  444555554555555432211     


Q ss_pred             -----------hhhhhhhhchHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc--------cCHHHHHHH--HHHHHhh-
Q 024618          113 -----------PPELSDSLYYADVARLFVEAARMSPE-DADVHIVLGVLYNLS--------RQYDKAIES--FQTALKL-  169 (265)
Q Consensus       113 -----------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--------~~~~~A~~~--~~~~~~~-  169 (265)
                                 ..-+......+-++.+++.++..... ....+..++..|...        ++-+++.+.  .++.... 
T Consensus       587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l  666 (877)
T KOG2063|consen  587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL  666 (877)
T ss_pred             hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence                       22334555566677777777766544 344444454444322        112233333  2222111 


Q ss_pred             ------CCC-------CHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618          170 ------KPQ-------DYSLWNKLGATQANSVQSADAILAYQRALD  202 (265)
Q Consensus       170 ------~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  202 (265)
                            +|+       ....|...+.++.++|+.++|+..+-..+.
T Consensus       667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~  712 (877)
T KOG2063|consen  667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD  712 (877)
T ss_pred             hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence                  111       134566666777777777777777665553

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=88.74  E-value=8.8  Score=29.16  Aligned_cols=167  Identities=12%  Similarity=0.032  Sum_probs=99.6

Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHhcCCC--------hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 024618           45 RLLGIAHAENDDDQQAIAAMMRAHEAEPT--------NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL  116 (265)
Q Consensus        45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  116 (265)
                      ..+++-....+++++|+..|.+.+.....        ...+...++.+|...|++..--+........-.+         
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~---------   77 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMED---------   77 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHH---------
Confidence            55677778889999999999999876321        2346777888888888765544333222211000         


Q ss_pred             hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCc
Q 024618          117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQS  190 (265)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~  190 (265)
                         ---.+..+..+..++..|..+             ..++.-+..+...++.....      ...-..+..++.+.|+|
T Consensus        78 ---ftk~k~~KiirtLiekf~~~~-------------dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Y  141 (421)
T COG5159          78 ---FTKPKITKIIRTLIEKFPYSS-------------DSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKY  141 (421)
T ss_pred             ---hcchhHHHHHHHHHHhcCCCC-------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence               001222334444444444322             22233333333333321111      12334567788999999


Q ss_pred             HHHHHHHHHHHhc------CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618          191 ADAILAYQRALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       191 ~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      .+|+......+..      .|+-..++..-..+|....+..++...+..+-.
T Consensus       142 sdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt  193 (421)
T COG5159         142 SDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAART  193 (421)
T ss_pred             HHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence            9999888776532      344456777788889888888888887776644

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=88.52  E-value=6.8  Score=27.58  Aligned_cols=174  Identities=18%  Similarity=0.160  Sum_probs=80.2

Q ss_pred             CChHHHHHHHHHHHHhCCCChHHHHHHHHHHh-----hcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHH
Q 024618           21 GLLSEAVLALEAEVLKNPENSEGWRLLGIAHA-----ENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL   95 (265)
Q Consensus        21 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~   95 (265)
                      .+|++|.++|+.-...+. .+..-+.+|..++     ..++...|++.+..+-.  .+.+.+...+|.++..-....+  
T Consensus        49 knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~--  123 (248)
T KOG4014|consen   49 KNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRK--  123 (248)
T ss_pred             HHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCcc--
Confidence            445555555554433322 3344444444332     23456667777766654  3445555555555442211000  


Q ss_pred             HHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CC
Q 024618           96 KYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKP--QD  173 (265)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~  173 (265)
                              .+|              +..+|.+++.++-.+  .+..+-+.+...++.-.+  +       +....|  ..
T Consensus       124 --------~dp--------------d~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~  170 (248)
T KOG4014|consen  124 --------ADP--------------DSEKAERYMTRACDL--EDGEACFLLSTMYMGGKE--K-------FKTNAPGEGK  170 (248)
T ss_pred             --------CCC--------------CcHHHHHHHHHhccC--CCchHHHHHHHHHhccch--h-------hcccCCCCCC
Confidence                    011              134555666655443  334455555555543221  1       122233  11


Q ss_pred             HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh----cCCcHHHHHHHHHHHhc
Q 024618          174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN----QGMYEESVRYYVRALAM  237 (265)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~  237 (265)
                      |..   .+..+.-..+.+.|.++--++.+++  ++.+..++.+.|..    -++-++|..+-.++.++
T Consensus       171 p~~---~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  171 PLD---RAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             Ccc---hhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence            211   2233344456667777766666554  34455555555432    12345666666665554

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=88.50  E-value=5.4  Score=26.41  Aligned_cols=52  Identities=13%  Similarity=0.024  Sum_probs=22.1

Q ss_pred             hhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618           52 AENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR  103 (265)
Q Consensus        52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  103 (265)
                      ...|+-++--+.+....+....+|+.+..+|.+|.+.|+..++-+.+.++-+
T Consensus        97 v~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe  148 (161)
T PF09205_consen   97 VKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE  148 (161)
T ss_dssp             HHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            3344444444444444443344455555555555555555555555555444

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=88.38  E-value=10  Score=29.50  Aligned_cols=184  Identities=14%  Similarity=0.033  Sum_probs=99.8

Q ss_pred             CChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-hHHHHhhhhhhhhhhhhHHHHHHHHH
Q 024618           21 GLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT-NLEVLLSLGVSHTNELEQAAALKYLY   99 (265)
Q Consensus        21 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~   99 (265)
                      +--++|+.+=.-+...-|..|+++-.++...++..+..         -..+++ .+..+..--...+..+-.+++...+.
T Consensus       210 ~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~---------AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~  280 (415)
T COG4941         210 DLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRP---------ARFDADGEPVLLEDQDRSLWDRALIDEGLALLD  280 (415)
T ss_pred             hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhh---------hccCCCCCeeeccccchhhhhHHHHHHHHHHHH
Confidence            34567888888888888999998877777665432211         011110 00000000011122223344444444


Q ss_pred             HHHhcCCCCCCCc----hh-----hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-
Q 024618          100 GWLRHHPKYGTIA----PP-----ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL-  169 (265)
Q Consensus       100 ~~~~~~~~~~~~~----~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-  169 (265)
                      +++....--+..+    +.     .....-+|..-..+|.-.....|+ +.+-.+.+.......-...++...+..... 
T Consensus       281 rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~  359 (415)
T COG4941         281 RALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARP  359 (415)
T ss_pred             HHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhccc
Confidence            4443322111111    00     011122455555666666666665 444455555555555566666666655543 


Q ss_pred             -CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHH
Q 024618          170 -KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM  214 (265)
Q Consensus       170 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  214 (265)
                       -......+...|.++.+.|+.++|...|++++.+.++..+..+..
T Consensus       360 ~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~  405 (415)
T COG4941         360 RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR  405 (415)
T ss_pred             ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence             223445677788899999999999999999999888766544433

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=88.33  E-value=12  Score=30.08  Aligned_cols=55  Identities=24%  Similarity=0.129  Sum_probs=28.7

Q ss_pred             hhhhhhchHHHHHHHHHHHhcCCCCH--HHHHHHH--HHHHHccCHHHHHHHHHHHHhh
Q 024618          115 ELSDSLYYADVARLFVEAARMSPEDA--DVHIVLG--VLYNLSRQYDKAIESFQTALKL  169 (265)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~  169 (265)
                      .+...++|..|...+......-|...  ..+..++  ..+...-++.+|.+.++..+..
T Consensus       140 ~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  140 ELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            34455566666666666665322222  2233332  3334556667777777766553

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.27  E-value=3.6  Score=24.08  Aligned_cols=36  Identities=11%  Similarity=0.194  Sum_probs=22.4

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHH
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDAD  141 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  141 (265)
                      |.-+-..|++.+|+.+|                        .+|++.+.+++...|+++.
T Consensus        13 AVe~D~~gr~~eAi~~Y------------------------~~aIe~L~q~~~~~pD~~~   48 (75)
T cd02682          13 AVKAEKEGNAEDAITNY------------------------KKAIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHhcCCHHHHHHHH------------------------HHHHHHHHHHHHhCCChHH
Confidence            33344567777777666                        3445667777777777654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=88.21  E-value=5.7  Score=26.37  Aligned_cols=116  Identities=20%  Similarity=0.341  Sum_probs=64.0

Q ss_pred             hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHH
Q 024618          119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQ  198 (265)
Q Consensus       119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  198 (265)
                      .+.......+++..+..++.++..+..+..++... +..+.+..++.    .++.. -.-..+.++.+.+-++++...+.
T Consensus        20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~y-d~~~~~~~c~~~~l~~~~~~l~~   93 (140)
T smart00299       20 RNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHY-DIEKVGKLCEKAKLYEEAVELYK   93 (140)
T ss_pred             CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccC-CHHHHHHHHHHcCcHHHHHHHHH
Confidence            44566777777777777666777777777777654 34455555552    11111 12223444455555666666655


Q ss_pred             HHHhcCCcchhhHHHHHHHHH-hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024618          199 RALDLKPNYVRAWANMGISYA-NQGMYEESVRYYVRALAMNPKADNAWQYLRISLR  253 (265)
Q Consensus       199 ~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  253 (265)
                      +.    .....+    ..++. ..++++.|++++.+     +.+++.|..++..+.
T Consensus        94 k~----~~~~~A----l~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l  136 (140)
T smart00299       94 KD----GNFKDA----IVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL  136 (140)
T ss_pred             hh----cCHHHH----HHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence            42    111111    11122 22677778877765     346777777776554

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=87.52  E-value=2.7  Score=30.78  Aligned_cols=45  Identities=13%  Similarity=0.151  Sum_probs=29.9

Q ss_pred             hhHHHHHHHHH---------hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618          209 RAWANMGISYA---------NQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       209 ~~~~~l~~~~~---------~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  254 (265)
                      ..+...|..+.         ..++...|+.+++++++++|.. .+-..+..+-.+
T Consensus       170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~  223 (230)
T PHA02537        170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERR  223 (230)
T ss_pred             HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHH
Confidence            44556777773         4567889999999999999874 333333333333

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=86.80  E-value=5  Score=28.52  Aligned_cols=44  Identities=18%  Similarity=0.170  Sum_probs=21.8

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024618          127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKP  171 (265)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  171 (265)
                      +..++.++..|+ +.++..++.++...|+.++|.....++....|
T Consensus       132 ~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  132 EWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             HHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            334444444443 44455555555555555555555555555555

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=86.70  E-value=20  Score=31.10  Aligned_cols=55  Identities=7%  Similarity=-0.203  Sum_probs=34.0

Q ss_pred             HHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618          181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL  235 (265)
Q Consensus       181 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  235 (265)
                      ..+....++++.+...+...-....+.....+.+|..+...|+.++|...|+++.
T Consensus       319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a  373 (644)
T PRK11619        319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM  373 (644)
T ss_pred             HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            3344466666666666555433223345566677777777788888877777764

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=86.70  E-value=21  Score=31.16  Aligned_cols=26  Identities=15%  Similarity=-0.026  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618           42 EGWRLLGIAHAENDDDQQAIAAMMRA   67 (265)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~A~~~~~~~   67 (265)
                      .+-.....+|+.+|+|++|+++.-.+
T Consensus        60 ~AaL~~SKVyy~Lgeye~Al~yAL~a   85 (929)
T KOG2062|consen   60 LAALLASKVYYYLGEYEDALEYALRA   85 (929)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34456677788888888888776665

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=86.54  E-value=15  Score=29.44  Aligned_cols=132  Identities=16%  Similarity=0.058  Sum_probs=75.0

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCC-C--------ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC-----C-ChHHHHh
Q 024618           15 QELFRKGLLSEAVLALEAEVLKNP-E--------NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAE-----P-TNLEVLL   79 (265)
Q Consensus        15 ~~~~~~~~~~~A~~~~~~~~~~~~-~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~-~~~~~~~   79 (265)
                      ..++...++.+|..+-+..+..-. .        ....|+.+..++-..|+...-...+...+...     . .......
T Consensus       134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN  213 (493)
T KOG2581|consen  134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN  213 (493)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence            344566788888877766554211 1        12356667777777777666555555544321     1 1233445


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 024618           80 SLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA  159 (265)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  159 (265)
                      .+-+.|...+.++.|-....+..-  |+...                         +..-....+.+|.+..-+++|..|
T Consensus       214 ~LLr~yL~n~lydqa~~lvsK~~~--pe~~s-------------------------nne~ARY~yY~GrIkaiqldYssA  266 (493)
T KOG2581|consen  214 LLLRNYLHNKLYDQADKLVSKSVY--PEAAS-------------------------NNEWARYLYYLGRIKAIQLDYSSA  266 (493)
T ss_pred             HHHHHHhhhHHHHHHHHHhhcccC--ccccc-------------------------cHHHHHHHHHHhhHHHhhcchhHH
Confidence            555667777777777655444321  11100                         001134556667777777777777


Q ss_pred             HHHHHHHHhhCCCC
Q 024618          160 IESFQTALKLKPQD  173 (265)
Q Consensus       160 ~~~~~~~~~~~~~~  173 (265)
                      .+++-.++...|.+
T Consensus       267 ~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  267 LEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHHHHHhCcch
Confidence            77777777777764

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=86.42  E-value=2.2  Score=19.82  Aligned_cols=26  Identities=19%  Similarity=0.096  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618          143 HIVLGVLYNLSRQYDKAIESFQTALK  168 (265)
Q Consensus       143 ~~~l~~~~~~~~~~~~A~~~~~~~~~  168 (265)
                      |..+-..+.+.|++++|.+.|.+..+
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~   28 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLE   28 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34445556666666666666666543

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=85.92  E-value=12  Score=27.71  Aligned_cols=58  Identities=14%  Similarity=0.053  Sum_probs=30.0

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHh-hcCcHHHHHHHHHHH
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPEN-SEGWRLLGIAHA-ENDDDQQAIAAMMRA   67 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~A~~~~~~~   67 (265)
                      ++.+|....+.|+|++.+.++++++..+|+- .+-...++.+|- ..|....+...+...
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~   63 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI   63 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence            3456667777777777777777777765542 223333444431 233334444444333

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.89  E-value=2.7  Score=24.56  Aligned_cols=25  Identities=20%  Similarity=0.340  Sum_probs=12.4

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618          177 WNKLGATQANSVQSADAILAYQRAL  201 (265)
Q Consensus       177 ~~~l~~~~~~~~~~~~A~~~~~~~~  201 (265)
                      +...+.-+-+.|++.+|+.+|++++
T Consensus         9 ~a~~AVe~D~~gr~~eAi~~Y~~aI   33 (75)
T cd02682           9 YAINAVKAEKEGNAEDAITNYKKAI   33 (75)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            3344444445555555555555544

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=85.85  E-value=5.8  Score=34.30  Aligned_cols=98  Identities=22%  Similarity=0.259  Sum_probs=53.5

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHH--hhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618          147 GVLYNLSRQYDKAIESFQTALKLKPQD----YSLWNKLGATQA--NSVQSADAILAYQRALDLKPNYVRAWANMGISYAN  220 (265)
Q Consensus       147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  220 (265)
                      +..+++.+++..+.--|..++.+-|.+    .....+.+.++.  ..|++..++.-..-++...|....++...+.+|..
T Consensus        60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a  139 (748)
T KOG4151|consen   60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA  139 (748)
T ss_pred             hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence            344455555556555555555555522    222333333333  34566666666666666666666666666666666


Q ss_pred             cCCcHHHHHHHHHHHhcCCCCchh
Q 024618          221 QGMYEESVRYYVRALAMNPKADNA  244 (265)
Q Consensus       221 ~g~~~~A~~~~~~a~~~~~~~~~~  244 (265)
                      .++.+-|++...-.....|.+..+
T Consensus       140 l~k~d~a~rdl~i~~~~~p~~~~~  163 (748)
T KOG4151|consen  140 LNKLDLAVRDLRIVEKMDPSNVSA  163 (748)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcchH
Confidence            666666666655555556665433

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=85.82  E-value=4.2  Score=28.93  Aligned_cols=46  Identities=24%  Similarity=0.313  Sum_probs=27.4

Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618          193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  239 (265)
                      .++..++.+...|+ +.++..++.++...|+.++|.....++....|
T Consensus       130 ~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  130 YIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             HHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            33444444544553 55666666666666666666666666666666

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.81  E-value=13  Score=31.54  Aligned_cols=80  Identities=23%  Similarity=0.277  Sum_probs=44.7

Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC--------CcchhhHH---------
Q 024618          150 YNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLK--------PNYVRAWA---------  212 (265)
Q Consensus       150 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~---------  212 (265)
                      ..+.|+++.|.+...++     ++..-|..||.+....+++..|.++|.++....        ..+.+.+.         
T Consensus       647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~  721 (794)
T KOG0276|consen  647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQ  721 (794)
T ss_pred             hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence            34556666665554432     445566667777777777777777666654331        11222221         


Q ss_pred             ---HHH-HHHHhcCCcHHHHHHHHHH
Q 024618          213 ---NMG-ISYANQGMYEESVRYYVRA  234 (265)
Q Consensus       213 ---~l~-~~~~~~g~~~~A~~~~~~a  234 (265)
                         +++ .+++..|+++++++.+...
T Consensus       722 g~~N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  722 GKNNLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHhc
Confidence               222 3566777788777776654

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=85.31  E-value=1.2  Score=34.52  Aligned_cols=70  Identities=10%  Similarity=0.042  Sum_probs=41.0

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhh
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLG   82 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la   82 (265)
                      .+.+-+..+.+..|+..-..++..++....+++..+..+....++++|++.+..+....|++......+.
T Consensus       281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~  350 (372)
T KOG0546|consen  281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELE  350 (372)
T ss_pred             hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHH
Confidence            3445555555555555555555555555566666666666666666666666666666666655444333

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.18  E-value=2.3  Score=24.88  Aligned_cols=17  Identities=24%  Similarity=0.272  Sum_probs=11.1

Q ss_pred             cCcHHHHHHHHHHHHhc
Q 024618           54 NDDDQQAIAAMMRAHEA   70 (265)
Q Consensus        54 ~~~~~~A~~~~~~~~~~   70 (265)
                      .|++++|+.+|..+++.
T Consensus        19 ~gny~eA~~lY~~ale~   35 (75)
T cd02680          19 KGNAEEAIELYTEAVEL   35 (75)
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            56677777777666653

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=85.13  E-value=21  Score=29.75  Aligned_cols=90  Identities=14%  Similarity=0.035  Sum_probs=43.4

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 024618           77 VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR  154 (265)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  154 (265)
                      .+..+-.++.....+.-....+.+.+....+....+  +.++... ..++-...+++..+.+-++...-..++..|.. +
T Consensus        68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-i  145 (711)
T COG1747          68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-I  145 (711)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-h
Confidence            333333334333334444444444444333322222  3333333 33444455555666565556555666665555 6


Q ss_pred             CHHHHHHHHHHHHh
Q 024618          155 QYDKAIESFQTALK  168 (265)
Q Consensus       155 ~~~~A~~~~~~~~~  168 (265)
                      +-..+..+|.+++.
T Consensus       146 k~sk~a~~f~Ka~y  159 (711)
T COG1747         146 KKSKAAEFFGKALY  159 (711)
T ss_pred             chhhHHHHHHHHHH
Confidence            66666666666654

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=84.74  E-value=4.3  Score=32.26  Aligned_cols=47  Identities=23%  Similarity=0.163  Sum_probs=42.0

Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618          154 RQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA  200 (265)
Q Consensus       154 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  200 (265)
                      +..-+|+..++.++...|.++.....+..+|...|-...|...|...
T Consensus       197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L  243 (365)
T PF09797_consen  197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL  243 (365)
T ss_pred             HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence            34567889999999999999999999999999999999999998753

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=84.34  E-value=14  Score=27.01  Aligned_cols=61  Identities=28%  Similarity=0.334  Sum_probs=54.0

Q ss_pred             hhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024618          114 PELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY  174 (265)
Q Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  174 (265)
                      ..+.+.+...+++...+.-++..|.+......+-.+++-.|+|++|..-++-+-++.|+..
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            3567778899999999999999999999888999999999999999999999999888764

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=83.89  E-value=18  Score=28.09  Aligned_cols=96  Identities=10%  Similarity=0.057  Sum_probs=66.0

Q ss_pred             hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC------hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc--
Q 024618           41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT------NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA--  112 (265)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--  112 (265)
                      .+++...|..|.+.|+.+.|.+.+.+..+..-.      -.-....+|..|....-..+.++..+..++...+...-.  
T Consensus       104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl  183 (393)
T KOG0687|consen  104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL  183 (393)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence            468888999999999999999988877664321      233456677777776666666666666666555433221  


Q ss_pred             ----hhhhhhhhchHHHHHHHHHHHhcC
Q 024618          113 ----PPELSDSLYYADVARLFVEAARMS  136 (265)
Q Consensus       113 ----~~~~~~~~~~~~a~~~~~~~~~~~  136 (265)
                          |...+...++.+|..+|-..+...
T Consensus       184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF  211 (393)
T KOG0687|consen  184 KVYQGLYCMSVRNFKEAADLFLDSVSTF  211 (393)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence                666777778888888887776554

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=83.66  E-value=5.7  Score=25.20  Aligned_cols=46  Identities=15%  Similarity=0.005  Sum_probs=25.9

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           44 WRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      ....|.+.+..|++..|.+...++-+..+..+-.+..-+.+-..+|
T Consensus        62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g  107 (108)
T PF07219_consen   62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG  107 (108)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence            3444556666777777777777776655444444444444444433

These are membrane protein involved in a late step of protoheme IX synthesis [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=82.36  E-value=3.7  Score=19.02  Aligned_cols=27  Identities=7%  Similarity=0.139  Sum_probs=16.2

Q ss_pred             hHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618          210 AWANMGISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      .|..+..++.+.|+++.|...++...+
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~   29 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKE   29 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344555666666666666666665544

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=82.29  E-value=18  Score=26.82  Aligned_cols=59  Identities=15%  Similarity=0.017  Sum_probs=38.3

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-HHHHhhhhhhhh-hhhhHHHHHHHHHHHH
Q 024618           44 WRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-LEVLLSLGVSHT-NELEQAAALKYLYGWL  102 (265)
Q Consensus        44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~-~~~~~~~A~~~~~~~~  102 (265)
                      +..++.+..+.|+|++.+.++++++..+|.- .+-...++.+|- ..|....+...+....
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e   64 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE   64 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence            5678889999999999999999999987753 334444444443 2344445555444433

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.05  E-value=25  Score=28.30  Aligned_cols=92  Identities=11%  Similarity=-0.012  Sum_probs=51.0

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCC---ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC--------hHHHHhh
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPE---NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT--------NLEVLLS   80 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~   80 (265)
                      ..|..|..-|+++.|++.|.++-.....   ....+.++-.+-...|+|.....+..++...-..        .+.+...
T Consensus       155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~  234 (466)
T KOG0686|consen  155 DLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCA  234 (466)
T ss_pred             HHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHH
Confidence            4566666677777777777765433222   2335555666666677776666666666543100        1123334


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHh
Q 024618           81 LGVSHTNELEQAAALKYLYGWLR  103 (265)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~~~  103 (265)
                      -|.+.+..+++..|..+|-.+..
T Consensus       235 agLa~L~lkkyk~aa~~fL~~~~  257 (466)
T KOG0686|consen  235 AGLANLLLKKYKSAAKYFLLAEF  257 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCC
Confidence            44555555677777666655443

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=81.31  E-value=12  Score=24.34  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=16.9

Q ss_pred             hHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618          210 AWANMGISYANQGMYEESVRYYVRA  234 (265)
Q Consensus       210 ~~~~l~~~~~~~g~~~~A~~~~~~a  234 (265)
                      ...++|..+..+|+.+-.+++++-|
T Consensus        52 sCHNLA~FWR~~gd~~yELkYLqlA   76 (140)
T PF10952_consen   52 SCHNLADFWRSQGDSDYELKYLQLA   76 (140)
T ss_pred             HHhhHHHHHHHcCChHHHHHHHHHH
Confidence            3456777777777777777777544

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=81.26  E-value=33  Score=30.21  Aligned_cols=55  Identities=24%  Similarity=0.239  Sum_probs=40.6

Q ss_pred             cCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHhh---------cCcHHHHHHHHHHHHhcCCCh
Q 024618           20 KGLLSEAVLALEAEVLKN-PENSEGWRLLGIAHAE---------NDDDQQAIAAMMRAHEAEPTN   74 (265)
Q Consensus        20 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~   74 (265)
                      -|+-++|+...-.+++.. |-.++.+...|++|-.         .+..+.|++.|+++.+..|..
T Consensus       256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~  320 (1226)
T KOG4279|consen  256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE  320 (1226)
T ss_pred             CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence            577888888888877755 5567777777777643         355677888888888888854

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=80.79  E-value=13  Score=27.27  Aligned_cols=33  Identities=18%  Similarity=0.011  Sum_probs=20.8

Q ss_pred             HhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 024618           78 LLSLGVSHTNELEQAAALKYLYGWLRHHPKYGT  110 (265)
Q Consensus        78 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  110 (265)
                      ....-...+..|+++.|+.....+++.+-..|.
T Consensus        86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd  118 (230)
T PHA02537         86 LMTVMVWRFDIGDFDGALEIAEYALEHGLTMPD  118 (230)
T ss_pred             eeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCc
Confidence            333334556777778887777777776544443

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=80.71  E-value=23  Score=26.99  Aligned_cols=111  Identities=16%  Similarity=0.138  Sum_probs=57.7

Q ss_pred             hhhhhhhchHHHHHHHHHHHhcCCC--CHHHHHHHHHH---HHHccCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024618          114 PELSDSLYYADVARLFVEAARMSPE--DADVHIVLGVL---YNLSRQY----DKAIESFQTALKLKPQDYSLWNKLGATQ  184 (265)
Q Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~---~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~l~~~~  184 (265)
                      ..+...+++++-...+.+..+...+  ..+..+..+..   .......    ..-...++.-++..|++..++..+|..+
T Consensus         8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~   87 (277)
T PF13226_consen    8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW   87 (277)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            3456677777777777776643222  11111222221   1122111    1345566666777888888888888776


Q ss_pred             Hhhc----------------------CcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCc
Q 024618          185 ANSV----------------------QSADAILAYQRALDLKPNYVRAWANMGISYANQGMY  224 (265)
Q Consensus       185 ~~~~----------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  224 (265)
                      ....                      -.+.|...+.+++.++|....+...+-.+-...|..
T Consensus        88 ~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP  149 (277)
T PF13226_consen   88 VHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP  149 (277)
T ss_pred             HHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence            5421                      123445555555555555555555555554445544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=80.68  E-value=21  Score=32.92  Aligned_cols=24  Identities=17%  Similarity=-0.086  Sum_probs=11.4

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHH
Q 024618          144 IVLGVLYNLSRQYDKAIESFQTAL  167 (265)
Q Consensus       144 ~~l~~~~~~~~~~~~A~~~~~~~~  167 (265)
                      ..++.-+...+++-+|-+.....+
T Consensus      1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred             HHHHHHHHHcccchhHHHHHHHHh
Confidence            334444445555555555544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	265
2j9q_A	328	A Novel Conformation For The Tpr Domain Of Pex5p Le		7e-50
2c0m_A	319	Apo Form Of The Tpr Domain Of The Pex5p Receptor Le		8e-50
3r9a_B	328	Human Alanine-Glyoxylate Aminotransferase In Comple		8e-50
1fch_A	368	Crystal Structure Of The Pts1 Complexed To The Tpr		9e-50
2c0l_A	305	Tpr Domain Of Human Pex5p In Complex With Human Msc		7e-49
4eqf_A	365	Trip8b-1a#206-567 Interacting With The Carboxy-Term		4e-45
3cvq_A	327	Structure Of Peroxisomal Targeting Signal 1 (pts1)		5e-42
3cv0_A	327	Structure Of Peroxisomal Targeting Signal 1 (Pts1)		5e-41
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-15
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-14
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-08
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		2e-13
1hxi_A	121	An Unexpected Extended Conformation For The Third T		1e-12
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-11
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		3e-08
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		1e-06
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		5e-08
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		3e-04
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-07
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-07
3asg_A	186	Mama D159k Mutant 2 Length = 186		1e-06
3as4_A	186	Mama Amb-1 C2221 Length = 186		2e-06
3as8_A	186	Mama Msr-1 P41212 Length = 186		4e-06
3asd_A	200	Mama R50e Mutant Length = 200		5e-06
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		2e-04
2q7f_A	243	Crystal Structure Of Yrrb: A Tpr Protein With An Un		4e-04
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		4e-04

>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328

Iteration: 1
 Score =  193 bits (491), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 156/288 (54%), Gaps = 33/288 (11%)
Query: 2   NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP   HP P +EG    ++G              ++P++ E W+ LG   AEN+ +  AI
Sbjct: 19  NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 78
Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE------ 115
           +A+ R  E +P N   L++L VS TNE  Q  A + L  WLR+ P Y  +  P       
Sbjct: 79  SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 138
Query: 116 -------------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAI 160
                        LSDSL+  +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA+
Sbjct: 139 AGLGPSKRILGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 197
Query: 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220
           + F  AL ++P DY LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N
Sbjct: 198 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 257
Query: 221 QGMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
            G + E+V +++ AL M  K           ++N W  LR++L   G+
Sbjct: 258 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 305

>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319

Iteration: 1
 Score =  193 bits (491), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 156/288 (54%), Gaps = 33/288 (11%)
Query: 2   NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP   HP P +EG    ++G              ++P++ E W+ LG   AEN+ +  AI
Sbjct: 10  NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 69
Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE------ 115
           +A+ R  E +P N   L++L VS TNE  Q  A + L  WLR+ P Y  +  P       
Sbjct: 70  SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 129
Query: 116 -------------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAI 160
                        LSDSL+  +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA+
Sbjct: 130 AGLGPSKRILGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 188
Query: 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220
           + F  AL ++P DY LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N
Sbjct: 189 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 248
Query: 221 QGMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
            G + E+V +++ AL M  K           ++N W  LR++L   G+
Sbjct: 249 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 296

>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328

Iteration: 1
 Score =  193 bits (491), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 156/288 (54%), Gaps = 33/288 (11%)
Query: 2   NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP   HP P +EG    ++G              ++P++ E W+ LG   AEN+ +  AI
Sbjct: 19  NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 78
Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE------ 115
           +A+ R  E +P N   L++L VS TNE  Q  A + L  WLR+ P Y  +  P       
Sbjct: 79  SALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGG 138
Query: 116 -------------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAI 160
                        LSDSL+  +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA+
Sbjct: 139 AGLGPSKRILGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 197
Query: 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220
           + F  AL ++P DY LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N
Sbjct: 198 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 257
Query: 221 QGMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
            G + E+V +++ AL M  K           ++N W  LR++L   G+
Sbjct: 258 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 305

>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368

Iteration: 1
 Score =  193 bits (490), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 156/288 (54%), Gaps = 33/288 (11%)
Query: 2   NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP   HP P +EG    ++G              ++P++ E W+ LG   AEN+ +  AI
Sbjct: 59  NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118
Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE------ 115
           +A+ R  E +P N   L++L VS TNE  Q  A + L  WLR+ P Y  +  P       
Sbjct: 119 SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 178
Query: 116 -------------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAI 160
                        LSDSL+  +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA+
Sbjct: 179 AGLGPSKRILGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237
Query: 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220
           + F  AL ++P DY LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N
Sbjct: 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 297
Query: 221 QGMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
            G + E+V +++ AL M  K           ++N W  LR++L   G+
Sbjct: 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345

>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305

Iteration: 1
 Score =  190 bits (482), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 108/283 (38%), Positives = 154/283 (54%), Gaps = 33/283 (11%)
Query: 7   HPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAIAAMMR 66
           HP P +EG    ++G              ++P++ E W+ LG   AEN+ +  AI+A+ R
Sbjct: 1   HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 60
Query: 67  AHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE----------- 115
             E +P N   L++L VS TNE  Q  A + L  WLR+ P Y  +  P            
Sbjct: 61  CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 120
Query: 116 --------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQT 165
                   LSDSL+  +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA++ F  
Sbjct: 121 SKRILGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 179
Query: 166 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYE 225
           AL ++P DY LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N G + 
Sbjct: 180 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 239
Query: 226 ESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
           E+V +++ AL M  K           ++N W  LR++L   G+
Sbjct: 240 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 282

>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal Seven Residues Of Hcn2 Length = 365

Iteration: 1
 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 99/278 (35%), Positives = 158/278 (56%), Gaps = 27/278 (9%)
Query: 2   NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP+   P   +EG +  ++G              ++P ++E W+ LGI  AEN+++Q AI
Sbjct: 60  NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAI 119
Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI-----APPEL 116
            A+ R  E +P NL+ L++L VS+TN   Q  A + L  W++ +PKY  +       P L
Sbjct: 120 VALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGL 179
Query: 117 S--------DSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTA 166
           +        DS     V  L++EAA  + +  D D+   LGVL++LS ++++AI++F  A
Sbjct: 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239
Query: 167 LKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE 226
           L ++P+DYSLWN+LGAT AN  +S +A+ AY RAL+++P ++R+  N+GIS  N G Y E
Sbjct: 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299
Query: 227 SVRYYVRALAMNPK------------ADNAWQYLRISL 252
           +V  ++ AL++  K            + N W  LRI+L
Sbjct: 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337

>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed To Pts1 Peptide (7- Skl) Length = 327

Iteration: 1
 Score =  167 bits (423), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 102/286 (35%), Positives = 141/286 (49%), Gaps = 30/286 (10%)
Query: 2   NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
           NPY+ H NP++EG  + +                K PE  E WR LG+  AEN+ D  AI
Sbjct: 16  NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 75
Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL----- 116
            A+  A   +P ++ V  +L VSHTNE    AAL  L  WL   P+Y  +    L     
Sbjct: 76  IALNHARALDPADIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD 135
Query: 117 -------SDSLYYA------DVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF 163
                  S+  ++A      +   L   A  M+P DA +H  LGVLYNLS  YD A  + 
Sbjct: 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL 195
Query: 164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM 223
           + A++L+P D  LWNKLGAT AN  +  +A+ AY RALD+ P YVR   NM +SY+N   
Sbjct: 196 RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255
Query: 224 YEESVRYYVRALAM-----NPKAD-------NAWQYLRISLRYAGR 257
           Y+ + +  VRA+ M      P  +       + W + R+ L    R
Sbjct: 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301

>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide Length = 327

Iteration: 1
 Score =  164 bits (414), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 140/286 (48%), Gaps = 30/286 (10%)
Query: 2   NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
           NPY+ H NP++EG  + +                  PE  E WR LG+  AEN+ D  AI
Sbjct: 16  NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAI 75
Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL----- 116
            A+  A   +P ++ V  +L VSHTNE    AAL  L  WL   P+Y  +    L     
Sbjct: 76  IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD 135
Query: 117 -------SDSLYYA------DVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF 163
                  S+  ++A      +   L   A  M+P DA +H  LGVLYNLS  YD A  + 
Sbjct: 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL 195
Query: 164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM 223
           + A++L+P D  LWNKLGAT AN  +  +A+ AY RALD+ P YVR   NM +SY+N   
Sbjct: 196 RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255
Query: 224 YEESVRYYVRALAM-----NPKAD-------NAWQYLRISLRYAGR 257
           Y+ + +  VRA+ M      P  +       + W + R+ L    R
Sbjct: 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 64/120 (53%)
Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
           Y +    + +A  + P  A+    LG  Y     YD+AIE +Q AL+L P+    W  LG
Sbjct: 17  YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA 241
                     +AI  YQ+AL+L P    AW N+G +Y  QG Y+E++ YY +AL ++P++
Sbjct: 77  NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 135 MSPED-ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
           M P + A+    LG  Y     YD+AIE +Q AL+L P +   W  LG          +A
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
           I  YQ+AL+L PN   AW N+G +Y  QG Y+E++ YY +AL ++P
Sbjct: 63  IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236
           W  LG          +AI  YQ+AL+L PN   AW N+G +Y  QG Y+E++ YY +AL 
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 237 MNPKADNAWQYLRISLRYAGRY 258
           ++P    AW  L  +    G Y
Sbjct: 72  LDPNNAEAWYNLGNAYYKQGDY 93

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 135 MSPED-ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
           M P + A+    LG  Y     YD+AIE +Q AL+L P +   W  LG          +A
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
           I  YQ+AL+L PN   AW N+G +Y  QG Y+E++ YY +AL + P
Sbjct: 63  IEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 108

>pdb|1HXI|A Chain A, An Unexpected Extended Conformation For The Third Tpr Motif Of The Peroxin Pex5 From Trypanosoma Brucei Length = 121

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 52/110 (47%)
Query: 2   NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
           NPY  H NP +EG    +                K PE  E WR LG+  AEN+ D  AI
Sbjct: 12  NPYXYHENPXEEGLSXLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71
Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI 111
            A+  A   +P ++ V  +L VSHTNE    AAL  L  WL   P+Y  +
Sbjct: 72  IALNHARXLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 135 MSPED-ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
           M P + A+    LG  Y     Y KAIE +Q AL+L P + S W  LG           A
Sbjct: 3   MDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKA 62
Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
           I  YQ+AL+L PN  +AW   G +Y  QG Y++++  Y +AL ++P
Sbjct: 63  IEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDP 108

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 3/233 (1%)
Query: 36  KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL 95
           +NP  +E +  LG  + E    Q+AI     A   +P  ++  ++L  +     +   A+
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 96  KYLYGWLRHHPKYGTIAPP--ELSDSLYYADVAR-LFVEAARMSPEDADVHIVLGVLYNL 152
           +     L+++P    +      L  +L   + A+  +++A    P  A     LG ++N 
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212
             +   AI  F+ A+ L P     +  LG     +     A+ AY RAL L PN+     
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265
           N+   Y  QG+ + ++  Y RA+ + P   +A+  L  +L+  G      D +
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 53/117 (45%)
Query: 132 AARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSA 191
           A + +P  A+ +  LG +Y    Q  +AIE ++ AL+LKP     +  L A    +    
Sbjct: 59  AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL 248
            A+ AY  AL   P+     +++G      G  EE+   Y++A+   P    AW  L
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNL 175

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 31/193 (16%)
Query: 39  ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYL 98
           E +  +  +G       D   AI A  +  +A+P N+E LL LG ++ +           
Sbjct: 3   ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD----------- 51
Query: 99  YGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDK 158
            G            P +  +SL      + FV    +    A+ + +LG    +  +   
Sbjct: 52  IGL-----------PNDAIESL------KKFV---VLDTTSAEAYYILGSANFMIDEKQA 91
Query: 159 AIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISY 218
           AI++ Q A+ L       + KLG    +  +   AI AY++ + +KP ++RA+ ++G++Y
Sbjct: 92  AIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY 151
Query: 219 ANQGMYEESVRYY 231
             +G+ +E+V+Y+
Sbjct: 152 EGKGLRDEAVKYF 164

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN 186
           R + +  +  P + +  + LG  Y      + AIES +  + L       +  LG+    
Sbjct: 26  RAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM 85
Query: 187 SVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246
             +   AI A QRA+ L   Y  A+  +G+ Y + G +++++  Y + +++ P    A+Q
Sbjct: 86  IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQ 145
Query: 247 YLRISLRYAGR 257
              I L Y G+
Sbjct: 146 --SIGLAYEGK 154

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236
           W  LG          +AI  YQ+AL+L PN   AW N+G +Y  QG Y+E++ YY +AL 
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 237 MNP 239
           ++P
Sbjct: 72  LDP 74

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236
           W  LG          +AI  YQ+AL+L P    AW N+G +Y  QG Y+E++ YY +AL 
Sbjct: 6   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 237 MNPKA 241
           ++P++
Sbjct: 66  LDPRS 70

>pdb|3ASG|A Chain A, Mama D159k Mutant 2 Length = 186

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 90/193 (46%), Gaps = 35/193 (18%)
Query: 44  WRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH--TNELEQAAALKYLYGW 101
           +R  GI+HA+     QA+  + + ++A+  +++V L LG+++  T  +++   L      
Sbjct: 11  YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL------ 64
Query: 102 LRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE 161
                         L  SL  AD           +P++  V  VLG+ Y   ++YD A+ 
Sbjct: 65  --------------LERSL--AD-----------APDNVKVATVLGLTYVQVQKYDLAVP 97
Query: 162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ 221
                 +  P ++++  +LG    N  +  +AI +++ AL L+PN  +    +  SY   
Sbjct: 98  LLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM 157
Query: 222 GMYEESVRYYVRA 234
           G +EE++ ++ +A
Sbjct: 158 GRHEEALPHFKKA 170

>pdb|3AS4|A Chain A, Mama Amb-1 C2221 Length = 186

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 90/193 (46%), Gaps = 35/193 (18%)
Query: 44  WRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH--TNELEQAAALKYLYGW 101
           +R  GI+HA+     QA+  + + ++A+  +++V L LG+++  T  +++   L      
Sbjct: 11  YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL------ 64
Query: 102 LRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE 161
                         L  SL  AD           +P++  V  VLG+ Y   ++YD A+ 
Sbjct: 65  --------------LERSL--AD-----------APDNVKVATVLGLTYVQVQKYDLAVP 97
Query: 162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ 221
                 +  P ++++  +LG    N  +  +AI +++ AL L+PN  +    +  SY   
Sbjct: 98  LLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM 157
Query: 222 GMYEESVRYYVRA 234
           G +EE++ ++ +A
Sbjct: 158 GRHEEALPHFKKA 170

>pdb|3AS8|A Chain A, Mama Msr-1 P41212 Length = 186

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 89/198 (44%), Gaps = 31/198 (15%)
Query: 44  WRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR 103
           +R  GI+HA+     +A+  + + ++A+  ++EV L LG+++                  
Sbjct: 11  YRDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYV----------------- 53
Query: 104 HHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF 163
              K G +                L   +   +P++  V  VLG+ Y   ++YD A+   
Sbjct: 54  ---KTGAVDRG-----------TELLERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLL 99
Query: 164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM 223
               +  P ++++  +LG    N  +  +AI +++ AL L+PN  +    +  SY   G 
Sbjct: 100 VKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGS 159
Query: 224 YEESVRYYVRALAMNPKA 241
           +EE++ ++ +A  ++ ++
Sbjct: 160 HEEALPHFKKANELDERS 177

>pdb|3ASD|A Chain A, Mama R50e Mutant Length = 200

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 95/209 (45%), Gaps = 45/209 (21%)
Query: 48  GIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH--TNELEQAAALKYLYGWLRHH 105
           GI+HA+     QA+  + + ++A+  +++V L LG+++  T  +++   L          
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL---------- 64
Query: 106 PKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT 165
                     L  SL  AD           +P++  V  VLG+ Y   ++YD A+     
Sbjct: 65  ----------LERSL--AD-----------APDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 166 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYE 225
             +  P ++++  +LG    N  +  +AI +++ AL L+PN  +    +  SY   G +E
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161
Query: 226 ESVRYYVRA----------LAMNPKADNA 244
           E++ ++ +A          LA+ P+  +A
Sbjct: 162 EALPHFKKANELDEGASVELALVPRGSSA 190

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 50/96 (52%)
Query: 156 YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG 215
           ++ A+  +  A++L P +   +    A  +     A A+   +RA+ + P Y +A+  MG
Sbjct: 28  FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87
Query: 216 ISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS 251
           ++ ++   + E+V YY +AL ++P  +     L+I+
Sbjct: 88  LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123

>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%)
Query: 147 GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN 206
           G +Y +   Y +A + F+ AL+   ++  L+  LG       Q   A+   QRA++L  N
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245
              A    G+  AN+GM +E++  +      +P   +A+
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF 196

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 136 SPEDADVHIVLGVLYNLSRQ---YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192
            P  AD    L  L N+ R+    ++A+  ++ AL++ P+  +  + L +      +  +
Sbjct: 5   CPTHADS---LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 61
Query: 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISL 252
           A++ Y+ A+ + P +  A++NMG +       + +++ Y RA+ +NP   +A   L    
Sbjct: 62  ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH 121
Query: 253 RYAGRYP 259
           + +G  P
Sbjct: 122 KDSGNIP 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-78
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-77
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-22
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-74
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-26
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-23
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-37
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-34
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-32
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-30
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-32
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-28
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-27
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-26
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-25
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-31
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-23
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-31
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-25
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-20
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-29
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-29
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-28
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-21
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-29
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-22
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-20
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-17
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-29
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-28
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-27
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-28
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-26
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-23
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-19
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-27
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-26
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-24
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-27
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-26
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-26
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-25
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-25
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-22
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-12
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-26
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-25
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-26
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-24
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-25
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-20
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-25
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-24
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-23
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-22
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-25
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-23
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-14
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-24
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-23
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-20
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-19
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-24
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-23
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-24
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-18
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-16
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-24
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-21
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-17
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-23
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-23
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-23
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-15
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-22
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-16
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-22
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-21
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-21
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-22
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-14
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-12
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-14
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-22
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-12
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-21
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-21
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-20
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-19
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-15
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-19
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-13
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-18
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-12
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-18
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-16
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	8e-18
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-17
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-17
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	5e-15
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-16
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-13
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-10
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-09
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	7e-08
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-15
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-14
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-12
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-14
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-13
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-13
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-13
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-13
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-13
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-10
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-10
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-10
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-06
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-11
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-11
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-11
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	5e-11
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-11
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-10
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-09
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	9e-06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-10
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	5e-10
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	5e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-04
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	6e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-08
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	1e-08
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-08
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-08
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	7e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	9e-07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	1e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	6e-05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	7e-06
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	8e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-05
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	2e-05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	5e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	8e-05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	1e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	3e-04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-04
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	4e-04

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  238 bits (610), Expect = 9e-78
 Identities = 113/288 (39%), Positives = 159/288 (55%), Gaps = 31/288 (10%)

Query: 2   NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP   HP P +EG    ++G L  AVL  EA V ++P++ E W+ LG   AEN+ +  AI
Sbjct: 59  NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118

Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE------ 115
           +A+ R  E +P N   L++L VS TNE  Q  A + L  WLR+ P Y  +  P       
Sbjct: 119 SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 178

Query: 116 ------------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIE 161
                       L     + +V  LF+ A R+ P   D DV   LGVL+NLS +YDKA++
Sbjct: 179 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 238

Query: 162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ 221
            F  AL ++P DY LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N 
Sbjct: 239 CFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298

Query: 222 GMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGRY 258
           G + E+V +++ AL M  K           ++N W  LR++L   G+ 
Sbjct: 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 9/113 (7%)

Query: 155 QYDKAIESFQTAL----KLKPQDYSLWNKLGATQANSVQSAD-AILAYQRALDLKPN--- 206
           ++++A  + ++ +    KL+ +   +  +            D     Y +    +     
Sbjct: 2   EFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPL 61

Query: 207 -YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
                    G+    +G    +V  +  A+  +PK   AWQYL  +     + 
Sbjct: 62  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  237 bits (607), Expect = 1e-77
 Identities = 105/287 (36%), Positives = 142/287 (49%), Gaps = 30/287 (10%)

Query: 2   NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAI 61
           NPY+ H NP++EG  + +   L+EA LA EA     PE  E WR LG+  AEN+ D  AI
Sbjct: 16  NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAI 75

Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE------ 115
            A+  A   +P ++ V  +L VSHTNE    AAL  L  WL   P+Y  +          
Sbjct: 76  IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD 135

Query: 116 ------------LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF 163
                        +    Y +   L   A  M+P DA +H  LGVLYNLS  YD A  + 
Sbjct: 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL 195

Query: 164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM 223
           + A++L+P D  LWNKLGAT AN  +  +A+ AY RALD+ P YVR   NM +SY+N   
Sbjct: 196 RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255

Query: 224 YEESVRYYVRALAMNP------------KADNAWQYLRISLRYAGRY 258
           Y+ + +  VRA+ M                 + W + R+ L    R 
Sbjct: 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 93.9 bits (234), Expect = 1e-22
 Identities = 43/254 (16%), Positives = 76/254 (29%), Gaps = 48/254 (18%)

Query: 21  GLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS 80
           G + +       E        E     G++  +  +  +A  A     +A P   E   S
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 81  LGVSHT-NELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPED 139
           LG++   NE +  A +                                    A  + P+D
Sbjct: 61  LGLTQAENEKDGLAIIALN--------------------------------HARMLDPKD 88

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSA-------- 191
             VH  L V +      + A+ S +  L  +PQ   L +       +             
Sbjct: 89  IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFF 148

Query: 192 -------DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244
                  +       AL++ PN  +  A++G+ Y     Y+ +     RA+ + P     
Sbjct: 149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208

Query: 245 WQYLRISLRYAGRY 258
           W  L  +L    R 
Sbjct: 209 WNKLGATLANGNRP 222

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  230 bits (588), Expect = 2e-74
 Identities = 102/284 (35%), Positives = 165/284 (58%), Gaps = 27/284 (9%)

Query: 2   NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP+   P   +EG +  ++G L   +L +EA +L++P ++E W+ LGI  AEN+++Q AI
Sbjct: 60  NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAI 119

Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE------ 115
            A+ R  E +P NL+ L++L VS+TN   Q  A + L  W++ +PKY  +   +      
Sbjct: 120 VALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGL 179

Query: 116 -------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTA 166
                    DS     V  L++EAA  + +  D D+   LGVL++LS ++++AI++F  A
Sbjct: 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239

Query: 167 LKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE 226
           L ++P+DYSLWN+LGAT AN  +S +A+ AY RAL+++P ++R+  N+GIS  N G Y E
Sbjct: 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299

Query: 227 SVRYYVRALAMNPK------------ADNAWQYLRISLRYAGRY 258
           +V  ++ AL++  K            + N W  LRI+L    + 
Sbjct: 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  105 bits (263), Expect = 1e-26
 Identities = 30/124 (24%), Positives = 48/124 (38%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
            +D       G+           I   + A+   P D   W  LG TQA +     AI+A
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA 121

Query: 197 YQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG 256
            QR L+L+PN ++A   + +SY N    +++       +  NPK     +  + S     
Sbjct: 122 LQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181

Query: 257 RYPN 260
           R   
Sbjct: 182 RMSK 185

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 95.1 bits (237), Expect = 6e-23
 Identities = 42/266 (15%), Positives = 82/266 (30%), Gaps = 45/266 (16%)

Query: 6   GHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMM 65
              N + E QE   +  +S +            ++  G    G+   +  D    I  M 
Sbjct: 30  ARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFME 89

Query: 66  RAHEAEPTNLEVLLSLGVSHT-NELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYAD 124
            A   +P + E    LG++   NE EQAA +                             
Sbjct: 90  AAILQDPGDAEAWQFLGITQAENENEQAAIVALQ-------------------------- 123

Query: 125 VARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQ 184
                     + P +    + L V Y  +     A E+ +  +K  P+   L      + 
Sbjct: 124 ------RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSP 177

Query: 185 ANSVQSADAILAYQRALDLKPNYVRA------------WANMGISYANQGMYEESVRYYV 232
             + + + + +       +K  Y+ A               +G+ +   G +  ++  + 
Sbjct: 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237

Query: 233 RALAMNPKADNAWQYLRISLRYAGRY 258
            AL + P+  + W  L  +L    R 
Sbjct: 238 AALTVRPEDYSLWNRLGATLANGDRS 263

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 14/114 (12%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANS--------VQSADAILAYQRALDLK 204
           + ++++A  + ++  +   +  + W ++      S        V  + +   Y    +  
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 205 PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
                     G+    +G    ++ +   A+  +P    AWQ+L I+       
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENE 115

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  134 bits (340), Expect = 3e-37
 Identities = 47/255 (18%), Positives = 96/255 (37%), Gaps = 11/255 (4%)

Query: 11  LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA 70
           ++     ++ G    A         + P+N+    LL   H +     ++      A + 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 71  EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKY-------GTIAPPELSDSLYYA 123
            P   E   +LG  +    +   A+++    LR  P +              L  +    
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA----LVAAGDME 118

Query: 124 DVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT 183
              + +V A + +P+   V   LG L     + ++A   +  A++ +P     W+ LG  
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178

Query: 184 QANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243
                +   AI  +++A+ L PN++ A+ N+G       +++ +V  Y+RAL+++P    
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238

Query: 244 AWQYLRISLRYAGRY 258
               L       G  
Sbjct: 239 VHGNLACVYYEQGLI 253

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  126 bits (320), Expect = 2e-34
 Identities = 54/252 (21%), Positives = 99/252 (39%), Gaps = 11/252 (4%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
               F+   L  +       + +NP  +E +  LG  + E    Q+AI     A   +P 
Sbjct: 40  SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKY-------GTIAPPELSDSLYYADVA 126
            ++  ++L  +     +   A++     L+++P         G +    L       +  
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL----LKALGRLEEAK 155

Query: 127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN 186
             +++A    P  A     LG ++N   +   AI  F+ A+ L P     +  LG     
Sbjct: 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 215

Query: 187 SVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246
           +     A+ AY RAL L PN+     N+   Y  QG+ + ++  Y RA+ + P   +A+ 
Sbjct: 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275

Query: 247 YLRISLRYAGRY 258
            L  +L+  G  
Sbjct: 276 NLANALKEKGSV 287

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  120 bits (303), Expect = 5e-32
 Identities = 59/249 (23%), Positives = 98/249 (39%), Gaps = 5/249 (2%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
              L   G +  AV A  + +  NP+       LG         ++A A  ++A E +P 
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY----YADVARLF 129
                 +LG     + E   A+ +    +   P +   A   L + L     +      +
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-LDAYINLGNVLKEARIFDRAVAAY 226

Query: 130 VEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ 189
           + A  +SP  A VH  L  +Y      D AI++++ A++L+P     +  L         
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286

Query: 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249
            A+A   Y  AL L P +  +  N+      QG  EE+VR Y +AL + P+   A   L 
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346

Query: 250 ISLRYAGRY 258
             L+  G+ 
Sbjct: 347 SVLQQQGKL 355

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  115 bits (290), Expect = 3e-30
 Identities = 47/250 (18%), Positives = 88/250 (35%), Gaps = 11/250 (4%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G  L   G L EA       +   P  +  W  LG       +   AI    +A   +P 
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKY-------GTIAPPELSDSLYYADVA 126
            L+  ++LG           A+      L   P +         +      +        
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV----YYEQGLIDLAI 257

Query: 127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN 186
             +  A  + P   D +  L           +A + + TAL+L P      N L   +  
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317

Query: 187 SVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246
                +A+  Y++AL++ P +  A +N+      QG  +E++ +Y  A+ ++P   +A+ 
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377

Query: 247 YLRISLRYAG 256
            +  +L+   
Sbjct: 378 NMGNTLKEMQ 387

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  123 bits (309), Expect = 4e-32
 Identities = 33/235 (14%), Positives = 68/235 (28%), Gaps = 5/235 (2%)

Query: 28  LALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87
           L       ++        +L +    ++D+ +     + +      + ++LL    +   
Sbjct: 258 LNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317

Query: 88  ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY----YADVARLFVEAARMSPEDADVH 143
                  L      L   P       P    SL+       +  +  +     PE A   
Sbjct: 318 RSRFIDVLAITTKILEIDPYN-LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW 376

Query: 144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL 203
           + +G+ Y    +  +A   F  +  + PQ    W     + A   +   AI AY  A  L
Sbjct: 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436

Query: 204 KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
                  +  +G+ +   G    +  Y   + A+          L +        
Sbjct: 437 FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM 491

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  110 bits (277), Expect = 9e-28
 Identities = 34/245 (13%), Positives = 75/245 (30%), Gaps = 28/245 (11%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           GQ          A    +  ++ + +  E +  L   H    D++  +   +        
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA 133
           +   L SL +   N+      L+                             A  ++ + 
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELR----------------------------RAEDYLSSI 298

Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
               + +D+ +       +  ++   +      L++ P +  ++    A+   S +    
Sbjct: 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL 358

Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLR 253
            L     +D  P     W  +GI Y       E+ RY+ ++  M+P+   AW     S  
Sbjct: 359 YLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA 418

Query: 254 YAGRY 258
             G +
Sbjct: 419 IEGEH 423

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  109 bits (275), Expect = 2e-27
 Identities = 43/246 (17%), Positives = 71/246 (28%), Gaps = 42/246 (17%)

Query: 17  LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE 76
                 +SEA          +P+    W     + A   +  QAI+A   A         
Sbjct: 383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442

Query: 77  VLLSLGVSH--TNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAAR 134
             L LG+ H     +  A                                       +  
Sbjct: 443 PYLFLGMQHMQLGNILLANEY---------------------------------LQSSYA 469

Query: 135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL-------KPQDYSLWNKLGATQANS 187
           +   D  +   LGV+         AI  FQ AL L       +    + W  LG      
Sbjct: 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529

Query: 188 VQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY 247
                AI A  + L L  N       + + Y ++ +   ++ +   +LA++P    A   
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589

Query: 248 LRISLR 253
           L+ +L 
Sbjct: 590 LKRALE 595

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  107 bits (268), Expect = 1e-26
 Identities = 38/260 (14%), Positives = 81/260 (31%), Gaps = 26/260 (10%)

Query: 17  LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE 76
                          + +    ++S+                  +A   +  E +P NL+
Sbjct: 281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD 340

Query: 77  VLLSLGVSHTNELEQAAALKYLYG-WLRHHPK----YGTIAPPELSDSLYYADVARL--- 128
           V      S   E  +   L  +    +  HP+    +  +        +YY  V ++   
Sbjct: 341 VYPLHLASLH-ESGEKNKLYLISNDLVDRHPEKAVTWLAVG-------IYYLCVNKISEA 392

Query: 129 ---FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQA 185
              F +++ M P+     I     + +  ++D+AI ++ TA +L    +  +  LG    
Sbjct: 393 RRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452

Query: 186 NSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM-------N 238
                  A    Q +  L          +G+   N+   + ++ ++  AL +        
Sbjct: 453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512

Query: 239 PKADNAWQYLRISLRYAGRY 258
                 W  L  + R    Y
Sbjct: 513 KPWAATWANLGHAYRKLKMY 532

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  104 bits (262), Expect = 1e-25
 Identities = 45/249 (18%), Positives = 82/249 (32%), Gaps = 38/249 (15%)

Query: 17  LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE 76
           L   G  ++  L     V ++PE +  W  +GI +   +   +A     ++   +P    
Sbjct: 349 LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408

Query: 77  VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMS 136
             +    S   E E   A+                                 +  AAR+ 
Sbjct: 409 AWIGFAHSFAIEGEHDQAISA-------------------------------YTTAARLF 437

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
                 ++ LG+ +        A E  Q++  L   D  L N+LG    N      AI  
Sbjct: 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINH 497

Query: 197 YQRALDL-------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249
           +Q AL L       +  +   WAN+G +Y    MY+ ++    + L ++    N    + 
Sbjct: 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557

Query: 250 ISLRYAGRY 258
           +   +    
Sbjct: 558 LVYLHKKIP 566

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 68.3 bits (167), Expect = 3e-13
 Identities = 25/247 (10%), Positives = 69/247 (27%), Gaps = 20/247 (8%)

Query: 15  QELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN 74
            +   +     A    E  +      ++ +  L   +    D  +A   + +        
Sbjct: 92  HDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYNR-- 148

Query: 75  LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAAR 134
                S    +           +                 + ++ L   D          
Sbjct: 149 -----SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI------- 196

Query: 135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ---SA 191
               +A +  + G +Y     +D+A E ++ AL +  + Y  +++L +    +       
Sbjct: 197 --KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDL 254

Query: 192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS 251
              L Y         ++R+   + ++  +          Y+ ++    K+ +       +
Sbjct: 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT 314

Query: 252 LRYAGRY 258
           L    R+
Sbjct: 315 LFVRSRF 321

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score =  111 bits (278), Expect = 4e-31
 Identities = 48/107 (44%), Positives = 62/107 (57%)

Query: 2   NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAI 61
           NPY+ H NP++EG  + +   L+EA LA EA   K PE  E WR LG+  AEN+ D  AI
Sbjct: 12  NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71

Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKY 108
            A+  A   +P ++ V  +L VSHTNE    AAL  L  WL   P+Y
Sbjct: 72  IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 90.6 bits (225), Expect = 3e-23
 Identities = 21/102 (20%), Positives = 41/102 (40%)

Query: 139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQ 198
             +  +  G+         +A  +F+   + +P+    W  LG TQA + +   AI+A  
Sbjct: 16  YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75

Query: 199 RALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
            A  L P  +   A + +S+ N+     ++      L   P+
Sbjct: 76  HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 63.2 bits (154), Expect = 4e-13
 Identities = 19/86 (22%), Positives = 35/86 (40%)

Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
            A+ A  F    +  PE  +    LG+    + +   AI +   A  L P+D ++   L 
Sbjct: 33  LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 92

Query: 182 ATQANSVQSADAILAYQRALDLKPNY 207
            +  N   +  A+ + +  L  +P Y
Sbjct: 93  VSHTNEHNANAALASLRAWLLSQPQY 118

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 62.1 bits (151), Expect = 1e-12
 Identities = 15/82 (18%), Positives = 30/82 (36%)

Query: 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236
             + G +       A+A LA++     +P    AW ++G++ A       ++     A  
Sbjct: 20  PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79

Query: 237 MNPKADNAWQYLRISLRYAGRY 258
           ++PK       L +S       
Sbjct: 80  LDPKDIAVHAALAVSHTNEHNA 101

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  114 bits (288), Expect = 4e-31
 Identities = 38/245 (15%), Positives = 83/245 (33%), Gaps = 31/245 (12%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
                  G   +A  A    + +N E++  +       +  ++ ++A+A   +A E + +
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA 133
                   G  +  +     A                                  F +A 
Sbjct: 90  AATAYYGAGNVYVVKEMYKEAKDM-------------------------------FEKAL 118

Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
           R   E+ D+  +LG +     Q   A+   Q A++L   D     + G   AN     +A
Sbjct: 119 RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178

Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLR 253
           +  +    +  P +  A+ N G++YA +   E+++    +A+ + P    A    ++   
Sbjct: 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238

Query: 254 YAGRY 258
           +   +
Sbjct: 239 HHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 98.7 bits (247), Expect = 5e-25
 Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 4/134 (2%)

Query: 129 FVEAARMSPEDADVH----IVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQ 184
              ++ + P  + +            +    Y+KA E+F  A++   +D   +       
Sbjct: 8   HHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLL 67

Query: 185 ANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244
           ++  +   A+  Y +AL+L  +   A+   G  Y  + MY+E+   + +AL    +  + 
Sbjct: 68  SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127

Query: 245 WQYLRISLRYAGRY 258
           +  L   L    + 
Sbjct: 128 FYMLGTVLVKLEQP 141

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 86.0 bits (214), Expect = 3e-20
 Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 4/106 (3%)

Query: 157 DKAIESFQTALKLKPQDYSLWNKLGATQANSVQSA----DAILAYQRALDLKPNYVRAWA 212
             +      +  L P+   + +  G  Q            A  A+ +A++        + 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
           N     ++    E ++ +Y +AL ++  A  A+            Y
Sbjct: 62  NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY 107

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  112 bits (282), Expect = 2e-29
 Identities = 41/251 (16%), Positives = 82/251 (32%), Gaps = 18/251 (7%)

Query: 24  SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGV 83
             +   +   V    EN +    L   H  N D +          E +P +   L     
Sbjct: 5   KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64

Query: 84  SHTNELEQAAALKYLYG-WLRHHPKY-------GTIAPPELSDSLYYADVARL-FVEAAR 134
           +   EL +A  L YL    +  +P         G           +  + AR    +A  
Sbjct: 65  TLV-ELNKANELFYLSHKLVDLYPSNPVSWFAVGCY----YLMVGHKNEHARRYLSKATT 119

Query: 135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI 194
           +        I  G  + +  ++D+A+ ++ TA +L    +     +G     +  S  A 
Sbjct: 120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179

Query: 195 LAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY 254
             + +AL + P        +G+     G ++ + ++++ AL       N         ++
Sbjct: 180 RFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV----TVDKW 235

Query: 255 AGRYPNRGDIF 265
                N G + 
Sbjct: 236 EPLLNNLGHVC 246

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  111 bits (279), Expect = 5e-29
 Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 6/207 (2%)

Query: 57  DQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL 116
           ++ +   +  + +    NL+V++SL   H    +     K     +   P + +   P  
Sbjct: 4   NKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS-CLPVH 62

Query: 117 SDSLY----YADVARLFVEAARMSPEDADVHIVLGVLY-NLSRQYDKAIESFQTALKLKP 171
             +L       ++  L  +   + P +      +G  Y  +  + + A      A  L+ 
Sbjct: 63  IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122

Query: 172 QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYY 231
                W   G + A   +   A+ AY  A  L          +G+ Y      + + R++
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182

Query: 232 VRALAMNPKADNAWQYLRISLRYAGRY 258
            +AL++ P+       + +     G +
Sbjct: 183 SQALSIAPEDPFVMHEVGVVAFQNGEW 209

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  108 bits (271), Expect = 6e-28
 Identities = 41/231 (17%), Positives = 78/231 (33%), Gaps = 40/231 (17%)

Query: 37  NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALK 96
                  W   G + A   +  QA+AA   A +        +L +G+ +        A +
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAER 180

Query: 97  YLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQY 156
           +                               F +A  ++PED  V   +GV+   + ++
Sbjct: 181 F-------------------------------FSQALSIAPEDPFVMHEVGVVAFQNGEW 209

Query: 157 DKAIESFQTALKLKPQD---------YSLWNKLGATQANSVQSADAILAYQRALDLKPNY 207
             A + F  AL+                L N LG       + A+A+  +++AL L P  
Sbjct: 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269

Query: 208 VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
              ++ +G  ++  G +E +V Y+  AL +      +   L   +      
Sbjct: 270 ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 89.3 bits (222), Expect = 6e-21
 Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 1/139 (0%)

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
           Y      +  E+     E+ DV + L   +  +  +    +     ++  P   S     
Sbjct: 3   YNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH 62

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG-MYEESVRYYVRALAMNP 239
             T     ++ +      + +DL P+   +W  +G  Y   G   E + RY  +A  +  
Sbjct: 63  IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122

Query: 240 KADNAWQYLRISLRYAGRY 258
               AW     S      +
Sbjct: 123 TYGPAWIAYGHSFAVESEH 141

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 32/193 (16%), Positives = 61/193 (31%), Gaps = 40/193 (20%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE---- 69
           G E         A       +   PE+      +G+   +N + + A    + A E    
Sbjct: 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225

Query: 70  -----AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYAD 124
                       +L +LG       + A AL Y                           
Sbjct: 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY--------------------------- 258

Query: 125 VARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQ 184
                 +A  + P++A  +  +G +++L   ++ A++ F TAL L+  D      LG   
Sbjct: 259 ----HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314

Query: 185 ANSVQSADAILAY 197
              +  ++A +  
Sbjct: 315 EMYIGDSEAYIGA 327

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  109 bits (275), Expect = 5e-29
 Identities = 41/248 (16%), Positives = 83/248 (33%), Gaps = 3/248 (1%)

Query: 13  EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP 72
           EG + ++     EA+         +  +         A  E  + + AI+ +  A E   
Sbjct: 11  EGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGR 69

Query: 73  TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFV 130
                   +  S          L  L   + ++ K  T       L+         +   
Sbjct: 70  EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAE 129

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS 190
             A ++PE A+   + G  Y     +  A++++   +K  P+D   ++   A  A  +  
Sbjct: 130 AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF 189

Query: 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250
            +AI    +A++  PN+VRA+     +      Y  ++     A   + + +N      I
Sbjct: 190 PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 249

Query: 251 SLRYAGRY 258
              Y    
Sbjct: 250 DQLYYKAS 257

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 91.1 bits (227), Expect = 5e-22
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 2/122 (1%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
              AD     G  +  +RQ+D+AIE +  A +L   D +  N   A +    +   AI  
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAIST 60

Query: 197 YQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG 256
              A++        +  +  S+A  G     +    + +    K+          L    
Sbjct: 61  LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLR 119

Query: 257 RY 258
             
Sbjct: 120 NA 121

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 86.8 bits (216), Expect = 2e-20
 Identities = 11/129 (8%), Positives = 34/129 (26%), Gaps = 1/129 (0%)

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS 190
           +A     E    + V+   +         +   +  ++         ++          +
Sbjct: 63  DAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ-KSLTEHRTADILTKLRNA 121

Query: 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250
              +   +    + P         G  Y  +  +  +V+ Y   +   P+    +     
Sbjct: 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAA 181

Query: 251 SLRYAGRYP 259
           +L     +P
Sbjct: 182 ALAKLMSFP 190

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 77.6 bits (192), Expect = 3e-17
 Identities = 28/213 (13%), Positives = 61/213 (28%), Gaps = 6/213 (2%)

Query: 17  LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE 76
            + KG    A+  L   V +  E    ++++  + A   +    +  + +  E    +L 
Sbjct: 48  EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107

Query: 77  VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY----YADVARLFVEA 132
                    T        LK        +P+    A        +    + +  + + E 
Sbjct: 108 -EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEAR-LEGKEYFTKSDWPNAVKAYTEM 165

Query: 133 ARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192
            + +PEDA  +            + +AI     A++  P     + +    Q    + A 
Sbjct: 166 IKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 225

Query: 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYE 225
           A+     A           +   I        +
Sbjct: 226 ALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  107 bits (269), Expect = 7e-29
 Identities = 40/211 (18%), Positives = 89/211 (42%), Gaps = 35/211 (16%)

Query: 37  NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN--ELEQAAA 94
           +      +R  GI+HA+     QA+  + + ++A+  +++V L LG+++     +++   
Sbjct: 4   DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63

Query: 95  LKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR 154
           L                                    +   +P++  V  VLG+ Y   +
Sbjct: 64  L---------------------------------LERSLADAPDNVKVATVLGLTYVQVQ 90

Query: 155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM 214
           +YD A+       +  P ++++  +LG    N  +  +AI +++ AL L+PN  +    +
Sbjct: 91  KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150

Query: 215 GISYANQGMYEESVRYYVRALAMNPKADNAW 245
             SY   G +EE++ ++ +A  ++  A    
Sbjct: 151 AFSYEQMGRHEEALPHFKKANELDEGASVEL 181

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  104 bits (262), Expect = 7e-28
 Identities = 25/122 (20%), Positives = 49/122 (40%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
             D DV + LG+ Y  +   D+  E  + +L   P +  +   LG T     +   A+  
Sbjct: 39  AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPL 98

Query: 197 YQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG 256
             +  +  P        +G++  N G ++E++  +  AL + P      + +  S    G
Sbjct: 99  LIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158

Query: 257 RY 258
           R+
Sbjct: 159 RH 160

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  102 bits (256), Expect = 7e-27
 Identities = 21/122 (17%), Positives = 45/122 (36%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
                 +   G+ +  + +Y +A+   +        D  +   LG     +         
Sbjct: 5   DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64

Query: 197 YQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG 256
            +R+L   P+ V+    +G++Y     Y+ +V   ++    NP   N    L ++L   G
Sbjct: 65  LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124

Query: 257 RY 258
           R+
Sbjct: 125 RF 126

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 76.0 bits (188), Expect = 4e-17
 Identities = 38/203 (18%), Positives = 80/203 (39%), Gaps = 35/203 (17%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G    + G  S+AV+ LE     +  + +    LGIA+ +     +    + R+    P 
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74

Query: 74  NLEVLLSLGVSHTN--ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVE 131
           N++V   LG+++    + + A  L                                  ++
Sbjct: 75  NVKVATVLGLTYVQVQKYDLAVPL---------------------------------LIK 101

Query: 132 AARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSA 191
            A  +P + +V   LGV  +   ++D+AI+SF+ AL L+P +  +   +  +     +  
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161

Query: 192 DAILAYQRALDLKPNYVRAWANM 214
           +A+  +++A +L        A +
Sbjct: 162 EALPHFKKANELDEGASVELALV 184

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  110 bits (276), Expect = 2e-28
 Identities = 32/264 (12%), Positives = 82/264 (31%), Gaps = 47/264 (17%)

Query: 11  LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA 70
             +  + F     + A+  L+  +     ++E   L      +  + ++AI+ +  A + 
Sbjct: 124 RSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 183

Query: 71  EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFV 130
           +  N E    +   +    +   +L                                   
Sbjct: 184 KSDNTEAFYKISTLYYQLGDHELSLSE-------------------------------VR 212

Query: 131 EAARMSPEDADVHIVLGVLYNLSR------------QYDKAIESFQTALKLKPQD----Y 174
           E  ++  +          +  L++            +Y  A   +++ +K +P       
Sbjct: 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV 272

Query: 175 SLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA 234
               ++    +   +  +AI      L ++P+ V A  +   +Y  + MY+E+++ Y  A
Sbjct: 273 RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAA 332

Query: 235 LAMNPKADNAWQYLRISLRYAGRY 258
              N       + L  + R   + 
Sbjct: 333 QEHNENDQQIREGLEKAQRLLKQS 356

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  103 bits (260), Expect = 4e-26
 Identities = 34/255 (13%), Positives = 75/255 (29%), Gaps = 17/255 (6%)

Query: 11  LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA 70
           L+ G++L   G L++A+    A V  +P+N   +             + A+  + +    
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66

Query: 71  EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFV 130
           +       L  G     + +   A       L+ +P                   ++L  
Sbjct: 67  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE----------QEEKEAESQLV- 115

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS 190
                  ++        +       Y  AI      L++   D  L            + 
Sbjct: 116 -----KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEP 170

Query: 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250
             AI   + A  LK +   A+  +   Y   G +E S+      L ++      + + + 
Sbjct: 171 RKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 230

Query: 251 SLRYAGRYPNRGDIF 265
            ++   +     +  
Sbjct: 231 -VKKLNKLIESAEEL 244

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 95.0 bits (237), Expect = 8e-23
 Identities = 22/110 (20%), Positives = 41/110 (37%)

Query: 139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQ 198
           D + H+ LG     + Q   A+  F  A+   P +Y  + +         +S  A+    
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 199 RALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL 248
           + + LK ++  A    G     QG  +E+   + + L  NP      +  
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 25/234 (10%), Positives = 52/234 (22%), Gaps = 46/234 (19%)

Query: 40  NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLY 99
           + E    LG           A++    A + +P N               +  AAL    
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD-- 59

Query: 100 GWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA 159
                                          +   +  +     +  G L     + D+A
Sbjct: 60  -----------------------------LTKVIALKMDFTAARLQRGHLLLKQGKLDEA 90

Query: 160 IESFQTALKLKPQDYSLWNKLGATQANSVQSA---------------DAILAYQRALDLK 204
            + F+  LK  P +                                  AI    + L++ 
Sbjct: 91  EDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150

Query: 205 PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
                        +  +G   +++     A  +      A+  +       G +
Sbjct: 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDH 204

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  105 bits (263), Expect = 4e-27
 Identities = 39/266 (14%), Positives = 82/266 (30%), Gaps = 19/266 (7%)

Query: 11  LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA 70
            +    LF+    +EA+        K   +   +    + + E      A   +      
Sbjct: 7   FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK 66

Query: 71  ---EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY----YA 123
                         G     + + + A++     +            ++    Y    + 
Sbjct: 67  VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR-LDMYGQIGSYFYNKGNFP 125

Query: 124 DVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG-- 181
              +   +  R +  D  V   LG  Y  +++Y KA  SF   L+LKP  Y  +      
Sbjct: 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARA 185

Query: 182 -ATQANSVQSADAILAYQRALDL--------KPNYVRAWANMGISYANQGMYEESVRYYV 232
            A Q    +   A   Y++ +++        K   + A   +   Y       ++   + 
Sbjct: 186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245

Query: 233 RALAMNPKADNAWQYLRISLRYAGRY 258
             LA++P    A   L++ L +   +
Sbjct: 246 NILALDPTNKKAIDGLKMKLEHHHHH 271

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  101 bits (255), Expect = 5e-26
 Identities = 24/224 (10%), Positives = 64/224 (28%), Gaps = 28/224 (12%)

Query: 40  NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLY 99
           N +          +N++  +AI    +    +  +  +     V +    +   A K + 
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI- 60

Query: 100 GWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA 159
                                        +      +   +      G +     Q   A
Sbjct: 61  ---------------------------ETYFSKVNATKAKSADFEYYGKILMKKGQDSLA 93

Query: 160 IESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA 219
           I+ +Q A+        ++ ++G+   N      AI   ++ +       + +  +G +Y 
Sbjct: 94  IQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153

Query: 220 NQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD 263
               Y ++   +V+ L + P     + +   +         +G 
Sbjct: 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGL 197

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  106 bits (267), Expect = 9e-27
 Identities = 34/267 (12%), Positives = 81/267 (30%), Gaps = 47/267 (17%)

Query: 11  LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA 70
             +    F  G  + A+  L+  +     ++E   L      +  + ++AI+ +  A + 
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206

Query: 71  EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFV 130
           +  N E    +   +    +   +L                                   
Sbjct: 207 KNDNTEAFYKISTLYYQLGDHELSLSE-------------------------------VR 235

Query: 131 EAARMSPEDADVHIVLGVLYNL------------SRQYDKAIESFQTALKLKPQD----Y 174
           E  ++  +          +  L              +Y  A   +++ +K +P       
Sbjct: 236 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTV 295

Query: 175 SLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA 234
               ++    +   +  +AI      L ++P+ V A  +   +Y  + MY+E+++ Y  A
Sbjct: 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355

Query: 235 LAMNPKADNAWQYLRISLRYAGRYPNR 261
              N       + L  + R   +   R
Sbjct: 356 QEHNENDQQIREGLEKAQRLLKQSQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  100 bits (251), Expect = 2e-24
 Identities = 36/245 (14%), Positives = 75/245 (30%), Gaps = 16/245 (6%)

Query: 11  LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA 70
           L+ G++L   G L++A+    A V  +P+N   +             + A+  + +  + 
Sbjct: 30  LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89

Query: 71  EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFV 130
           +       L  G     + +   A            K     P   S++      ++L  
Sbjct: 90  KMDFTAARLQRGHLLLKQGKLDEAEDDFK-------KVLKSNP---SENEEKEAQSQLI- 138

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS 190
                  ++        +    S  Y  AI      L++   D  L            + 
Sbjct: 139 -----KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP 193

Query: 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250
             AI   + A  LK +   A+  +   Y   G +E S+      L ++      + + + 
Sbjct: 194 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 253

Query: 251 SLRYA 255
             +  
Sbjct: 254 VKKLN 258

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 94.0 bits (234), Expect = 3e-22
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 2/130 (1%)

Query: 136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL 195
           S  D + H+ LG     + Q   A+  F  A+   P +Y  + +         +S  A+ 
Sbjct: 22  SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALP 81

Query: 196 AYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR--ISLR 253
              + + LK ++  A    G     QG  +E+   + + L  NP  +   +     I   
Sbjct: 82  DLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD 141

Query: 254 YAGRYPNRGD 263
              R  ++  
Sbjct: 142 EMQRLRSQAL 151

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 28/247 (11%), Positives = 62/247 (25%), Gaps = 46/247 (18%)

Query: 27  VLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT 86
            L  E    ++  + E    LG           A++    A + +P N            
Sbjct: 12  DLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL 71

Query: 87  NELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVL 146
              +  AAL                                   +  ++  +     +  
Sbjct: 72  AMGKSKAALPD-------------------------------LTKVIQLKMDFTAARLQR 100

Query: 147 GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG-ATQANSVQSA-------------- 191
           G L     + D+A + F+  LK  P +           +++ +Q                
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS 251
            AI    + L++              +  +G   +++     A  +      A+  +   
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL 220

Query: 252 LRYAGRY 258
               G +
Sbjct: 221 YYQLGDH 227

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 11/119 (9%)

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQR 199
              H   GV       Y +++            D     +LG     + Q ADA+  +  
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMA-----------DVEKHLELGKKLLAAGQLADALSQFHA 51

Query: 200 ALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
           A+D  P+   A+      +   G  + ++    + + +      A       L   G+ 
Sbjct: 52  AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  107 bits (268), Expect = 9e-27
 Identities = 34/249 (13%), Positives = 61/249 (24%), Gaps = 10/249 (4%)

Query: 19  RKGLLSEAVLALEAEVLK-----NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
                 EAV A    +        PE               +  Q+ +  + +AH   P 
Sbjct: 45  GGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 104

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY----YADVARLF 129
            +  + S              L  L       P+   +A                +  + 
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-VVAIASHDGGKQALETVQALLPVL 163

Query: 130 VEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ 189
            +A  ++PE        G          + +     A  L PQ        G  +     
Sbjct: 164 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALET 223

Query: 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249
               +    +A  L P  V A A+ G         +  +    +A  + P+   A     
Sbjct: 224 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNS 283

Query: 250 ISLRYAGRY 258
              +     
Sbjct: 284 GGKQALETV 292

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  105 bits (264), Expect = 3e-26
 Identities = 28/245 (11%), Positives = 54/245 (22%), Gaps = 31/245 (12%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
                    +   +  L       PE               +  Q  +  + +AH   P 
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE 172

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA 133
            +  + S G      LE                                  +  +  +A 
Sbjct: 173 QVVAIASNGGGK-QALET------------------------------VQRLLPVLCQAH 201

Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
            ++P+        G          + +     A  L PQ        G  +         
Sbjct: 202 GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 261

Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLR 253
           +    +A  L P  V A A+           +  +    +A  + P+   A        +
Sbjct: 262 LPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 321

Query: 254 YAGRY 258
                
Sbjct: 322 ALETV 326

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  104 bits (261), Expect = 8e-26
 Identities = 30/249 (12%), Positives = 59/249 (23%), Gaps = 5/249 (2%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
                    +   +  L       PE        G      +  Q+ +  + +AH   P 
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY----YADVARLF 129
            +  + S G            L  L       P+   +A                +  + 
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ-VVAIASNGGGKQALETVQRLLPVL 265

Query: 130 VEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ 189
            +A  ++P+                   + +     A  L PQ        G  +     
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALET 325

Query: 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249
               +    +A  L P  V A A+           +  +    +A  + P+   A     
Sbjct: 326 VQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNG 385

Query: 250 ISLRYAGRY 258
              +     
Sbjct: 386 GGKQALETV 394

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  102 bits (256), Expect = 4e-25
 Identities = 32/249 (12%), Positives = 62/249 (24%), Gaps = 5/249 (2%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G        +   +  L       P+        G      +  Q+ +  + +AH   P 
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY----YADVARLF 129
            +  + S G            L  L       P+   +A    S           +  + 
Sbjct: 241 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ-VVAIASNSGGKQALETVQRLLPVL 299

Query: 130 VEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ 189
            +A  ++P+        G          + +     A  L PQ           +     
Sbjct: 300 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET 359

Query: 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249
               +    +A  L P  V A A+ G         +  +    +A  + P+   A     
Sbjct: 360 VQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD 419

Query: 250 ISLRYAGRY 258
              +     
Sbjct: 420 GGKQALETV 428

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  102 bits (255), Expect = 6e-25
 Identities = 28/249 (11%), Positives = 58/249 (23%), Gaps = 5/249 (2%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G        +   +  L       P+        G      +  Q+ +  + +AH   P 
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 274

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY----YADVARLF 129
            +  + S              L  L       P+   +A                +  + 
Sbjct: 275 QVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ-VVAIASNGGGKQALETVQRLLPVL 333

Query: 130 VEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ 189
            +A  ++P+                   + +     A  L P+        G  +     
Sbjct: 334 CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALET 393

Query: 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249
               +    +A  L P  V A A+           +  +    +A  + P+   A     
Sbjct: 394 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 453

Query: 250 ISLRYAGRY 258
                    
Sbjct: 454 GGRPALESI 462

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 95.6 bits (238), Expect = 1e-22
 Identities = 30/232 (12%), Positives = 54/232 (23%), Gaps = 9/232 (3%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G        +   +  L       P+               +  Q+ +  + +AH   P 
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGT------IAPPELSDSLYYADVAR 127
            +  + S G            L  L       P+              L        +  
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET---VQRLLP 365

Query: 128 LFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANS 187
           +  +A  ++PE        G          + +     A  L P+           +   
Sbjct: 366 VLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL 425

Query: 188 VQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
                 +    +A  L P  V A A+ G            +     ALA   
Sbjct: 426 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 73.2 bits (180), Expect = 5e-15
 Identities = 26/207 (12%), Positives = 50/207 (24%), Gaps = 6/207 (2%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
                    +   +  L       P+        G      +  Q+ +  + +AH   P 
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 342

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY----YADVARLF 129
            +  + S              L  L       P+   +A                +  + 
Sbjct: 343 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-VVAIASNGGGKQALETVQRLLPVL 401

Query: 130 VEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ 189
            +A  ++PE                   + +     A  L PQ        G  +     
Sbjct: 402 CQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALES 461

Query: 190 SADAILAYQRALDLKPN-YVRAWANMG 215
               +     AL    N ++ A A +G
Sbjct: 462 IVAQLSRPDPALAALTNDHLVALACLG 488

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 20/121 (16%), Positives = 29/121 (23%)

Query: 138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAY 197
           E    H        L      A E     L+L         K G   A     A      
Sbjct: 2   EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALT 61

Query: 198 QRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257
              L+L P  V A A+           +  +    +A  + P+   A        +    
Sbjct: 62  GAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET 121

Query: 258 Y 258
            
Sbjct: 122 V 122

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score =  100 bits (251), Expect = 1e-26
 Identities = 44/119 (36%), Positives = 63/119 (52%)

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQR 199
           A+    LG  Y     YD+AIE +Q AL+L P+    W  LG          +AI  YQ+
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 200 ALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
           AL+L P    AW N+G +Y  QG Y+E++ YY +AL ++P++  AW  L  +    G Y
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 119

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 96.3 bits (241), Expect = 3e-25
 Identities = 40/104 (38%), Positives = 57/104 (54%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
           P  A+    LG  Y     YD+AIE +Q AL+L P+    W  LG          +AI  
Sbjct: 32  PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 91

Query: 197 YQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           YQ+AL+L P    AW N+G +Y  QG Y+E++ YY +AL ++P+
Sbjct: 92  YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  106 bits (266), Expect = 2e-26
 Identities = 33/254 (12%), Positives = 75/254 (29%), Gaps = 42/254 (16%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
              +  +   +E     +  +  +  NS  +   G  +    +  QA     +A E +P 
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA 133
           N+   + L      E +                                      F EA 
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETL-------------------------------FSEAK 365

Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSA-- 191
           R  PE  +V      +      +DKA++ +  A++L+ +   ++  +      +      
Sbjct: 366 RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425

Query: 192 -------DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244
                  +A    ++A  L P   +A   +      Q   +E++  +  +  +       
Sbjct: 426 PTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR--TME 483

Query: 245 WQYLRISLRYAGRY 258
            +   I+   A + 
Sbjct: 484 EKLQAITFAEAAKV 497

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  100 bits (252), Expect = 2e-24
 Identities = 30/245 (12%), Positives = 75/245 (30%), Gaps = 32/245 (13%)

Query: 20  KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLL 79
             L  E +     +     + +      GI     +D   A   + +A E  P  +   +
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYI 274

Query: 80  SLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPED 139
            + +   +  +      Y                               F +A ++   +
Sbjct: 275 YMALIMADRNDSTEYYNY-------------------------------FDKALKLDSNN 303

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQR 199
           + V+   G +  + + YD+A + F  A +L P++   + +L        +  D    +  
Sbjct: 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE 363

Query: 200 ALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYP 259
           A    P              ++  ++++++ Y  A+ +  K D  +  +   +  A    
Sbjct: 364 AKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT 423

Query: 260 NRGDI 264
               +
Sbjct: 424 RNPTV 428

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 81.3 bits (201), Expect = 1e-17
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 2/129 (1%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
            + A      G  +  +++YD AI+ +  AL+LK  D   ++ L A   +       +  
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEM 61

Query: 197 YQRALDLKPNYVRAWANMGISYANQGMYEESVRYY-VRALAMNPKADNAWQYLRISLRYA 255
             +AL+LKP+Y +       +    G + +++    V +L  +    +    L  +L   
Sbjct: 62  STKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ 121

Query: 256 GRYPNRGDI 264
                +   
Sbjct: 122 AMSKLKEKF 130

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 78.2 bits (193), Expect = 1e-16
 Identities = 31/273 (11%), Positives = 74/273 (27%), Gaps = 32/273 (11%)

Query: 17  LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRA---HEAEPT 73
               G L + V      +   P+ S+       A+        A+  +       +    
Sbjct: 49  YVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA 108

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKY-------GTIAPPELSDSLYYADVA 126
           ++E +L   ++     +       +        +               L      A   
Sbjct: 109 SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168

Query: 127 RLFVEAARMSPEDADVHIVLGVLYNLS---------------------RQYDKAIESFQT 165
            +F      +  D        ++  LS                     R +++ ++    
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228

Query: 166 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYE 225
             KLK +        G  +        A    ++A++L P    ++  M +  A++    
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDST 287

Query: 226 ESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
           E   Y+ +AL ++    + + +          Y
Sbjct: 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 63.6 bits (155), Expect = 9e-12
 Identities = 31/190 (16%), Positives = 52/190 (27%), Gaps = 12/190 (6%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           GQ  F      +A    +     +PEN   +  L       +           A    P 
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI------------APPELSDSLY 121
             EV        T++ +   ALK     +    K   I                      
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430

Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
           + +   L  +A+++ P      I L  +       D+AI  F+ +  L          + 
Sbjct: 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490

Query: 182 ATQANSVQSA 191
             +A  VQ  
Sbjct: 491 FAEAAKVQQR 500

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 29/278 (10%), Positives = 79/278 (28%), Gaps = 33/278 (11%)

Query: 12  KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAE 71
            +G + FR     +A+       L+  E+   +  L   +    D ++ +    +A E +
Sbjct: 11  DKGNQFFRNKKYDDAIKYYN-WALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK 69

Query: 72  PTNLEVLLSLGVSHT--NELEQAAA------------LKYLYGWLRHHPKYGTI-----A 112
           P   +VLL    ++    +   A                 +   L  +     +      
Sbjct: 70  PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEK 129

Query: 113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ 172
             ++  +              R   ++    +     +    + +    ++  + +   +
Sbjct: 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE 189

Query: 173 DYSLWNKLGATQANSVQSAD------------AILAYQRALDLKPNYVRAWANMGISYAN 220
             +  + L      S   AD             +        LK     +  + GI    
Sbjct: 190 LMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249

Query: 221 QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
           +     +     +A+ + P+  N++ Y+ + +      
Sbjct: 250 KNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDS 286

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 170 KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVR 229
           K +        G     + +  DAI  Y  AL+LK + V  ++N+   Y + G  ++ V 
Sbjct: 2   KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVE 60

Query: 230 YYVRALAMNPKADNAWQYLRISLRYAGRY 258
              +AL + P           +    G++
Sbjct: 61  MSTKALELKPDYSKVLLRRASANEGLGKF 89

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 14/160 (8%), Positives = 33/160 (20%), Gaps = 18/160 (11%)

Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL---KPQDYSLWN 178
              V  +  +A  + P+ + V +          ++  A+                     
Sbjct: 55  LKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114

Query: 179 KLGATQANSVQSADAILAYQRALDLKPNYVRA-------------WANMGISYANQGMYE 225
           +    +    +  +       A                             S+      E
Sbjct: 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174

Query: 226 ESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265
            +   Y  +   + +  N    L    R    Y    + F
Sbjct: 175 LTFANYDESNEADKELMNGLSNL--YKRSPESYDKADESF 212

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  104 bits (260), Expect = 2e-25
 Identities = 26/144 (18%), Positives = 45/144 (31%)

Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
                     A R  P+D    ++L               + Q  L L P       +LG
Sbjct: 5   GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA 241
             +    + A+A +  Q+A D  P +      +G +  + G  E +   Y RA  + P+ 
Sbjct: 65  RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124

Query: 242 DNAWQYLRISLRYAGRYPNRGDIF 265
                 L    R    +     + 
Sbjct: 125 PYITAQLLNWRRRLCDWRALDVLS 148

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 89.5 bits (222), Expect = 2e-20
 Identities = 23/108 (21%), Positives = 44/108 (40%)

Query: 152 LSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW 211
           ++    + +   + A++ +PQD+  W  L   +     +    +A QR L L P +  A 
Sbjct: 1   MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60

Query: 212 ANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYP 259
           A +G     Q  + E+     +A    P+      +L  +L  AG+  
Sbjct: 61  ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAE 108

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 32/197 (16%), Positives = 62/197 (31%), Gaps = 34/197 (17%)

Query: 21  GLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS 80
                 +L L A V   P++   W +L  A     D      A+ R     P + E +  
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 81  LGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDA 140
           LG       ++                              +A+ A L  +A+  +PE  
Sbjct: 63  LGRVRW-TQQR------------------------------HAEAAVLLQQASDAAPEHP 91

Query: 141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT---QANSVQSADAILAY 197
            + + LG     + Q + A  ++  A +L P++  +  +L        +           
Sbjct: 92  GIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151

Query: 198 QRALDLKPNYVRAWANM 214
           + A+      V  +A +
Sbjct: 152 RAAVAQGVGAVEPFAFL 168

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 13/77 (16%), Positives = 23/77 (29%)

Query: 189 QSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL 248
                +L  + A+  +P    AW  +  +    G          R LA++P    A   L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 249 RISLRYAGRYPNRGDIF 265
                   R+     + 
Sbjct: 64  GRVRWTQQRHAEAAVLL 80

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 15/85 (17%), Positives = 31/85 (36%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
                  G  +   +A++  +  +P + E    LG          +A   + +A +A P 
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89

Query: 74  NLEVLLSLGVSHTNELEQAAALKYL 98
           +  + L LG +  +  +  AA    
Sbjct: 90  HPGIALWLGHALEDAGQAEAAAAAY 114

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 27/123 (21%), Positives = 41/123 (33%), Gaps = 1/123 (0%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G+  + +   +EA + L+      PE+      LG A  +    + A AA  RAH+  P 
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA 133
              +   L       L    AL  L   +R     G  A    +     A  A     A 
Sbjct: 124 EPYITAQLLNWR-RRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACAR 182

Query: 134 RMS 136
             +
Sbjct: 183 TRA 185

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 98.8 bits (247), Expect = 2e-25
 Identities = 42/226 (18%), Positives = 79/226 (34%), Gaps = 21/226 (9%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G +L+  G    A+   E  + +NP++ E    L     +      A+          P 
Sbjct: 12  GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA 133
            L   + L  ++     QA   +   G                    Y      +  +A 
Sbjct: 72  YLGGYMVLSEAYVALYRQAEDRERGKG--------------------YLEQALSVLKDAE 111

Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
           R++P  A +H+  G++Y L  + DKA  S + AL L+     + + L     +  +  +A
Sbjct: 112 RVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEA 170

Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
           +  Y +AL+  P  +        +   +G  EE+ R        + 
Sbjct: 171 LAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 95.7 bits (239), Expect = 4e-24
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 12/141 (8%)

Query: 129 FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSV 188
           F  A + +P+D +    L          + A+E+ +T +   P+    +  L        
Sbjct: 28  FERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALY 87

Query: 189 QSA-----------DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM 237
           + A            A+   + A  + P Y       G+ YA  G  +++     +ALA+
Sbjct: 88  RQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147

Query: 238 NPKADNAWQYLRISLRYAGRY 258
               +     L       GR 
Sbjct: 148 EDTPE-IRSALAELYLSMGRL 167

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 93.8 bits (234), Expect = 2e-23
 Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 11/133 (8%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
                  + LGV      +YD A+  F+ ALK  PQD      L  TQ        A+  
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61

Query: 197 YQRALDLKPNYVRAWANMGISYAN-----------QGMYEESVRYYVRALAMNPKADNAW 245
            +  +   P Y+  +  +  +Y             +G  E+++     A  +NP+     
Sbjct: 62  GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121

Query: 246 QYLRISLRYAGRY 258
               +     G  
Sbjct: 122 LQRGLVYALLGER 134

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 90.7 bits (226), Expect = 3e-22
 Identities = 36/232 (15%), Positives = 69/232 (29%), Gaps = 43/232 (18%)

Query: 38  PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKY 97
               +    LG+          A+    RA +  P + E L  L  +         AL+ 
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61

Query: 98  LYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLG-VLYNLSR-- 154
                                                 +P     ++VL      L R  
Sbjct: 62  -------------------------------GKTLVARTPRYLGGYMVLSEAYVALYRQA 90

Query: 155 --------QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN 206
                     ++A+   + A ++ P+   L  + G   A   +   A  + ++AL L+  
Sbjct: 91  EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150

Query: 207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
                + +   Y + G  +E++  Y +AL   PK  +       +L   G+ 
Sbjct: 151 P-EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKA 201

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 66.0 bits (162), Expect = 3e-13
 Identities = 13/83 (15%), Positives = 27/83 (32%)

Query: 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236
             +LG       +   A+  ++RAL   P    A   +  +    G+   ++      +A
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67

Query: 237 MNPKADNAWQYLRISLRYAGRYP 259
             P+    +  L  +     R  
Sbjct: 68  RTPRYLGGYMVLSEAYVALYRQA 90

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  102 bits (255), Expect = 7e-25
 Identities = 29/238 (12%), Positives = 69/238 (28%), Gaps = 32/238 (13%)

Query: 21  GLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS 80
            +    + A   +       +      GI H   ++   A   +  +    PT     + 
Sbjct: 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIF 281

Query: 81  LGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDA 140
           L ++  ++       K+                               F +A  ++PE  
Sbjct: 282 LALTLADKENSQEFFKF-------------------------------FQKAVDLNPEYP 310

Query: 141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA 200
             +   G +Y + + Y  A E FQ A  L P++   + +L        +  ++   +   
Sbjct: 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNET 370

Query: 201 LDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
               P              ++G ++ +++ Y  A  +    +     +   +  A   
Sbjct: 371 KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  100 bits (252), Expect = 2e-24
 Identities = 39/265 (14%), Positives = 83/265 (31%), Gaps = 24/265 (9%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G   F K  L +A + L+  +  +P     +  L +  A+ ++ Q+      +A +  P 
Sbjct: 250 GIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE 308

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY----YADVARLF 129
                   G  +    +   A +        +P+       +L+  LY    + +    F
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-VYPYIQLACLLYKQGKFTESEAFF 367

Query: 130 VEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ 189
            E     P   +V      +      +D AI+ +  A +L+     +   +G     +  
Sbjct: 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427

Query: 190 SA----------------DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR 233
            A                 AI    +A +L P   +A   +          +E++  +  
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487

Query: 234 ALAMNPKADNAWQYLRISLRYAGRY 258
           +  +    D   Q    +   A + 
Sbjct: 488 SAILARTMDEKLQAT--TFAEAAKI 510

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 97.9 bits (244), Expect = 2e-23
 Identities = 34/258 (13%), Positives = 66/258 (25%), Gaps = 34/258 (13%)

Query: 4   YVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDD--QQAI 61
           + G  +   E   +        A   L   + +    ++   L+         D     +
Sbjct: 170 FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229

Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY 121
           +A              L   G+ H  +     A                           
Sbjct: 230 SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL------------------------ 265

Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
                    E+  + P   + +I L +         +  + FQ A+ L P+    +   G
Sbjct: 266 -------LQESINLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317

Query: 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA 241
                     +A   +Q+A  L P  V  +  +      QG + ES  ++       P  
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377

Query: 242 DNAWQYLRISLRYAGRYP 259
                +    L   G + 
Sbjct: 378 PEVPTFFAEILTDRGDFD 395

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 84.8 bits (210), Expect = 6e-19
 Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 131 EAARMSPED----ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN 186
           +   +SP      A      G  +  ++ +++AI+ +Q A++L P +   ++ + A   +
Sbjct: 12  QLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIS 71

Query: 187 SVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245
           +      I    +AL++KP++ +A      +  + G + +++      L++N   D A 
Sbjct: 72  TGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVLSLNGDFDGAS 129

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 84.4 bits (209), Expect = 1e-18
 Identities = 32/262 (12%), Positives = 76/262 (29%), Gaps = 18/262 (6%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G   F     +EA+   +  +  +P     +  +   +    D ++ I    +A E +P 
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91

Query: 74  NLEVLLSLGV--SHTNELEQA-----AALKYLYGWLRHHPKYGTIAPPELSDSLYYADVA 126
           + + LL              A                           + +  +   +++
Sbjct: 92  HSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLS 151

Query: 127 RLFVEAARMSPEDADVHIVLGVL--------YNLSRQYDKAIESFQTALKLKPQDYSLWN 178
           +     +++ P +  +    G+          N S  YD A      AL+          
Sbjct: 152 KDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211

Query: 179 KLGATQANSVQSA--DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236
            +               + A      L+ N   A    GI +  +    ++      ++ 
Sbjct: 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271

Query: 237 MNPKADNAWQYLRISLRYAGRY 258
           ++P   N++ +L ++L      
Sbjct: 272 LHPTP-NSYIFLALTLADKENS 292

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 82.1 bits (203), Expect = 6e-18
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 155 QYDKAIESFQTALKLKPQDYS----LWNKLGATQANSVQSADAILAYQRALDLKPNYVRA 210
            +            L P             G     +    +AI  YQ A++L PN    
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 211 WANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
           ++N+   Y + G  E+ + +  +AL + P    A      +    G +
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 80.9 bits (200), Expect = 2e-17
 Identities = 31/233 (13%), Positives = 61/233 (26%), Gaps = 17/233 (7%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           GQ  F       A    +     NPEN   +  L     +     ++ A         PT
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA 133
             EV        T+  +   A+K      R                  +  +  L  +  
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ----------EKIHVGIGPLIGK-- 424

Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
                                +++ AI+    A +L P+       L   +    +  +A
Sbjct: 425 ---ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481

Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246
           I  ++ +  L             ++A     ++ +R      A        ++
Sbjct: 482 IELFEDSAILARTMDEKLQA--TTFAEAAKIQKRLRADPIISAKMELTLARYR 532

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 70.5 bits (173), Expect = 4e-14
 Identities = 35/210 (16%), Positives = 56/210 (26%), Gaps = 24/210 (11%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
              L+++G  +E+        LK P   E          +  D   AI     A   E  
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA 133
             ++ + +G         A                     P   D   +    +L  +A 
Sbjct: 411 QEKIHVGIGPLIGKATILARQSSQ---------------DPTQLDEEKFNAAIKLLTKAC 455

Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
            + P      I L  L     + D+AIE F+ +  L              +A        
Sbjct: 456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAK------ 509

Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGM 223
               Q+ L   P            Y  +GM
Sbjct: 510 ---IQKRLRADPIISAKMELTLARYRAKGM 536

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 98.5 bits (246), Expect = 1e-24
 Identities = 29/136 (21%), Positives = 50/136 (36%)

Query: 123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGA 182
           A + ++    A    E A +    GVLY+       A   F  AL ++P    ++N LG 
Sbjct: 26  ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGI 85

Query: 183 TQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242
               +     A  A+   L+L P Y  A  N GI+    G  + +    +     +P   
Sbjct: 86  YLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145

Query: 243 NAWQYLRISLRYAGRY 258
               +L ++ +     
Sbjct: 146 FRSLWLYLAEQKLDEK 161

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 93.5 bits (233), Expect = 8e-23
 Identities = 39/246 (15%), Positives = 69/246 (28%), Gaps = 15/246 (6%)

Query: 23  LSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLG 82
           L+     L +  L + E ++     G+ +        A     +A    P   EV   LG
Sbjct: 25  LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG 84

Query: 83  VSHTNELEQAAALKYLYGWLRHHPKY-------GTIAPPELSDSLYYADVARLFVEAARM 135
           +  T      AA +     L   P Y       G      L             +   + 
Sbjct: 85  IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA----LYYGGRDKLAQDDLLAFYQD 140

Query: 136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSA---D 192
            P D    + L  L        +A E  +   +   ++   WN +     N  +      
Sbjct: 141 DPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER 199

Query: 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISL 252
                     L  +       +G  Y + G  + +   +  A+A N       +Y  + L
Sbjct: 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLEL 259

Query: 253 RYAGRY 258
              G+ 
Sbjct: 260 SLLGQD 265

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 87.4 bits (217), Expect = 1e-20
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 4/127 (3%)

Query: 136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALK----LKPQDYSLWNKLGATQANSVQSA 191
           S        VL V    + Q +  +   +  L        +   L  + G    +    A
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS 251
            A   + +AL ++P+    +  +GI     G ++ +   +   L ++P  + A     I+
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120

Query: 252 LRYAGRY 258
           L Y GR 
Sbjct: 121 LYYGGRD 127

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 84.7 bits (210), Expect = 1e-19
 Identities = 25/215 (11%), Positives = 60/215 (27%), Gaps = 29/215 (13%)

Query: 17  LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE 76
           L + G    A  A ++ +  +P  +      GIA      D+ A   ++  ++ +P +  
Sbjct: 87  LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 146

Query: 77  VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMS 136
             L L ++     E+ A                               + + F ++ +  
Sbjct: 147 RSLWLYLAEQKLDEKQAK----------------------------EVLKQHFEKSDKEQ 178

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
                V   LG +   +   ++          L          LG    +      A   
Sbjct: 179 WGWNIVEFYLGNISEQTL-MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237

Query: 197 YQRALDLKPNYVRAWANMGISYANQGMYEESVRYY 231
           ++ A+    +         +  +  G  ++ +   
Sbjct: 238 FKLAVANNVHNFVEHRYALLELSLLGQDQDDLAES 272

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 96.4 bits (240), Expect = 2e-24
 Identities = 26/221 (11%), Positives = 64/221 (28%), Gaps = 24/221 (10%)

Query: 39  ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYL 98
           ++ +       A  E   + QA++   +         E+                   Y 
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEM-------------------YY 42

Query: 99  YGWLRHHPKYGTIAPPELSDSLY----YADVARLFVEAARMSPEDADVHIVLGVLYNLSR 154
           +  +  + +  +    EL+ +      Y      + E  + +P + D       +     
Sbjct: 43  WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG 102

Query: 155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD-AILAYQRALDLKPNYVRAWAN 213
           Q   A+  ++  L+L+  + +    LG     + +     +    + L        A   
Sbjct: 103 QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162

Query: 214 MGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY 254
            G+S      YE++     + +   P  +      +I    
Sbjct: 163 DGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIE 203

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 92.1 bits (229), Expect = 7e-23
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 1/134 (0%)

Query: 126 ARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQA 185
              +    + S   + +   L + Y  +R YDKA   ++  L+  P +          Q 
Sbjct: 40  MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV 99

Query: 186 NSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG-MYEESVRYYVRALAMNPKADNA 244
              Q  DA+  Y++ L L+ + + A   +G  Y       ++ +    + L+   K   A
Sbjct: 100 CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159

Query: 245 WQYLRISLRYAGRY 258
                +S  +  RY
Sbjct: 160 RYRDGLSKLFTTRY 173

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 73.2 bits (180), Expect = 8e-16
 Identities = 28/233 (12%), Positives = 69/233 (29%), Gaps = 49/233 (21%)

Query: 11  LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRL----------------LGIAHAEN 54
           L++       G   +AV      +  N + +E +                  L +A+ +N
Sbjct: 8   LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67

Query: 55  DDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPP 114
            +  +A        +  P N++ L +         ++  AL+                  
Sbjct: 68  RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRM----------------- 110

Query: 115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLG-VLYNLSRQYDKAIESFQTALKLKPQD 173
                         + +  ++  ++   +I LG   Y  + Q  K +E+    L    + 
Sbjct: 111 --------------YEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM 156

Query: 174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE 226
                + G ++  + +   A  + Q+ +   P+   A   +      +     
Sbjct: 157 QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKILRIEKEVNR 208

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 93.2 bits (233), Expect = 3e-24
 Identities = 41/109 (37%), Positives = 57/109 (52%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
              A+    LG  Y     YD+AIE +Q AL+L P +   W  LG          +AI  
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 197 YQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245
           YQ+AL+L PN   AW N+G +Y  QG Y+E++ YY +AL ++P    A 
Sbjct: 66  YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 76.3 bits (189), Expect = 8e-18
 Identities = 32/86 (37%), Positives = 43/86 (50%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
           P +A+    LG  Y     YD+AIE +Q AL+L P +   W  LG          +AI  
Sbjct: 40  PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 99

Query: 197 YQRALDLKPNYVRAWANMGISYANQG 222
           YQ+AL+L PN   A  N+G +   QG
Sbjct: 100 YQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 72.4 bits (179), Expect = 2e-16
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 169 LKPQDYS-LWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEES 227
           + P + +  W  LG          +AI  YQ+AL+L PN   AW N+G +Y  QG Y+E+
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

Query: 228 VRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
           + YY +AL ++P    AW  L  +    G Y
Sbjct: 63  IEYYQKALELDPNNAEAWYNLGNAYYKQGDY 93

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 99.2 bits (247), Expect = 5e-24
 Identities = 35/253 (13%), Positives = 72/253 (28%), Gaps = 29/253 (11%)

Query: 25  EAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE---------AEPTNL 75
           E  +    E       +    LL         ++ A+  + +A E         AE  +L
Sbjct: 35  EDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSL 94

Query: 76  EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARL------- 128
               +    + +    +    Y+        K+ +    E  +        RL       
Sbjct: 95  VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQN 154

Query: 129 ------FVEAARMSPEDADVHIVLG-VLYNLSRQ--YDKAIESFQTALKLKPQDYSLWNK 179
                 F +A    P++ +    L    Y L        AI+  + A++L P +  L   
Sbjct: 155 ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214

Query: 180 LGATQANSVQS----ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL 235
           L        +      +     + AL+  P       +    Y  +   ++++    +AL
Sbjct: 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274

Query: 236 AMNPKADNAWQYL 248
              P        +
Sbjct: 275 EYIPNNAYLHCQI 287

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 90.4 bits (224), Expect = 6e-21
 Identities = 46/272 (16%), Positives = 87/272 (31%), Gaps = 39/272 (14%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRL--------LGIAHAENDDDQ--QAIAA 63
               +  G LS+  + ++       + S  +R+         G    +   +Q  +A   
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVC 160

Query: 64  MMRAHEAEPTNLEVLLSLGVS---HTNELEQAAALKYLYGWLRHHPKY-------GTIAP 113
             +A E +P N E    L ++     N      A+  L   +R +P              
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220

Query: 114 PELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173
               +     +  +L  EA   +P   DV       Y    + DKAIE  + AL+  P +
Sbjct: 221 KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280

Query: 174 YSLWNKLG---ATQANSVQSA----------------DAILAYQRALDLKPNYVRAWANM 214
             L  ++G     +   V +                  A+   ++A +   N  R  + +
Sbjct: 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSIL 340

Query: 215 GISYANQGMYEESVRYYVRALAMNPKADNAWQ 246
              +A    YEE+  Y+ +  +          
Sbjct: 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 80.0 bits (197), Expect = 3e-17
 Identities = 42/277 (15%), Positives = 84/277 (30%), Gaps = 33/277 (11%)

Query: 18  FRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDD---DQQAIAAMMRAHEAEPTN 74
                   A +  E  + K P+N E    L IA    D+    Q AI  + +A    P N
Sbjct: 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208

Query: 75  LEVLLSLGVS----HTNELEQAAALKYLYGWLRHHPKYGTI---APPELSDSLYYADVAR 127
             + + L +          E+    K +   L   P    +   A               
Sbjct: 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIE 268

Query: 128 LFVEAARMSPEDADVHIVLGVLY-------------------NLSRQYDKAIESFQTALK 168
           L  +A    P +A +H  +G  Y                    L      A+   + A +
Sbjct: 269 LLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328

Query: 169 LKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA---NMG-ISYANQGMY 224
                + + + L +  A + Q  +A   +Q+    +   V         G          
Sbjct: 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388

Query: 225 EESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNR 261
           ++++ +++  + +N K+    +      + A    ++
Sbjct: 389 DKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSK 425

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 75.0 bits (184), Expect = 2e-15
 Identities = 37/255 (14%), Positives = 66/255 (25%), Gaps = 36/255 (14%)

Query: 20  KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLL 79
                E    +E  + K P  ++  R     +   D+  +AI  + +A E  P N  +  
Sbjct: 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285

Query: 80  SLGVSHTNELEQAAA-----------LKYLYGWLRHHPKYGTIAPPELSDSLY------- 121
            +G  +  ++ Q              L  L G    H K    A   L            
Sbjct: 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHA 345

Query: 122 ----YADVARLFVEAARMSPEDAD---VHIVLG-VLYNLSRQYDKAIESFQTALKLKPQD 173
               Y +    F +             +H+  G       +  DKAI  F   +K+  + 
Sbjct: 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405

Query: 174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR 233
                     Q             +  L        A   +          +++     R
Sbjct: 406 REKEKMKDKLQK----------IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455

Query: 234 ALAMNPKADNAWQYL 248
            L       +A  + 
Sbjct: 456 GLESGSLIPSASSWN 470

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 58.8 bits (142), Expect = 3e-10
 Identities = 18/159 (11%), Positives = 43/159 (27%), Gaps = 13/159 (8%)

Query: 118 DSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLW 177
           + L  A+       A +              +Y    +             +  +  S +
Sbjct: 72  ECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131

Query: 178 NKLGAT----------QANSVQSADAILAYQRALDLKPNYVRAWANMGISYA---NQGMY 224
                           +    Q+  A + +++AL+ KP      + + I+     N    
Sbjct: 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS 191

Query: 225 EESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD 263
           + ++    +A+ +NP        L + L           
Sbjct: 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEG 230

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 52.6 bits (126), Expect = 4e-08
 Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 11/166 (6%)

Query: 20  KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE--- 76
             L+  AV  L+     N        +L   HA  D  ++A     +    E T +    
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372

Query: 77  VLLSLGVSHTNELEQ-AAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARM 135
           + L  G     +++    A+ +    ++ + K       E           ++       
Sbjct: 373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS-----REKEKMKDKLQ--KIAKMRLSK 425

Query: 136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
           +  D++   VL  L  L+ +  +A E  +  L+      S  +  G
Sbjct: 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 19/144 (13%)

Query: 136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSL---------WNKLGATQAN 186
               A +  +L  L +L  Q + A+E  + A +L  Q+++          W        +
Sbjct: 47  REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH 106

Query: 187 SVQSADAILAYQRALDLKPNYVRAW--------ANMGISY--ANQGMYEESVRYYVRALA 236
             + +D  +   +   +   +   +           G +         E +   + +AL 
Sbjct: 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166

Query: 237 MNPKADNAWQYLRISLRYAGRYPN 260
             PK       L I+      +P 
Sbjct: 167 KKPKNPEFTSGLAIASYRLDNWPP 190

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 98.7 bits (245), Expect = 1e-23
 Identities = 29/139 (20%), Positives = 61/139 (43%)

Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
             +  RL+ +A  + PE A  H  L  +     +  +A+  ++ A+++ P     ++ +G
Sbjct: 25  IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84

Query: 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA 241
            T         A+  Y RA+ + P +  A +N+   + + G   E++  Y  AL + P  
Sbjct: 85  NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144

Query: 242 DNAWQYLRISLRYAGRYPN 260
            +A+  L   L+    + +
Sbjct: 145 PDAYCNLAHCLQIVCDWTD 163

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 97.2 bits (241), Expect = 5e-23
 Identities = 35/223 (15%), Positives = 78/223 (34%), Gaps = 31/223 (13%)

Query: 37  NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALK 96
            P +++    L     E  + ++A+    +A E  P       +L      + +   AL 
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 97  YLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQY 156
           +                               + EA R+SP  AD +  +G      +  
Sbjct: 65  H-------------------------------YKEAIRISPTFADAYSNMGNTLKEMQDV 93

Query: 157 DKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI 216
             A++ +  A+++ P      + L +   +S    +AI +Y+ AL LKP++  A+ N+  
Sbjct: 94  QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 153

Query: 217 SYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYP 259
                  + +      + +++        +   +   ++  YP
Sbjct: 154 CLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYP 196

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 96.4 bits (239), Expect = 8e-23
 Identities = 25/124 (20%), Positives = 57/124 (45%)

Query: 135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI 194
             P  AD    L  +       ++A+  ++ AL++ P+  +  + L +      +  +A+
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 195 LAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY 254
           + Y+ A+ + P +  A++NMG +       + +++ Y RA+ +NP   +A   L    + 
Sbjct: 64  MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123

Query: 255 AGRY 258
           +G  
Sbjct: 124 SGNI 127

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 74.5 bits (182), Expect = 3e-15
 Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 32/237 (13%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
                 +G + EAV      +   PE +     L     +    Q+A+     A    PT
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA 133
             +   ++G +     +   AL+                                +  A 
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQC-------------------------------YTRAI 104

Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
           +++P  AD H  L  ++  S    +AI S++TALKLKP     +  L           D 
Sbjct: 105 QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164

Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250
               ++ + +  + +     +   + +  M       + +A+A         +   +
Sbjct: 165 DERMKKLVSIVADQLEKN-RLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVL 220

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 66.4 bits (161), Expect = 1e-12
 Identities = 18/92 (19%), Positives = 40/92 (43%)

Query: 169 LKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESV 228
             P      N L   +       +A+  Y++AL++ P +  A +N+      QG  +E++
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 229 RYYVRALAMNPKADNAWQYLRISLRYAGRYPN 260
            +Y  A+ ++P   +A+  +  +L+       
Sbjct: 64  MHYKEAIRISPTFADAYSNMGNTLKEMQDVQG 95

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 56.4 bits (135), Expect = 3e-09
 Identities = 28/230 (12%), Positives = 68/230 (29%), Gaps = 32/230 (13%)

Query: 17  LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE 76
           L ++G L EA++  +  +  +P  ++ +  +G    E  D Q A+    RA +  P   +
Sbjct: 53  LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112

Query: 77  VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMS 136
              +L   H +      A+                                 +  A ++ 
Sbjct: 113 AHSNLASIHKDSGNIPEAIAS-------------------------------YRTALKLK 141

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
           P+  D +  L     +   +    E  +  + +   D    N+L +   +          
Sbjct: 142 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA-DQLEKNRLPSVHPHHSMLYPLSHG 200

Query: 197 YQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246
           +++A+  +   +       +        ++      R       +D    
Sbjct: 201 FRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNH 250

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 91.2 bits (227), Expect = 2e-22
 Identities = 36/229 (15%), Positives = 71/229 (31%), Gaps = 36/229 (15%)

Query: 36  KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL 95
           K  + S     L + +    D +QA A++  A +++P N    L     +        A 
Sbjct: 3   KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ 62

Query: 96  KYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLG-VLYNLSR 154
           +                                F +A  + P+ A+++   G  L     
Sbjct: 63  ES-------------------------------FRQALSIKPDSAEINNNYGWFLCGRLN 91

Query: 155 QYDKAIESFQTALK--LKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212
           +  +++  F  AL     P  Y      G   A   Q   A    +R+L  +P +  A+ 
Sbjct: 92  RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK 151

Query: 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNR 261
            +  +    G   ++  Y+ +  +           L +  + A    N 
Sbjct: 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQAD--DLLLGWKIAKALGNA 198

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 32/238 (13%), Positives = 75/238 (31%), Gaps = 32/238 (13%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
             E  R     +A  ++E  +  +P+N   W +    +     + +A  +  +A   +P 
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74

Query: 74  NLEVLLSLGVSHTNELEQ-AAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEA 132
           + E+  + G      L + A ++ Y              A   L+D  Y           
Sbjct: 75  SAEINNNYGWFLCGRLNRPAESMAYF-----------DKA---LADPTY----------- 109

Query: 133 ARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192
               P     ++  G+      Q+  A    + +L  +PQ    + +L  T+  + Q  D
Sbjct: 110 ----PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165

Query: 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250
           A   +++             ++ + +        +   Y     +      + +   +
Sbjct: 166 ADYYFKKYQSRVEVL--QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 9/57 (15%), Positives = 17/57 (29%)

Query: 202 DLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
           +           + + Y     Y ++      AL  +PK + AW       +Y    
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVN 58

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 91.6 bits (228), Expect = 2e-22
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 2/132 (1%)

Query: 129 FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSV 188
            ++  +   E  D +I LG+ Y      ++A    + AL++ P        L       +
Sbjct: 26  PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM 85

Query: 189 QSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM--NPKADNAWQ 246
           +   A   Y++AL       R   N G     Q  YEE+ +  + A      P+    ++
Sbjct: 86  EPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFE 145

Query: 247 YLRISLRYAGRY 258
            L +      + 
Sbjct: 146 NLGLVSLQMKKP 157

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 89.2 bits (222), Expect = 2e-21
 Identities = 33/224 (14%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 37  NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALK 96
             E  + +  LG+ + +  + +QA   + +A E +P++ +   +L V    E+E   A +
Sbjct: 33  RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADE 92

Query: 97  YLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQY 156
                                           + +A      +A V    G      ++Y
Sbjct: 93  E-------------------------------YRKALASDSRNARVLNNYGGFLYEQKRY 121

Query: 157 DKAIESFQTALK--LKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM 214
           ++A +    A +  L P+   ++  LG       + A A   ++++L L  N       M
Sbjct: 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEM 181

Query: 215 GISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
                 +  Y  + +YY        +   +        +     
Sbjct: 182 ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDR 225

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 88.9 bits (221), Expect = 3e-21
 Identities = 34/236 (14%), Positives = 75/236 (31%), Gaps = 29/236 (12%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G    ++G   +A + L   +  +P +++    L +      + + A     +A  ++  
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA 133
           N  VL + G     +     A + L             A     D+LY            
Sbjct: 104 NARVLNNYGGFLYEQKRYEEAYQRL-----------LEA---SQDTLY------------ 137

Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
              PE + V   LG++    ++  +A E F+ +L+L     S+  ++        +   A
Sbjct: 138 ---PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194

Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249
              Y           R+              + +  Y ++   + P +    ++  
Sbjct: 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 3/124 (2%)

Query: 135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI 194
           M       H   G++    R      ++     K + +    + +LG        +  A 
Sbjct: 1   MGSSHHHHHHSSGLVP---RGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57

Query: 195 LAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY 254
           +  ++AL++ P+   A A + + +  +   + +   Y +ALA + +           L  
Sbjct: 58  VPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117

Query: 255 AGRY 258
             RY
Sbjct: 118 QKRY 121

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 89.2 bits (221), Expect = 5e-22
 Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
                +   +  R +P++++   +LG  Y     Y  ++ +++ AL+L+ ++  L+  L 
Sbjct: 26  PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALA 85

Query: 182 ---ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMN 238
                QA+   +A       +AL L  N + A   +      Q  Y +++  + + + +N
Sbjct: 86  TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145

Query: 239 PKADNAWQYLR 249
               N  Q + 
Sbjct: 146 SPRINRTQLVE 156

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 68.0 bits (166), Expect = 4e-14
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM 214
             +  +++ Q  ++  PQ+   W  LG         ++++LAY++AL L+      +A +
Sbjct: 25  NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL 84

Query: 215 GISY---ANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYP 259
                  A+Q M  ++     +ALA++     A   L         Y 
Sbjct: 85  ATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 26/166 (15%), Positives = 52/166 (31%), Gaps = 28/166 (16%)

Query: 8   PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRA 67
                   +   +      + AL+ ++  NP+NSE W LLG  +   +D   ++ A  +A
Sbjct: 11  QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70

Query: 68  HEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVAR 127
            +    N E+  +L                                   +     A    
Sbjct: 71  LQLRGENAELYAALATVLY----------------------------YQASQHMTAQTRA 102

Query: 128 LFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173
           +  +A  +   +    ++L     +   Y +AIE +Q  + L    
Sbjct: 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 18/88 (20%), Positives = 28/88 (31%)

Query: 171 PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRY 230
             +Y          A+       + A Q  +   P     WA +G  Y  Q  Y  S+  
Sbjct: 7   RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66

Query: 231 YVRALAMNPKADNAWQYLRISLRYAGRY 258
           Y +AL +  +    +  L   L Y    
Sbjct: 67  YRQALQLRGENAELYAALATVLYYQASQ 94

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 87.1 bits (217), Expect = 5e-22
 Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 2/108 (1%)

Query: 135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI 194
           M  ++ + + + GVL   +  Y ++I+ F+ A++L P++   W   G    N  +  +A+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 195 LAYQRALDLKPNY--VRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
             Y   +++  +      WA    +       E           +   
Sbjct: 61  DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 67.5 bits (166), Expect = 1e-14
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 171 PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRY 230
            Q+   +   G  Q ++    ++I  +++A+ L P   + W   G +  N   YEE+V  
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62

Query: 231 YVRALAMNP--KADNAWQYLRISLRYAGRY 258
           Y   + +       + W     +LRY    
Sbjct: 63  YNYVINVIEDEYNKDVWAAKADALRYIEGK 92

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 37.8 bits (89), Expect = 5e-04
 Identities = 17/145 (11%), Positives = 37/145 (25%), Gaps = 43/145 (29%)

Query: 37  NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN--ELEQA-- 92
             +N E + L G+   +  +  ++I    +A + +P   +  L  G +  N    E+A  
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61

Query: 93  ---AALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVL 149
                +               +                           + DV       
Sbjct: 62  CYNYVIN--------------VIE----------------------DEYNKDVWAAKADA 85

Query: 150 YNLSRQYDKAIESFQTALKLKPQDY 174
                  +   E  +   KL+   +
Sbjct: 86  LRYIEGKEVEAEIAEARAKLEHHHH 110

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 87.5 bits (217), Expect = 7e-22
 Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 3/134 (2%)

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS 190
               +S +  +    LG     + ++D A + FQ    L   D   +  LGA + +    
Sbjct: 9   MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY 68

Query: 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM---NPKADNAWQY 247
             A+ +Y     +  N  R   +    +   G  + +   +  A A+    P  +     
Sbjct: 69  EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128

Query: 248 LRISLRYAGRYPNR 261
               L       +R
Sbjct: 129 AGAMLEAVTARKDR 142

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 69.4 bits (170), Expect = 4e-15
 Identities = 16/97 (16%), Positives = 30/97 (30%)

Query: 162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ 221
           +      L          LG  Q  + +  DA   +Q    L     R +  +G    + 
Sbjct: 6   TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65

Query: 222 GMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
           G+YE++++ Y     M+        +        G  
Sbjct: 66  GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 60.5 bits (147), Expect = 7e-12
 Identities = 12/86 (13%), Positives = 25/86 (29%)

Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
           + D  ++F     +   DA   + LG        Y++A++S+     +   +        
Sbjct: 34  WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93

Query: 182 ATQANSVQSADAILAYQRALDLKPNY 207
                      A   +  A  L    
Sbjct: 94  ECHLQLGDLDGAESGFYSARALAAAQ 119

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 20/149 (13%), Positives = 34/149 (22%), Gaps = 34/149 (22%)

Query: 37  NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALK 96
           + +  E    LG    +      A          +  +    L LG    +      AL+
Sbjct: 14  SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQ 73

Query: 97  YLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQY 156
                                           +   A M   +          +      
Sbjct: 74  S-------------------------------YSYGALMDINEPRFPFHAAECHLQLGDL 102

Query: 157 DKAIESFQTALKL---KPQDYSLWNKLGA 182
           D A   F +A  L   +P   +L  + GA
Sbjct: 103 DGAESGFYSARALAAAQPAHEALAARAGA 131

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 3/102 (2%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G   ++ G   +A    +A  + +  ++  +  LG         +QA+ +       +  
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84

Query: 74  NLEVLLSLGVSHT--NELEQA-AALKYLYGWLRHHPKYGTIA 112
                      H    +L+ A +            P +  +A
Sbjct: 85  EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 90.5 bits (224), Expect = 6e-21
 Identities = 40/252 (15%), Positives = 81/252 (32%), Gaps = 37/252 (14%)

Query: 20  KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAE-NDDDQQAIAAMMRAHEAEPTNLEVL 78
           +  + + +  +E  +      ++   L G A     D   +A   + +A + EP  +E  
Sbjct: 81  QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140

Query: 79  LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY-YADVARLFVEAARMSP 137
             LG  +  + +  +A     G L H              SL   + V R          
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKNK---------VSLQNLSMVLR---------- 181

Query: 138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSA------ 191
                 +        SR    ++   + A+++   D   W  LG    +   +       
Sbjct: 182 -----QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI 236

Query: 192 --DAILAYQRALDLK---PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246
              A+ AY +A  +     +      N    +  +  Y E++  + +A A++P      Q
Sbjct: 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQ 296

Query: 247 YLRISLRYAGRY 258
             +  L +  R 
Sbjct: 297 REQQLLEFLSRL 308

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 83.1 bits (205), Expect = 3e-18
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 151 NLSRQYDKAIESFQTALKLKPQDYSLWNKLG-ATQANSVQSADAILAYQRALDLKPNYVR 209
           ++  + +K ++  +  L     +       G A       S +A +   +A+ L+P  V 
Sbjct: 79  DVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE 138

Query: 210 AWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPN 260
           AW  +G  Y  +G    +   +  AL        + Q L + LR       
Sbjct: 139 AWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV-SLQNLSMVLRQLQTDSG 188

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 91.2 bits (226), Expect = 6e-21
 Identities = 25/247 (10%), Positives = 52/247 (21%), Gaps = 15/247 (6%)

Query: 21  GLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS 80
             +   +  L       P+               +  Q+ +  + + H   P  +  + S
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468

Query: 81  LGVSHTN---------ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVE 131
                            L QA  L                             +  +  +
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVA--IASNIGG----KQALATVQRLLPVLCQ 522

Query: 132 AARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSA 191
           A  ++P+        G          + +     A  L P         G  +       
Sbjct: 523 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 582

Query: 192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS 251
             +    +A  L    V A A+           +  +    +A  + P    A       
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG 642

Query: 252 LRYAGRY 258
            +     
Sbjct: 643 KQALETV 649

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 90.1 bits (223), Expect = 1e-20
 Identities = 23/222 (10%), Positives = 47/222 (21%), Gaps = 31/222 (13%)

Query: 37  NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALK 96
            P                +  Q+ +  + +AH   P  +  + S        LE      
Sbjct: 188 TPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGK-QALET----- 241

Query: 97  YLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQY 156
                                       +  +  +A  + P+                  
Sbjct: 242 -------------------------MQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETV 276

Query: 157 DKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI 216
            + +     A  L P         G  +         +    +A  L P+ V A A+   
Sbjct: 277 QRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDG 336

Query: 217 SYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
                   +  +    +A  + P    A        +     
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 378

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 85.5 bits (211), Expect = 5e-19
 Identities = 25/248 (10%), Positives = 55/248 (22%), Gaps = 3/248 (1%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G        +   +  L       P+        G      +  Q+ +  + +AH     
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQV 597

Query: 74  NLEVLLSLGVSH---TNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFV 130
            +  + S                 L   +G                        +  +  
Sbjct: 598 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLC 657

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS 190
           +A  ++P+        G          + +     A  L  +           +      
Sbjct: 658 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETV 717

Query: 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250
              +    +A  L P+ V A A+ G         +  +    +A  + P    A      
Sbjct: 718 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIG 777

Query: 251 SLRYAGRY 258
             +     
Sbjct: 778 GKQALETV 785

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 84.3 bits (208), Expect = 1e-18
 Identities = 25/247 (10%), Positives = 55/247 (22%), Gaps = 36/247 (14%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
                    +   +  L       P+               +  Q+ +  + +AH   P 
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPD 292

Query: 74  NLEVLLSLGVSHTN--ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVE 131
            +  + S G        +++   +                                   +
Sbjct: 293 QVVAIASHGGGKQALETVQRLLPV---------------------------------LCQ 319

Query: 132 AARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSA 191
           A  ++P+                   + +     A  L P         G  +       
Sbjct: 320 AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 379

Query: 192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS 251
             +    +A  L P+ V A A+ G   A     +  +    +A  + P    A       
Sbjct: 380 RLLPVLCQAHGLTPDQVVAIASNGGKQA-LETVQRLLPVLCQAHGLTPDQVVAIASHDGG 438

Query: 252 LRYAGRY 258
            +     
Sbjct: 439 KQALETV 445

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 82.0 bits (202), Expect = 7e-18
 Identities = 24/245 (9%), Positives = 52/245 (21%), Gaps = 31/245 (12%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
                    +   +  L       P+        G      +  Q+ +  + +AH   P 
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA 133
            +  + S G      LE                                  +  +  +A 
Sbjct: 564 QVVAIASNGGGK-QALET------------------------------VQRLLPVLCQAH 592

Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
            ++                     + +     A  L P            +         
Sbjct: 593 GLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRL 652

Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLR 253
           +    +A  L P+ V A A+ G         +  +    +A  +  +   A        +
Sbjct: 653 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQ 712

Query: 254 YAGRY 258
                
Sbjct: 713 ALETV 717

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 82.0 bits (202), Expect = 7e-18
 Identities = 26/251 (10%), Positives = 51/251 (20%), Gaps = 9/251 (3%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
                    +   +  L       P                +  QQ +  + +AH   P 
Sbjct: 436 DGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPD 495

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGT------IAPPELSDSLYYADVAR 127
            +  + S              L  L       P               L        +  
Sbjct: 496 QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET---VQRLLP 552

Query: 128 LFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANS 187
           +  +A  ++P+        G          + +     A  L              +   
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQAL 612

Query: 188 VQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY 247
                 +    +A  L P  V A A+           +  +    +A  + P    A   
Sbjct: 613 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 672

Query: 248 LRISLRYAGRY 258
                +     
Sbjct: 673 NGGGKQALETV 683

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 74.7 bits (183), Expect = 2e-15
 Identities = 25/256 (9%), Positives = 52/256 (20%), Gaps = 19/256 (7%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G        +   +  L                        +  Q+ +  + +AH   P 
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631

Query: 74  NLEVLLSLGVSH---------TNELEQAAALK--YLYGWLRHHPKYGTIAPPELSDSLYY 122
            +  + S                 L QA  L    +     +           L      
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG-----GGKQALET---V 683

Query: 123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGA 182
             +  +  +A  ++ E                   + +     A  L P         G 
Sbjct: 684 QRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 743

Query: 183 TQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242
            +         +    +A  L P  V A A+           +  +    +   +     
Sbjct: 744 GKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQV 803

Query: 243 NAWQYLRISLRYAGRY 258
            A        +     
Sbjct: 804 VAIASNIGGKQALETV 819

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.1 bits (166), Expect = 3e-13
 Identities = 24/256 (9%), Positives = 54/256 (21%), Gaps = 19/256 (7%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
                    +   +  L       P                +  Q+ +  + +AH   P 
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 665

Query: 74  NLEVLLSLGVSH---------TNELEQAAALK--YLYGWLRHHPKYGTIAPPELSDSLYY 122
            +  + S G               L QA  L    +     ++     +           
Sbjct: 666 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALE--------TV 717

Query: 123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGA 182
             +  +  +A  ++P+        G          + +     A  L P           
Sbjct: 718 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIG 777

Query: 183 TQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242
            +         +    +   L    V A A+           +  +    +A  +     
Sbjct: 778 GKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQV 837

Query: 243 NAWQYLRISLRYAGRY 258
            A        +     
Sbjct: 838 VAIASNIGGKQALETV 853

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.5 bits (141), Expect = 6e-10
 Identities = 30/235 (12%), Positives = 63/235 (26%), Gaps = 11/235 (4%)

Query: 21  GLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS 80
             +   +  L        E               +  Q+ +  + +AH   P  +  + S
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740

Query: 81  LGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDA 140
            G            L  L       P         ++ ++              +  +D 
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVV----AIASNIGGKQALETVQRLLPVLCQDH 796

Query: 141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA 200
            + +   V    +    +A+E+ Q  L +  Q + L        A+++    A+   QR 
Sbjct: 797 GLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRL 856

Query: 201 LD-------LKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL 248
           L        L P+ V A A+           +  +    +   +      A    
Sbjct: 857 LPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASN 911

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.1 bits (140), Expect = 9e-10
 Identities = 20/235 (8%), Positives = 50/235 (21%), Gaps = 4/235 (1%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G        +   +  L       P                +  Q+ +  + + H     
Sbjct: 742 GGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLA 801

Query: 74  NLEVLLSLGVSHTN--ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVA-RLFV 130
            +  + S          +++   +      L         +      +L        +  
Sbjct: 802 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLC 861

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS 190
           +   ++P+                   + +        L           G  QA     
Sbjct: 862 QDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQALE-TV 920

Query: 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245
              +    +   L P+ V A A+           +  +    +   + P    A 
Sbjct: 921 QRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAI 975

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 36/200 (18%), Positives = 69/200 (34%), Gaps = 11/200 (5%)

Query: 50   AHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYG 109
            A A N   +QA+  + R          +     V+  + +    AL+ +   L    +  
Sbjct: 805  AIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDH 864

Query: 110  TIAPPE---LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA 166
             + P +   ++ ++              +  +D  + +   V    S    +A+E+ Q  
Sbjct: 865  GLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAI-ASNGGKQALETVQRL 923

Query: 167  LKLKPQDYSLWNKLGATQANSVQSADAILAYQRALD-------LKPNYVRAWANMGISYA 219
            L +  QD+ L        A++     A+   QR L        L PN V A A+ G   A
Sbjct: 924  LPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQA 983

Query: 220  NQGMYEESVRYYVRALAMNP 239
             + +  +  R      A+  
Sbjct: 984  LESIVAQLSRPDPALAALTN 1003

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 21/193 (10%), Positives = 42/193 (21%), Gaps = 2/193 (1%)

Query: 25   EAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVS 84
              +  L        +               +  Q+ +  + + H   P  +  + S    
Sbjct: 821  RLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGG 880

Query: 85   HTN-ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARL-FVEAARMSPEDADV 142
                E  Q               +   IA      +L           +   ++P+    
Sbjct: 881  KQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVVA 940

Query: 143  HIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALD 202
                           + +        L P         G  QA     A           
Sbjct: 941  IASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALAA 1000

Query: 203  LKPNYVRAWANMG 215
            L  +++ A A +G
Sbjct: 1001 LTNDHLVALACLG 1013

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 81.7 bits (202), Expect = 6e-19
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI 194
           MS  +A      GVL    + +  A+++F     ++     +   +G          +A 
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAE 57

Query: 195 LAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA-MNPKADNAWQYL--RIS 251
            A+ R+++   +   A+   G+ Y     Y+ +++    AL  +       ++ L  +  
Sbjct: 58  KAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK 117

Query: 252 LRYAGRYPNRGDIF 265
           L       N   ++
Sbjct: 118 LFACEVLYNIAFMY 131

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 16/124 (12%), Positives = 44/124 (35%), Gaps = 16/124 (12%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
              + +   +G +Y + +   +A ++F  ++         + + G     + +   AI  
Sbjct: 34  DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD 93

Query: 197 YQRAL-DLKPNYVRA---------------WANMGISYANQGMYEESVRYYVRALAMNPK 240
            + AL  L+ N +                   N+   YA +  ++++      A +M  +
Sbjct: 94  LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153

Query: 241 ADNA 244
             ++
Sbjct: 154 PRHS 157

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 27/196 (13%), Positives = 52/196 (26%), Gaps = 30/196 (15%)

Query: 13  EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP 72
           EG     K     A+ A  A       +S     +G  +    +  +A  A  R+   + 
Sbjct: 12  EGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 73  TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEA 132
                    G+ +    +   A+K L   L        I    L                
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL---------------G 113

Query: 133 ARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192
            +      +V   +  +Y    ++ KA E    A  +K +                +   
Sbjct: 114 LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDK 161

Query: 193 AILAYQRALDLKPNYV 208
           A+    +    +P  +
Sbjct: 162 AMECVWKQKLYEPVVI 177

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 79.5 bits (196), Expect = 1e-18
 Identities = 12/109 (11%), Positives = 27/109 (24%)

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS 190
           +   +  +  D        +    + ++A   F+        +      L A      Q 
Sbjct: 27  DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86

Query: 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
             A   Y  A  L  N      + G          ++   +   +  + 
Sbjct: 87  QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 7/104 (6%), Positives = 24/104 (23%)

Query: 155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM 214
               +  + +    +                N  +  +A + ++         V     +
Sbjct: 17  DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL 76

Query: 215 GISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
              Y  +  ++++   Y  A A+         +           
Sbjct: 77  AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 58.3 bits (141), Expect = 7e-11
 Identities = 13/85 (15%), Positives = 27/85 (31%)

Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
             +    F         + D  + L  +Y +  Q+ +A + +  A  L   DY+     G
Sbjct: 52  IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111

Query: 182 ATQANSVQSADAILAYQRALDLKPN 206
             Q        A   ++  +    +
Sbjct: 112 QCQLRLKAPLKAKECFELVIQHSND 136

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 2/81 (2%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
             + + KG + EA +      + +  N +    L   +   +  QQA      A      
Sbjct: 43  AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102

Query: 74  NLEVLLSLGVSH--TNELEQA 92
           +   +   G          +A
Sbjct: 103 DYTPVFHTGQCQLRLKAPLKA 123

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 14/163 (8%), Positives = 36/163 (22%), Gaps = 33/163 (20%)

Query: 11  LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA 70
            +         + S A L     +    +  +               ++A          
Sbjct: 8   NESISTAVIDAINSGATLKDINAI--PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY 65

Query: 71  EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFV 130
           +  N++ ++ L   +  + +   A                                  + 
Sbjct: 66  DFYNVDYIMGLAAIYQIKEQFQQAADL-------------------------------YA 94

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173
            A  +   D       G      +   KA E F+  ++    +
Sbjct: 95  VAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 77.3 bits (190), Expect = 6e-18
 Identities = 20/124 (16%), Positives = 32/124 (25%)

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS 190
               +S +  +    L      S  Y+ A   FQ    L   D   +  LGA +    Q 
Sbjct: 12  MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY 71

Query: 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250
             AI +Y     +     R   +        G   E+      A  +        +    
Sbjct: 72  DLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTR 131

Query: 251 SLRY 254
               
Sbjct: 132 VSSM 135

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 71.9 bits (176), Expect = 7e-16
 Identities = 15/111 (13%), Positives = 26/111 (23%)

Query: 155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM 214
                  +     ++          L   Q  S    DA   +Q    L     R +  +
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 215 GISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265
           G      G Y+ ++  Y     M+        +    L   G         
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGL 112

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 58.0 bits (140), Expect = 8e-11
 Identities = 17/94 (18%), Positives = 27/94 (28%)

Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
           Y D   +F     +   D+   + LG       QYD AI S+     +   +        
Sbjct: 37  YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96

Query: 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMG 215
                  + A+A      A +L  N         
Sbjct: 97  ECLLQXGELAEAESGLFLAQELIANXPEFXELST 130

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 12/85 (14%), Positives = 22/85 (25%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
               ++ G   +A    +A  + +  +S  +  LG           AI +       +  
Sbjct: 28  AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87

Query: 74  NLEVLLSLGVSHTNELEQAAALKYL 98
                           E A A   L
Sbjct: 88  EPRFPFHAAECLLQXGELAEAESGL 112

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 14/152 (9%), Positives = 29/152 (19%), Gaps = 31/152 (20%)

Query: 21  GLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS 80
           G L      +      + +  E    L     ++   + A          +  +    L 
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 81  LGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDA 140
           LG       +   A+                                 +   A M   + 
Sbjct: 61  LGACRQAMGQYDLAIHS-------------------------------YSYGAVMDIXEP 89

Query: 141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ 172
                         +  +A      A +L   
Sbjct: 90  RFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 76.5 bits (189), Expect = 8e-18
 Identities = 26/123 (21%), Positives = 55/123 (44%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
             +A+     G        ++ A+  +  A++L P +   +    A  +     A A+  
Sbjct: 9   SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQD 68

Query: 197 YQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG 256
            +RA+ + P Y +A+  MG++ ++   + E+V YY +AL ++P  +     L+I+     
Sbjct: 69  CERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128

Query: 257 RYP 259
             P
Sbjct: 129 EAP 131

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 75.1 bits (185), Expect = 2e-17
 Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 2/103 (1%)

Query: 157 DKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI 216
               E  +  L     +  L   LG T A   Q   A+   + ALD  P Y  AW  +G 
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 217 SYANQGMYEESVRYYVRALAMNPKADNAWQY--LRISLRYAGR 257
           +   QG    + + +   LA      +      L++ LR   R
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 2/103 (1%)

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS 190
                  ++  +   LG  Y    Q+D A+   + AL   P     W  LG T       
Sbjct: 10  AMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR 69

Query: 191 ADAILAYQRALDLKPNY--VRAWANMGISYANQGMYEESVRYY 231
           A A  A++  L    +    +    + +        +    ++
Sbjct: 70  AGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 60.0 bits (146), Expect = 7e-12
 Identities = 12/67 (17%), Positives = 27/67 (40%)

Query: 192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS 251
                 +  L    + +     +G +YA    ++ ++ +   AL  +P    AW++L  +
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 252 LRYAGRY 258
           L+  G  
Sbjct: 63  LQGQGDR 69

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 13/61 (21%), Positives = 19/61 (31%)

Query: 14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
          G+          A+  L A +  +P  S  W+ LG       D   A  A      A  +
Sbjct: 26 GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85

Query: 74 N 74
           
Sbjct: 86 R 86

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 74.0 bits (183), Expect = 2e-17
 Identities = 31/86 (36%), Positives = 41/86 (47%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
              A+    LG  Y     YD+AIE +Q AL+L P +   W  LG          +AI  
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 197 YQRALDLKPNYVRAWANMGISYANQG 222
           YQ+AL+L PN   A  N+G +   QG
Sbjct: 66  YQKALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 67.8 bits (167), Expect = 5e-15
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 169 LKPQDYSL-WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEES 227
           + P + +  W  LG          +AI  YQ+AL+L PN   AW N+G +Y  QG Y+E+
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

Query: 228 VRYYVRALAMNPKADNAW 245
           + YY +AL ++P    A 
Sbjct: 63  IEYYQKALELDPNNAEAK 80

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 77.4 bits (190), Expect = 1e-16
 Identities = 16/145 (11%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 121 YYADVARLFVEAARMSPEDADVHIVLG-VLYNLSRQYDKAIESFQTALKLKPQDYSLWNK 179
                 +L  +A  ++  +  V      +L +L +   + +      ++ +P++Y +W+ 
Sbjct: 112 RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171

Query: 180 LGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
                      +  +      L+       AW +         +++  ++Y  + L  + 
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231

Query: 240 KADNAWQYLRISLRYAGRYPNRGDI 264
           + ++ W      +     Y +R  +
Sbjct: 232 RNNSVWNQRYFVISNTTGYNDRAVL 256

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 67.8 bits (165), Expect = 3e-13
 Identities = 21/161 (13%), Positives = 58/161 (36%), Gaps = 8/161 (4%)

Query: 99  YGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDK 158
           Y   R   ++  I P   +D           V     S +  DV+     +     + ++
Sbjct: 63  YVLYRDRAEWADIDPVPQND-------GPNPVVQIIYSDKFRDVYDYFRAVLQRDERSER 115

Query: 159 AIESFQTALKLKPQDYSLWNKLGAT-QANSVQSADAILAYQRALDLKPNYVRAWANMGIS 217
           A +  + A++L   +Y++W+      ++      + +      ++ +P   + W +  + 
Sbjct: 116 AFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175

Query: 218 YANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
                   + + +    L  + K  +AWQ+ +  ++    +
Sbjct: 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 59.7 bits (144), Expect = 2e-10
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 6/136 (4%)

Query: 127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN 186
                     P++  V     VL    R   + +E     L    ++Y  W         
Sbjct: 153 NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212

Query: 187 SVQSADAILAYQRALDLKPNYVRAWANMGI------SYANQGMYEESVRYYVRALAMNPK 240
                + +    + L         W            Y ++ + E  V+Y +  + + P 
Sbjct: 213 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 272

Query: 241 ADNAWQYLRISLRYAG 256
            ++AW YL+  L+  G
Sbjct: 273 NESAWNYLKGILQDRG 288

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 55.8 bits (134), Expect = 3e-09
 Identities = 33/248 (13%), Positives = 74/248 (29%), Gaps = 42/248 (16%)

Query: 20  KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLL 79
           +  L E +  + A + + P+N + W    +      D  Q +  +      +  N     
Sbjct: 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204

Query: 80  SLG--VSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSP 137
                +      +    L+Y+   L+              ++  +     +         
Sbjct: 205 HRQWVIQEFKLWDNE--LQYVDQLLKEDV----------RNNSVWNQRYFVISNTTG--- 249

Query: 138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAY 197
                       YN     ++ ++     +KL P + S WN L     +   S       
Sbjct: 250 ------------YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLS-KYPNLL 296

Query: 198 QRALDLKPNYVRAWANMGI----SYANQGMYEESVRYYVRALAMNP----KAD----NAW 245
            + LDL+P++   +    +        +   +       +AL +      + D      W
Sbjct: 297 NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYW 356

Query: 246 QYLRISLR 253
           +Y+  SL+
Sbjct: 357 RYIGRSLQ 364

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 51.6 bits (123), Expect = 7e-08
 Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 1/96 (1%)

Query: 166 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG-ISYANQGMY 224
            +    +   +++   A      +S  A    + A++L       W     +  + Q   
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 225 EESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPN 260
            E + Y    +   PK    W + R+ + +      
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 184

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 69.6 bits (171), Expect = 2e-15
 Identities = 18/115 (15%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
            + A     LG      + ++KA   +  A++L P + + +N   A      + A+ +  
Sbjct: 5   TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64

Query: 197 YQRALDLKPN-------YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244
            ++A+++            +A +  G ++  Q     +V+++ R+L+     +  
Sbjct: 65  CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 67.4 bits (165), Expect = 1e-14
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 3/98 (3%)

Query: 155 QYDKAIESFQTALKLK---PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW 211
              +A+  ++ A+            +  LG+T     +   A       +   PN+    
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 212 ANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249
               +   N G YE+ V   ++ +A     +    Y +
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 60.1 bits (146), Expect = 7e-12
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 189 QSADAILAYQRALDLK---PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245
             A A+  Y++A+       +    +  +G ++   G Y ++       +   P      
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 246 QYLRISLRYAGRY 258
            +  + L   GRY
Sbjct: 65  VFYAMVLYNLGRY 77

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 15/118 (12%), Positives = 37/118 (31%), Gaps = 19/118 (16%)

Query: 130 VEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ 189
           + +     + A+ ++ LG  +    +Y KA       +K  P   +L         N  +
Sbjct: 17  IASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR 76

Query: 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA-DNAWQ 246
               +    + +    +                  +E+++ Y +A+       D  W+
Sbjct: 77  YEQGVELLLKIIAETSD------------------DETIQSYKQAILFYADKLDETWK 116

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 65.0 bits (159), Expect = 6e-14
 Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL 195
            PED      L   +       +A+  F+  ++  P     +  LG       ++ DAI 
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 196 AYQRALDLKPNYVRAWA--NMGISYANQGMYEESVRYY 231
            Y + +++            +  +       E    ++
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 63.1 bits (154), Expect = 4e-13
 Identities = 10/74 (13%), Positives = 30/74 (40%)

Query: 171 PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRY 230
           P+D      L         ++ A+  ++  ++  P+YV  + ++G  Y      ++++  
Sbjct: 4   PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63

Query: 231 YVRALAMNPKADNA 244
           Y + + +  +    
Sbjct: 64  YAQGIEVAREEGTQ 77

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 20/119 (16%), Positives = 50/119 (42%)

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS 190
             + M+P+ A +    G        Y +A++ +  A+K  P+D  L++   A     ++ 
Sbjct: 7   HHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF 66

Query: 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249
             A+   +  + L+P +++ +     +      Y +++  Y +AL ++     A    +
Sbjct: 67  QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQ 125

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 67.5 bits (164), Expect = 2e-13
 Identities = 29/254 (11%), Positives = 68/254 (26%), Gaps = 6/254 (2%)

Query: 9   NPLKEGQELFRKGLLSEAVLALEAEVLKNPENS-EGWRLLGIAHAENDDDQQAIAAMMRA 67
           + L + +  F  G   + +   +     +PE   E    L  A+         +      
Sbjct: 1   DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLD---EI 57

Query: 68  HEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVAR 127
             +    L+ +        +   + A +  L   +             ++ S+Y+ D   
Sbjct: 58  KPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117

Query: 128 LFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG--ATQA 185
                     +  +   +   +     + D A +  +                   +  A
Sbjct: 118 DAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAA 177

Query: 186 NSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245
              +  DA   +Q   D     +         +  QG +E +      AL  +       
Sbjct: 178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237

Query: 246 QYLRISLRYAGRYP 259
             L +  ++ G+ P
Sbjct: 238 INLVVLSQHLGKPP 251

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 67.1 bits (163), Expect = 3e-13
 Identities = 33/218 (15%), Positives = 60/218 (27%), Gaps = 6/218 (2%)

Query: 23  LSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAM--MRAHEAEPTNLEVLLS 80
             +  + L+     +    +  R+     A +      +A +    +   + TN   LL 
Sbjct: 47  QRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLM 106

Query: 81  LGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDA 140
               +  +    AAL+ L+          T+      D L  A   +   +      +  
Sbjct: 107 AASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLAR--KELKKMQDQDEDAT 164

Query: 141 DVHIVLGV--LYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQ 198
              +      L     +   A   FQ           L N   A      +   A    Q
Sbjct: 165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224

Query: 199 RALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236
            ALD    +     N+ +   + G   E    Y+  L 
Sbjct: 225 EALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 64.4 bits (157), Expect = 4e-13
 Identities = 19/92 (20%), Positives = 40/92 (43%)

Query: 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212
            ++Y KAI+ +  AL + P +    +   A  + S Q   A    + A  + P Y +AW+
Sbjct: 24  RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83

Query: 213 NMGISYANQGMYEESVRYYVRALAMNPKADNA 244
            +G++  +   Y+ +   Y + +       + 
Sbjct: 84  RLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 21/106 (19%), Positives = 46/106 (43%)

Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
           Y+    L+ +A  ++P +          Y+ S Q++KA E  + A  + P+    W++LG
Sbjct: 27  YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86

Query: 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEES 227
             + +      A  AY++ ++ + N        G+    + + E +
Sbjct: 87  LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN 132

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 17/68 (25%), Positives = 30/68 (44%)

Query: 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250
           + AI  Y +AL + P      +N   +Y+  G +E++      A  ++PK   AW  L +
Sbjct: 28  SKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87

Query: 251 SLRYAGRY 258
           +      Y
Sbjct: 88  ARFDMADY 95

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 17/99 (17%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN------ 206
            + +D A++ +  A +L P + +      A               ++A+++         
Sbjct: 17  KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76

Query: 207 -YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244
              +A+A +G SY  +  Y++++ +Y ++LA +   D  
Sbjct: 77  QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 115

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 10/108 (9%)

Query: 146 LGVLYNLSRQYDKAIESFQTALKLKPQDY----SLWNKLGATQANSVQSADAILAYQRAL 201
            G     +      +  FQ A++   +D     +++++LG           A+  ++  L
Sbjct: 54  EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113

Query: 202 DL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243
            L      +    ++  N+G +    G ++E+     R L +  +  +
Sbjct: 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD 161

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 38/212 (17%), Positives = 63/212 (29%), Gaps = 32/212 (15%)

Query: 47  LGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYL---YGWLR 103
           LG          +A     R        L +   LG    + L +  AL  L   Y    
Sbjct: 132 LGNTLKVMGRFDEAAICCERH-------LTLARQLG----DRLSEGRALYNLGNVYHAKG 180

Query: 104 HHPKYGTIAPPELSDSLYYADVARLFVEAARMS------PEDADVHIVLGVLYNLSRQYD 157
            H                       + E  ++                LG  Y L   + 
Sbjct: 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240

Query: 158 KAIESFQTALKLKPQDY------SLWNKLGATQANSVQSADAILAYQRALDL------KP 205
            AIE  Q  L++  +           + LG +     Q  DA   Y+R L L      + 
Sbjct: 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300

Query: 206 NYVRAWANMGISYANQGMYEESVRYYVRALAM 237
              ++  ++G +Y     +  ++ Y+ R LA+
Sbjct: 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 12/110 (10%)

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKL------KPQDYSLWNKLGATQANSVQSADA 193
              +  LG  +    Q++ A E ++  L L      +  +      LG T     +   A
Sbjct: 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322

Query: 194 ILAYQRALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAM 237
           I  + R L +      +    RA  ++G +++  G +E +++Y  + L +
Sbjct: 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 12/140 (8%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY------SLWNKLGATQANSVQS 190
              + ++  LG  Y     Y+KA++  +  L L                LG T     + 
Sbjct: 83  RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF 142

Query: 191 ADAILAYQRALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244
            +A +  +R L L      + +  RA  N+G  Y  +G +            +      A
Sbjct: 143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202

Query: 245 WQYLRISLRYAGRYPNRGDI 264
            ++ + +L+      +RG  
Sbjct: 203 VEFYQENLKLMRDLGDRGAQ 222

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 30/243 (12%), Positives = 63/243 (25%), Gaps = 56/243 (23%)

Query: 47  LGIAHAENDDDQQAIA------AMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYG 100
             ++                        +   +    L   G    N  +  A + +   
Sbjct: 14  ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFF-- 71

Query: 101 WLRHHPKYGTIAPPELSDSLY-----------YADVARLFVEAARMS------PEDADVH 143
             +   + GT     LS               Y    +       ++        +A   
Sbjct: 72  --QAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129

Query: 144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDY-------------SLWNKLG--------- 181
             LG    +  ++D+A    +  L L  Q               ++++  G         
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189

Query: 182 -ATQANSVQSADAILAYQRALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRA 234
                       A+  YQ  L L      +    RA  N+G +Y   G ++ ++ ++   
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249

Query: 235 LAM 237
           L +
Sbjct: 250 LRI 252

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 10/108 (9%)

Query: 146 LGVLYNLSRQYDKAIESFQTALKLKPQDY----SLWNKLGATQANSVQSADAILAYQRAL 201
            G     S      +  F+ A+++  +D     +++++LG         A A+  +   L
Sbjct: 11  EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70

Query: 202 DL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243
            L      +    +A  N+G +    G ++E++    R L ++ + ++
Sbjct: 71  TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 118

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 60.3 bits (147), Expect = 7e-11
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 12/113 (10%)

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY------SLWNKLGATQANSVQSADA 193
              +  LG  Y    +++ A E ++  L L  Q             LG T         A
Sbjct: 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282

Query: 194 ILAYQRALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           I  + + L +      +    RA  ++G +Y   G +++++ +  + L ++ +
Sbjct: 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 18/110 (16%), Positives = 45/110 (40%), Gaps = 12/110 (10%)

Query: 146 LGVLYNLSRQYDKAIESFQTALKLKPQDY------SLWNKLGATQANSVQSADAILAYQR 199
           LG  + L   +  A+ + +  L +  +          ++ LG       +   A   Y++
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

Query: 200 ALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243
            L L      +    ++  ++G +Y     YE+++ Y+++ LA+  +  +
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 32/139 (23%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY-------------SLWNKLG-- 181
             +A     LG    +   +D+AI   Q  L +  +               ++++  G  
Sbjct: 80  LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 139

Query: 182 -----------ATQANSVQSADAILAYQRALDL------KPNYVRAWANMGISYANQGMY 224
                        +        A+  Y+  L L      +    RA+ N+G ++   G +
Sbjct: 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 199

Query: 225 EESVRYYVRALAMNPKADN 243
            ++V  + + L +  +  +
Sbjct: 200 RDAVIAHEQRLLIAKEFGD 218

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 8/70 (11%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 178 NKLGATQANSVQSADAILAYQRALDL----KPNYVRAWANMGISYANQGMYEESVRYYVR 233
              G     S      +  ++ A+ +           ++ +G +Y     Y +++ Y+  
Sbjct: 9   ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68

Query: 234 ALAMNPKADN 243
            L +     +
Sbjct: 69  DLTLARTIGD 78

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 18/117 (15%), Positives = 45/117 (38%), Gaps = 10/117 (8%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY----SLWNKLGATQANSVQSAD 192
                   + G     S      +  F+ A+++  +D     +++++LG         A 
Sbjct: 6   EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65

Query: 193 AILAYQRALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243
           A+  +   L L      +    +A  N+G +    G ++E++    R L ++ + ++
Sbjct: 66  ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 122

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY------SLWNKLGATQANSVQSADA 193
              +  LG  Y    +++ A E ++  L L  Q             LG T         A
Sbjct: 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286

Query: 194 ILAYQRALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAM 237
           I  + + L +      +    RA  ++G +Y   G +++++ +  + L +
Sbjct: 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 18/110 (16%), Positives = 46/110 (41%), Gaps = 12/110 (10%)

Query: 146 LGVLYNLSRQYDKAIESFQTALKLKPQDY------SLWNKLGATQANSVQSADAILAYQR 199
           LG  + L   +  A+ + +  L +  +          ++ LG       +   A   Y++
Sbjct: 193 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252

Query: 200 ALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243
            L L      +    ++  ++G +Y     YE+++ Y+++ LA+  + ++
Sbjct: 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND 302

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 12/119 (10%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY------SLWNKLGATQANSVQS 190
                   V      +      A++ ++  L L             +  LG T       
Sbjct: 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 203

Query: 191 ADAILAYQRALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243
            DA++A+++ L +      K    RA++N+G +Y   G +E +  YY + L +  +  +
Sbjct: 204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 262

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 32/136 (23%)

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY-------------SLWNKLG----- 181
           A     LG    +   +D+AI   Q  L +  +               ++++  G     
Sbjct: 87  AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 146

Query: 182 --------ATQANSVQSADAILAYQRALDL------KPNYVRAWANMGISYANQGMYEES 227
                     +        A+  Y+  L L      +    RA+ N+G ++   G + ++
Sbjct: 147 PGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206

Query: 228 VRYYVRALAMNPKADN 243
           V  + + L +  +  +
Sbjct: 207 VIAHEQRLLIAKEFGD 222

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 13/112 (11%)

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKL------KPQDYSLWNKLGATQANSVQSADA 193
           A     LG  Y L + Y+KAI+     L +      +  +      LG           A
Sbjct: 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326

Query: 194 ILAYQRALDL------KPNYVRAWANMGISYANQGM-YEESVRYYVRALAMN 238
           +   ++ L++      K   + A  N+       G+ Y  +         ++
Sbjct: 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEID 378

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 20/97 (20%), Positives = 40/97 (41%)

Query: 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212
               D A++ +  A+KL P ++ L++   A  A       A     + +DLKP++ + ++
Sbjct: 17  VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS 76

Query: 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249
               +      +EE+ R Y   L          + L+
Sbjct: 77  RKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 24/123 (19%), Positives = 49/123 (39%)

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS 190
             A ++PE A      G  Y     Y  A+  +  A+K  P++  L++   A     ++ 
Sbjct: 4   RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63

Query: 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250
             A+      + L   +++ +            + ++ R Y  AL ++P  + A + +R 
Sbjct: 64  QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123

Query: 251 SLR 253
            LR
Sbjct: 124 CLR 126

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 58.4 bits (142), Expect = 4e-11
 Identities = 17/92 (18%), Positives = 39/92 (42%)

Query: 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212
              +  A++++   +K  P+D   ++   A  A  +   +AI    +A++  PN+VRA+ 
Sbjct: 17  KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI 76

Query: 213 NMGISYANQGMYEESVRYYVRALAMNPKADNA 244
               +      Y  ++     A   + + +N 
Sbjct: 77  RKATAQIAVKEYASALETLDAARTKDAEVNNG 108

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 17/97 (17%), Positives = 40/97 (41%)

Query: 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212
           ++ Y+ AI+ +  A++L P +   +         +     A+    RA++L   Y++ + 
Sbjct: 26  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85

Query: 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249
               S    G +  ++R Y   + + P   +A    +
Sbjct: 86  RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 61.0 bits (148), Expect = 5e-11
 Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL------KPQDY 174
           Y      ++ E    +      H +    +   +QY+ AI  FQ A  +           
Sbjct: 165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224

Query: 175 SLWNKLGATQANSVQSADAILAYQRALDL------KPNYVRAWANMGISYANQGMYEESV 228
                +G  + +  Q  DAI  ++RA+ +       P+  +A+  +   +   G  +++ 
Sbjct: 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAH 284

Query: 229 RYYVRALAMNPKADN 243
            Y+ + +A + KA +
Sbjct: 285 EYHSKGMAYSQKAGD 299

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 24/174 (13%), Positives = 60/174 (34%), Gaps = 18/174 (10%)

Query: 88  ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADV----- 142
           E +Q   L Y     RH+     + P E         ++ L +E  +       +     
Sbjct: 46  EEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYF 105

Query: 143 HIVLGVLYNLSRQYDKAIESFQTALKL------KPQDYSLWNKLGATQANSVQSADAILA 196
           +   G+     R+Y  AI+ F+ A         + +    + K+  +     Q+  ++  
Sbjct: 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDY 165

Query: 197 YQRAL-------DLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243
            ++A              ++  +    ++ +   YE+++ ++ +A +M      
Sbjct: 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 13/120 (10%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKL-------KPQDYSLWNKLGATQANSVQ 189
            E A+    +   Y   +Q   +++  + A ++         +     +       +  Q
Sbjct: 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ 199

Query: 190 SADAILAYQRALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243
             DAI  +Q+A  +           R   N+G+   +Q  YE+++ Y+ RA+A+  +++ 
Sbjct: 200 YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTAL----KLKPQDYSLWNKLGATQANSVQSAD 192
           P     + ++  ++    + DKA E     +    K     Y    +   +   S    +
Sbjct: 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320

Query: 193 AILAYQRALDLKPNYV---RAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           AI  +   L+ K  Y        ++   Y  +  ++++  Y+++   +   
Sbjct: 321 AIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 16/134 (11%), Positives = 40/134 (29%), Gaps = 11/134 (8%)

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY------ 174
           +      ++      S        V+   Y+  + YDKA+   + AL+L           
Sbjct: 163 HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222

Query: 175 SLWNKLGATQANSVQSADAILAYQRALDLK-----PNYVRAWANMGISYANQGMYEESVR 229
                +  +   S     A+  +Q+A  +          +    +  +    G  +++ +
Sbjct: 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ 282

Query: 230 YYVRALAMNPKADN 243
           +    L       +
Sbjct: 283 FIEEGLDHITARSH 296

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 55.2 bits (133), Expect = 5e-09
 Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 13/120 (10%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSL-------WNKLGATQANSVQ 189
            E A+ H  +   Y   +Q   ++     AL +                 +     +   
Sbjct: 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH 197

Query: 190 SADAILAYQRALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243
              A+   + AL+L            +  N+  SY   G  + +V ++ +A  ++ +   
Sbjct: 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 45.2 bits (107), Expect = 9e-06
 Identities = 27/244 (11%), Positives = 67/244 (27%), Gaps = 34/244 (13%)

Query: 28  LALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIA------AMMRAHEAEPTNL-EVLLS 80
                 V  + E +E    +  A+        ++        + + H        + L  
Sbjct: 128 EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187

Query: 81  LGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY-----------YADVARLF 129
           +  ++ +      AL +L   L             ++ SL                   F
Sbjct: 188 IAGNYDDFKHYDKALPHLEAALELAMDIQN--DRFIAISLLNIANSYDRSGDDQMAVEHF 245

Query: 130 VEAARMSPEDADVHIV-----LGVLYNLSRQYDKAIESFQTALKLKPQD--------YSL 176
            +AA++S E     +      L      + Q  KA +  +  L              +  
Sbjct: 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF 305

Query: 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236
              +     +  +  D +  +++  +L         +    + +   +E++  +Y + L 
Sbjct: 306 LQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364

Query: 237 MNPK 240
               
Sbjct: 365 AQED 368

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY------SLWNKLGATQANSVQSADA 193
                 LG  + L   +  A+ + +  L +  +          ++ LG       +   A
Sbjct: 9   GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68

Query: 194 ILAYQRALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243
              Y++ L L      +    ++  ++G +Y     YE+++ Y+++ LA+  +  +
Sbjct: 69  SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 56.4 bits (137), Expect = 4e-10
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 12/104 (11%)

Query: 146 LGVLYNLSRQYDKAIESFQTALKLKPQDY------SLWNKLGATQANSVQSADAILAYQR 199
           LG  Y    +++ A E ++  L L  Q             LG T         AI  + +
Sbjct: 55  LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114

Query: 200 ALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAM 237
            L +      +    RA  ++G +Y   G +++++ +  + L +
Sbjct: 115 HLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 55.4 bits (134), Expect = 5e-10
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212
            R+Y +A   +  A+   P     +           Q   A+   +RAL+L    V+A  
Sbjct: 22  GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81

Query: 213 NMGISYANQGMYEESVRYYVRALAMNPK-----ADNAWQYLRIS 251
            +G        Y+E++    RA ++  +      D+    LRI+
Sbjct: 82  FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 57.0 bits (137), Expect = 1e-09
 Identities = 17/123 (13%), Positives = 41/123 (33%), Gaps = 11/123 (8%)

Query: 127 RLFVEAARMSPEDADVHIVLGVLYNLSRQY--------DKAIESFQTALKLKPQDYS--L 176
            L  E  + SPE         ++  +                      + L   +    +
Sbjct: 220 ELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSII 279

Query: 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236
           +     +     ++ ++  A    +DL+ +++  +  +G  Y  +GM  E+   Y+ A  
Sbjct: 280 YQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFN 338

Query: 237 MNP 239
           + P
Sbjct: 339 LRP 341

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 55.9 bits (134), Expect = 3e-09
 Identities = 18/159 (11%), Positives = 44/159 (27%), Gaps = 16/159 (10%)

Query: 115 ELSDSLYYADVARLFVEAARMSPEDADV--HIVLGVLYNLS---RQYDKAIESFQTALKL 169
            LS +L      R+     ++ P    +  +      Y L    +  ++A E     ++ 
Sbjct: 169 SLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS 228

Query: 170 KPQD----------YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA 219
            P+             + +         + + +  +     L    N    +    +S  
Sbjct: 229 SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSAL 288

Query: 220 NQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
            +G  +ES +     + +       +  L       G  
Sbjct: 289 VKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMN 326

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 45.9 bits (108), Expect = 5e-06
 Identities = 24/183 (13%), Positives = 48/183 (26%), Gaps = 19/183 (10%)

Query: 36  KNPENSEGWRLLGIAHA-----ENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE 90
             P           AH      ++    +A   +    ++ P          +       
Sbjct: 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHS 248

Query: 91  QAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVE-------------AARMSP 137
           Q    +     L          P   + S+ Y   A   +                 +  
Sbjct: 249 QHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308

Query: 138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAY 197
                +++LG +Y +     +A +++ TA  L+P   +L+         SV      L  
Sbjct: 309 -SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDK 367

Query: 198 QRA 200
             A
Sbjct: 368 FLA 370

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 14/111 (12%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 146 LGVLYNLSRQYDKAIESFQTALKL-------KPQDYSLWNKLGATQANSVQSADAILAYQ 198
           +G++  ++  +D A   F    +L            +   ++     +    A A   Y+
Sbjct: 72  VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYE 131

Query: 199 RALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243
           ++L        +     A+  +G     +    E+ ++++RA  +  + ++
Sbjct: 132 KSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED 182

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 13/139 (9%)

Query: 118 DSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL------KP 171
           ++  YA   R            +    +LG +Y    ++D+A  SFQ   +         
Sbjct: 4   EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63

Query: 172 QDYSLWNKLGATQANSVQSADAILAYQRALDL-------KPNYVRAWANMGISYANQGMY 224
            ++   +++G  +  +     A   +    +L                 +     + G  
Sbjct: 64  AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123

Query: 225 EESVRYYVRALAMNPKADN 243
             + + Y ++L    +AD+
Sbjct: 124 AGARQEYEKSLVYAQQADD 142

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 9/117 (7%), Positives = 25/117 (21%), Gaps = 14/117 (11%)

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL-------KPQD 173
            + +   L           +     +  +         A + ++ +L             
Sbjct: 88  CFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147

Query: 174 YSLWNKLGATQANSVQSADAILAYQRALDL------KPNYVRAWANMGISYANQGMY 224
            +    LG          +A   + RA D+                +     +   +
Sbjct: 148 CAFRG-LGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 55.3 bits (133), Expect = 3e-09
 Identities = 18/92 (19%), Positives = 34/92 (36%)

Query: 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212
            R+Y +A   +  A+   P     +           Q   A+   +RAL+L    V+A  
Sbjct: 17  GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76

Query: 213 NMGISYANQGMYEESVRYYVRALAMNPKADNA 244
            +G        Y+E++    RA ++  +    
Sbjct: 77  FLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 149 LYNLSRQYDKAIESFQTALKLKPQDYS-LWNKLGATQANSVQSADAILAYQRALDLKPNY 207
           L N     + A+++ +  L+ +P      +  +G           A+  YQ A++L P+ 
Sbjct: 10  LINQGD-IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

Query: 208 VRAWANMG----ISYANQGMY 224
               A       +++ N+ MY
Sbjct: 69  PALQARKMVMDILNFYNKDMY 89

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 192 DAILAYQRALDLKP-NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY 247
           +A+ A +  L  +P     A+  MG +Y   G +++++  Y  A+ +NP +      
Sbjct: 18  NALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR 74

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 52.5 bits (125), Expect = 1e-08
 Identities = 16/117 (13%), Positives = 41/117 (35%), Gaps = 21/117 (17%)

Query: 156 YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS----------ADAILAYQRALDLKP 205
           +++  +  +   K  P D     + G       Q            +AI  ++ AL + P
Sbjct: 18  FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77

Query: 206 NYVRAWANMGISYANQG-----------MYEESVRYYVRALAMNPKADNAWQYLRIS 251
               A   +G +Y +              ++ + +++ +A+   P   +  + L ++
Sbjct: 78  KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 10/94 (10%), Positives = 27/94 (28%), Gaps = 1/94 (1%)

Query: 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212
              Y +A+  +   +  +PQ+   ++          +   AI   Q+ L           
Sbjct: 17  QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76

Query: 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246
              + Y    + + +V      +    +    + 
Sbjct: 77  RSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYD 109

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS 251
           +A+  Y + +  +P     ++N  ++    G Y ++++   + L     A++     ++ 
Sbjct: 22  EAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81

Query: 252 LR 253
            R
Sbjct: 82  YR 83

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 51.8 bits (125), Expect = 5e-08
 Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 15/107 (14%)

Query: 146 LGVLYNLSRQYDKAIESFQTALKLKPQDY---------SLWNKLGATQANSVQSADAILA 196
           L   Y    +Y  A   ++  L    +            +W      + +  +  D+   
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234

Query: 197 YQRALDLK------PNYVRAWANMGISYANQGMYEESVRYYVRALAM 237
            +     K      P       ++G  Y  QG  E +      A   
Sbjct: 235 GEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 30/115 (26%)

Query: 146 LGVLYNLSRQYDKAIESFQTALKLKPQDY---------------SLWNKLGATQANSVQS 190
           L ++Y    +Y +A      AL ++ +                  L+ K G       + 
Sbjct: 49  LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG-------KY 101

Query: 191 ADAILAYQRALDLK--------PNYVRAWANMGISYANQGMYEESVRYYVRALAM 237
            +A    +RAL+++        P+  +   N+ +   NQG  EE   YY RAL +
Sbjct: 102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 18/109 (16%)

Query: 146 LGVLYNLSRQYDKAIESFQTALKLKPQDY---------SLWNKLGATQANSVQSADAILA 196
           L VLY    +Y +A    + AL+++ +            L N L     N  ++ +    
Sbjct: 91  LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNN-LALLCQNQGKAEEVEYY 149

Query: 197 YQRALDLK--------PNYVRAWANMGISYANQGMYEESVRYYVRALAM 237
           Y+RAL++         PN  +   N+   Y  QG Y+++   Y   L  
Sbjct: 150 YRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 45.2 bits (108), Expect = 7e-06
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 22/114 (19%)

Query: 146 LGVLYNLSR------QYDKAIESFQTALKLKPQDY--------SLWNKLGATQANSVQSA 191
           +G  ++             A+   + AL+   +          ++ N L     +  +  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 60

Query: 192 DAILAYQRALDLK--------PNYVRAWANMGISYANQGMYEESVRYYVRALAM 237
           +A      AL ++        P       N+ + Y  +G Y+E+     RAL +
Sbjct: 61  EAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 15/111 (13%), Positives = 30/111 (27%), Gaps = 15/111 (13%)

Query: 146 LGVLYNLSRQYDKAIESFQTALKLKPQDY---------SLWNKLGATQANSVQSADAILA 196
           L   Y    ++ +A   ++  L    +            +W      +    +  D    
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260

Query: 197 YQRALDLK------PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA 241
            +     K      P       N+G  Y  QG +E +      A+    + 
Sbjct: 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQG 311

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 18/109 (16%)

Query: 146 LGVLYNLSRQYDKAIESFQTALKLKPQDY---------SLWNKLGATQANSVQSADAILA 196
           L VLY    +Y +A    + AL+++ +            L N L     N  +  +    
Sbjct: 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN-LALLCQNQGKYEEVEYY 175

Query: 197 YQRALDLK--------PNYVRAWANMGISYANQGMYEESVRYYVRALAM 237
           YQRAL++         PN  +   N+   Y  QG ++++   Y   L  
Sbjct: 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 16/108 (14%)

Query: 146 LGVLYNLSRQYDKAIESFQTALKLKPQDY--------SLWNKLGATQANSVQSADAILAY 197
           L + Y    +Y+ A+   + AL+   +          ++ N L     +  +  DA    
Sbjct: 33  LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92

Query: 198 QRALDLK--------PNYVRAWANMGISYANQGMYEESVRYYVRALAM 237
             AL ++        P       N+ + Y  +G Y+E+     RAL +
Sbjct: 93  NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 47.9 bits (115), Expect = 9e-07
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 18/109 (16%)

Query: 146 LGVLYNLSRQYDKAIESFQTALKLKPQDY---------SLWNKLGATQANSVQSADAILA 196
           L ++Y    +Y  A      AL ++ +           +L N L        +  +A   
Sbjct: 75  LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL-NNLAVLYGKRGKYKEAEPL 133

Query: 197 YQRALDLK--------PNYVRAWANMGISYANQGMYEESVRYYVRALAM 237
            +RAL+++        P+  +   N+ +   NQG YEE   YY RAL +
Sbjct: 134 CKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 178 NKLGATQANSVQSADAILAYQRALDLK--------PNYVRAWANMGISYANQGMYEESVR 229
           + L    A+  +   A+   ++AL+          P+       + + Y +Q  Y+++  
Sbjct: 31  HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAN 90

Query: 230 YYVRALAM 237
               ALA+
Sbjct: 91  LLNDALAI 98

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 3/100 (3%)

Query: 153 SRQYDKAIESFQTALKLKPQDYS---LWNKLGATQANSVQSADAILAYQRALDLKPNYVR 209
              Y  A+ ++  AL L         L     A          A     +A++     V+
Sbjct: 41  CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100

Query: 210 AWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249
           A      +    G  +++V    R +++ PK     + LR
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 6e-07
 Identities = 30/205 (14%), Positives = 62/205 (30%), Gaps = 44/205 (21%)

Query: 15  QELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN 74
           ++ F      + V  +   +L   E      ++       D                   
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEIDH---IIM----SKDAVSGT-------------- 64

Query: 75  LEVLLSLGVSHTNELEQA--AALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEA 132
           L +  +L       +++     L+  Y +L    K      P +   +Y     RL+ + 
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDN 123

Query: 133 ARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL-KLKPQDY-SLWNKLGATQANSVQS 190
              +             YN+SR   +     + AL +L+P     +   LG+    +  +
Sbjct: 124 QVFAK------------YNVSRL--QPYLKLRQALLELRPAKNVLIDGVLGS--GKTWVA 167

Query: 191 ADAILAYQRALDLKPNYVRAWANMG 215
            D  L+Y +        +  W N+ 
Sbjct: 168 LDVCLSY-KVQCKMDFKI-FWLNLK 190

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 2/142 (1%)

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
           +Y  + +       +          LG++ N        ++   ++             L
Sbjct: 101 FYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHL 158

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           G       Q++ A   Y+ A  L P+  + +  + I  +++G +  ++ YY R++A+   
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

Query: 241 ADNAWQYLRISLRYAGRYPNRG 262
              A   L+ +L  A    +  
Sbjct: 219 FPAASTNLQKALSKALESRDEV 240

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 15/135 (11%), Positives = 46/135 (34%), Gaps = 11/135 (8%)

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLW------NKLGATQANSVQSADA 193
           A  +    V +  ++Q ++A +++    +    + SL+       + G    +  +  +A
Sbjct: 36  ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95

Query: 194 ILAYQRALDL-----KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL 248
           +   ++A  +      P+      +            ++V  Y +A A+    +   Q  
Sbjct: 96  VQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAA 155

Query: 249 RISLRYAGRYPNRGD 263
            +  + +     +  
Sbjct: 156 ELIGKASRLLVRQQK 170

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 15/139 (10%), Positives = 40/139 (28%), Gaps = 15/139 (10%)

Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL-----KPQDYSLWNKLGATQA 185
              R     A      G++    ++  +A++  + A  +      P   ++         
Sbjct: 67  ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126

Query: 186 NSVQSADAILAYQRALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
             +  + A+  YQ+A  +                       Q  ++E+     +  +M  
Sbjct: 127 EPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186

Query: 240 KADN----AWQYLRISLRY 254
           + +N      + +   L  
Sbjct: 187 EMENYPTCYKKCIAQVLVQ 205

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 14/135 (10%)

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------Y 174
           Y    + ++VE        A      G L        KA+  +Q A  +   +       
Sbjct: 98  YIEKASVMYVENGTPDTA-AMALDRAGKLME-PLDLSKAVHLYQQAAAVFENEERLRQAA 155

Query: 175 SLWNKLGATQANSVQSADAILAYQRALDL------KPNYVRAWANMGISYANQGMYEESV 228
            L  K         +  +A  + Q+   +       P   +      +   ++  Y  + 
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215

Query: 229 RYYVRALAMNPKADN 243
           +    + ++   + +
Sbjct: 216 KCVRESYSIPGFSGS 230

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 16/112 (14%)

Query: 155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSA----------------DAILAYQ 198
           + ++AI  ++ AL          +++   +  +++ +                 AI    
Sbjct: 53  EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112

Query: 199 RALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250
           + L +  N V+A   +G++    G  EE+     +A ++NP   +      +
Sbjct: 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 164

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 45.3 bits (107), Expect = 8e-06
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 17/112 (15%)

Query: 155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSA----------------DAILAYQ 198
           +Y +A+  ++  +     + S  N+  A +A +++ A                 AI +  
Sbjct: 162 KYKQALLQYKKIVSWLEYESSFSNEE-AQKAQALRLASHLNLAMCHLKLQAFSAAIESCN 220

Query: 199 RALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250
           +AL+L  N  +  +  G ++     +E +   + + L + P    A   L +
Sbjct: 221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 272

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 154 RQYDKAIESFQTALKLKPQDY--------SLWNKLGATQANSVQSADAILAYQRALDLKP 205
            QY K +   +    L  ++         + +  L        +   A+    +AL L  
Sbjct: 289 IQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348

Query: 206 NYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
              +     G +      +E +   + + L +NP+
Sbjct: 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 26/225 (11%), Positives = 62/225 (27%), Gaps = 10/225 (4%)

Query: 39  ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYL 98
           +         ++      + +++         + +  +  +        +        Y 
Sbjct: 5   DRLASLFESAVS-MLPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYS 63

Query: 99  YGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDK 158
                       I+   L+  +    +  L+ +          + +           Y  
Sbjct: 64  RRNFGQLSGSVQISMSTLNARI---AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYAD 120

Query: 159 AIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWAN--MGI 216
           A+E+ + A     +    W K       + +  D I   + A      ++   A    G+
Sbjct: 121 AMEALEAAPVAGSEHLVAWMK-AVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGV 179

Query: 217 SYANQGMYEESVRYYVRAL---AMNPKADNAWQYLRISLRYAGRY 258
           + AN  ++ E+ R    A    A    A     YL ++ R  G  
Sbjct: 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE 224

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 17/92 (18%), Positives = 39/92 (42%)

Query: 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212
           ++ Y+ AI+ +  A++L P +   +         +     A+    RA++L   Y++ + 
Sbjct: 19  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78

Query: 213 NMGISYANQGMYEESVRYYVRALAMNPKADNA 244
               S    G +  ++R Y   + + P   +A
Sbjct: 79  RRAASNMALGKFRAALRDYETVVKVKPHDKDA 110

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 23/115 (20%)

Query: 155 QYDKAIESFQTALKLKPQ------------DYSLWNKLGATQANSVQSADAILAYQRAL- 201
           +YD+A  + + A+++               D      L    A      +A+ +  +AL 
Sbjct: 26  EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85

Query: 202 ------DLKPNYVRAWA----NMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246
                 +L  +  + W     +  ++    G   E++  + + + M  +      
Sbjct: 86  YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 18/137 (13%), Positives = 48/137 (35%), Gaps = 13/137 (9%)

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKL------KPQDYSLWNKLGATQANSVQSADA 193
           AD+ +    +Y L ++ + A +SF  A         + +  + + +      +   S +A
Sbjct: 37  ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96

Query: 194 ILAYQRALDLKPNYVR------AWANMGISYANQ-GMYEESVRYYVRALAMNPKADNAWQ 246
           + + + A+ +  +  +          +G    N    Y +++  Y  A     +  +   
Sbjct: 97  VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156

Query: 247 YLRISLRYAGRYPNRGD 263
             +  ++ A      G 
Sbjct: 157 SNKCFIKCADLKALDGQ 173

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 3/138 (2%)

Query: 37  NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH--TNELEQA-A 93
           N    E          +  +  QA+  +    +   +  +V L+       T + E A  
Sbjct: 2   NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61

Query: 94  ALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS 153
            L  +    + +     IA  EL      +   +   +    +P++ ++   L V YN  
Sbjct: 62  LLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQV 121

Query: 154 RQYDKAIESFQTALKLKP 171
            + ++A+E     LK+  
Sbjct: 122 GRDEEALELLWNILKVNL 139

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 24/178 (13%), Positives = 53/178 (29%), Gaps = 23/178 (12%)

Query: 96  KYLYGWLRHHPKYGT--IAPPELSDSLYYADVARLFVEAARMSPED----ADVHIVLGVL 149
           +  YG   +        +A       +   D  +     + M+ E+    AD   + G  
Sbjct: 129 ELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNS 188

Query: 150 YNLSRQYDKAIESFQTALKLKPQDY-----------------SLWNKLGATQANSVQSAD 192
                + ++A++ ++ A+     D+                      + A      +  +
Sbjct: 189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDE 248

Query: 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250
           AI      L  +    +A    G + A  G  + +   + +A    P      + LR 
Sbjct: 249 AIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 1/103 (0%)

Query: 163 FQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG 222
            +  L+  P D   W+ L   +A +     A   Y+R +   P+  R W     +     
Sbjct: 2   AEKKLEENPYDLDAWSIL-IREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAK 60

Query: 223 MYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265
            Y++  + + R L      D    YL       G+ P+  +  
Sbjct: 61  NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKM 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	100.0
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
3u4t_A	272	TPR repeat-containing protein; structural genomics	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	100.0
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	100.0
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	100.0
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	100.0
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.98
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.98
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.98
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.98
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.97
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.97
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.97
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.97
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.97
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.97
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.97
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.97
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.97
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.97
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.96
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.96
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.96
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.96
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.96
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.96
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.96
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.96
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.96
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.96
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.96
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.96
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.95
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.95
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.95
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.95
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.94
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.94
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.94
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.94
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.94
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.94
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.93
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.93
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.93
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.93
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.93
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.93
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.93
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.93
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.93
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.93
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.92
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.92
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.92
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.92
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.92
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.92
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.92
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.92
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.92
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.91
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.91
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.91
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.91
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.9
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.9
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.9
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.89
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.89
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.89
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.89
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.88
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.88
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.88
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.88
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.88
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.87
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.87
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.87
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.87
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.87
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.86
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.86
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.86
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.86
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.85
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.85
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.84
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.84
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.84
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.84
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.84
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.83
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.83
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.82
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.82
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.82
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.82
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.82
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.82
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.82
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.82
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.81
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.81
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.81
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.81
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.8
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.8
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.8
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.8
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.79
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.79
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.79
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.79
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.79
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.78
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.78
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.78
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.78
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.78
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.78
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.77
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.77
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.77
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.77
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.76
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.75
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.75
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.75
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.74
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.74
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.74
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.74
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.74
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.73
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.73
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.73
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.73
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.73
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.72
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.72
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.72
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.71
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.71
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.71
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.7
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.7
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.7
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.7
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.69
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.68
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.68
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.68
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.67
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.67
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.66
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.66
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.65
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.62
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.62
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.62
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.61
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.58
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.56
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.56
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.55
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.55
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.53
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.51
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.51
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.47
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.47
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.44
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.44
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.42
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.35
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.34
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.32
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.3
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.3
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.3
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.25
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.24
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.2
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.19
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.11
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.07
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.05
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.01
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.98
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.89
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.87
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.84
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.84
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.77
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.72
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.62
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.59
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.37
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.37
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.2
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.14
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.14
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.05
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.68
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.68
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.63
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	97.56
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.52
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.45
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.32
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.29
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.25
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.12
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.02
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	97.01
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.99
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.99
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.86
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.83
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.82
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.79
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.76
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.75
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	96.47
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	96.36
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.19
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	96.15
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	96.08
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.07
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.99
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.77
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.78
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.62
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.37
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	92.79
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.06
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	91.97
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	90.99
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	90.42
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	87.66
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	86.83
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.64
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	85.54
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	85.08
2cwy_A	94	Hypothetical protein TTHA0068; structural genomics	82.79
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	82.56
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	81.77
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	80.14

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=100.00  E-value=1e-39  Score=254.11  Aligned_cols=262  Identities=39%  Similarity=0.698  Sum_probs=244.5

Q ss_pred             CCCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhh
Q 024618            2 NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSL   81 (265)
Q Consensus         2 np~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   81 (265)
                      ||......++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus        60 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  139 (365)
T 4eqf_A           60 NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL  139 (365)
T ss_dssp             CTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            56667777999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc-------------hhhhhhhhchHHHHHHHHHHHhcCCC--CHHHHHHH
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIA-------------PPELSDSLYYADVARLFVEAARMSPE--DADVHIVL  146 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l  146 (265)
                      |.++...|++++|+..++++++..|+....+             +.++...|++++|+..++++++.+|.  ++.++..+
T Consensus       140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  219 (365)
T 4eqf_A          140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL  219 (365)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence            9999999999999999999999988765543             67899999999999999999999999  89999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHH
Q 024618          147 GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE  226 (265)
Q Consensus       147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  226 (265)
                      |.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCC------------CchhHHHHHHHHHHhCCcccccc
Q 024618          227 SVRYYVRALAMNPK------------ADNAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       227 A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      |+.+|++++++.|+            +..+|..++.++..+|+.+.+..
T Consensus       300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  348 (365)
T 4eqf_A          300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA  348 (365)
T ss_dssp             HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence            99999999999887            36789999999999999887654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=6.5e-39  Score=249.58  Aligned_cols=263  Identities=43%  Similarity=0.721  Sum_probs=248.6

Q ss_pred             CCCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhh
Q 024618            2 NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSL   81 (265)
Q Consensus         2 np~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   81 (265)
                      ||......++.+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+
T Consensus        59 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  138 (368)
T 1fch_A           59 NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL  138 (368)
T ss_dssp             CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            45556677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc------------------hhhhhhhhchHHHHHHHHHHHhcCCC--CHH
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIA------------------PPELSDSLYYADVARLFVEAARMSPE--DAD  141 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~  141 (265)
                      |.++...|++++|+..+++++...|+....+                  ...+...|++++|+..++++++.+|.  ++.
T Consensus       139 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  218 (368)
T 1fch_A          139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD  218 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence            9999999999999999999999999876443                  22334899999999999999999999  899


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ  221 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  221 (265)
                      ++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...
T Consensus       219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL  298 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHHhCCccccccc
Q 024618          222 GMYEESVRYYVRALAMNPKA-----------DNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       222 g~~~~A~~~~~~a~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      |++++|+..|++++++.|++           ..+|..++.++..+|++++|..+
T Consensus       299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  352 (368)
T 1fch_A          299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  352 (368)
T ss_dssp             TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence            99999999999999999887           78999999999999999998754

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=100.00  E-value=1.6e-38  Score=243.43  Aligned_cols=264  Identities=40%  Similarity=0.653  Sum_probs=251.2

Q ss_pred             CCCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhh
Q 024618            2 NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSL   81 (265)
Q Consensus         2 np~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   81 (265)
                      ||......++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+
T Consensus        16 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   95 (327)
T 3cv0_A           16 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL   95 (327)
T ss_dssp             CGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHH
Confidence            56666777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchh------------------hhhhhhchHHHHHHHHHHHhcCCCCHHHH
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIAPP------------------ELSDSLYYADVARLFVEAARMSPEDADVH  143 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  143 (265)
                      |.++...|++++|+..++++++..|.....+..                  ++...|++++|+..++++++..|.++.++
T Consensus        96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  175 (327)
T 3cv0_A           96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH  175 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Confidence            999999999999999999999999998777622                  48899999999999999999999999999


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCC
Q 024618          144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM  223 (265)
Q Consensus       144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  223 (265)
                      ..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+
T Consensus       176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~  255 (327)
T 3cv0_A          176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ  255 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHHhCCcccccccC
Q 024618          224 YEESVRYYVRALAMNPK------------ADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       224 ~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      +++|+..++++++..|+            ++.++..++.++..+|++++|..+|
T Consensus       256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  309 (327)
T 3cv0_A          256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY  309 (327)
T ss_dssp             HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            99999999999999999            7899999999999999999987654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=8.8e-39  Score=250.74  Aligned_cols=253  Identities=23%  Similarity=0.226  Sum_probs=143.9

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ   91 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   91 (265)
                      .+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++
T Consensus       106 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  185 (388)
T 1w3b_A          106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI  185 (388)
T ss_dssp             HHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            33444444444444444444444444444444444444444445555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618           92 AAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK  168 (265)
Q Consensus        92 ~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  168 (265)
                      ++|+..|+++++.+|++...+   +.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++
T Consensus       186 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  265 (388)
T 1w3b_A          186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE  265 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            555555555555555544333   55555555555555555555555666666666666666666666666666666666


Q ss_pred             hCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHH
Q 024618          169 LKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL  248 (265)
Q Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l  248 (265)
                      .+|+++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..++++++..|++..++..+
T Consensus       266 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  345 (388)
T 1w3b_A          266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL  345 (388)
T ss_dssp             TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHhCCccccccc
Q 024618          249 RISLRYAGRYPNRGDI  264 (265)
Q Consensus       249 ~~~~~~~~~~~~A~~~  264 (265)
                      |.++...|++++|+..
T Consensus       346 ~~~~~~~g~~~~A~~~  361 (388)
T 1w3b_A          346 ASVLQQQGKLQEALMH  361 (388)
T ss_dssp             HHHHHTTTCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            6666666666666543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=6.5e-39  Score=251.49  Aligned_cols=253  Identities=21%  Similarity=0.232  Sum_probs=130.9

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE   90 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   90 (265)
                      +.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|+
T Consensus        71 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  150 (388)
T 1w3b_A           71 SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR  150 (388)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618           91 QAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL  167 (265)
Q Consensus        91 ~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  167 (265)
                      +++|+..|+++++..|++...+   +.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++
T Consensus       151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  230 (388)
T 1w3b_A          151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL  230 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4444444444444444443333   4444455555555555555555555555555555555555555555555555555


Q ss_pred             hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618          168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY  247 (265)
Q Consensus       168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  247 (265)
                      ..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|+++.++..
T Consensus       231 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  310 (388)
T 1w3b_A          231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN  310 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhCCcccccc
Q 024618          248 LRISLRYAGRYPNRGD  263 (265)
Q Consensus       248 l~~~~~~~~~~~~A~~  263 (265)
                      ++.++...|++++|++
T Consensus       311 l~~~~~~~g~~~~A~~  326 (388)
T 1w3b_A          311 LANIKREQGNIEEAVR  326 (388)
T ss_dssp             HHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHH
Confidence            5555555555555543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=239.00  Aligned_cols=257  Identities=14%  Similarity=0.125  Sum_probs=209.1

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN   87 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   87 (265)
                      ...+.+|..++..|++++|+..++++++.+|.++.++..++.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  102 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM  102 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            34567788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hh-hHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618           88 EL-EQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF  163 (265)
Q Consensus        88 ~~-~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  163 (265)
                      .| ++++|+..++++++..|++...+   +.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+
T Consensus       103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  182 (330)
T 3hym_B          103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF  182 (330)
T ss_dssp             SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            88 78888888888888888776665   777888888888888888888888887788888888888888888888888


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC---------CcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618          164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLK---------PNYVRAWANMGISYANQGMYEESVRYYVRA  234 (265)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  234 (265)
                      +++++..|.++.++..+|.++...|++++|+..+++++...         |..+.++..+|.++...|++++|+.+++++
T Consensus       183 ~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  262 (330)
T 3hym_B          183 SQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA  262 (330)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888765         555677888888888888888888888888


Q ss_pred             HhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          235 LAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       235 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      ++.+|+++.++..+|.++...|++++|++.
T Consensus       263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  292 (330)
T 3hym_B          263 LVLIPQNASTYSAIGYIHSLMGNFENAVDY  292 (330)
T ss_dssp             HHHSTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HhhCccchHHHHHHHHHHHHhccHHHHHHH
Confidence            888888888888888888888888877654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.6e-36  Score=229.09  Aligned_cols=252  Identities=20%  Similarity=0.162  Sum_probs=238.9

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEND-DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT   86 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   86 (265)
                      ..+...+.++...|++++|+..++++++.+|.++.++..+|.++...| ++++|+.+++++++.+|.++.++..+|.++.
T Consensus        57 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  136 (330)
T 3hym_B           57 SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA  136 (330)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            345668999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618           87 NELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF  163 (265)
Q Consensus        87 ~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  163 (265)
                      ..|++++|+..++++++..|+....+   +.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+
T Consensus       137 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  216 (330)
T 3hym_B          137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWF  216 (330)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHH
Confidence            99999999999999999999977666   899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhC---------CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618          164 QTALKLK---------PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA  234 (265)
Q Consensus       164 ~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  234 (265)
                      +++++..         |..+.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.+++++
T Consensus       217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (330)
T 3hym_B          217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA  296 (330)
T ss_dssp             HHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            9999986         6678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCchhHHHHHHHH-HHhCCcc
Q 024618          235 LAMNPKADNAWQYLRISL-RYAGRYP  259 (265)
Q Consensus       235 ~~~~~~~~~~~~~l~~~~-~~~~~~~  259 (265)
                      ++++|+++.++..++.++ ...|+.+
T Consensus       297 l~~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          297 LGLRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             TTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HccCCCchHHHHHHHHHHHHHhCchh
Confidence            999999999999999998 4556543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=3.8e-36  Score=232.87  Aligned_cols=255  Identities=16%  Similarity=0.158  Sum_probs=154.3

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      ++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|
T Consensus         6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   85 (359)
T 3ieg_A            6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG   85 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence            45566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hHHHHHHHHHHHHhcCC---CCCCCc---------------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024618           90 EQAAALKYLYGWLRHHP---KYGTIA---------------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYN  151 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~---~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  151 (265)
                      ++++|+..++++++..|   ++...+               +..+...|++++|+..++++++..|.++.++..+|.++.
T Consensus        86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (359)
T 3ieg_A           86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI  165 (359)
T ss_dssp             CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            66666666666666666   333222               244445555555555555555555555555555555555


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh---------------------------------------------
Q 024618          152 LSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN---------------------------------------------  186 (265)
Q Consensus       152 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------------------  186 (265)
                      ..|++++|+..++++++..|.++.++..+|.++..                                             
T Consensus       166 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  245 (359)
T 3ieg_A          166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI  245 (359)
T ss_dssp             HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555554444                                             


Q ss_pred             -hcCcHHHHHHHHHHHhcCCcchh----hHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccc
Q 024618          187 -SVQSADAILAYQRALDLKPNYVR----AWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNR  261 (265)
Q Consensus       187 -~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  261 (265)
                       .|++++|+..+++++...|+++.    ++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|
T Consensus       246 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A  325 (359)
T 3ieg_A          246 RDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEA  325 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHH
Confidence             45555555555555555554432    2445666667777777777777777777776677777777777777777666


Q ss_pred             ccc
Q 024618          262 GDI  264 (265)
Q Consensus       262 ~~~  264 (265)
                      ++.
T Consensus       326 ~~~  328 (359)
T 3ieg_A          326 IQD  328 (359)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=8.8e-36  Score=230.78  Aligned_cols=248  Identities=13%  Similarity=0.112  Sum_probs=170.3

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC---ChHHHHhhh-----
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP---TNLEVLLSL-----   81 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l-----   81 (265)
                      ++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|   +++.++..+     
T Consensus        40 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  119 (359)
T 3ieg_A           40 YYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE  119 (359)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH
Confidence            455566666666666666666666666666666666666666666666666666666666655   444444444     


Q ss_pred             -------hhhhhhhhhHHHHHHHHHHHHhcCC----------------------------------CCCCCc---hhhhh
Q 024618           82 -------GVSHTNELEQAAALKYLYGWLRHHP----------------------------------KYGTIA---PPELS  117 (265)
Q Consensus        82 -------a~~~~~~~~~~~A~~~~~~~~~~~~----------------------------------~~~~~~---~~~~~  117 (265)
                             |.++...|++++|+..++++++..|                                  +++..+   +.++.
T Consensus       120 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  199 (359)
T 3ieg_A          120 MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY  199 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                   3444444555555555555544444                                  444333   45555


Q ss_pred             hhhchHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHHccCHHHHHHHHHHHHhhCCCCHH----HHHHHH
Q 024618          118 DSLYYADVARLFVEAARMSPEDADVHI------------VLGVLYNLSRQYDKAIESFQTALKLKPQDYS----LWNKLG  181 (265)
Q Consensus       118 ~~~~~~~a~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~  181 (265)
                      ..|++++|+..++++++..|++..++.            .+|.++...|++++|+..++++++..|+++.    ++..+|
T Consensus       200 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la  279 (359)
T 3ieg_A          200 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERIC  279 (359)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            555555555555555555555554332            2255556666666666666666666666653    355689


Q ss_pred             HHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618          182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR  257 (265)
Q Consensus       182 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  257 (265)
                      .++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.+...+++
T Consensus       280 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          280 HCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=1.2e-35  Score=237.12  Aligned_cols=253  Identities=14%  Similarity=0.139  Sum_probs=156.5

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      ++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|
T Consensus        29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  108 (450)
T 2y4t_A           29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG  108 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            45667777777788888887777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hHHHHHHHHHHHHhcCCCCC---CCc---------------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024618           90 EQAAALKYLYGWLRHHPKYG---TIA---------------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYN  151 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~---~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  151 (265)
                      ++++|+..|+++++..|++.   ..+               +..+...|++++|+..+++++...|.++.++..+|.++.
T Consensus       109 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  188 (450)
T 2y4t_A          109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI  188 (450)
T ss_dssp             CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            77777777777777777654   222               333555666666666666666666666655555555555


Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHH------------HHHHH
Q 024618          152 LSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM------------GISYA  219 (265)
Q Consensus       152 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~  219 (265)
                      ..|++++|+..++++++.+|.++.++..+|.++...|++++|+..|++++...|++...+..+            |.++.
T Consensus       189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (450)
T 2y4t_A          189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI  268 (450)
T ss_dssp             HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555555555555555555555555555444433332            44444


Q ss_pred             hcCCcHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHhCCccccc
Q 024618          220 NQGMYEESVRYYVRALAMNPKADN----AWQYLRISLRYAGRYPNRG  262 (265)
Q Consensus       220 ~~g~~~~A~~~~~~a~~~~~~~~~----~~~~l~~~~~~~~~~~~A~  262 (265)
                      ..|++++|+..|+++++..|+++.    .+..+|.++.+.|++++|+
T Consensus       269 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~  315 (450)
T 2y4t_A          269 RDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI  315 (450)
T ss_dssp             HHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            444444444444444444444321    3334444444444444443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=2.4e-35  Score=235.38  Aligned_cols=259  Identities=12%  Similarity=0.109  Sum_probs=242.2

Q ss_pred             CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH---HHHhhh--
Q 024618            7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL---EVLLSL--   81 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l--   81 (265)
                      ...++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++   .++..+  
T Consensus        60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  139 (450)
T 2y4t_A           60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK  139 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            345678899999999999999999999999999999999999999999999999999999999999988   776655  


Q ss_pred             ----------hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024618           82 ----------GVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGV  148 (265)
Q Consensus        82 ----------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  148 (265)
                                |.++...|++++|+..++++++..|.+...+   +.++...|++++|+..++++++.+|.++.++..+|.
T Consensus       140 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  219 (450)
T 2y4t_A          140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST  219 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                      6669999999999999999999999887766   899999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHhhcCcHHHHHHHHHHHhcCCcch----hhHH
Q 024618          149 LYNLSRQYDKAIESFQTALKLKPQDYSLWNKL------------GATQANSVQSADAILAYQRALDLKPNYV----RAWA  212 (265)
Q Consensus       149 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~  212 (265)
                      ++...|++++|+..+++++...|+++..+..+            |.++...|++++|+..|++++...|.++    ..+.
T Consensus       220 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~  299 (450)
T 2y4t_A          220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE  299 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            99999999999999999999999999887766            9999999999999999999999999975    4788


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      .+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|
T Consensus       300 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  352 (450)
T 2y4t_A          300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY  352 (450)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999998653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=100.00  E-value=8.6e-36  Score=231.27  Aligned_cols=245  Identities=12%  Similarity=0.062  Sum_probs=231.9

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCc-HHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDD-DQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      +..+|.++...|++++|+..+++++..+|++..+|..+|.++...|+ +++|+..|+++++++|++..+|..+|.++...
T Consensus       100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~  179 (382)
T 2h6f_A          100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL  179 (382)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence            46789999999999999999999999999999999999999999997 99999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHH-----
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL-SRQYDKA-----  159 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A-----  159 (265)
                      |++++|+..|+++++++|++...+   +.++...|++++|+..++++++++|++..+|..+|.++.. .|..++|     
T Consensus       180 g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~e  259 (382)
T 2h6f_A          180 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE  259 (382)
T ss_dssp             TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence            999999999999999999998888   9999999999999999999999999999999999999999 5655888     


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhhc--CcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC--------C-cHHHH
Q 024618          160 IESFQTALKLKPQDYSLWNKLGATQANSV--QSADAILAYQRALDLKPNYVRAWANMGISYANQG--------M-YEESV  228 (265)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~-~~~A~  228 (265)
                      +..+++++.++|++..+|..+|.++...|  ++++|+..++++ +.+|+++.++..+|.++..+|        + +++|+
T Consensus       260 l~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~  338 (382)
T 2h6f_A          260 VQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL  338 (382)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            59999999999999999999999999988  799999999998 899999999999999999985        2 58999


Q ss_pred             HHHHHH-HhcCCCCchhHHHHHHHHHHh
Q 024618          229 RYYVRA-LAMNPKADNAWQYLRISLRYA  255 (265)
Q Consensus       229 ~~~~~a-~~~~~~~~~~~~~l~~~~~~~  255 (265)
                      ++|+++ ++++|.....|..++..+...
T Consensus       339 ~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          339 ELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence            999999 999999999999999988764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-35  Score=215.50  Aligned_cols=237  Identities=16%  Similarity=0.179  Sum_probs=227.2

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-------HHHHhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-------LEVLLSL   81 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l   81 (265)
                      .++.+|..++..|++++|+..++++++.+ .++.++..+|.++...|++++|+..++++++..|.+       +.++..+
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l   85 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI   85 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence            46788999999999999999999999999 899999999999999999999999999999998876       7899999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE  161 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  161 (265)
                      |.++...|++++|+..++++++..|.     +.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.
T Consensus        86 ~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  160 (258)
T 3uq3_A           86 GNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK  160 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999999999999999999887     6788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC---
Q 024618          162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMN---  238 (265)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---  238 (265)
                      .++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+++++++++   
T Consensus       161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  240 (258)
T 3uq3_A          161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV  240 (258)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             ---CCCchhHHHHHHH
Q 024618          239 ---PKADNAWQYLRIS  251 (265)
Q Consensus       239 ---~~~~~~~~~l~~~  251 (265)
                         |++..++..++.+
T Consensus       241 ~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          241 NNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HTTTTHHHHHHHHHHT
T ss_pred             cCCCchHHHHHHHHHh
Confidence               8888888777765

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-34  Score=239.49  Aligned_cols=257  Identities=17%  Similarity=0.149  Sum_probs=235.2

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      .+..+|..+...|++++|+..|++++..+|.+..++..++.++...|++++|+..++++++..|+++.++..+|.++...
T Consensus       307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  386 (597)
T 2xpi_A          307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV  386 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT  165 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  165 (265)
                      |++++|+..|+++++..|.+...+   +..+...|++++|+..|+++++..|.+..++..++.++...|++++|+..|++
T Consensus       387 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  466 (597)
T 2xpi_A          387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS  466 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999998877666   88889999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc------CCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC
Q 024618          166 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL------KPNY-VRAWANMGISYANQGMYEESVRYYVRALAMN  238 (265)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  238 (265)
                      +++..|.++.++..+|.++...|++++|+..|+++++.      +|+. ..++..+|.++...|++++|+..++++++.+
T Consensus       467 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  546 (597)
T 2xpi_A          467 SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS  546 (597)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999887      5554 6788999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHhCCcccccccC
Q 024618          239 PKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       239 ~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      |+++.++..++.++...|++++|.+.|
T Consensus       547 p~~~~~~~~l~~~~~~~g~~~~A~~~~  573 (597)
T 2xpi_A          547 TNDANVHTAIALVYLHKKIPGLAITHL  573 (597)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999999999999999987653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=4.2e-35  Score=238.81  Aligned_cols=254  Identities=16%  Similarity=0.151  Sum_probs=199.4

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      .++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...
T Consensus        27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  106 (537)
T 3fp2_A           27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL  106 (537)
T ss_dssp             HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCC-------------------------------------------------------------
Q 024618           89 LEQAAALKYLYGWLRHHPK-------------------------------------------------------------  107 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~-------------------------------------------------------------  107 (265)
                      |++++|+..|+ .+...|+                                                             
T Consensus       107 g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (537)
T 3fp2_A          107 GNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT  185 (537)
T ss_dssp             TCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred             CCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence            98888887774 4443333                                                             


Q ss_pred             -------------------------------------------------CCCCc----------hhhhhhhhchHHHHHH
Q 024618          108 -------------------------------------------------YGTIA----------PPELSDSLYYADVARL  128 (265)
Q Consensus       108 -------------------------------------------------~~~~~----------~~~~~~~~~~~~a~~~  128 (265)
                                                                       +...+          +..+...|++++|+..
T Consensus       186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~  265 (537)
T 3fp2_A          186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL  265 (537)
T ss_dssp             CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence                                                             22111          3455556666777777


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch
Q 024618          129 FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV  208 (265)
Q Consensus       129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  208 (265)
                      +++++..+|+ ..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++..+|.++
T Consensus       266 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  344 (537)
T 3fp2_A          266 LQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV  344 (537)
T ss_dssp             HHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred             HHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence            7777777776 667777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          209 RAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      .++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..
T Consensus       345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  400 (537)
T 3fp2_A          345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ  400 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=100.00  E-value=6.8e-35  Score=217.84  Aligned_cols=249  Identities=14%  Similarity=0.107  Sum_probs=223.5

Q ss_pred             CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH----HHHhhhh
Q 024618            7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL----EVLLSLG   82 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la   82 (265)
                      ...++..|..++..|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++ .|.++    .++..+|
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999 44443    4589999


Q ss_pred             hhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 024618           83 VSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA  159 (265)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  159 (265)
                      .++...|++++|+..++++++.+|.+...+   +.++...|++++|+..++++++.+|.++.++..+|......+++++|
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988777   99999999999999999999999999999999999555556699999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhhcC---cHHHHHHHHHHHhcC---Cc-----chhhHHHHHHHHHhcCCcHHHH
Q 024618          160 IESFQTALKLKPQDYSLWNKLGATQANSVQ---SADAILAYQRALDLK---PN-----YVRAWANMGISYANQGMYEESV  228 (265)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---~~-----~~~~~~~l~~~~~~~g~~~~A~  228 (265)
                      +..++++++.+|+++.++..+|.++...|+   +++|+..++++++..   |+     ...++..+|.++...|++++|+
T Consensus       162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999   999999999999885   44     2368889999999999999999


Q ss_pred             HHHHHHHhcCCCCchhHHHHHHHHHHhC
Q 024618          229 RYYVRALAMNPKADNAWQYLRISLRYAG  256 (265)
Q Consensus       229 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~  256 (265)
                      .+++++++++|+++.++..++.+....+
T Consensus       242 ~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          242 AAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             HHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence            9999999999999999998888766544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=2.9e-35  Score=229.02  Aligned_cols=249  Identities=21%  Similarity=0.236  Sum_probs=223.6

Q ss_pred             HHHHcCChHHHHH-HHHHHHHhCCCCh----HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618           16 ELFRKGLLSEAVL-ALEAEVLKNPENS----EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE   90 (265)
Q Consensus        16 ~~~~~~~~~~A~~-~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   90 (265)
                      ++...|++++|+. .+++++...|.++    ..++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|+
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence            6677899999999 9999998888764    5689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHH----------------HHHHHHH
Q 024618           91 QAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHI----------------VLGVLYN  151 (265)
Q Consensus        91 ~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~l~~~~~  151 (265)
                      +++|+..++++++.+|++...+   +.++...|++++|+..+++++...|.+...+.                .++.++ 
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  192 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-  192 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence            9999999999999999987766   89999999999999999999999998876654                456666 


Q ss_pred             HccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHH
Q 024618          152 LSRQYDKAIESFQTALKLKPQ--DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVR  229 (265)
Q Consensus       152 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  229 (265)
                      ..|++++|+..++++++.+|.  ++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+.
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  272 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999  899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          230 YYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       230 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      .|+++++.+|+++.++..+|.++...|++++|+..|
T Consensus       273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  308 (368)
T 1fch_A          273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF  308 (368)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999999999999998653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=5.9e-34  Score=205.72  Aligned_cols=207  Identities=21%  Similarity=0.257  Sum_probs=146.2

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN   87 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   87 (265)
                      ..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~   85 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA   85 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34567788888888888888888888888888888888888888888888888888888888888888888888877765


Q ss_pred             hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618           88 ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL  167 (265)
Q Consensus        88 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  167 (265)
                      .+...                    .......|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++
T Consensus        86 ~~~~~--------------------~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  145 (217)
T 2pl2_A           86 LYRQA--------------------EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQAL  145 (217)
T ss_dssp             HHHTC--------------------SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhh--------------------hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            53110                    0122345777777777777777777777777777777777777777777777777


Q ss_pred             hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618          168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL  235 (265)
Q Consensus       168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  235 (265)
                      +++ +++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++-
T Consensus       146 ~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          146 ALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             hcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            777 7777777777777777777777777777777777777777777777777777777777777653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.4e-33  Score=227.77  Aligned_cols=248  Identities=17%  Similarity=0.110  Sum_probs=236.3

Q ss_pred             CCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618            6 GHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH   85 (265)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   85 (265)
                      ....+...+.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.+|+++++.+|.+..++..++.++
T Consensus       338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  417 (597)
T 2xpi_A          338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSF  417 (597)
T ss_dssp             CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 024618           86 TNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIES  162 (265)
Q Consensus        86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  162 (265)
                      ...|++++|+..|+++++..|++...+   +..+...|++++|+..|+++++..|.++.++..+|.++...|++++|+..
T Consensus       418 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  497 (597)
T 2xpi_A          418 AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINH  497 (597)
T ss_dssp             HHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            999999999999999999999887766   88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh------CCCC-HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618          163 FQTALKL------KPQD-YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL  235 (265)
Q Consensus       163 ~~~~~~~------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  235 (265)
                      |+++++.      +|++ ..++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...|++++|++.|++++
T Consensus       498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  577 (597)
T 2xpi_A          498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL  577 (597)
T ss_dssp             HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            9999988      5654 78999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCchhHHHHHHHHH
Q 024618          236 AMNPKADNAWQYLRISLR  253 (265)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~  253 (265)
                      +++|+++.++..++.+|.
T Consensus       578 ~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          578 AISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHCTTCHHHHHHHHHTTC
T ss_pred             hcCCCChHHHHHHHHHHh
Confidence            999999999999998764

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=100.00  E-value=2.8e-35  Score=229.05  Aligned_cols=238  Identities=22%  Similarity=0.190  Sum_probs=211.0

Q ss_pred             HHHHHHHHhCCCCh----HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618           28 LALEAEVLKNPENS----EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR  103 (265)
Q Consensus        28 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  103 (265)
                      ..+.+.+...+.++    ..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  127 (365)
T 4eqf_A           48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE  127 (365)
T ss_dssp             -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            33444444444444    45999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHH----------HHHHHHccCHHHHHHHHHHHHhhC
Q 024618          104 HHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVL----------GVLYNLSRQYDKAIESFQTALKLK  170 (265)
Q Consensus       104 ~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~A~~~~~~~~~~~  170 (265)
                      .+|++...+   +.++...|++++|+..++++++..|++...+..+          |.++...|++++|+..++++++.+
T Consensus       128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  207 (365)
T 4eqf_A          128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN  207 (365)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred             cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence            999987766   8999999999999999999999999876665554          999999999999999999999999


Q ss_pred             CC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHH
Q 024618          171 PQ--DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL  248 (265)
Q Consensus       171 ~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l  248 (265)
                      |.  ++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus       208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  287 (365)
T 4eqf_A          208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL  287 (365)
T ss_dssp             CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            99  8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCcccccccC
Q 024618          249 RISLRYAGRYPNRGDIF  265 (265)
Q Consensus       249 ~~~~~~~~~~~~A~~~~  265 (265)
                      |.++..+|++++|+..|
T Consensus       288 ~~~~~~~g~~~~A~~~~  304 (365)
T 4eqf_A          288 GISCINLGAYREAVSNF  304 (365)
T ss_dssp             HHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHH
Confidence            99999999999998653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=100.00  E-value=1e-34  Score=225.23  Aligned_cols=222  Identities=11%  Similarity=0.087  Sum_probs=211.3

Q ss_pred             HHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh-HHHHHHHHHHHHhcCCCCCCCc
Q 024618           34 VLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE-QAAALKYLYGWLRHHPKYGTIA  112 (265)
Q Consensus        34 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~  112 (265)
                      +..+|++..++..+|.++...|++++|+..++++++++|++..+|..+|.++...|+ +++|+..++++++++|++...+
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            455677788999999999999999999999999999999999999999999999997 9999999999999999998888


Q ss_pred             ---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hc
Q 024618          113 ---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN-SV  188 (265)
Q Consensus       113 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~  188 (265)
                         +.++...|++++|+..|+++++++|++..+|..+|.++...|++++|+..++++++++|+++.+|+.+|.++.. .|
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~  249 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  249 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999 56


Q ss_pred             CcHHH-----HHHHHHHHhcCCcchhhHHHHHHHHHhcC--CcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhC
Q 024618          189 QSADA-----ILAYQRALDLKPNYVRAWANMGISYANQG--MYEESVRYYVRALAMNPKADNAWQYLRISLRYAG  256 (265)
Q Consensus       189 ~~~~A-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  256 (265)
                      ..++|     +.+|++++.++|++..+|..+|.++...|  ++++|++.++++ +.+|+++.++..+|.++.++|
T Consensus       250 ~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~  323 (382)
T 2h6f_A          250 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDML  323 (382)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence            55888     59999999999999999999999999988  699999999998 999999999999999999985

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=5.2e-33  Score=200.76  Aligned_cols=204  Identities=16%  Similarity=0.124  Sum_probs=174.6

Q ss_pred             CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hh
Q 024618           38 PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PP  114 (265)
Q Consensus        38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~  114 (265)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++...+   +.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            778899999999999999999999999999999999999999999999999999999999999999999986554   33


Q ss_pred             hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHH
Q 024618          115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI  194 (265)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  194 (265)
                      ++...+.             ..+.          .....|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus        82 ~~~~~~~-------------~~~~----------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~  138 (217)
T 2pl2_A           82 AYVALYR-------------QAED----------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE  138 (217)
T ss_dssp             HHHHHHH-------------TCSS----------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhhh-------------hhhh----------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHH
Confidence            3332211             1111          2345699999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          195 LAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      ..|+++++.+ +++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|
T Consensus       139 ~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~  208 (217)
T 2pl2_A          139 ASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAA  208 (217)
T ss_dssp             HHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----------
T ss_pred             HHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence            9999999999 899999999999999999999999999999999999999999999999999999998765

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=228.85  Aligned_cols=253  Identities=15%  Similarity=0.114  Sum_probs=178.1

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      .++.+|..++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...
T Consensus         8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   86 (514)
T 2gw1_A            8 ALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL   86 (514)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence            457788888889999999999999988888 5888888899999999999999999999988888888888888888888


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCc--------------------------------------------------------
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIA--------------------------------------------------------  112 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~--------------------------------------------------------  112 (265)
                      |++++|+..|++++...|......                                                        
T Consensus        87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
T 2gw1_A           87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS  166 (514)
T ss_dssp             TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence            888888888888888776332111                                                        


Q ss_pred             --------------------------hhhhh---hhhchHHHHHHHHHHHh-----c--C-------CCCHHHHHHHHHH
Q 024618          113 --------------------------PPELS---DSLYYADVARLFVEAAR-----M--S-------PEDADVHIVLGVL  149 (265)
Q Consensus       113 --------------------------~~~~~---~~~~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~l~~~  149 (265)
                                                +..+.   ..|++++|+..++++++     .  .       |.+..++..+|.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (514)
T 2gw1_A          167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF  246 (514)
T ss_dssp             HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence                                      11122   25667777777777766     4  2       3334566666667


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHH
Q 024618          150 YNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVR  229 (265)
Q Consensus       150 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  229 (265)
                      +...|++++|+..++++++..|. +.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.
T Consensus       247 ~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  325 (514)
T 2gw1_A          247 KFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK  325 (514)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            77777777777777766666666 66666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618          230 YYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       230 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      .++++++..|+++.++..+|.++...|++++|+.
T Consensus       326 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  359 (514)
T 2gw1_A          326 DFDKAKELDPENIFPYIQLACLAYRENKFDDCET  359 (514)
T ss_dssp             HHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred             HHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            6666666666655566666666666666555544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-33  Score=225.14  Aligned_cols=258  Identities=12%  Similarity=0.021  Sum_probs=238.7

Q ss_pred             CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-------------
Q 024618            7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT-------------   73 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------   73 (265)
                      ...++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++...|.             
T Consensus        39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (514)
T 2gw1_A           39 PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL  118 (514)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHH
Confidence            4457789999999999999999999999999999999999999999999999999999999988763             


Q ss_pred             ------------------------------------------------------------------hHHHHhhhhhhhhh
Q 024618           74 ------------------------------------------------------------------NLEVLLSLGVSHTN   87 (265)
Q Consensus        74 ------------------------------------------------------------------~~~~~~~la~~~~~   87 (265)
                                                                                        ++.++..+|.++..
T Consensus       119 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (514)
T 2gw1_A          119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLY  198 (514)
T ss_dssp             HHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence                                                                              26666777777665


Q ss_pred             ---hhhHHHHHHHHHHHHh-----c--CCCCC-------CCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024618           88 ---ELEQAAALKYLYGWLR-----H--HPKYG-------TIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLG  147 (265)
Q Consensus        88 ---~~~~~~A~~~~~~~~~-----~--~~~~~-------~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~  147 (265)
                         .|++++|+..++++++     .  .|++.       ..+   +.++...|++++|+..+++++..+|. ..++..+|
T Consensus       199 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~  277 (514)
T 2gw1_A          199 KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMA  277 (514)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred             hhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHH
Confidence               8999999999999999     5  55542       122   88899999999999999999999999 99999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHH
Q 024618          148 VLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEES  227 (265)
Q Consensus       148 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  227 (265)
                      .++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|
T Consensus       278 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  357 (514)
T 2gw1_A          278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC  357 (514)
T ss_dssp             HHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          228 VRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       228 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      +..++++++..|+++.++..+|.++...|++++|+..|
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  395 (514)
T 2gw1_A          358 ETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY  395 (514)
T ss_dssp             HHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999987653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=4.9e-33  Score=226.62  Aligned_cols=248  Identities=15%  Similarity=0.139  Sum_probs=222.6

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCChH-------HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           17 LFRKGLLSEAVLALEAEVLKNPENSE-------GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        17 ~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      ....|++++|+..++++++.+|+++.       ++..+|.++...|++++|+..++++++.+|+ +.++..+|.++...|
T Consensus       212 ~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  290 (537)
T 3fp2_A          212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKE  290 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhc
Confidence            33446899999999999999999865       4677888899999999999999999999998 899999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618           90 EQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA  166 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  166 (265)
                      ++++|+..++++++..|+++..+   +.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++
T Consensus       291 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  370 (537)
T 3fp2_A          291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNET  370 (537)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999887766   889999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh------HHHHHHHHHhc----------CCcHHHHHH
Q 024618          167 LKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRA------WANMGISYANQ----------GMYEESVRY  230 (265)
Q Consensus       167 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~~----------g~~~~A~~~  230 (265)
                      ++..|+++.++..+|.++...|++++|+..|+++++..|.+...      +..+|.++...          |++++|+..
T Consensus       371 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~  450 (537)
T 3fp2_A          371 KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL  450 (537)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence            99999999999999999999999999999999999988776543      45667888888          999999999


Q ss_pred             HHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          231 YVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       231 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      |+++++.+|+++.++..+|.++...|++++|++.|
T Consensus       451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  485 (537)
T 3fp2_A          451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF  485 (537)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence            99999999999999999999999999999987653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=100.00  E-value=1.1e-31  Score=197.03  Aligned_cols=221  Identities=17%  Similarity=0.139  Sum_probs=180.6

Q ss_pred             CCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhh
Q 024618            5 VGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVS   84 (265)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   84 (265)
                      .....++.+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  100 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV  100 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            44556788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024618           85 HTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQ  164 (265)
Q Consensus        85 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  164 (265)
                      +...|++++|+..++++++                               ..|.++.++..+|.++...|++++|+..++
T Consensus       101 ~~~~~~~~~A~~~~~~~~~-------------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  149 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALR-------------------------------AGMENGDLFYMLGTVLVKLEQPKLALPYLQ  149 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHH-------------------------------HTCCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHH-------------------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            9888888777766655554                               456678889999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618          165 TALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA  244 (265)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  244 (265)
                      ++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++++++.+|+++.+
T Consensus       150 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  229 (243)
T 2q7f_A          150 RAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA  229 (243)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC
Q 024618          245 WQYLRISLRYAG  256 (265)
Q Consensus       245 ~~~l~~~~~~~~  256 (265)
                      +..++.+....|
T Consensus       230 ~~~~~~l~~~~~  241 (243)
T 2q7f_A          230 LHAKKLLGHHHH  241 (243)
T ss_dssp             HHHHTC------
T ss_pred             HHHHHHHHhhcc
Confidence            988887765544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=100.00  E-value=8.1e-32  Score=206.11  Aligned_cols=233  Identities=15%  Similarity=0.123  Sum_probs=216.2

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhh------
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSL------   81 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------   81 (265)
                      ..++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|.+...+..+      
T Consensus        56 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (327)
T 3cv0_A           56 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD  135 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHH
Confidence            34677899999999999999999999999999999999999999999999999999999999999998887777      


Q ss_pred             --------hh-hhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024618           82 --------GV-SHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVL  149 (265)
Q Consensus        82 --------a~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  149 (265)
                              +. ++...|++++|+..++++++..|.+...+   +.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  215 (327)
T 3cv0_A          136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT  215 (327)
T ss_dssp             ----------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence                    77 78999999999999999999999877665   8899999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc------------chhhHHHHHHH
Q 024618          150 YNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN------------YVRAWANMGIS  217 (265)
Q Consensus       150 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~  217 (265)
                      +...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++...|.            ++.++..+|.+
T Consensus       216 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  295 (327)
T 3cv0_A          216 LANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML  295 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999            78999999999


Q ss_pred             HHhcCCcHHHHHHHHHHHhcCCC
Q 024618          218 YANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       218 ~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      +..+|++++|...++++++..|+
T Consensus       296 ~~~~g~~~~A~~~~~~~l~~~~~  318 (327)
T 3cv0_A          296 LNVMNRPDLVELTYAQNVEPFAK  318 (327)
T ss_dssp             HHHTTCHHHHHHHTTCCSHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHhcch
Confidence            99999999999999988876554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.4e-31  Score=213.60  Aligned_cols=254  Identities=13%  Similarity=0.066  Sum_probs=189.5

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHh---------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC--------CC
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLK---------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAE--------PT   73 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~   73 (265)
                      ..+|.++...|++++|+..|+++++.         +|....++.++|.+|..+|++++|+.++++++++.        +.
T Consensus        55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~  134 (472)
T 4g1t_A           55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE  134 (472)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence            35799999999999999999999875         46667788899999999999999999999998763        34


Q ss_pred             hHHHHhhhhhhhhh--hhhHHHHHHHHHHHHhcCCCCCCCc---hhh---hhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q 024618           74 NLEVLLSLGVSHTN--ELEQAAALKYLYGWLRHHPKYGTIA---PPE---LSDSLYYADVARLFVEAARMSPEDADVHIV  145 (265)
Q Consensus        74 ~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  145 (265)
                      .+.++..+|.++..  .+++++|+.+|+++++.+|+++..+   +.+   +...++.++|+..++++++++|+++.++..
T Consensus       135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~  214 (472)
T 4g1t_A          135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL  214 (472)
T ss_dssp             CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence            56778888776655  4579999999999999999887665   333   233455567777777777777777777777


Q ss_pred             HHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618          146 LGVLYNL----SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ  221 (265)
Q Consensus       146 l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  221 (265)
                      +|..+..    .|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...
T Consensus       215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~  294 (472)
T 4g1t_A          215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK  294 (472)
T ss_dssp             HHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            7655543    356677777777777777777777777777777777777777777777777777777777777766442


Q ss_pred             -------------------CCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          222 -------------------GMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       222 -------------------g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                                         +.+++|+..++++++.+|.+..++..+|.++...|++++|+++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~  356 (472)
T 4g1t_A          295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY  356 (472)
T ss_dssp             HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHH
Confidence                               2356677777777777777777777777777777777777654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=100.00  E-value=4.7e-32  Score=202.62  Aligned_cols=250  Identities=14%  Similarity=0.022  Sum_probs=219.7

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhC----CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKN----PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT   86 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   86 (265)
                      +..+......|++++|+..++++++..    |.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~   88 (275)
T 1xnf_A            9 EVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT   88 (275)
T ss_dssp             GGSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             cceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            445555667799999999999999874    4567799999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618           87 NELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF  163 (265)
Q Consensus        87 ~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  163 (265)
                      ..|++++|+..++++++.+|++...+   +.++...|++++|+..++++++..|++.......+.. ...|++++|+..+
T Consensus        89 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~  167 (275)
T 1xnf_A           89 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVL  167 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHH
Confidence            99999999999999999999988766   8999999999999999999999999998766666544 6679999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618          164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY----VRAWANMGISYANQGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  239 (265)
                      ++++...|.+...+. ++.++...++.++|+..+++++...|..    +.++..+|.++...|++++|+..|+++++.+|
T Consensus       168 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  246 (275)
T 1xnf_A          168 KQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  246 (275)
T ss_dssp             HHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence            999999998876654 7777888899999999999999887743    68899999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHhCCcccccccC
Q 024618          240 KADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       240 ~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      ++...   .+.++..+|++++|++.|
T Consensus       247 ~~~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          247 HNFVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             TTCHH---HHHHHHHHHHHHHC----
T ss_pred             hhHHH---HHHHHHHHHHHHhhHHHH
Confidence            77543   477888999999988753

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.98  E-value=2.4e-31  Score=198.62  Aligned_cols=225  Identities=12%  Similarity=0.066  Sum_probs=205.4

Q ss_pred             ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC----c---
Q 024618           40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI----A---  112 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~---  112 (265)
                      +++.++..|.+++..|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++ .|.++..    +   
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY   80 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999999999 5555554    2   


Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (265)
                      |.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|......+++++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999955555569999


Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHHhcCC---cHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHHhCCcccc
Q 024618          193 AILAYQRALDLKPNYVRAWANMGISYANQGM---YEESVRYYVRALAMN---PKA-----DNAWQYLRISLRYAGRYPNR  261 (265)
Q Consensus       193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~---~~~-----~~~~~~l~~~~~~~~~~~~A  261 (265)
                      |+..|+++++.+|+++.++..+|.++...|+   +++|+..++++++..   |+.     ..++..+|.++...|++++|
T Consensus       161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  240 (272)
T 3u4t_A          161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA  240 (272)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999999   999999999999886   442     26888899999999999999


Q ss_pred             cccC
Q 024618          262 GDIF  265 (265)
Q Consensus       262 ~~~~  265 (265)
                      ++.|
T Consensus       241 ~~~~  244 (272)
T 3u4t_A          241 DAAW  244 (272)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.98  E-value=1.5e-30  Score=209.03  Aligned_cols=256  Identities=17%  Similarity=0.133  Sum_probs=171.1

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhC--------CCChHHHHHHHHHHhh--cCcHHHHHHHHHHHHhcCCChHHHHh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKN--------PENSEGWRLLGIAHAE--NDDDQQAIAAMMRAHEAEPTNLEVLL   79 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~   79 (265)
                      +..+|.++...|++++|+..+++++...        +..+.++..+|.++..  .+++++|+.+|+++++++|+++.++.
T Consensus        97 ~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~  176 (472)
T 4g1t_A           97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTS  176 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3467888888888888888888887652        3445677777766554  45688888888888888888888888


Q ss_pred             hhhhhhhhh---hhHHHHHHHHHHHHhcCCCCCCCc-------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024618           80 SLGVSHTNE---LEQAAALKYLYGWLRHHPKYGTIA-------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVL  149 (265)
Q Consensus        80 ~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  149 (265)
                      .++.++...   ++.++|+..++++++++|++....       +.+....+++++|...+++++..+|..+.++..+|.+
T Consensus       177 ~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~  256 (472)
T 4g1t_A          177 GLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF  256 (472)
T ss_dssp             HHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            877776554   344667777777777777765544       2233344566667777777777777777777777777


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHH---------------------------------------------------
Q 024618          150 YNLSRQYDKAIESFQTALKLKPQDYSLWN---------------------------------------------------  178 (265)
Q Consensus       150 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---------------------------------------------------  178 (265)
                      +...|++++|+..++++++.+|+++.++.                                                   
T Consensus       257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  336 (472)
T 4g1t_A          257 YRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV  336 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCC
T ss_pred             HHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhh
Confidence            77777777777777777666666655544                                                   


Q ss_pred             --HHHHHHHhhcCcHHHHHHHHHHHhcCCcchh---hHHHHHHH-HHhcCCcHHHHHHHHHHHhc---------------
Q 024618          179 --KLGATQANSVQSADAILAYQRALDLKPNYVR---AWANMGIS-YANQGMYEESVRYYVRALAM---------------  237 (265)
Q Consensus       179 --~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~-~~~~g~~~~A~~~~~~a~~~---------------  237 (265)
                        .+|.++...|++++|+..|+++++..|++..   ++..+|.+ ....|++++|+..|++++++               
T Consensus       337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~  416 (472)
T 4g1t_A          337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ  416 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence              4555566677788888888888877766532   34555544 44677788888888777765               


Q ss_pred             ---------CCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          238 ---------NPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       238 ---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                               +|+++.++..+|.++...|++++|+++|
T Consensus       417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y  453 (472)
T 4g1t_A          417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS  453 (472)
T ss_dssp             HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                     4556678888888998889888888765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.5e-31  Score=198.00  Aligned_cols=217  Identities=12%  Similarity=0.090  Sum_probs=204.6

Q ss_pred             ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCC-------CCc
Q 024618           40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYG-------TIA  112 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~  112 (265)
                      ....+..+|.++...|++++|+.+++++++.+ .++.++..+|.++...|++++|+..++++++..|+..       ..+
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            46788999999999999999999999999999 8999999999999999999999999999999988763       222


Q ss_pred             ---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC
Q 024618          113 ---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ  189 (265)
Q Consensus       113 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  189 (265)
                         +.++...|++++|+..+++++...|.        +.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence               88999999999999999999999987        5667888999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      +++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|++.|
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  230 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL  230 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999997653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.98  E-value=8.5e-32  Score=211.88  Aligned_cols=257  Identities=16%  Similarity=0.094  Sum_probs=225.8

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHhhcCcHHHHHHHHHHHHhc------CCChHHHH
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENS----EGWRLLGIAHAENDDDQQAIAAMMRAHEA------EPTNLEVL   78 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~   78 (265)
                      .++..|..+...|++++|+..|++++...|.++    .++..+|.++...|++++|+.++++++..      .|....++
T Consensus        11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   90 (406)
T 3sf4_A           11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   90 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            457889999999999999999999999999885    57889999999999999999999999887      34457799


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC------Cc---hhhhhhhhc--------------------hHHHHHHH
Q 024618           79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGT------IA---PPELSDSLY--------------------YADVARLF  129 (265)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~---~~~~~~~~~--------------------~~~a~~~~  129 (265)
                      ..+|.++...|++++|+..+++++...|....      .+   +.++...|+                    +++|+..+
T Consensus        91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  170 (406)
T 3sf4_A           91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY  170 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999998776443      22   888999999                    99999999


Q ss_pred             HHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhhcCcHHHHHHH
Q 024618          130 VEAARM------SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYS------LWNKLGATQANSVQSADAILAY  197 (265)
Q Consensus       130 ~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~  197 (265)
                      ++++..      .|....++..+|.++...|++++|+..++++++..|....      ++..+|.++...|++++|+..+
T Consensus       171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  250 (406)
T 3sf4_A          171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY  250 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            999876      3344568999999999999999999999999988665543      8999999999999999999999


Q ss_pred             HHHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHhCCcccccccC
Q 024618          198 QRALDLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMNPKA------DNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       198 ~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      ++++...|..      ..++..+|.++...|++++|+.++++++++.+..      ..++..+|.++...|++++|+..|
T Consensus       251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  330 (406)
T 3sf4_A          251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA  330 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999886654      6788899999999999999999999999885544      568889999999999999998653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.97  E-value=1.7e-30  Score=195.44  Aligned_cols=227  Identities=13%  Similarity=0.019  Sum_probs=143.9

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--CCChHHHHhhhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--EPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~   88 (265)
                      +.+++.++..|++++|+..++.   .+|....++..++..+...++.++|++.+++++..  +|+++.+++.+|.++...
T Consensus        38 ~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~  114 (291)
T 3mkr_A           38 VFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD  114 (291)
T ss_dssp             HHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence            3346666666666666665544   13434455566666666666677777777666654  466666667777777777


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHccCHHHHHHHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLG--VLYNLSRQYDKAIESF  163 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~  163 (265)
                      |++++|+..+++     |.+...+   +.++...|++++|+..++++++.+|++.......+  .++...|++++|+..|
T Consensus       115 g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~  189 (291)
T 3mkr_A          115 QNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIF  189 (291)
T ss_dssp             TCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred             CCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            777777766665     4433333   66666667777777777777666666553333322  2333446677777777


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHH-HHHHHHHHHhcCCCCc
Q 024618          164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE-SVRYYVRALAMNPKAD  242 (265)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~~~~~  242 (265)
                      +++++..|+++.++..+|.++...|++++|+..+++++..+|+++.++.++|.++...|++.+ +..+++++++.+|+++
T Consensus       190 ~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~  269 (291)
T 3mkr_A          190 QEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP  269 (291)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence            777766676666777777777777777777777777777777777777777777666776654 3466666777777665


Q ss_pred             hhH
Q 024618          243 NAW  245 (265)
Q Consensus       243 ~~~  245 (265)
                      .+.
T Consensus       270 ~~~  272 (291)
T 3mkr_A          270 FIK  272 (291)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.97  E-value=1.6e-30  Score=208.43  Aligned_cols=212  Identities=16%  Similarity=0.103  Sum_probs=162.5

Q ss_pred             CChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcH-HHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHH
Q 024618           21 GLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDD-QQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLY   99 (265)
Q Consensus        21 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~   99 (265)
                      +.+++++..+++.....|.+..+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4477788888888888898999999999999999999 999999999999999999999999999999999999998888


Q ss_pred             HHHhcCCCCCCCc---hhhhhhh---------hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------cCHHHH
Q 024618          100 GWLRHHPKYGTIA---PPELSDS---------LYYADVARLFVEAARMSPEDADVHIVLGVLYNLS--------RQYDKA  159 (265)
Q Consensus       100 ~~~~~~~~~~~~~---~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A  159 (265)
                      ++++.+|+ ...+   +.++...         |++++|+..++++++.+|+++.++..+|.++...        |++++|
T Consensus       162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A  240 (474)
T 4abn_A          162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA  240 (474)
T ss_dssp             HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence            88888776 2222   5666666         6677777777777777777777777777777666        667777


Q ss_pred             HHHHHHHHhhCC---CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHH
Q 024618          160 IESFQTALKLKP---QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR  233 (265)
Q Consensus       160 ~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  233 (265)
                      +..|+++++++|   .++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+.+
T Consensus       241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            777777777666   66667777777777777777777777777777777666667777777777766666665543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.97  E-value=2.4e-30  Score=194.64  Aligned_cols=241  Identities=11%  Similarity=0.024  Sum_probs=215.4

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPEN-SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ   91 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   91 (265)
                      ..+..+..|+|++|+..++++...+|++ .+....++.+|...|++++|+..++.   .+|....++..++..+...++.
T Consensus         5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence            4667789999999999999887777766 45778899999999999999988765   3666778899999999999999


Q ss_pred             HHHHHHHHHHHhc--CCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618           92 AAALKYLYGWLRH--HPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA  166 (265)
Q Consensus        92 ~~A~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  166 (265)
                      ++|++.+++++..  +|+++..+   |.++...|++++|+..+++     |.++.++..+|.++...|++++|+..++++
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  156 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKM  156 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999876  58877665   8999999999999999998     899999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHH--HHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618          167 LKLKPQDYSLWNKLG--ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA  244 (265)
Q Consensus       167 ~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  244 (265)
                      ++.+|++.......+  .++...|++++|+..|+++++..|+++.++..+|.++..+|++++|+..++++++.+|+++.+
T Consensus       157 ~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~  236 (291)
T 3mkr_A          157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET  236 (291)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            999999865444333  334456899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCcccc
Q 024618          245 WQYLRISLRYAGRYPNR  261 (265)
Q Consensus       245 ~~~l~~~~~~~~~~~~A  261 (265)
                      +.++|.++...|+.+++
T Consensus       237 l~~l~~~~~~~g~~~ea  253 (291)
T 3mkr_A          237 LINLVVLSQHLGKPPEV  253 (291)
T ss_dssp             HHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHcCCCHHH
Confidence            99999999999999764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.97  E-value=7.5e-30  Score=179.63  Aligned_cols=173  Identities=25%  Similarity=0.418  Sum_probs=149.5

Q ss_pred             CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhh
Q 024618           39 ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSD  118 (265)
Q Consensus        39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  118 (265)
                      +++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++                
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~----------------   66 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFV----------------   66 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------
Confidence            4677888999999999999999999999999999999999999999888888777776555444                


Q ss_pred             hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHH
Q 024618          119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQ  198 (265)
Q Consensus       119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  198 (265)
                                     ...|+++.++..+|.++...++++.|...+.+++...|.++.++..+|.++...|++++|+..|+
T Consensus        67 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  131 (184)
T 3vtx_A           67 ---------------VLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE  131 (184)
T ss_dssp             ---------------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ---------------hcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence                           44566788888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618          199 RALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       199 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  242 (265)
                      ++++.+|.++.++..+|.++..+|++++|+.+|+++++++|+++
T Consensus       132 ~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          132 KTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            99999999999999999999999999999999999999888754

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.97  E-value=1.8e-29  Score=186.41  Aligned_cols=210  Identities=14%  Similarity=0.101  Sum_probs=174.3

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      ++.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|
T Consensus        40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  119 (252)
T 2ho1_A           40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK  119 (252)
T ss_dssp             HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence            45567777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618           90 EQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL  169 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  169 (265)
                      ++++|+..+++++. .|                            ..|.+..++..+|.++...|++++|+..++++++.
T Consensus       120 ~~~~A~~~~~~~~~-~~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  170 (252)
T 2ho1_A          120 RYEEAYQRLLEASQ-DT----------------------------LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL  170 (252)
T ss_dssp             CHHHHHHHHHHHTT-CT----------------------------TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-Cc----------------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            76666666655554 11                            46777889999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHH
Q 024618          170 KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL  248 (265)
Q Consensus       170 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l  248 (265)
                      .|.++.++..+|.++...|++++|+..++++++..|.+..++..++.++...|++++|..+++++++..|+++.+...+
T Consensus       171 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988776543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.97  E-value=4.9e-31  Score=202.18  Aligned_cols=257  Identities=16%  Similarity=0.099  Sum_probs=224.4

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHhhcCcHHHHHHHHHHHHhc------CCChHHHH
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENS----EGWRLLGIAHAENDDDQQAIAAMMRAHEA------EPTNLEVL   78 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~   78 (265)
                      .++..|..++..|++++|+..++++++..|.++    .++..+|.++...|++++|+.++++++..      .|....++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            456789999999999999999999999999984    57889999999999999999999999887      44557899


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC------Cc---hhhhhhhhc--------------------hHHHHHHH
Q 024618           79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGT------IA---PPELSDSLY--------------------YADVARLF  129 (265)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~---~~~~~~~~~--------------------~~~a~~~~  129 (265)
                      ..+|.++...|++++|+..++++++..+....      .+   +.++...|+                    +++|+..+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999998776543      22   888999999                    99999999


Q ss_pred             HHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHHH
Q 024618          130 VEAARM------SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQSADAILAY  197 (265)
Q Consensus       130 ~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~  197 (265)
                      ++++..      .+....++..+|.++...|++++|+..++++++..+..      ..++..+|.++...|++++|+..+
T Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  246 (338)
T 3ro2_A          167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY  246 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            998876      23345689999999999999999999999999875543      238999999999999999999999


Q ss_pred             HHHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHhCCcccccccC
Q 024618          198 QRALDLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMNPKA------DNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       198 ~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      ++++...+..      ..++..+|.++...|++++|+.+++++++..+..      ..++..+|.++...|++++|...|
T Consensus       247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  326 (338)
T 3ro2_A          247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA  326 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            9999886654      6788899999999999999999999999876543      347889999999999999998653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.97  E-value=1.8e-31  Score=210.58  Aligned_cols=256  Identities=18%  Similarity=0.112  Sum_probs=224.6

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHhhcCcHHHHHHHHHHHHhc------CCChHHHHh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENS----EGWRLLGIAHAENDDDQQAIAAMMRAHEA------EPTNLEVLL   79 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~   79 (265)
                      ++.+|..++..|++++|+..|+++++..|+++    .++..+|.++...|++++|+.+++++++.      .|....++.
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  130 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG  130 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence            45789999999999999999999999999987    47889999999999999999999999988      566788999


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC------Cc---hhhhhhhhc-----------------hHHHHHHHHHHH
Q 024618           80 SLGVSHTNELEQAAALKYLYGWLRHHPKYGT------IA---PPELSDSLY-----------------YADVARLFVEAA  133 (265)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~---~~~~~~~~~-----------------~~~a~~~~~~~~  133 (265)
                      .+|.++...|++++|+..+++++...+....      .+   +.++...|+                 +++|+..+++++
T Consensus       131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al  210 (411)
T 4a1s_A          131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL  210 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999987433221      22   889999999                 999999999988


Q ss_pred             hcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618          134 RMS------PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYS------LWNKLGATQANSVQSADAILAYQRAL  201 (265)
Q Consensus       134 ~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~  201 (265)
                      ...      +....++..+|.++...|++++|+..++++++..+....      ++..+|.++...|++++|+..+++++
T Consensus       211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  290 (411)
T 4a1s_A          211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL  290 (411)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            763      333568999999999999999999999999998765433      89999999999999999999999999


Q ss_pred             hcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHhCCcccccccC
Q 024618          202 DLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMNPKA------DNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       202 ~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      ...+..      ..++..+|.++...|++++|+.+++++++..+..      ..++..+|.++..+|++++|.+.|
T Consensus       291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  366 (411)
T 4a1s_A          291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA  366 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            887643      5788999999999999999999999999885543      358889999999999999998653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.97  E-value=5.5e-29  Score=180.44  Aligned_cols=211  Identities=16%  Similarity=0.108  Sum_probs=188.3

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      .++.+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++...
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~   89 (225)
T 2vq2_A           10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR   89 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence            45677888888999999999999988888888888888899998899999999999999888888888888888888888


Q ss_pred             -hhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618           89 -LEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL  167 (265)
Q Consensus        89 -~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  167 (265)
                       |++++|+..++++++ .|                            ..|.+..++..+|.++...|++++|+..+++++
T Consensus        90 ~~~~~~A~~~~~~~~~-~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  140 (225)
T 2vq2_A           90 LNRPAESMAYFDKALA-DP----------------------------TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL  140 (225)
T ss_dssp             TCCHHHHHHHHHHHHT-ST----------------------------TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHc-Cc----------------------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             888888877777666 22                            246678899999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC-cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618          168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP-NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ  246 (265)
Q Consensus       168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  246 (265)
                      +..|.++.++..+|.++...|++++|+..+++++...| .++..+..++.++...|++++|..+++.+.+.+|+++.+..
T Consensus       141 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  220 (225)
T 2vq2_A          141 AAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT  220 (225)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999999999999999999999999999 88999999999999999999999999999999999988765


Q ss_pred             HH
Q 024618          247 YL  248 (265)
Q Consensus       247 ~l  248 (265)
                      .+
T Consensus       221 ~l  222 (225)
T 2vq2_A          221 VL  222 (225)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.97  E-value=1.9e-28  Score=172.46  Aligned_cols=171  Identities=22%  Similarity=0.263  Sum_probs=158.5

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN   87 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   87 (265)
                      ..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++..
T Consensus         6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
T 3vtx_A            6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM   85 (184)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618           88 ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL  167 (265)
Q Consensus        88 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  167 (265)
                      .++++.|...+.+                               ++..+|.+..++..+|.++...|++++|+..|++++
T Consensus        86 ~~~~~~a~~~~~~-------------------------------a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l  134 (184)
T 3vtx_A           86 IDEKQAAIDALQR-------------------------------AIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI  134 (184)
T ss_dssp             TTCHHHHHHHHHH-------------------------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHH-------------------------------HHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            8887777765554                               445567778999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh
Q 024618          168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR  209 (265)
Q Consensus       168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  209 (265)
                      +.+|.++.++..+|.++..+|++++|+..|+++++.+|+++.
T Consensus       135 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          135 SIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            999999999999999999999999999999999999998753

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.97  E-value=4e-28  Score=176.63  Aligned_cols=208  Identities=12%  Similarity=0.088  Sum_probs=167.7

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNP-ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT   86 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   86 (265)
                      ..++.+|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   87 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR   87 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            4567788888888888888888888888887 777788888888888888888888888888888888888888888877


Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHccCHHHH
Q 024618           87 NELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDA-------DVHIVLGVLYNLSRQYDKA  159 (265)
Q Consensus        87 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A  159 (265)
                      ..|++++|                               +..++++++.+|+++       .++..+|.++...|++++|
T Consensus        88 ~~~~~~~A-------------------------------~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  136 (228)
T 4i17_A           88 DMKNNQEY-------------------------------IATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA  136 (228)
T ss_dssp             HTTCHHHH-------------------------------HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcccHHHH-------------------------------HHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH
Confidence            77765444                               466778899999888       6688889999999999999


Q ss_pred             HHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          160 IESFQTALKLKPQ--DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       160 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      +..|+++++.+|+  ++.++..+|.++...|+     ..++++..+.+..+..+  .+......+.+++|+.++++++++
T Consensus       137 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          137 EENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999998  88999999999876654     44666677666654433  444556677889999999999999


Q ss_pred             CCCCchhHHHHHHHHH
Q 024618          238 NPKADNAWQYLRISLR  253 (265)
Q Consensus       238 ~~~~~~~~~~l~~~~~  253 (265)
                      +|+++.+...++.+..
T Consensus       210 ~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          210 SPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             CTTCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999888887754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.96  E-value=1.1e-27  Score=181.95  Aligned_cols=221  Identities=12%  Similarity=0.050  Sum_probs=202.7

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHhh-------cCcH-------HHHHHHHHHHHh-cCCChHHHHhhhhhhhhhh
Q 024618           24 SEAVLALEAEVLKNPENSEGWRLLGIAHAE-------NDDD-------QQAIAAMMRAHE-AEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus        24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~   88 (265)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|+++++ +.|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            789999999999999999999999999874       5775       999999999999 7999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCC-Cc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHHHHHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGT-IA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL-SRQYDKAIESF  163 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  163 (265)
                      |++++|...|+++++..|.+.. .+   +.++...|++++|...|+++++..|....++...+.+... .|++++|+..|
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~  192 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999998875 45   8888899999999999999999999988888777666443 79999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc---CCc-chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618          164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL---KPN-YVRAWANMGISYANQGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  239 (265)
                      +++++.+|+++.+|..+|.++...|++++|+..|++++..   .|+ ...+|..++..+...|+.++|...++++++..|
T Consensus       193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999995   553 677899999999999999999999999999999


Q ss_pred             CCchh
Q 024618          240 KADNA  244 (265)
Q Consensus       240 ~~~~~  244 (265)
                      ++...
T Consensus       273 ~~~~~  277 (308)
T 2ond_A          273 EEYEG  277 (308)
T ss_dssp             TTTSS
T ss_pred             ccccc
Confidence            86544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.96  E-value=2.1e-27  Score=177.41  Aligned_cols=226  Identities=17%  Similarity=0.199  Sum_probs=204.4

Q ss_pred             CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhh----cCcHHHHHHHHHHHHhcCCChHHHHhhhh
Q 024618            7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAE----NDDDQQAIAAMMRAHEAEPTNLEVLLSLG   82 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la   82 (265)
                      ...++.+|..+...|++++|+..|+++++  |.++.+++.+|.++..    .+++++|+.+|+++++.+  ++.++..+|
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg   81 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   81 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence            34567899999999999999999999998  7889999999999999    999999999999999985  789999999


Q ss_pred             hhhhh----hhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhh----hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024618           83 VSHTN----ELEQAAALKYLYGWLRHHPKYGTIA---PPELSD----SLYYADVARLFVEAARMSPEDADVHIVLGVLYN  151 (265)
Q Consensus        83 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  151 (265)
                      .++..    .+++++|+..++++++..  ++..+   +.++..    .+++++|+.+++++++..  ++.++..+|.++.
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~  157 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD  157 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence            99999    999999999999999874  33333   788888    999999999999999876  5888999999999


Q ss_pred             H----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh---
Q 024618          152 L----SRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN----SVQSADAILAYQRALDLKPNYVRAWANMGISYAN---  220 (265)
Q Consensus       152 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---  220 (265)
                      .    .+++++|+..++++++.  .++.++..+|.++..    .+++++|+.+|+++++..|  +.++..+|.++..   
T Consensus       158 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~  233 (273)
T 1ouv_A          158 AGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG  233 (273)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred             cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence            8    99999999999999987  468899999999999    9999999999999999866  7889999999999   


Q ss_pred             -cCCcHHHHHHHHHHHhcCCCCchh
Q 024618          221 -QGMYEESVRYYVRALAMNPKADNA  244 (265)
Q Consensus       221 -~g~~~~A~~~~~~a~~~~~~~~~~  244 (265)
                       .+++++|+.+|+++++..|++...
T Consensus       234 ~~~~~~~A~~~~~~a~~~~~~~a~~  258 (273)
T 1ouv_A          234 VTRNEKQAIENFKKGCKLGAKGACD  258 (273)
T ss_dssp             SSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred             cccCHHHHHHHHHHHHHcCCHHHHH
Confidence             999999999999999998865433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.96  E-value=2.8e-27  Score=171.44  Aligned_cols=175  Identities=13%  Similarity=-0.034  Sum_probs=157.8

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhc-CcHHHHHHHHHHHHh--cCCChHHHHhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEN-DDDQQAIAAMMRAHE--AEPTNLEVLLSLGVSH   85 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~   85 (265)
                      .++.+|.++...|++++|+..+++++...|.++.++..+|.++... |++++|+..++++++  ..|.++.++..+|.++
T Consensus        44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  123 (225)
T 2vq2_A           44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS  123 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999 999999999999999  6777889999999999


Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618           86 TNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT  165 (265)
Q Consensus        86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  165 (265)
                      ...|++++|+..++++++                               ..|.++.++..+|.++...|++++|+..+++
T Consensus       124 ~~~~~~~~A~~~~~~~~~-------------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  172 (225)
T 2vq2_A          124 AKQGQFGLAEAYLKRSLA-------------------------------AQPQFPPAFKELARTKMLAGQLGDADYYFKK  172 (225)
T ss_dssp             HHTTCHHHHHHHHHHHHH-------------------------------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH-------------------------------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999988887766665554                               4566788899999999999999999999999


Q ss_pred             HHhhCC-CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHH
Q 024618          166 ALKLKP-QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM  214 (265)
Q Consensus       166 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  214 (265)
                      +++..| .++..+..++.++...|+.++|..+++.+....|+++.+...+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          173 YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            999999 9999999999999999999999999999999999988766544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.96  E-value=1.1e-27  Score=177.74  Aligned_cols=202  Identities=14%  Similarity=0.087  Sum_probs=168.7

Q ss_pred             HhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC
Q 024618           35 LKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI  111 (265)
Q Consensus        35 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  111 (265)
                      ...|.++..++.+|..++..|++++|+..|+++++..|++   +.+++.+|.++...|++++|+..|+++++..|++   
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~---   85 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID---   85 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC---
Confidence            4567788888899999999999999999999999888887   7888889999988888888888888888877753   


Q ss_pred             chhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHhhCCCCHHHH------
Q 024618          112 APPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL--------SRQYDKAIESFQTALKLKPQDYSLW------  177 (265)
Q Consensus       112 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~------  177 (265)
                                               |..+.+++.+|.++..        .|++++|+..|+++++.+|+++.+.      
T Consensus        86 -------------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~  140 (261)
T 3qky_A           86 -------------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKI  140 (261)
T ss_dssp             -------------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             -------------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHH
Confidence                                     3445677777888877        7888888888888888888776555      


Q ss_pred             -----------HHHHHHHHhhcCcHHHHHHHHHHHhcCCc---chhhHHHHHHHHHhc----------CCcHHHHHHHHH
Q 024618          178 -----------NKLGATQANSVQSADAILAYQRALDLKPN---YVRAWANMGISYANQ----------GMYEESVRYYVR  233 (265)
Q Consensus       178 -----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~  233 (265)
                                 +.+|.++...|++++|+..|+++++..|+   .+.+++.+|.++..+          |++++|+..|++
T Consensus       141 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~  220 (261)
T 3qky_A          141 RELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER  220 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence                       88899999999999999999999999988   457899999999977          889999999999


Q ss_pred             HHhcCCCCc---hhHHHHHHHHHHhCCccccccc
Q 024618          234 ALAMNPKAD---NAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       234 a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      +++..|+++   .+...++.++..+++++++..+
T Consensus       221 ~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~~  254 (261)
T 3qky_A          221 LLQIFPDSPLLRTAEELYTRARQRLTELEGDASL  254 (261)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            999999985   5667788888888888776543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.96  E-value=4.4e-28  Score=181.06  Aligned_cols=219  Identities=12%  Similarity=0.012  Sum_probs=195.5

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      .++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+++++++.+|.++.++..+|.++...
T Consensus        45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  124 (275)
T 1xnf_A           45 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG  124 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA  166 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  166 (265)
                      |++++|+..++++++..|++....  .......|++++|+..+.+++...|.+...+. ++.++...++.++|+..++++
T Consensus       125 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~  203 (275)
T 1xnf_A          125 GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKAD  203 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHH
Confidence            999999999999999999987444  45557789999999999999999988766554 777888899999999999999


Q ss_pred             HhhCCCC----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHH
Q 024618          167 LKLKPQD----YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYY  231 (265)
Q Consensus       167 ~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  231 (265)
                      +...|..    +.++..+|.++...|++++|+..|++++..+|++...   .+.++...|++++|++.+
T Consensus       204 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          204 ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred             hcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence            8876643    6889999999999999999999999999999977443   477889999999999887

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.96  E-value=6e-28  Score=177.10  Aligned_cols=195  Identities=20%  Similarity=0.225  Sum_probs=163.9

Q ss_pred             ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhh
Q 024618           40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDS  119 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (265)
                      .+..++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++                
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----------------   85 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE----------------   85 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------
Confidence            3557888999999999999999999999999999999999999999998888777766655554                


Q ss_pred             hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHH
Q 024618          120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQR  199 (265)
Q Consensus       120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  199 (265)
                                     ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++
T Consensus        86 ---------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  150 (243)
T 2q7f_A           86 ---------------LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR  150 (243)
T ss_dssp             ---------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             ---------------cCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                           45667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          200 ALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       200 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      ++...|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|
T Consensus       151 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  216 (243)
T 2q7f_A          151 AVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML  216 (243)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred             HHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.96  E-value=6.7e-29  Score=195.35  Aligned_cols=253  Identities=16%  Similarity=0.064  Sum_probs=217.8

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhC------CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HH
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKN------PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LE   76 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~   76 (265)
                      .++.+|.++...|++++|+..+++++...      |....++..+|.++...|++++|+.+++++++..|..      ..
T Consensus        49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  128 (406)
T 3sf4_A           49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR  128 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence            35678999999999999999999998763      3446688999999999999999999999999986654      45


Q ss_pred             HHhhhhhhhhhhhh--------------------HHHHHHHHHHHHhcCCCCCC------Cc---hhhhhhhhchHHHHH
Q 024618           77 VLLSLGVSHTNELE--------------------QAAALKYLYGWLRHHPKYGT------IA---PPELSDSLYYADVAR  127 (265)
Q Consensus        77 ~~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~a~~  127 (265)
                      ++..+|.++...|+                    +++|+..+++++...+....      .+   +.++...|++++|+.
T Consensus       129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  208 (406)
T 3sf4_A          129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI  208 (406)
T ss_dssp             HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            89999999999999                    99999999999886443322      11   889999999999999


Q ss_pred             HHHHHHhcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHH
Q 024618          128 LFVEAARMSPEDA------DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQSADAIL  195 (265)
Q Consensus       128 ~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~  195 (265)
                      .++++++..|...      .++..+|.++...|++++|+..+++++...|..      ..++..+|.++...|++++|+.
T Consensus       209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  288 (406)
T 3sf4_A          209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID  288 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            9999998765433      389999999999999999999999999887655      6789999999999999999999


Q ss_pred             HHHHHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC------CchhHHHHHHHHHHhCCcccc
Q 024618          196 AYQRALDLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMNPK------ADNAWQYLRISLRYAGRYPNR  261 (265)
Q Consensus       196 ~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A  261 (265)
                      .+++++...+..      ..++..+|.++...|++++|+.++++++++.+.      ...++..++.++..+|+...+
T Consensus       289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  366 (406)
T 3sf4_A          289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST  366 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence            999999875543      568889999999999999999999999987443      356888999999999987554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.96  E-value=7.9e-27  Score=174.32  Aligned_cols=217  Identities=19%  Similarity=0.178  Sum_probs=197.1

Q ss_pred             CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh----hhhHHHHHHHHHHHHhcCCCCCCCc
Q 024618           37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN----ELEQAAALKYLYGWLRHHPKYGTIA  112 (265)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~  112 (265)
                      +|.++.+++.+|.++...|++++|+.+|+++++  |+++.++..+|.++..    .+++++|+.+|+++++..  ++..+
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            578899999999999999999999999999998  7888999999999999    999999999999999885  33333


Q ss_pred             ---hhhhhh----hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024618          113 ---PPELSD----SLYYADVARLFVEAARMSPEDADVHIVLGVLYNL----SRQYDKAIESFQTALKLKPQDYSLWNKLG  181 (265)
Q Consensus       113 ---~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  181 (265)
                         +.++..    .+++++|+..++++++.  +++.++..+|.++..    .+++++|+..|+++++..  ++.++..+|
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg  153 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG  153 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence               888888    99999999999999987  479999999999999    999999999999999975  688999999


Q ss_pred             HHHHh----hcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh----cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024618          182 ATQAN----SVQSADAILAYQRALDLKPNYVRAWANMGISYAN----QGMYEESVRYYVRALAMNPKADNAWQYLRISLR  253 (265)
Q Consensus       182 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  253 (265)
                      .++..    .+++++|+.+|+++++..  ++.++..+|.++..    .+++++|+.+|+++++..|  +.++..+|.++.
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~  229 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY  229 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence            99999    999999999999999874  57899999999999    9999999999999999865  789999999999


Q ss_pred             H----hCCcccccccC
Q 024618          254 Y----AGRYPNRGDIF  265 (265)
Q Consensus       254 ~----~~~~~~A~~~~  265 (265)
                      .    .+++++|++.|
T Consensus       230 ~g~~~~~~~~~A~~~~  245 (273)
T 1ouv_A          230 NGEGVTRNEKQAIENF  245 (273)
T ss_dssp             TTSSSSCCSTTHHHHH
T ss_pred             cCCCcccCHHHHHHHH
Confidence            9    99999998753

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.96  E-value=7.8e-28  Score=192.86  Aligned_cols=193  Identities=15%  Similarity=0.096  Sum_probs=184.0

Q ss_pred             CCcchhhhHHHHHcCCh-HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618            7 HPNPLKEGQELFRKGLL-SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH   85 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   85 (265)
                      ...++.+|.++...|++ ++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|+++++.+|+ ..++..+|.++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~  180 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVL  180 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHH
Confidence            34567899999999999 99999999999999999999999999999999999999999999999999 69999999999


Q ss_pred             hhh---------hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhh--------hchHHHHHHHHHHHhcCC---CCHHH
Q 024618           86 TNE---------LEQAAALKYLYGWLRHHPKYGTIA---PPELSDS--------LYYADVARLFVEAARMSP---EDADV  142 (265)
Q Consensus        86 ~~~---------~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~a~~~~~~~~~~~~---~~~~~  142 (265)
                      ...         |++++|+..++++++.+|++...+   +.++...        |++++|+..|+++++.+|   .++.+
T Consensus       181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  260 (474)
T 4abn_A          181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL  260 (474)
T ss_dssp             TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHH
T ss_pred             HHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHH
Confidence            999         999999999999999999988777   8888888        999999999999999999   99999


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618          143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA  200 (265)
Q Consensus       143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  200 (265)
                      +..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+.+.
T Consensus       261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999999999999876543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.96  E-value=5.9e-28  Score=200.77  Aligned_cols=173  Identities=18%  Similarity=0.222  Sum_probs=156.0

Q ss_pred             hCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhh
Q 024618           36 KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE  115 (265)
Q Consensus        36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  115 (265)
                      ..|++++++..+|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..|++++             
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al-------------   70 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI-------------   70 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------
Confidence            4688899999999999999999999999999999999999999999999998888877776655544             


Q ss_pred             hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHH
Q 024618          116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL  195 (265)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  195 (265)
                                        +++|++..++..+|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|+.
T Consensus        71 ------------------~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~  132 (723)
T 4gyw_A           71 ------------------RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA  132 (723)
T ss_dssp             ------------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ------------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence                              45667789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618          196 AYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  239 (265)
                      .|+++++++|+++.++.++|.++..+|++++|++.+++++++.|
T Consensus       133 ~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          133 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA  176 (723)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence            99999999999999999999999999999999999999988654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.96  E-value=1.4e-27  Score=176.18  Aligned_cols=198  Identities=17%  Similarity=0.180  Sum_probs=182.0

Q ss_pred             hCCCC-hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchh
Q 024618           36 KNPEN-SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPP  114 (265)
Q Consensus        36 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  114 (265)
                      .+|.+ +.++..+|.++...|++++|+.+++++++.+|.++.++..+|.++...|++++|+..++++++           
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-----------   99 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA-----------   99 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------
Confidence            34554 678999999999999999999999999999999999999999999998888777766655554           


Q ss_pred             hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhhcCcHH
Q 024618          115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK--LKPQDYSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~  192 (265)
                                          ..|.+..++..+|.++...|++++|+..+++++.  ..|.++.++..+|.++...|++++
T Consensus       100 --------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  159 (252)
T 2ho1_A          100 --------------------SDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ  159 (252)
T ss_dssp             --------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred             --------------------HCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence                                4566788999999999999999999999999999  888889999999999999999999


Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      |+..+++++...|.++.++..+|.++...|++++|+..++++++..|++..++..++.++...|++++|.+.
T Consensus       160 A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~  231 (252)
T 2ho1_A          160 AKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASY  231 (252)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.96  E-value=5e-27  Score=170.80  Aligned_cols=182  Identities=15%  Similarity=0.108  Sum_probs=158.9

Q ss_pred             CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618            7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT   86 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   86 (265)
                      ...++.+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+|+++..+..++.++.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  121 (228)
T 4i17_A           42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYL  121 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            34567799999999999999999999999999999999999999999999999999999999999999999888888887


Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHH
Q 024618           87 NELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQ  164 (265)
Q Consensus        87 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~  164 (265)
                      ..|.                        ++...|++++|+..++++++.+|+  ++.++..+|.++...|+     ..++
T Consensus       122 ~~g~------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~  172 (228)
T 4i17_A          122 KEGQ------------------------KFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLR  172 (228)
T ss_dssp             HHHH------------------------HHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHH
T ss_pred             HHhH------------------------HHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHH
Confidence            7665                        356789999999999999999999  99999999999977653     4567


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618          165 TALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA  219 (265)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  219 (265)
                      ++..+.+..+..+  .+......+.+++|+.+++++++++|+++.+...++.+..
T Consensus       173 ~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          173 KATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            7777777665443  4455667788999999999999999999998888887654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.95  E-value=8.3e-27  Score=193.91  Aligned_cols=164  Identities=19%  Similarity=0.301  Sum_probs=152.6

Q ss_pred             cCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024618           70 AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVL  149 (265)
Q Consensus        70 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  149 (265)
                      ..|++++++.++|.++..+|++++|+..|+++                               ++++|++..++.++|.+
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kA-------------------------------l~l~P~~~~a~~nLg~~   52 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKA-------------------------------LEVFPEFAAAHSNLASV   52 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------HHHCSCCHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------------HHhCCCCHHHHHHHHHH
Confidence            46889999999999999999887777665555                               45567779999999999


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHH
Q 024618          150 YNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVR  229 (265)
Q Consensus       150 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  229 (265)
                      +...|++++|+..|+++++++|+++.++.++|.++..+|++++|++.|+++++++|+++.++.++|.++..+|++++|+.
T Consensus        53 l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~  132 (723)
T 4gyw_A           53 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA  132 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          230 YYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       230 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      .|+++++++|+++.++.++|.++..+|++++|.+.
T Consensus       133 ~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~  167 (723)
T 4gyw_A          133 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER  167 (723)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred             HHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence            99999999999999999999999999999999764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.95  E-value=1.5e-25  Score=167.70  Aligned_cols=239  Identities=13%  Similarity=0.046  Sum_probs=216.7

Q ss_pred             hhHHHHHcCCh-HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcC--cHHHHHHHHHHHHhcCCChHHHHhhhhhhh----
Q 024618           13 EGQELFRKGLL-SEAVLALEAEVLKNPENSEGWRLLGIAHAEND--DDQQAIAAMMRAHEAEPTNLEVLLSLGVSH----   85 (265)
Q Consensus        13 ~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~----   85 (265)
                      ........|.+ ++|+..+.+++..+|++..+|...+.++...|  ++++++.++..++..+|.+..+|...+.++    
T Consensus        38 ~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~  117 (306)
T 3dra_A           38 LLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIM  117 (306)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence            34444566766 68999999999999999999999999999999  999999999999999999999999999999    


Q ss_pred             hhh---hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--
Q 024618           86 TNE---LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYA--DVARLFVEAARMSPEDADVHIVLGVLYNLSRQ--  155 (265)
Q Consensus        86 ~~~---~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  155 (265)
                      ...   +++++++..++++++.+|++..++   +.++...+.++  +++..+.++++.+|.+..+|...+.+....++  
T Consensus       118 ~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~  197 (306)
T 3dra_A          118 ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA  197 (306)
T ss_dssp             HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC
T ss_pred             HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence            666   789999999999999999999888   77788888888  99999999999999999999999999999887  


Q ss_pred             ----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH-HHHHHHHHHhcC---CcchhhHHHHHHHHHhcCCcHHH
Q 024618          156 ----YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD-AILAYQRALDLK---PNYVRAWANMGISYANQGMYEES  227 (265)
Q Consensus       156 ----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A  227 (265)
                          ++++++++.+++..+|++..+|+.++.++...|+..+ ...++++++..+   |.++.++..++.++.+.|+.++|
T Consensus       198 ~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A  277 (306)
T 3dra_A          198 TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES  277 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence                9999999999999999999999999999999998665 455777777766   77889999999999999999999


Q ss_pred             HHHHHHHHh-cCCCCchhHHHHHHH
Q 024618          228 VRYYVRALA-MNPKADNAWQYLRIS  251 (265)
Q Consensus       228 ~~~~~~a~~-~~~~~~~~~~~l~~~  251 (265)
                      +++|+.+.+ .+|.....|...+..
T Consensus       278 ~~~~~~l~~~~Dpir~~yW~~~~~~  302 (306)
T 3dra_A          278 RTVYDLLKSKYNPIRSNFWDYQISK  302 (306)
T ss_dssp             HHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred             HHHHHHHHhccChHHHHHHHHHHhh
Confidence            999999997 799998888877654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.95  E-value=3.7e-26  Score=169.58  Aligned_cols=208  Identities=12%  Similarity=0.094  Sum_probs=175.2

Q ss_pred             CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC---hHHHHhh
Q 024618            7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT---NLEVLLS   80 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~   80 (265)
                      ...++.+|..++..|++++|+..|++++...|.+   +.+++.+|.++...|++++|+..|+++++..|+   .+.+++.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~   94 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence            3456899999999999999999999999999998   889999999999999999999999999999874   4678999


Q ss_pred             hhhhhhh--------hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024618           81 LGVSHTN--------ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL  152 (265)
Q Consensus        81 la~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  152 (265)
                      +|.++..        .|++++|+..|+++++..|++....           .+.   .......+.....++.+|.++..
T Consensus        95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-----------~a~---~~~~~~~~~~~~~~~~la~~~~~  160 (261)
T 3qky_A           95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD-----------DAT---QKIRELRAKLARKQYEAARLYER  160 (261)
T ss_dssp             HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH-----------HHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH-----------HHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999        9999999999999999999875432           111   11111112224557899999999


Q ss_pred             ccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhh----------cCcHHHHHHHHHHHhcCCcch---hhHHHHHH
Q 024618          153 SRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANS----------VQSADAILAYQRALDLKPNYV---RAWANMGI  216 (265)
Q Consensus       153 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~  216 (265)
                      .|++++|+..|+++++..|++   +.++..+|.++...          |++++|+..|+++++..|+++   .+...++.
T Consensus       161 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  240 (261)
T 3qky_A          161 RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTR  240 (261)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            999999999999999999984   57899999999977          899999999999999999985   45566777


Q ss_pred             HHHhcCCcHHHH
Q 024618          217 SYANQGMYEESV  228 (265)
Q Consensus       217 ~~~~~g~~~~A~  228 (265)
                      ++...++++++.
T Consensus       241 ~~~~~~~~~~~~  252 (261)
T 3qky_A          241 ARQRLTELEGDA  252 (261)
T ss_dssp             HHHHHHHHHTCT
T ss_pred             HHHHHHHhhhhh
Confidence            777777665543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.95  E-value=3.1e-26  Score=173.98  Aligned_cols=207  Identities=9%  Similarity=0.002  Sum_probs=188.4

Q ss_pred             HHHHHHHHHHHhcCCChHHHHhhhhhhhhh-------hhhH-------HHHHHHHHHHHh-cCCCCCCCc---hhhhhhh
Q 024618           58 QQAIAAMMRAHEAEPTNLEVLLSLGVSHTN-------ELEQ-------AAALKYLYGWLR-HHPKYGTIA---PPELSDS  119 (265)
Q Consensus        58 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~~~~-~~~~~~~~~---~~~~~~~  119 (265)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|+++++ ..|++...+   +.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            789999999999999999999999998864       3664       999999999999 799888766   8888999


Q ss_pred             hchHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hcCcHHHHHHH
Q 024618          120 LYYADVARLFVEAARMSPEDAD-VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN-SVQSADAILAY  197 (265)
Q Consensus       120 ~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  197 (265)
                      |++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.+..++...+.+... .|++++|+..|
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~  192 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999887 999999999999999999999999999999998888877766443 79999999999


Q ss_pred             HHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc---CCC-CchhHHHHHHHHHHhCCccccccc
Q 024618          198 QRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM---NPK-ADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~-~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      +++++..|+++.+|..+|.++...|++++|+..|++++..   .|+ ....|..++..+...|+.++|..+
T Consensus       193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~  263 (308)
T 2ond_A          193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV  263 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999999999999999999996   553 677899999999999999887654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.94  E-value=4.7e-27  Score=185.39  Aligned_cols=233  Identities=16%  Similarity=0.096  Sum_probs=204.3

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHh------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc------CCChHH
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLK------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA------EPTNLE   76 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~   76 (265)
                      .++.+|.++...|++++|+..+++++..      .|....++..+|.++...|++++|+.+++++++.      .|....
T Consensus        88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  167 (411)
T 4a1s_A           88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR  167 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence            3567899999999999999999999987      4566779999999999999999999999999998      556678


Q ss_pred             HHhhhhhhhhhhhh-----------------HHHHHHHHHHHHhcCCCCCC------Cc---hhhhhhhhchHHHHHHHH
Q 024618           77 VLLSLGVSHTNELE-----------------QAAALKYLYGWLRHHPKYGT------IA---PPELSDSLYYADVARLFV  130 (265)
Q Consensus        77 ~~~~la~~~~~~~~-----------------~~~A~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~a~~~~~  130 (265)
                      ++..+|.++...|+                 +++|+.+++++++..+....      .+   +.++...|++++|+..++
T Consensus       168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  247 (411)
T 4a1s_A          168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ  247 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            99999999999999                 99999999999886543222      11   888999999999999999


Q ss_pred             HHHhcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHHHH
Q 024618          131 EAARMSPEDA------DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQSADAILAYQ  198 (265)
Q Consensus       131 ~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~  198 (265)
                      ++++..|...      .++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+.+++
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  327 (411)
T 4a1s_A          248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN  327 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9998866433      388999999999999999999999999987644      6789999999999999999999999


Q ss_pred             HHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC
Q 024618          199 RALDLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMNPKA  241 (265)
Q Consensus       199 ~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  241 (265)
                      +++...+..      ..++..+|.++...|++++|+.++++++++.+..
T Consensus       328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  376 (411)
T 4a1s_A          328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence            999885543      4588999999999999999999999999987653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.94  E-value=1.2e-26  Score=181.59  Aligned_cols=227  Identities=10%  Similarity=-0.007  Sum_probs=186.5

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHh---CCC---ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-------hHHHH
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLK---NPE---NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT-------NLEVL   78 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~   78 (265)
                      .+|..+...|++++|+..+++++..   .++   ...++..+|.++...|++++|+.++.+++++.+.       ...++
T Consensus       108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  187 (383)
T 3ulq_A          108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH  187 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            4899999999999999999999986   232   3568899999999999999999999999987433       35689


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC------c---hhhhhhhhchHHHHHHHHHHHh-----cC-CCCHHHH
Q 024618           79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI------A---PPELSDSLYYADVARLFVEAAR-----MS-PEDADVH  143 (265)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~~  143 (265)
                      ..+|.++...|++++|+.+++++++..+.....      +   |.++...|++++|+..++++++     .+ |..+.++
T Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  267 (383)
T 3ulq_A          188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY  267 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            999999999999999999999999886655421      1   8888889999999999999988     45 7778888


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHhhcC---cHHHHHHHHHHHhcCCcchhhHHHHH
Q 024618          144 IVLGVLYNLSRQYDKAIESFQTALKLK-----PQDYSLWNKLGATQANSVQ---SADAILAYQRALDLKPNYVRAWANMG  215 (265)
Q Consensus       144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~  215 (265)
                      ..+|.++...|++++|+..+++++...     |.....+..+|.++...|+   +++|+..+++. ...|....++..+|
T Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la  346 (383)
T 3ulq_A          268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA  346 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence            999999999999999999999988873     3333345678888888888   77788887776 33445566788899


Q ss_pred             HHHHhcCCcHHHHHHHHHHHhcCC
Q 024618          216 ISYANQGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       216 ~~~~~~g~~~~A~~~~~~a~~~~~  239 (265)
                      .+|...|++++|+.++++++++..
T Consensus       347 ~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          347 KYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999887644

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.94  E-value=5.3e-27  Score=178.12  Aligned_cols=231  Identities=14%  Similarity=0.102  Sum_probs=174.6

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHh--------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--------CCC
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLK--------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--------EPT   73 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~   73 (265)
                      ++.+|..+...|++++|+..++++++.        .|....++..+|.++...|++++|+.++++++..        .|.
T Consensus        30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  109 (311)
T 3nf1_A           30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA  109 (311)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence            567899999999999999999999984        5666788999999999999999999999999987        356


Q ss_pred             hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcC-----CCCCC---Cc---hhhhhhhhchHHHHHHHHHHHhc-------
Q 024618           74 NLEVLLSLGVSHTNELEQAAALKYLYGWLRHH-----PKYGT---IA---PPELSDSLYYADVARLFVEAARM-------  135 (265)
Q Consensus        74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~---~~---~~~~~~~~~~~~a~~~~~~~~~~-------  135 (265)
                      ...++..+|.++...|++++|+.+++++++..     ++.+.   .+   +.++...|++++|+.++++++..       
T Consensus       110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  189 (311)
T 3nf1_A          110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP  189 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence            67899999999999999999999999998874     22221   11   77788888888888888888876       


Q ss_pred             -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC---------CCHHH------HHHHHHHHHhhcCcHHHHHHHHH
Q 024618          136 -SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKP---------QDYSL------WNKLGATQANSVQSADAILAYQR  199 (265)
Q Consensus       136 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~------~~~l~~~~~~~~~~~~A~~~~~~  199 (265)
                       .|....++..+|.++...|++++|+..++++++..|         .....      +...+..+...+.+.+|...+++
T Consensus       190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  269 (311)
T 3nf1_A          190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA  269 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence             555667788888888888888888888888886532         22222      33333444455666677777888


Q ss_pred             HHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          200 ALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       200 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      +....|..+.++..+|.++...|++++|+.++++++++.|+
T Consensus       270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            87788888889999999999999999999999999888764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.94  E-value=1.1e-26  Score=177.90  Aligned_cols=232  Identities=16%  Similarity=0.085  Sum_probs=197.1

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHh------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHH
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLK------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEV   77 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~   77 (265)
                      +..+|.++...|++++|+..+++++..      .|....++..+|.++...|++++|+..++++++..|..      ..+
T Consensus        46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  125 (338)
T 3ro2_A           46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA  125 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence            457899999999999999999999876      34446688999999999999999999999999875543      448


Q ss_pred             Hhhhhhhhhhhhh--------------------HHHHHHHHHHHHhcCCCCCC------Cc---hhhhhhhhchHHHHHH
Q 024618           78 LLSLGVSHTNELE--------------------QAAALKYLYGWLRHHPKYGT------IA---PPELSDSLYYADVARL  128 (265)
Q Consensus        78 ~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~a~~~  128 (265)
                      +..+|.++...|+                    +++|+..+++++...+....      .+   +.++...|++++|+..
T Consensus       126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  205 (338)
T 3ro2_A          126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA  205 (338)
T ss_dssp             HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            9999999999999                    99999999998876432221      11   8889999999999999


Q ss_pred             HHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHH
Q 024618          129 FVEAARMSPED------ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQSADAILA  196 (265)
Q Consensus       129 ~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~  196 (265)
                      ++++++..+..      ..++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+..
T Consensus       206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  285 (338)
T 3ro2_A          206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY  285 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            99999875432      2488999999999999999999999999886655      67889999999999999999999


Q ss_pred             HHHHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC
Q 024618          197 YQRALDLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMNPKA  241 (265)
Q Consensus       197 ~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  241 (265)
                      +++++...+..      ..++..+|.++...|++++|+.++++++++.+..
T Consensus       286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence            99999876543      4588899999999999999999999999987753

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.94  E-value=3.3e-26  Score=155.31  Aligned_cols=145  Identities=14%  Similarity=0.160  Sum_probs=129.3

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (265)
                      |.++...|++++|+..+++++..+|.++..++.+|.+|...|++++|+..|+++++++|+++.+|..+|.++...|++++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence            34455556666666777777777788888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHH-HHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618          193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRY-YVRALAMNPKADNAWQYLRISLRYAGR  257 (265)
Q Consensus       193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~a~~~~~~~~~~~~~l~~~~~~~~~  257 (265)
                      |+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus        84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999887765 599999999999999999999988886

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.94  E-value=2.7e-26  Score=179.58  Aligned_cols=222  Identities=12%  Similarity=0.077  Sum_probs=189.8

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHhc---CCC---hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC-----
Q 024618           43 GWRLLGIAHAENDDDQQAIAAMMRAHEA---EPT---NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI-----  111 (265)
Q Consensus        43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----  111 (265)
                      .++.+|.++...|++++|+.++++++++   .++   .+.++..+|.++...|++++|+.+++++++..+.....     
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            3445999999999999999999999987   233   46899999999999999999999999999987776541     


Q ss_pred             --c---hhhhhhhhchHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hC-CCCH
Q 024618          112 --A---PPELSDSLYYADVARLFVEAARMSPED------ADVHIVLGVLYNLSRQYDKAIESFQTALK-----LK-PQDY  174 (265)
Q Consensus       112 --~---~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~  174 (265)
                        +   |.++...|++++|+..+++++...|..      ..++..+|.++...|++++|+.+++++++     .+ |..+
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  264 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP  264 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence              1   889999999999999999999875432      25899999999999999999999999999     45 7778


Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHhcC-----CcchhhHHHHHHHHHhcCC---cHHHHHHHHHHHhcCCCCchhHH
Q 024618          175 SLWNKLGATQANSVQSADAILAYQRALDLK-----PNYVRAWANMGISYANQGM---YEESVRYYVRALAMNPKADNAWQ  246 (265)
Q Consensus       175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~  246 (265)
                      .++..+|.++...|++++|+.++++++...     |.....+..+|.++...|+   +++|+..+++. ...|....++.
T Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~  343 (383)
T 3ulq_A          265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI  343 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence            899999999999999999999999999874     3333446779999999999   88888888876 33444567888


Q ss_pred             HHHHHHHHhCCcccccccC
Q 024618          247 YLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       247 ~l~~~~~~~~~~~~A~~~~  265 (265)
                      .+|.++...|++++|..+|
T Consensus       344 ~la~~y~~~g~~~~A~~~~  362 (383)
T 3ulq_A          344 DVAKYYHERKNFQKASAYF  362 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHH
Confidence            9999999999999998653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.93  E-value=2.5e-25  Score=185.57  Aligned_cols=184  Identities=12%  Similarity=0.037  Sum_probs=154.2

Q ss_pred             hCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHH--------hcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCC
Q 024618           36 KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAH--------EAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPK  107 (265)
Q Consensus        36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  107 (265)
                      .+|+++.+++..+   ...|++++|++.+++++        +.+|++..++..+|.++...|++++|+..++++++.+|+
T Consensus       389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~  465 (681)
T 2pzi_A          389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW  465 (681)
T ss_dssp             CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence            4567777776666   67788888888888888        777888888888888888888888888888888888887


Q ss_pred             CCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024618          108 YGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQ  184 (265)
Q Consensus       108 ~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  184 (265)
                      +...+   |.++...|++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|+++.+++++|.++
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~  544 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR  544 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence            76655   7777778888888888888888889899999999999999999999 9999999999999999999999999


Q ss_pred             HhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCC
Q 024618          185 ANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM  223 (265)
Q Consensus       185 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  223 (265)
                      ...|++++|+..|+++++.+|++..++.++|.++...++
T Consensus       545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            999999999999999999999999999999999877665

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.93  E-value=9.7e-25  Score=156.35  Aligned_cols=179  Identities=14%  Similarity=0.101  Sum_probs=136.0

Q ss_pred             ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhh----------------hhhhhhhhhhHHHHHHHHHHHHh
Q 024618           40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS----------------LGVSHTNELEQAAALKYLYGWLR  103 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~~~~  103 (265)
                      +++.++..|..+...|++++|+..|+++++.+|+++.+++.                +|.++...|+             
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------------   69 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN-------------   69 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC-------------
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC-------------
Confidence            34556666666777777777777777777777766666665                5555555555             


Q ss_pred             cCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024618          104 HHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT  183 (265)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  183 (265)
                                        +++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+
T Consensus        70 ------------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~  131 (208)
T 3urz_A           70 ------------------YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY  131 (208)
T ss_dssp             ------------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence                              45555666666677888899999999999999999999999999999999999999999999


Q ss_pred             HHhhcC--cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 024618          184 QANSVQ--SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS  251 (265)
Q Consensus       184 ~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  251 (265)
                      +...|+  ...+...+++++...|. ..+++.+|.++...|++++|+.+|+++++++|+. .+...+..+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i  199 (208)
T 3urz_A          132 YYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI  199 (208)
T ss_dssp             HHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence            987764  45677788877654333 3577889999999999999999999999999974 444445544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.93  E-value=2.8e-24  Score=174.99  Aligned_cols=253  Identities=8%  Similarity=-0.014  Sum_probs=173.8

Q ss_pred             CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhh---
Q 024618            7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGV---   83 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~---   83 (265)
                      ...|+..+.. ...|++++|...|+++++..|.++.+|..++..+...|++++|...|++++...|+ ...|..++.   
T Consensus        13 ~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~-~~lw~~~~~~~~   90 (530)
T 2ooe_A           13 LDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVR   90 (530)
T ss_dssp             HHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHH
Confidence            3456777774 77899999999999999999999999999999999999999999999999999984 444433321   


Q ss_pred             ---------------------------------------hhh---------hhhhHHHHHHHHHHHHhcCCCCCC--Cc-
Q 024618           84 ---------------------------------------SHT---------NELEQAAALKYLYGWLRHHPKYGT--IA-  112 (265)
Q Consensus        84 ---------------------------------------~~~---------~~~~~~~A~~~~~~~~~~~~~~~~--~~-  112 (265)
                                                             ...         ..|+++.|...|+++++ .|....  .+ 
T Consensus        91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~  169 (530)
T 2ooe_A           91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWR  169 (530)
T ss_dssp             HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHH
T ss_pred             HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHH
Confidence                                                   111         15778888888888887 454321  00 


Q ss_pred             --hh----------------------------------------------------------h-----hhhh------hc
Q 024618          113 --PP----------------------------------------------------------E-----LSDS------LY  121 (265)
Q Consensus       113 --~~----------------------------------------------------------~-----~~~~------~~  121 (265)
                        ..                                                          .     ....      ++
T Consensus       170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~  249 (530)
T 2ooe_A          170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED  249 (530)
T ss_dssp             HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred             HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence              00                                                          0     0000      01


Q ss_pred             ----hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHh-hCCCCHHHHHHHHH
Q 024618          122 ----YADVARLFVEAARMSPEDADVHIVLGVLYNL-------SRQYD-------KAIESFQTALK-LKPQDYSLWNKLGA  182 (265)
Q Consensus       122 ----~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~-~~~~~~~~~~~l~~  182 (265)
                          ...++..|++++..+|.++.+|..+|..+..       .|+++       +|+..|+++++ ..|+++.+|..+|.
T Consensus       250 ~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~  329 (530)
T 2ooe_A          250 QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD  329 (530)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence                1245567788888888888888888888775       67776       78888888886 67888888888888


Q ss_pred             HHHhhcCcHHHHHHHHHHHhcCCcch-hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHH-HHHhCCccc
Q 024618          183 TQANSVQSADAILAYQRALDLKPNYV-RAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS-LRYAGRYPN  260 (265)
Q Consensus       183 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~~~~~~~~  260 (265)
                      ++...|++++|...|+++++..|.++ .+|..+|.++.+.|++++|+..|+++++..|.....+...+.+ +...|+.++
T Consensus       330 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~  409 (530)
T 2ooe_A          330 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV  409 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhH
Confidence            88888888888888888888877764 4676666666555555555555555555444433333333322 123444444


Q ss_pred             cc
Q 024618          261 RG  262 (265)
Q Consensus       261 A~  262 (265)
                      |.
T Consensus       410 A~  411 (530)
T 2ooe_A          410 AF  411 (530)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.93  E-value=2.4e-25  Score=167.80  Aligned_cols=217  Identities=13%  Similarity=0.088  Sum_probs=164.3

Q ss_pred             ChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC------hHHHHhhhhhhhhhhhhHHHHH
Q 024618           22 LLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT------NLEVLLSLGVSHTNELEQAAAL   95 (265)
Q Consensus        22 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~   95 (265)
                      ++++|+..|.++              |.++...|++++|+.+|.+++++.+.      .+.++..+|.++...|++++|+
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~   97 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            366777777666              55677788888888888888876421      2567888888888888888888


Q ss_pred             HHHHHHHhcCCCCCCC------c---hhhhhhh-hchHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHH
Q 024618           96 KYLYGWLRHHPKYGTI------A---PPELSDS-LYYADVARLFVEAARMSPED------ADVHIVLGVLYNLSRQYDKA  159 (265)
Q Consensus        96 ~~~~~~~~~~~~~~~~------~---~~~~~~~-~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A  159 (265)
                      .++++++.+.|.....      +   +.++... |++++|+..|++++++.|..      ..++..+|.++...|++++|
T Consensus        98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  177 (292)
T 1qqe_A           98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            8888888877654331      1   6677775 88888888888888876643      46788999999999999999


Q ss_pred             HHHHHHHHhhCCCCHH-------HHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh-----HHHHHHHHH--hcCCcH
Q 024618          160 IESFQTALKLKPQDYS-------LWNKLGATQANSVQSADAILAYQRALDLKPNYVRA-----WANMGISYA--NQGMYE  225 (265)
Q Consensus       160 ~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~l~~~~~--~~g~~~  225 (265)
                      +..|+++++..|++..       ++..+|.++..+|++++|+..|++++.++|+....     +..++..+.  ..++++
T Consensus       178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~  257 (292)
T 1qqe_A          178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS  257 (292)
T ss_dssp             HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999887653       57889999999999999999999999999886543     444566554  467799


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHH
Q 024618          226 ESVRYYVRALAMNPKADNAWQYLRISL  252 (265)
Q Consensus       226 ~A~~~~~~a~~~~~~~~~~~~~l~~~~  252 (265)
                      +|+..|++++.++|.....+..+-..+
T Consensus       258 ~A~~~~~~~~~l~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          258 EHCKEFDNFMRLDKWKITILNKIKESI  284 (292)
T ss_dssp             HHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCccHHHHHHHHHHHHHHh
Confidence            999999999999888777666665555

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.93  E-value=1.4e-23  Score=169.35  Aligned_cols=233  Identities=12%  Similarity=0.023  Sum_probs=138.0

Q ss_pred             cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhh----cCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh----hhhH
Q 024618           20 KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAE----NDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN----ELEQ   91 (265)
Q Consensus        20 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~   91 (265)
                      .+++++|+..|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.++..+|.++..    .+++
T Consensus       164 ~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~  239 (490)
T 2xm6_A          164 TRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDY  239 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence            44444444444444433  234444444444444    44444444444444442  234444455555443    4455


Q ss_pred             HHHHHHHHHHHhcCCCCCCCc-hhhhhh----hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----cCHHHHHH
Q 024618           92 AAALKYLYGWLRHHPKYGTIA-PPELSD----SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS-----RQYDKAIE  161 (265)
Q Consensus        92 ~~A~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~  161 (265)
                      ++|+.+|+++++..+...... +.++..    .+++++|+.+|+++.+.  .++.+++.+|.++...     +++++|+.
T Consensus       240 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~  317 (490)
T 2xm6_A          240 TQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAIS  317 (490)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence            555555555544322111111 444444    56666677777666543  4566667777777666     67777777


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhhc---CcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh----cCCcHHHHHHHHHH
Q 024618          162 SFQTALKLKPQDYSLWNKLGATQANSV---QSADAILAYQRALDLKPNYVRAWANMGISYAN----QGMYEESVRYYVRA  234 (265)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a  234 (265)
                      .|+++.+.  .++.++..+|.++...|   ++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++
T Consensus       318 ~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A  393 (490)
T 2xm6_A          318 WYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA  393 (490)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            77777664  45667777777776644   667777777777765  456777777877777    77778888888877


Q ss_pred             HhcCCCCchhHHHHHHHHHH----hCCccccccc
Q 024618          235 LAMNPKADNAWQYLRISLRY----AGRYPNRGDI  264 (265)
Q Consensus       235 ~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~  264 (265)
                      ++.  .++.++..+|.+|..    .+++++|+..
T Consensus       394 ~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  425 (490)
T 2xm6_A          394 AEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAW  425 (490)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            765  357777778887777    6777776654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.93  E-value=1.8e-26  Score=175.18  Aligned_cols=229  Identities=16%  Similarity=0.121  Sum_probs=173.4

Q ss_pred             CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--------CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcC---
Q 024618           37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--------EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHH---  105 (265)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---  105 (265)
                      +|....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+..+++++...   
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            4556778999999999999999999999999995        66778899999999999999999999999999873   


Q ss_pred             --CCCC---CCc---hhhhhhhhchHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618          106 --PKYG---TIA---PPELSDSLYYADVARLFVEAARMS--------PEDADVHIVLGVLYNLSRQYDKAIESFQTALKL  169 (265)
Q Consensus       106 --~~~~---~~~---~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  169 (265)
                        ++.+   ..+   +.++...|++++|+..++++++..        |....++..+|.++...|++++|+..+++++..
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence              2222   222   778888888888888888888763        455677888888888888888888888888887


Q ss_pred             --------CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc---------c------hhhHHHHHHHHHhcCCcHH
Q 024618          170 --------KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN---------Y------VRAWANMGISYANQGMYEE  226 (265)
Q Consensus       170 --------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~------~~~~~~l~~~~~~~g~~~~  226 (265)
                              .|..+.++..+|.++...|++++|+..+++++...|.         .      ...+...+..+...+.+.+
T Consensus       183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (311)
T 3nf1_A          183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE  262 (311)
T ss_dssp             HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence                    5556677888888888888888888888888865332         2      2233444555556667777


Q ss_pred             HHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          227 SVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       227 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      |...++++....|....++..+|.++...|++++|+++|
T Consensus       263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  301 (311)
T 3nf1_A          263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE  301 (311)
T ss_dssp             CC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            778888888888888999999999999999999998753

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.93  E-value=7.9e-25  Score=170.94  Aligned_cols=227  Identities=15%  Similarity=0.078  Sum_probs=178.2

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCC------CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-------hHH
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNP------ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT-------NLE   76 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~   76 (265)
                      ++.+|..+...|++++|+..+++++...+      ....++..+|.++...|++++|+.+++++++..+.       ...
T Consensus       104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  183 (378)
T 3q15_A          104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ  183 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence            35678899999999999999999987642      23458889999999999999999999999987432       256


Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC---------chhhhhhhhchHHHHHHHHHHHh-----cCCCCHHH
Q 024618           77 VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI---------APPELSDSLYYADVARLFVEAAR-----MSPEDADV  142 (265)
Q Consensus        77 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~  142 (265)
                      ++..+|.++...|++++|+.+++++++..+.....         +|.++...|++++|+..+++++.     .+|..+.+
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  263 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV  263 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence            78899999999999999999999999865432221         17778888888888888888888     67777788


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHhhcC---cHHHHHHHHHHHhcCCcchhhHHHH
Q 024618          143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQ-----DYSLWNKLGATQANSVQ---SADAILAYQRALDLKPNYVRAWANM  214 (265)
Q Consensus       143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l  214 (265)
                      +..+|.++...|++++|+..++++++..+.     ....+..++.++...++   +.+|+..+++. ...|....++..+
T Consensus       264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l  342 (378)
T 3q15_A          264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA  342 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence            888888888888888888888888887432     33455667777777777   77777777762 2334445677788


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHhc
Q 024618          215 GISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       215 ~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      |.+|...|++++|+.+|+++++.
T Consensus       343 a~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          343 AAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH
Confidence            88888888888888888888765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.93  E-value=1.9e-25  Score=186.27  Aligned_cols=186  Identities=16%  Similarity=0.048  Sum_probs=171.6

Q ss_pred             hcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHH--------hcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCC
Q 024618           69 EAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWL--------RHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSP  137 (265)
Q Consensus        69 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~  137 (265)
                      ..+|+++.+++..+   ...|++++|+..+++++        +.+|++...+   +.++...|++++|+..++++++.+|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            34677777777766   77899999999999999        8889888776   8999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 024618          138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS  217 (265)
Q Consensus       138 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  217 (265)
                      ++..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++.+|+++.+++++|.+
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~  543 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA  543 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             HHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCc
Q 024618          218 YANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY  258 (265)
Q Consensus       218 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  258 (265)
                      +..+|++++|+..|+++++++|++..++..+|.++...++.
T Consensus       544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~  584 (681)
T 2pzi_A          544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRST  584 (681)
T ss_dssp             HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred             HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCC
Confidence            99999999999999999999999999999999999776653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.93  E-value=3.4e-24  Score=150.43  Aligned_cols=173  Identities=24%  Similarity=0.343  Sum_probs=147.5

Q ss_pred             hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhh
Q 024618           41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL  120 (265)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (265)
                      ...+..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++                 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----------------   70 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA-----------------   70 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------
Confidence            456777888888888888888888888888888888888888888888887777766555444                 


Q ss_pred             chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618          121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA  200 (265)
Q Consensus       121 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  200 (265)
                                    ..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++
T Consensus        71 --------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  136 (186)
T 3as5_A           71 --------------DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIA  136 (186)
T ss_dssp             --------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence                          455667888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618          201 LDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA  244 (265)
Q Consensus       201 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  244 (265)
                      +...|.++.++..+|.++...|++++|+.+++++++..|++...
T Consensus       137 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          137 LGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE  180 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred             HhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence            99999988999999999999999999999999999988876544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.93  E-value=2e-23  Score=168.35  Aligned_cols=241  Identities=12%  Similarity=0.075  Sum_probs=163.2

Q ss_pred             cchhhhHHHHH----cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhh----cCcHHHHHHHHHHHHhcCCChHHHHhh
Q 024618            9 NPLKEGQELFR----KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAE----NDDDQQAIAAMMRAHEAEPTNLEVLLS   80 (265)
Q Consensus         9 ~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~   80 (265)
                      ..+.+|..+..    .+++++|+..|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.+++.
T Consensus        41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~  116 (490)
T 2xm6_A           41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQN  116 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence            34566777777    77888888888887765  567788888888877    77888888888887764  46677777


Q ss_pred             hhhhhhh----hhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhh----hhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024618           81 LGVSHTN----ELEQAAALKYLYGWLRHHPKYGTIA---PPELSD----SLYYADVARLFVEAARMSPEDADVHIVLGVL  149 (265)
Q Consensus        81 la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  149 (265)
                      +|.+|..    .+++++|+.+|+++....  ++...   +.++..    .+++++|+.+|+++.+.  .++.++..+|.+
T Consensus       117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~  192 (490)
T 2xm6_A          117 LGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYM  192 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence            8877776    677888888888777653  22222   555555    56777777777777764  457777777777


Q ss_pred             HHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh-
Q 024618          150 YNL----SRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN----SVQSADAILAYQRALDLKPNYVRAWANMGISYAN-  220 (265)
Q Consensus       150 ~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-  220 (265)
                      |..    .+++++|+..|+++.+.  .++.++..+|.++..    .+++++|+.+|+++++.  .++.+++.+|.++.. 
T Consensus       193 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g  268 (490)
T 2xm6_A          193 YSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQG  268 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHT
T ss_pred             HhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCC
Confidence            776    67777777777777654  456666667766665    56666777777666654  334566666666666 


Q ss_pred             ---cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-----CCcccccc
Q 024618          221 ---QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYA-----GRYPNRGD  263 (265)
Q Consensus       221 ---~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~  263 (265)
                         .+++++|+.+|+++.+.  .++.++..+|.++...     +++++|+.
T Consensus       269 ~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~  317 (490)
T 2xm6_A          269 LAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAIS  317 (490)
T ss_dssp             TTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence               66666666666666544  3455666666666655     55555544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.93  E-value=6.5e-24  Score=153.96  Aligned_cols=206  Identities=17%  Similarity=0.039  Sum_probs=154.6

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCCh---HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHH---HHhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENS---EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE---VLLSL   81 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l   81 (265)
                      ..++.+|..++..|++++|+..|++++...|.++   .+++.+|.++...|++++|+..|+++++.+|+++.   +++.+
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~   84 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR   84 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence            4568899999999999999999999999998764   68999999999999999999999999999998764   78999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE  161 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  161 (265)
                      |.++...+..     .+....        ..+......|++++|+..|+++++..|+++.+...+..+....+       
T Consensus        85 g~~~~~~~~~-----~~~~~~--------~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-------  144 (225)
T 2yhc_A           85 GLTNMALDDS-----ALQGFF--------GVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-------  144 (225)
T ss_dssp             HHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-------
T ss_pred             HHHHHhhhhh-----hhhhhh--------ccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-------
Confidence            9998876532     111111        11344556778888888888888888887655433222111111       


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch---hhHHHHHHHHHhcCCcHHHHHHHHHHHhcC
Q 024618          162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV---RAWANMGISYANQGMYEESVRYYVRALAMN  238 (265)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  238 (265)
                                ........+|.++...|++++|+..|+++++..|+++   .++..+|.++.++|++++|++.++++....
T Consensus       145 ----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          145 ----------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             ----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             ----------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                      0112345678888888999999999999888888765   678888999999999999999998888888


Q ss_pred             CCCch
Q 024618          239 PKADN  243 (265)
Q Consensus       239 ~~~~~  243 (265)
                      |++.+
T Consensus       215 ~~~~~  219 (225)
T 2yhc_A          215 SNTLE  219 (225)
T ss_dssp             SCCCC
T ss_pred             CCchh
Confidence            87643

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.92  E-value=4.3e-25  Score=149.82  Aligned_cols=146  Identities=20%  Similarity=0.225  Sum_probs=117.2

Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHH
Q 024618           47 LGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVA  126 (265)
Q Consensus        47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  126 (265)
                      ||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+.+|+                           
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~---------------------------   55 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYIC---------------------------   55 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHH---------------------------
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHH---------------------------
Confidence            67777777888888888888888878777788888888877777766665554                           


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHH-HHHHHhcCC
Q 024618          127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA-YQRALDLKP  205 (265)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~  205 (265)
                          ++++++|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|
T Consensus        56 ----~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P  131 (150)
T 4ga2_A           56 ----TYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP  131 (150)
T ss_dssp             ----HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred             ----HHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence                444556677888999999999999999999999999999999999999999999999998877665 588999999


Q ss_pred             cchhhHHHHHHHHHhcCC
Q 024618          206 NYVRAWANMGISYANQGM  223 (265)
Q Consensus       206 ~~~~~~~~l~~~~~~~g~  223 (265)
                      +++.++..++.++...|+
T Consensus       132 ~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          132 GSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TCHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHhCc
Confidence            999998888888888775

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.92  E-value=1.1e-23  Score=157.68  Aligned_cols=211  Identities=8%  Similarity=-0.011  Sum_probs=193.9

Q ss_pred             CcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh--hHHHHHHHHHHHHhcCCCCCCCc---hhhh----hhh---hch
Q 024618           55 DDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL--EQAAALKYLYGWLRHHPKYGTIA---PPEL----SDS---LYY  122 (265)
Q Consensus        55 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~---~~~~----~~~---~~~  122 (265)
                      ...++|+..+.+++.++|++..+|...+.++...+  ++++++..++.++..+|++..++   +.++    ...   +++
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence            34468999999999999999999999999999999  99999999999999999999988   5555    444   789


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC------cHHHH
Q 024618          123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYD--KAIESFQTALKLKPQDYSLWNKLGATQANSVQ------SADAI  194 (265)
Q Consensus       123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~A~  194 (265)
                      ++++..+.++++.+|.+..+|...+.+....|.++  ++++.+.++++.+|.+..+|...+.+....+.      +++++
T Consensus       127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl  206 (306)
T 3dra_A          127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL  206 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence            99999999999999999999999999999999999  99999999999999999999999999999887      99999


Q ss_pred             HHHHHHHhcCCcchhhHHHHHHHHHhcCCcHH-HHHHHHHHHhcC---CCCchhHHHHHHHHHHhCCcccccccC
Q 024618          195 LAYQRALDLKPNYVRAWANMGISYANQGMYEE-SVRYYVRALAMN---PKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      +++++++..+|++..+|..++.++...|+..+ ..+++.++++.+   |.++.++..++.++.+.|+.++|+++|
T Consensus       207 ~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~  281 (306)
T 3dra_A          207 NYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY  281 (306)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            99999999999999999999999999998655 456777777776   788899999999999999999998754

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.92  E-value=2.9e-23  Score=150.53  Aligned_cols=192  Identities=11%  Similarity=0.029  Sum_probs=139.8

Q ss_pred             ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc----
Q 024618           40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA----  112 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----  112 (265)
                      ++..++.+|..++..|++++|+..|+++++..|.+   +.+++.+|.++...|++++|+..|+++++.+|+++...    
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            46788999999999999999999999999998876   47899999999999999999999999999988865321    


Q ss_pred             --hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCc
Q 024618          113 --PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS  190 (265)
Q Consensus       113 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  190 (265)
                        +.++...+                +.....+..++..+...|++++|+..|+++++..|+++.++..+..+....+  
T Consensus        83 ~~g~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~--  144 (225)
T 2yhc_A           83 MRGLTNMALD----------------DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD--  144 (225)
T ss_dssp             HHHHHHHHHH----------------C--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH--
T ss_pred             HHHHHHHhhh----------------hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH--
Confidence              22221111                1112223344455555778888888888888888887655433222111111  


Q ss_pred             HHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhCCccccccc
Q 024618          191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD---NAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       191 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                                     ........+|.++...|++++|+..|+++++..|+++   .++..+|.++.++|++++|++.
T Consensus       145 ---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~  206 (225)
T 2yhc_A          145 ---------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKV  206 (225)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence                           1122346789999999999999999999999999986   6799999999999999999764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.92  E-value=5.5e-24  Score=149.36  Aligned_cols=171  Identities=21%  Similarity=0.259  Sum_probs=156.8

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      .++.+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++...
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~   89 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV   89 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK  168 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  168 (265)
                      |++++|+..+++++.                               ..|.++.++..+|.++...|++++|+..++++++
T Consensus        90 ~~~~~A~~~~~~~~~-------------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  138 (186)
T 3as5_A           90 QKYDLAVPLLIKVAE-------------------------------ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG  138 (186)
T ss_dssp             TCHHHHHHHHHHHHH-------------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHh-------------------------------cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence            988877766665554                               4566788899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh
Q 024618          169 LKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRA  210 (265)
Q Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  210 (265)
                      ..|.++.++..+|.++...|++++|+..++++++..|++...
T Consensus       139 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          139 LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE  180 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred             cCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence            999999999999999999999999999999999998876543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.92  E-value=2.3e-23  Score=169.62  Aligned_cols=218  Identities=12%  Similarity=0.044  Sum_probs=197.2

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHhh-------cCcHH-------HHHHHHHHHHh-cCCChHHHHhhhhhhhhhh
Q 024618           24 SEAVLALEAEVLKNPENSEGWRLLGIAHAE-------NDDDQ-------QAIAAMMRAHE-AEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus        24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~   88 (265)
                      .+++..|++++..+|.++.+|+.+|..+..       .|+++       +|+..++++++ ..|+++.+|..++.++...
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            478899999999999999999999999886       79977       99999999997 8999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCC-CCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHccCHHHHHHHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYG-TIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVL-YNLSRQYDKAIESF  163 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~  163 (265)
                      |++++|...|+++++..|.++ ..+   +..+...|++++|...|+++++..|.....+...+.+ +...|++++|...|
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~  414 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  414 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence            999999999999999999875 234   7777789999999999999999999887777766655 34689999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh----hHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618          164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR----AWANMGISYANQGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  239 (265)
                      +++++..|+++.+|..++.++...|+.++|...|++++...|.++.    +|...+......|+.+.+..+++++++..|
T Consensus       415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            9999999999999999999999999999999999999998766554    788888888899999999999999999988


Q ss_pred             CC
Q 024618          240 KA  241 (265)
Q Consensus       240 ~~  241 (265)
                      ++
T Consensus       495 ~~  496 (530)
T 2ooe_A          495 EE  496 (530)
T ss_dssp             HH
T ss_pred             hh
Confidence            53

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.92  E-value=8.7e-24  Score=151.39  Aligned_cols=176  Identities=15%  Similarity=0.147  Sum_probs=145.9

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH----------------HHHHHhhcCcHHHHHHHHHHHHhcC
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRL----------------LGIAHAENDDDQQAIAAMMRAHEAE   71 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~~   71 (265)
                      ..++.+|..++..|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++.+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            346789999999999999999999999999999999999                9999999999999999999999999


Q ss_pred             CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024618           72 PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYN  151 (265)
Q Consensus        72 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  151 (265)
                      |+++.++..+|.++...|++++|+..|++++                               +++|+++.++..+|.++.
T Consensus        85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------------------------------~~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           85 PNNVDCLEACAEMQVCRGQEKDALRMYEKIL-------------------------------QLEADNLAANIFLGNYYY  133 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------------------------------HHCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------------HcCCCCHHHHHHHHHHHH
Confidence            9999999999999999999877776655554                               456777999999999987


Q ss_pred             HccC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618          152 LSRQ--YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI  216 (265)
Q Consensus       152 ~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  216 (265)
                      ..|+  ...+...+.+++...| ...+++.+|.++...|++++|+..|+++++++|+. .+...+..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~  198 (208)
T 3urz_A          134 LTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDK  198 (208)
T ss_dssp             HHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHH
Confidence            7654  4566777777764322 23467888999999999999999999999999974 33333443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.92  E-value=5e-24  Score=140.02  Aligned_cols=122  Identities=19%  Similarity=0.298  Sum_probs=115.7

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh
Q 024618          131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRA  210 (265)
Q Consensus       131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  210 (265)
                      ++..++|+....+..+|..++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            34457898899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 024618          211 WANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISL  252 (265)
Q Consensus       211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  252 (265)
                      ++.+|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999998774

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.92  E-value=2.5e-22  Score=151.13  Aligned_cols=238  Identities=12%  Similarity=0.032  Sum_probs=205.9

Q ss_pred             HHHHHcCChH-HHHHHHHHHHHhCCCChHHHHHHHHHHhhcCc----------HHHHHHHHHHHHhcCCChHHHHhhhhh
Q 024618           15 QELFRKGLLS-EAVLALEAEVLKNPENSEGWRLLGIAHAENDD----------DQQAIAAMMRAHEAEPTNLEVLLSLGV   83 (265)
Q Consensus        15 ~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la~   83 (265)
                      ......|.++ +|+..+.+++..+|++..+|...+.+....+.          +++++.++..++..+|.+..+|...+.
T Consensus        37 ~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w  116 (331)
T 3dss_A           37 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW  116 (331)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3345677776 79999999999999999999999999888776          789999999999999999999999999


Q ss_pred             hhhhhhh--HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhc-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----
Q 024618           84 SHTNELE--QAAALKYLYGWLRHHPKYGTIA---PPELSDSLY-YADVARLFVEAARMSPEDADVHIVLGVLYNLS----  153 (265)
Q Consensus        84 ~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  153 (265)
                      +....+.  +++++.++.++++.+|.+..++   +.+....|. +++++.++.+++..+|.+..+|..++.++...    
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~  196 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  196 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence            9999884  8999999999999999999888   677777787 58999999999999999999999999998877    


Q ss_pred             ----------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-----------cCcHHHHHHHHHHHhcCCcchhhHH
Q 024618          154 ----------RQYDKAIESFQTALKLKPQDYSLWNKLGATQANS-----------VQSADAILAYQRALDLKPNYVRAWA  212 (265)
Q Consensus       154 ----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~  212 (265)
                                +.++++++++.+++..+|++..+|+.+..++...           +.++++++.++++++..|++...+.
T Consensus       197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~  276 (331)
T 3dss_A          197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL  276 (331)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence                      5689999999999999999999998776666655           5678999999999999999866555


Q ss_pred             HHHHHHH---hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 024618          213 NMGISYA---NQGMYEESVRYYVRALAMNPKADNAWQYLRISL  252 (265)
Q Consensus       213 ~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  252 (265)
                      .++.+..   ..|..++...++.+.++++|....-|..++..+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          277 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             HHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            5444332   357788999999999999998877776665544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.92  E-value=2.3e-24  Score=161.22  Aligned_cols=220  Identities=14%  Similarity=0.071  Sum_probs=150.6

Q ss_pred             HHcCChHHHHHHHHHHHHh--------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--------CCChHHHHhhh
Q 024618           18 FRKGLLSEAVLALEAEVLK--------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--------EPTNLEVLLSL   81 (265)
Q Consensus        18 ~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l   81 (265)
                      ...|++++|+..++++++.        .|..+.++..+|.++...|++++|+.+++++++.        .|....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3467777777777777763        2556778999999999999999999999999987        36667899999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcC-----CCCC---CCc---hhhhhhhhchHHHHHHHHHHHhc--------CCCCHHH
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHH-----PKYG---TIA---PPELSDSLYYADVARLFVEAARM--------SPEDADV  142 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~---~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~  142 (265)
                      |.++...|++++|+.++++++...     ++++   ..+   +.++...|++++|+..+++++..        .|....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999988762     2221   111   66666666677777766666666        4445566


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHhhcCc------HHHHHHHHHHHhcCCcc
Q 024618          143 HIVLGVLYNLSRQYDKAIESFQTALKL---------KPQDYSLWNKLGATQANSVQS------ADAILAYQRALDLKPNY  207 (265)
Q Consensus       143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~  207 (265)
                      +..+|.++...|++++|+..++++++.         .+.....+..++......+..      .++...++......|..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            666667777777777777777666654         333445555555555543332      22333333333334555


Q ss_pred             hhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          208 VRAWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       208 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      +.++..+|.++..+|++++|+.+++++++.
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            667777888888888888888888887764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.91  E-value=5e-24  Score=166.41  Aligned_cols=222  Identities=13%  Similarity=0.087  Sum_probs=188.2

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHhcCC------ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC-----
Q 024618           43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEP------TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI-----  111 (265)
Q Consensus        43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----  111 (265)
                      .++.+|..+...|++++|+.++++++++.+      ..+.++..+|.++...|+++.|+.+++++++..+.....     
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            566789999999999999999999998732      246789999999999999999999999999987764431     


Q ss_pred             -----chhhhhhhhchHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hCCCCHH
Q 024618          112 -----APPELSDSLYYADVARLFVEAARMSP------EDADVHIVLGVLYNLSRQYDKAIESFQTALK-----LKPQDYS  175 (265)
Q Consensus       112 -----~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~  175 (265)
                           .|.++...|++++|+..+++++...+      ....++..+|.++...|++++|+.++++++.     .+|..+.
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence                 18899999999999999999998633      1246789999999999999999999999999     6787789


Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHhcCC-----cchhhHHHHHHHHHhcCC---cHHHHHHHHHHHhcCCCCchhHHH
Q 024618          176 LWNKLGATQANSVQSADAILAYQRALDLKP-----NYVRAWANMGISYANQGM---YEESVRYYVRALAMNPKADNAWQY  247 (265)
Q Consensus       176 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~  247 (265)
                      ++..+|.++...|++++|+.+++++++..+     .....+..++.++...|+   +.+|+.++++. ...|.....+..
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~  341 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS  341 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence            999999999999999999999999999843     334456778888888888   88888888872 233444567888


Q ss_pred             HHHHHHHhCCcccccccC
Q 024618          248 LRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       248 l~~~~~~~~~~~~A~~~~  265 (265)
                      +|.++...|++++|...|
T Consensus       342 la~~y~~~g~~~~A~~~~  359 (378)
T 3q15_A          342 AAAVFESSCHFEQAAAFY  359 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHH
Confidence            999999999999998754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.91  E-value=9.7e-24  Score=159.01  Aligned_cols=220  Identities=14%  Similarity=0.055  Sum_probs=171.6

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHhhc--C-cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 024618           25 EAVLALEAEVLKNPENSEGWRLLGIAHAEN--D-DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGW  101 (265)
Q Consensus        25 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  101 (265)
                      +|..+++++-+.-+.....+     .++..  + ++++|+..|.++              |.++...|++++|+..|.++
T Consensus         3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a   63 (292)
T 1qqe_A            3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA   63 (292)
T ss_dssp             CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence            56777888877766543332     11232  2 599999999998              55788899999999999999


Q ss_pred             HhcCCCCCC------Cc---hhhhhhhhchHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHH
Q 024618          102 LRHHPKYGT------IA---PPELSDSLYYADVARLFVEAARMSPED------ADVHIVLGVLYNLS-RQYDKAIESFQT  165 (265)
Q Consensus       102 ~~~~~~~~~------~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~  165 (265)
                      +.+.+....      .+   |.++...|++++|+.++++++.+.|..      ..++..+|.++... |++++|+..|++
T Consensus        64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~  143 (292)
T 1qqe_A           64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL  143 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            998654322      11   888999999999999999999987643      46889999999996 999999999999


Q ss_pred             HHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh-------hHHHHHHHHHhcCCcHHHHHHHH
Q 024618          166 ALKLKPQD------YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR-------AWANMGISYANQGMYEESVRYYV  232 (265)
Q Consensus       166 ~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~  232 (265)
                      ++++.|..      ..++..+|.++..+|++++|+..|++++...|.+..       ++..+|.++..+|++++|+.+|+
T Consensus       144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  223 (292)
T 1qqe_A          144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ  223 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99987754      467899999999999999999999999999887653       57889999999999999999999


Q ss_pred             HHHhcCCCCchh-----HHHHHHHHH--HhCCcccccc
Q 024618          233 RALAMNPKADNA-----WQYLRISLR--YAGRYPNRGD  263 (265)
Q Consensus       233 ~a~~~~~~~~~~-----~~~l~~~~~--~~~~~~~A~~  263 (265)
                      ++++++|+....     +..++..+.  ..+++++|+.
T Consensus       224 ~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~  261 (292)
T 1qqe_A          224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCK  261 (292)
T ss_dssp             GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred             HHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999987653     344555553  3445655554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.91  E-value=8.5e-23  Score=159.13  Aligned_cols=254  Identities=11%  Similarity=-0.031  Sum_probs=207.5

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChH-----HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHHHh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSE-----GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEVLL   79 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~   79 (265)
                      +.+|..+...|++++|+..+++++...|....     ++..+|.++...|++++|...+++++...|..      ..++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            45788899999999999999999998876532     57789999999999999999999999875543      24578


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC--------C---chhhhhhhhchHHHHHHHHHHHhcCCC-----CHHHH
Q 024618           80 SLGVSHTNELEQAAALKYLYGWLRHHPKYGT--------I---APPELSDSLYYADVARLFVEAARMSPE-----DADVH  143 (265)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~  143 (265)
                      .+|.++...|++++|+..+++++...+....        .   .+.++...|++++|...+++++...+.     ...++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            8999999999999999999999987543221        1   177889999999999999999998764     24678


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHH-----HHHHHHHhhcCcHHHHHHHHHHHhcCCcc----hhhHH
Q 024618          144 IVLGVLYNLSRQYDKAIESFQTALKLKPQ--DYSLWN-----KLGATQANSVQSADAILAYQRALDLKPNY----VRAWA  212 (265)
Q Consensus       144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~  212 (265)
                      ..+|.++...|++++|...+++++...+.  .+..+.     .++.++...|++++|...+++++...|..    ...+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            89999999999999999999999876332  222222     34456889999999999999998876643    23567


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHhCCccccccc
Q 024618          213 NMGISYANQGMYEESVRYYVRALAMNPKA------DNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      .+|.++...|++++|...+++++...+..      ..++..++.++...|++++|...
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  315 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV  315 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            89999999999999999999998865432      24777899999999999988764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.91  E-value=2.8e-23  Score=165.57  Aligned_cols=125  Identities=13%  Similarity=0.056  Sum_probs=58.7

Q ss_pred             chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-H--HhhcCcHHH
Q 024618          121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLS----RQYDKAIESFQTALKLKPQDYSLWNKLGAT-Q--ANSVQSADA  193 (265)
Q Consensus       121 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A  193 (265)
                      ++++|+.+|+++....|.....++.+|.+|...    +++++|+..|+++.   |.++.+++.+|.+ +  ...+++++|
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A  270 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQM  270 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence            444555555555555444444444445444333    34455555555444   4444455555544 2  234444555


Q ss_pred             HHHHHHHHhcCCcchhhHHHHHHHHHhcC-----CcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618          194 ILAYQRALDLKPNYVRAWANMGISYANQG-----MYEESVRYYVRALAMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  254 (265)
                      +.+|+++.+.  .++.+++.+|.+|. .|     ++++|+.+|+++.   |.++.+.+.||.+|..
T Consensus       271 ~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          271 MKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence            5555544432  23444444554444 33     4445555554444   4444444445544443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.90  E-value=5.7e-23  Score=163.78  Aligned_cols=240  Identities=15%  Similarity=0.105  Sum_probs=171.7

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcH---HHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDD---QQAIAAMMRAHEAEPTNLEVLLSLGVSHTN   87 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   87 (265)
                      ..+|..++..|++++|+..|+++.+.  .++.+++.+|.++...|+.   ++|+.+|+++++.   ++.+++.+|.++..
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence            56789999999999999999999775  4678889999999999988   8999999999876   77889999995555


Q ss_pred             hh-----hHHHHHHHHHHHHhcCCCCCCCc-hhhhhhhh---------------------------------------ch
Q 024618           88 EL-----EQAAALKYLYGWLRHHPKYGTIA-PPELSDSL---------------------------------------YY  122 (265)
Q Consensus        88 ~~-----~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------------------------------~~  122 (265)
                      .+     ++++|+.+|+++++..+...... +.++...+                                       ..
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~  161 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL  161 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred             CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence            44     88999999999988554332111 33333222                                       22


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh----cCcHHHHH
Q 024618          123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSR---QYDKAIESFQTALKLKPQDYSLWNKLGATQANS----VQSADAIL  195 (265)
Q Consensus       123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~  195 (265)
                      +++..+++.+...+|   .+++.+|.++...|   ++++|+..|+++.+..|.....++.+|.+|...    +++++|+.
T Consensus       162 ~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~  238 (452)
T 3e4b_A          162 DDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA  238 (452)
T ss_dssp             HHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence            333344444444444   48999999999999   999999999999999999999889999999766    79999999


Q ss_pred             HHHHHHhcCCcchhhHHHHHHH-H--HhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhC-----Cccccccc
Q 024618          196 AYQRALDLKPNYVRAWANMGIS-Y--ANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG-----RYPNRGDI  264 (265)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~  264 (265)
                      +|+++.   |.++.+++.+|.+ +  ...+++++|+.+|+++.+.  +++.+++.||.+|. .|     ++++|+..
T Consensus       239 ~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~  309 (452)
T 3e4b_A          239 LLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAH  309 (452)
T ss_dssp             HHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred             HHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence            999998   8999999999999 4  5789999999999999965  58999999999998 66     77777654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.90  E-value=3.3e-23  Score=139.83  Aligned_cols=120  Identities=10%  Similarity=-0.029  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618          123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALD  202 (265)
Q Consensus       123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  202 (265)
                      -.+...+++++.++|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.
T Consensus        19 ~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           19 INSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             HHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            33345567788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618          203 LKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       203 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  242 (265)
                      ++|+++.+++++|.++..+|++++|+..|++++++.|+.+
T Consensus        99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999999999999999864

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.90  E-value=1.1e-22  Score=141.91  Aligned_cols=163  Identities=13%  Similarity=0.056  Sum_probs=95.6

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN   87 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   87 (265)
                      ...+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.+...
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH   85 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence            34567777777777777777777777777777777777777777777777777777777777777 55444333322110


Q ss_pred             hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618           88 ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL  167 (265)
Q Consensus        88 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  167 (265)
                      .                              .+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|++++
T Consensus        86 ~------------------------------~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  135 (176)
T 2r5s_A           86 Q------------------------------QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNIL  135 (176)
T ss_dssp             H------------------------------HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             h------------------------------hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            0                              0001123444455555555555555555555555555555555555555


Q ss_pred             hhCCCC--HHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618          168 KLKPQD--YSLWNKLGATQANSVQSADAILAYQRAL  201 (265)
Q Consensus       168 ~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~  201 (265)
                      +.+|+.  +.++..+|.++...|+.++|+..|++++
T Consensus       136 ~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          136 KVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             TTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            555543  3355555555555555555555555544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.89  E-value=3.8e-21  Score=145.28  Aligned_cols=232  Identities=12%  Similarity=0.032  Sum_probs=199.0

Q ss_pred             cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh-h-hHHHHHH
Q 024618           20 KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEND-DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE-L-EQAAALK   96 (265)
Q Consensus        20 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-~~~~A~~   96 (265)
                      .+..++|+..+.+++..+|++..+|...+.++...| .+++++.++.+++..+|.+..+|...+.++... + ++++++.
T Consensus        67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~  146 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE  146 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence            455579999999999999999999999999999999 599999999999999999999999999999988 7 8999999


Q ss_pred             HHHHHHhcCCCCCCCc---hhhhhhhhchH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-------HHH
Q 024618           97 YLYGWLRHHPKYGTIA---PPELSDSLYYA--------DVARLFVEAARMSPEDADVHIVLGVLYNLSRQ-------YDK  158 (265)
Q Consensus        97 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~  158 (265)
                      .+.++++.+|++..++   +.++...+.++        ++++.+.++++.+|.+..+|...+.++...++       +++
T Consensus       147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~e  226 (349)
T 3q7a_A          147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQD  226 (349)
T ss_dssp             HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHH
Confidence            9999999999998888   66777777777        99999999999999999999999999999887       799


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCc--------------------HHHHHHHHHHHhcC------CcchhhHH
Q 024618          159 AIESFQTALKLKPQDYSLWNKLGATQANSVQS--------------------ADAILAYQRALDLK------PNYVRAWA  212 (265)
Q Consensus       159 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~~~~~~------~~~~~~~~  212 (265)
                      +++++.+++..+|++..+|+.+..++...|..                    ..-.......+...      +..+.++.
T Consensus       227 ELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~  306 (349)
T 3q7a_A          227 ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE  306 (349)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence            99999999999999999999999888887765                    22223333222222      45677889


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHH-hcCCCCchhHHHHHHH
Q 024618          213 NMGISYANQGMYEESVRYYVRAL-AMNPKADNAWQYLRIS  251 (265)
Q Consensus       213 ~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~  251 (265)
                      .++.+|...|+.++|++.++... +.+|-....|...+..
T Consensus       307 ~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~  346 (349)
T 3q7a_A          307 YLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE  346 (349)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence            99999999999999999999987 6788777777766654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.89  E-value=2.9e-22  Score=139.69  Aligned_cols=168  Identities=12%  Similarity=0.052  Sum_probs=143.0

Q ss_pred             CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 024618           37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL  116 (265)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  116 (265)
                      +|...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|          
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p----------   71 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ----------   71 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC----------
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC----------
Confidence            4555667889999999999999999999999999999999999999999999999999888877766554          


Q ss_pred             hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHH
Q 024618          117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLY-NLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL  195 (265)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  195 (265)
                                            ++.....++.+. ...++..+|+..++++++.+|+++.+++.+|.++...|++++|+.
T Consensus        72 ----------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~  129 (176)
T 2r5s_A           72 ----------------------DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE  129 (176)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ----------------------ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence                                  343333334332 233445568999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcc--hhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618          196 AYQRALDLKPNY--VRAWANMGISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       196 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      .|+++++.+|+.  +.++..+|.++...|+.++|+..|++++.
T Consensus       130 ~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          130 LLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            999999999976  56999999999999999999999999875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.89  E-value=1.6e-21  Score=146.41  Aligned_cols=170  Identities=14%  Similarity=0.058  Sum_probs=146.6

Q ss_pred             hCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhh
Q 024618           36 KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE  115 (265)
Q Consensus        36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  115 (265)
                      ..|.+...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|         
T Consensus       112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---------  182 (287)
T 3qou_A          112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---------  182 (287)
T ss_dssp             HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---------
T ss_pred             HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---------
Confidence            34888899999999999999999999999999999999999999999999999999888887777666544         


Q ss_pred             hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHH
Q 024618          116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL  195 (265)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  195 (265)
                                            +........+..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+.
T Consensus       183 ----------------------~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~  240 (287)
T 3qou_A          183 ----------------------DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALE  240 (287)
T ss_dssp             ----------------------SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ----------------------chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence                                  3344555666667788888888889999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcc--hhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618          196 AYQRALDLKPNY--VRAWANMGISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       196 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      .|++++..+|++  ..++..++.++...|+.++|+..|++++.
T Consensus       241 ~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          241 LLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            999999988887  77888899999999998899988888775

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.89  E-value=1.9e-21  Score=159.52  Aligned_cols=165  Identities=19%  Similarity=0.166  Sum_probs=131.5

Q ss_pred             cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHH
Q 024618           20 KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLY   99 (265)
Q Consensus        20 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~   99 (265)
                      .|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999998888877776665


Q ss_pred             HHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024618          100 GWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNK  179 (265)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  179 (265)
                      ++++                               .+|++..++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus        82 ~al~-------------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  130 (568)
T 2vsy_A           82 QASD-------------------------------AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQ  130 (568)
T ss_dssp             HHHH-------------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHh-------------------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            5544                               466678899999999999999999999999999999999999999


Q ss_pred             HHHHHHhh---cCcHHHHHHHHHHHhcCCcchhhHHHHH
Q 024618          180 LGATQANS---VQSADAILAYQRALDLKPNYVRAWANMG  215 (265)
Q Consensus       180 l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~  215 (265)
                      +|.++...   |++++|+..++++++.+|.+...+..++
T Consensus       131 l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            99999999   9999999999999999999888877776

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.88  E-value=1.2e-21  Score=160.67  Aligned_cols=165  Identities=18%  Similarity=0.116  Sum_probs=133.4

Q ss_pred             cCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHH
Q 024618           54 NDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA  133 (265)
Q Consensus        54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  133 (265)
                      .|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++                               
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------------------------------   50 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL-------------------------------   50 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------------------------------
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------------
Confidence            4789999999999999999999999999999999888877776655554                               


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHH
Q 024618          134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWAN  213 (265)
Q Consensus       134 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  213 (265)
                      +.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus        51 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  130 (568)
T 2vsy_A           51 ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQ  130 (568)
T ss_dssp             TTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            45667799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc---CCcHHHHHHHHHHHhcCCCCchhHHHHH
Q 024618          214 MGISYANQ---GMYEESVRYYVRALAMNPKADNAWQYLR  249 (265)
Q Consensus       214 l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~l~  249 (265)
                      +|.++..+   |++++|++.++++++.+|++...+..++
T Consensus       131 l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            99999999   9999999999999999998766655443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.88  E-value=5.2e-23  Score=153.85  Aligned_cols=214  Identities=15%  Similarity=0.116  Sum_probs=151.0

Q ss_pred             hhcCcHHHHHHHHHHHHhc--------CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcC-----CCCCC---Cc---
Q 024618           52 AENDDDQQAIAAMMRAHEA--------EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHH-----PKYGT---IA---  112 (265)
Q Consensus        52 ~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~---~~---  112 (265)
                      ...|++++|+.+++++++.        .|..+.++..+|.++...|++++|+..+++++...     ++.+.   .+   
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4467777777777777763        35678899999999999999999999999998763     22221   11   


Q ss_pred             hhhhhhhhchHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHH
Q 024618          113 PPELSDSLYYADVARLFVEAARM--------SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL--------KPQDYSL  176 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~  176 (265)
                      +.++...|++++|+..+++++..        +|....++..+|.++...|++++|+..++++++.        .|....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            77777778888888888877776        3555677777888888888888888888888776        5555667


Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHhc---------CCcchhhHHHHHHHHHhcCCc------HHHHHHHHHHHhcCCCC
Q 024618          177 WNKLGATQANSVQSADAILAYQRALDL---------KPNYVRAWANMGISYANQGMY------EESVRYYVRALAMNPKA  241 (265)
Q Consensus       177 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~a~~~~~~~  241 (265)
                      +..+|.++...|++++|+..+++++..         .+.....+..++..+...+..      .++...++......|..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            777888888888888888888877765         333445666666666554443      33333333333334555


Q ss_pred             chhHHHHHHHHHHhCCcccccccC
Q 024618          242 DNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       242 ~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      ..++..+|.++...|++++|+..|
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~  275 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLE  275 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            678999999999999999998653

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.88  E-value=3.6e-22  Score=134.95  Aligned_cols=128  Identities=16%  Similarity=0.040  Sum_probs=118.7

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618          127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN  206 (265)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  206 (265)
                      ..+++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            45788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618          207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  254 (265)
                      ++.+++.+|.++..+|++++|+..|+++++++|+++........+...
T Consensus        88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  135 (148)
T 2vgx_A           88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSM  135 (148)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHH
Confidence            999999999999999999999999999999999988765554444433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.88  E-value=3.7e-22  Score=151.43  Aligned_cols=197  Identities=14%  Similarity=0.080  Sum_probs=126.4

Q ss_pred             HcCChHHHHHHHHHHHHhCCCC-----------hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHHHhhh
Q 024618           19 RKGLLSEAVLALEAEVLKNPEN-----------SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEVLLSL   81 (265)
Q Consensus        19 ~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l   81 (265)
                      ..|++++|..+++++.+..+..           ...+...|.++...|++++|+.+|.+++++.+..      ..++..+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l   82 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA   82 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4577888888888887654421           0133344566666666666666666666654321      3455566


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE  161 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  161 (265)
                      |.++...|++++|+.+|++++.+.+....           ..              ....++..+|.++.. |++++|+.
T Consensus        83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----------~~--------------~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           83 GMMLKDLQRMPEAVQYIEKASVMYVENGT-----------PD--------------TAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHHTTTC-----------HH--------------HHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHcCC-----------HH--------------HHHHHHHHHHHHHHc-CCHHHHHH
Confidence            66666666666666666655554322110           00              013466777777777 88888888


Q ss_pred             HHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHH
Q 024618          162 SFQTALKLKPQD------YSLWNKLGATQANSVQSADAILAYQRALDLKPNY------VRAWANMGISYANQGMYEESVR  229 (265)
Q Consensus       162 ~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~  229 (265)
                      +|++++.+.|..      ..++..+|.++..+|++++|+.+|++++.+.|.+      ..++..+|.++..+|++++|+.
T Consensus       137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            888887765543      4567777888888888888888888887765443      2366677777777788888888


Q ss_pred             HHHHHHhcCCCCc
Q 024618          230 YYVRALAMNPKAD  242 (265)
Q Consensus       230 ~~~~a~~~~~~~~  242 (265)
                      +|++++ ++|+..
T Consensus       217 ~~~~al-~~p~~~  228 (307)
T 2ifu_A          217 CVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHT-TSTTST
T ss_pred             HHHHHh-CCCCCC
Confidence            888888 777654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.88  E-value=1.8e-21  Score=127.78  Aligned_cols=122  Identities=15%  Similarity=0.125  Sum_probs=107.1

Q ss_pred             HHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q 024618           66 RAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIV  145 (265)
Q Consensus        66 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  145 (265)
                      ++..++|+.+..+..+|..++..|++++|+..|+++                               ++.+|.++.++..
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~a-------------------------------l~~~p~~~~~~~~   52 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEA-------------------------------VKRDPENAILYSN   52 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------HHHCTTCHHHHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------------HHhCCCCHHHHHH
Confidence            345678888899999999998888887777665554                               4556778999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 024618          146 LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISY  218 (265)
Q Consensus       146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  218 (265)
                      +|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..|+++++++|+++.++..++.++
T Consensus        53 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           53 RAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999888763

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.87  E-value=4.3e-23  Score=158.29  Aligned_cols=179  Identities=13%  Similarity=0.127  Sum_probs=145.8

Q ss_pred             hhhhhhhHHHHHHHHHH----HHhcCCCCCCCc-hhhh------------hhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q 024618           84 SHTNELEQAAALKYLYG----WLRHHPKYGTIA-PPEL------------SDSLYYADVARLFVEAARMSPEDADVHIVL  146 (265)
Q Consensus        84 ~~~~~~~~~~A~~~~~~----~~~~~~~~~~~~-~~~~------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  146 (265)
                      ++...+.+++|+..+..    ++.+.|+..... +...            ...+++++|+..+++++...|....++..+
T Consensus        74 ~~~~~~~~e~al~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~  153 (336)
T 1p5q_A           74 NLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKER  153 (336)
T ss_dssp             GGTCCHHHHHHHTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHhcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHH
Confidence            33334556666666666    555555542111 1111            245667777778888888888888999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH
Q 024618          147 GVLYNLSRQYDKAIESFQTALKLKPQD---------------YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW  211 (265)
Q Consensus       147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  211 (265)
                      |.++...|++++|+..|++++...|.+               ..++.++|.++...|++++|+..|+++++++|+++.++
T Consensus       154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  233 (336)
T 1p5q_A          154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGL  233 (336)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            999999999999999999999999988               58899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccc
Q 024618          212 ANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRG  262 (265)
Q Consensus       212 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  262 (265)
                      +.+|.++..+|++++|+..|+++++++|++..++..++.++..+|++++|.
T Consensus       234 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  284 (336)
T 1p5q_A          234 SRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  284 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998888773

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.87  E-value=6.9e-20  Score=137.87  Aligned_cols=200  Identities=12%  Similarity=0.023  Sum_probs=177.4

Q ss_pred             hhcCcHH-HHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh----------HHHHHHHHHHHHhcCCCCCCCc---hhhhh
Q 024618           52 AENDDDQ-QAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE----------QAAALKYLYGWLRHHPKYGTIA---PPELS  117 (265)
Q Consensus        52 ~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~---~~~~~  117 (265)
                      ...|.++ +|+..+.+++..+|++..+|...+.+....+.          +++++.+++.++..+|++..++   +.++.
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~  119 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  119 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            3456655 89999999999999999999999999988776          6899999999999999999988   67777


Q ss_pred             hhh--chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-------
Q 024618          118 DSL--YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ-YDKAIESFQTALKLKPQDYSLWNKLGATQANS-------  187 (265)
Q Consensus       118 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------  187 (265)
                      ..+  .+++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|..++.++...       
T Consensus       120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~  199 (331)
T 3dss_A          120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG  199 (331)
T ss_dssp             HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred             ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence            777  48999999999999999999999999999999998 69999999999999999999999999999887       


Q ss_pred             -------cCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc-----------CCcHHHHHHHHHHHhcCCCCchhHHHHH
Q 024618          188 -------VQSADAILAYQRALDLKPNYVRAWANMGISYANQ-----------GMYEESVRYYVRALAMNPKADNAWQYLR  249 (265)
Q Consensus       188 -------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~l~  249 (265)
                             +.++++++++.+++..+|++..+|+.+..++...           +.++++++.+++++++.|++...+..++
T Consensus       200 ~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~  279 (331)
T 3dss_A          200 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII  279 (331)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHH
Confidence                   5689999999999999999999998776666665           4689999999999999999855544444


Q ss_pred             HH
Q 024618          250 IS  251 (265)
Q Consensus       250 ~~  251 (265)
                      .+
T Consensus       280 ~~  281 (331)
T 3dss_A          280 LL  281 (331)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.87  E-value=2.1e-21  Score=145.25  Aligned_cols=194  Identities=15%  Similarity=0.121  Sum_probs=163.8

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN   87 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   87 (265)
                      ..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|+++.+++.+|.++..
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618           88 ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL  167 (265)
Q Consensus        88 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  167 (265)
                      .|++++|+..++++++.+|++...+...........++...........|.+..+...++.+.  .|++++|++.+++++
T Consensus        85 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al  162 (281)
T 2c2l_A           85 MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNH  162 (281)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGG
T ss_pred             cCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhh
Confidence            999999999999999999988766543333333444445555555566777777777777664  688999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhh-cCcHHHHHHHHHHHhc
Q 024618          168 KLKPQDYSLWNKLGATQANS-VQSADAILAYQRALDL  203 (265)
Q Consensus       168 ~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~  203 (265)
                      +.+|++......++.++... +.+++|.+.|.++.+.
T Consensus       163 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          163 EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            99998887777777777666 6788888888887764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.87  E-value=4.4e-20  Score=132.42  Aligned_cols=186  Identities=13%  Similarity=0.024  Sum_probs=157.8

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh----hHHHHHHHHH
Q 024618           24 SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL----EQAAALKYLY   99 (265)
Q Consensus        24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~   99 (265)
                      .+|+..|+++.+.  .++.+++.+|.++...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|+
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            3578889998875  68999999999999999999999999999875  578999999999987 6    6766666665


Q ss_pred             HHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCC--CC
Q 024618          100 GWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL----SRQYDKAIESFQTALKLKP--QD  173 (265)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~--~~  173 (265)
                      ++.+                                 +.++.+++.+|.+|..    .+++++|+.+|+++.+..|  .+
T Consensus        78 ~A~~---------------------------------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  124 (212)
T 3rjv_A           78 KAVE---------------------------------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA  124 (212)
T ss_dssp             HHHH---------------------------------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred             HHHH---------------------------------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence            5432                                 4678999999999988    8999999999999999877  34


Q ss_pred             HHHHHHHHHHHHh----hcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc-C-----CcHHHHHHHHHHHhcCCCCch
Q 024618          174 YSLWNKLGATQAN----SVQSADAILAYQRALDLKPNYVRAWANMGISYANQ-G-----MYEESVRYYVRALAMNPKADN  243 (265)
Q Consensus       174 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~a~~~~~~~~~  243 (265)
                      +.+++.+|.+|..    .+++++|+.+|+++++. |.++.+++.+|.+|... |     ++++|+.+|+++.+..  ++.
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~  201 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDT  201 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHH
Confidence            8999999999999    88999999999999988 66788999999999864 3     8999999999999874  455


Q ss_pred             hHHHHHH
Q 024618          244 AWQYLRI  250 (265)
Q Consensus       244 ~~~~l~~  250 (265)
                      +...++.
T Consensus       202 A~~~l~~  208 (212)
T 3rjv_A          202 GCEEFDR  208 (212)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.87  E-value=7.3e-21  Score=142.84  Aligned_cols=152  Identities=13%  Similarity=0.085  Sum_probs=135.4

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (265)
                      +..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++..+|+........+..+...++.++
T Consensus       124 a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~  203 (287)
T 3qou_A          124 AMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTP  203 (287)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCc
Confidence            33344444555555666777777888899999999999999999999999999999999777777778888999999999


Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhCCccccccc
Q 024618          193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA--DNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      |+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++  ..++..++.++..+|+.++|...
T Consensus       204 a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~  277 (287)
T 3qou_A          204 EIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX  277 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence            9999999999999999999999999999999999999999999999998  88999999999999999988754

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.86  E-value=4.8e-21  Score=144.75  Aligned_cols=222  Identities=12%  Similarity=0.072  Sum_probs=187.1

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh-hHHHHHHHHHHHHhcCCCCCCCc---hhhhhh
Q 024618           43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL-EQAAALKYLYGWLRHHPKYGTIA---PPELSD  118 (265)
Q Consensus        43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~  118 (265)
                      ++..+..+....+..++|+..+.+++.++|++..+|...+.++...| .+++++..++.++..+|++..++   +.++..
T Consensus        56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~  135 (349)
T 3q7a_A           56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR  135 (349)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            44444445555666789999999999999999999999999999999 59999999999999999999888   666666


Q ss_pred             h-h-chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 024618          119 S-L-YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYD--------KAIESFQTALKLKPQDYSLWNKLGATQANSV  188 (265)
Q Consensus       119 ~-~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  188 (265)
                      . + ++++++.++.++++.+|.+..+|...+.+....|.++        ++++.++++++.+|.+..+|..++.++...+
T Consensus       136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~  215 (349)
T 3q7a_A          136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP  215 (349)
T ss_dssp             HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            6 6 8899999999999999999999999999999998888        9999999999999999999999999999988


Q ss_pred             C-------cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCc--------------------HHHHHHHHHHHhcC---
Q 024618          189 Q-------SADAILAYQRALDLKPNYVRAWANMGISYANQGMY--------------------EESVRYYVRALAMN---  238 (265)
Q Consensus       189 ~-------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~a~~~~---  238 (265)
                      .       ++++++++++++..+|++..+|..+..++...|+.                    .+-.+.....+...   
T Consensus       216 ~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (349)
T 3q7a_A          216 GAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE  295 (349)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred             ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence            7       68999999999999999999999999999888765                    22222222222222   


Q ss_pred             ---CCCchhHHHHHHHHHHhCCccccccc
Q 024618          239 ---PKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       239 ---~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                         +..+.++..++.+|...|+.++|.++
T Consensus       296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~  324 (349)
T 3q7a_A          296 DTPLPVPLALEYLADSFIEQNRVDDAAKV  324 (349)
T ss_dssp             SCCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccCCCcHHHHHHHHHHHHhcCCHHHHHHH
Confidence               35567888999999999998888764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.86  E-value=4.4e-21  Score=140.51  Aligned_cols=223  Identities=12%  Similarity=0.028  Sum_probs=160.9

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH-------HHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhh-hh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLL-------GIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS-LG   82 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-la   82 (265)
                      |..|.-+ ..+++..|...|.+++..+|+..++|..+       +.++...++..+++..+++.+.+.|....+++. .|
T Consensus        11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g   89 (282)
T 4f3v_A           11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG   89 (282)
T ss_dssp             HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred             HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence            4445444 46667777777777777777777777666       566666666666666666666666666555555 22


Q ss_pred             hh---hhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 024618           83 VS---HTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA  159 (265)
Q Consensus        83 ~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  159 (265)
                      ..   -+.....++..-.              ++..+...|++++|.+.|.......|.+. ..+.+|.++...++|++|
T Consensus        90 ~y~~~~~~v~~r~dl~La--------------yA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA  154 (282)
T 4f3v_A           90 LYGDITYPVTSPLAITMG--------------FAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDV  154 (282)
T ss_dssp             TTCCCEEECSSHHHHHHH--------------HHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHH
T ss_pred             cccccccccCCHhHHHHH--------------HHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHH
Confidence            10   0000000000000              13456667777777777877777788878 999999999999999999


Q ss_pred             HHHHHHHHhhCCCC--HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC--Cc-chhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618          160 IESFQTALKLKPQD--YSLWNKLGATQANSVQSADAILAYQRALDLK--PN-YVRAWANMGISYANQGMYEESVRYYVRA  234 (265)
Q Consensus       160 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a  234 (265)
                      +..|+++....+..  ..+++.+|.++..+|++++|+..|++++...  |. .+.+++.+|.++.++|+.++|...|+++
T Consensus       155 ~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          155 IDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             HHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999876653221  3589999999999999999999999998644  55 5679999999999999999999999999


Q ss_pred             HhcCCCCchhHHHHHH
Q 024618          235 LAMNPKADNAWQYLRI  250 (265)
Q Consensus       235 ~~~~~~~~~~~~~l~~  250 (265)
                      +..+|+ ..++..|..
T Consensus       235 ~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          235 QTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HHHSCC-HHHHHHHHC
T ss_pred             HhcCCc-HHHHHHHhC
Confidence            999999 777666543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.86  E-value=4.8e-20  Score=143.59  Aligned_cols=230  Identities=10%  Similarity=-0.017  Sum_probs=188.7

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCCh------HHHHHHHHHHhhcCcHHHHHHHHHHHHhcC--------CChH
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENS------EGWRLLGIAHAENDDDQQAIAAMMRAHEAE--------PTNL   75 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~   75 (265)
                      +..+|..+...|++++|+..+++++...|...      .++..+|.++...|++++|+..++++++..        |...
T Consensus        56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  135 (373)
T 1hz4_A           56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE  135 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence            35678899999999999999999998765432      246789999999999999999999999874        3456


Q ss_pred             HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc--------hhhhhhhhchHHHHHHHHHHHhcCC--CC-HHHH-
Q 024618           76 EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA--------PPELSDSLYYADVARLFVEAARMSP--ED-ADVH-  143 (265)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~~~-  143 (265)
                      .++..+|.++...|++++|...+++++...+......        +.++...|++++|...+++++...+  .. .... 
T Consensus       136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~  215 (373)
T 1hz4_A          136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS  215 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence            6788899999999999999999999999888643211        7788999999999999999987632  22 1111 


Q ss_pred             ---HHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc------chhh
Q 024618          144 ---IVLGVLYNLSRQYDKAIESFQTALKLKPQD----YSLWNKLGATQANSVQSADAILAYQRALDLKPN------YVRA  210 (265)
Q Consensus       144 ---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~  210 (265)
                         ...+.++...|++++|...+++++...|..    ...+..+|.++...|++++|...+++++...+.      ...+
T Consensus       216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~  295 (373)
T 1hz4_A          216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN  295 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence               134456889999999999999998876653    235678999999999999999999999876443      2347


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618          211 WANMGISYANQGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  239 (265)
                      +..+|.++...|++++|...+++++...+
T Consensus       296 ~~~la~~~~~~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          296 LLLLNQLYWQAGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence            78899999999999999999999998754

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.86  E-value=4.4e-21  Score=128.86  Aligned_cols=130  Identities=15%  Similarity=0.048  Sum_probs=117.6

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618          127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN  206 (265)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  206 (265)
                      ..+++++..+|++...++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..+|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            45777788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhC
Q 024618          207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG  256 (265)
Q Consensus       207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  256 (265)
                      ++.+++.+|.++..+|++++|+..|+++++++|+++........+...++
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998877666655554443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.85  E-value=5.5e-21  Score=128.95  Aligned_cols=119  Identities=13%  Similarity=0.135  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCC
Q 024618           59 QAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPE  138 (265)
Q Consensus        59 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  138 (265)
                      .+...++++++++|+++.+++.+|.++...|++++|+..|++                               ++..+|+
T Consensus        20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~-------------------------------al~~~P~   68 (151)
T 3gyz_A           20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF-------------------------------LCIYDFY   68 (151)
T ss_dssp             HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------HHHHCTT
T ss_pred             HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------HHHhCCC
Confidence            344556777888888888999998888888887777655544                               4445667


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch
Q 024618          139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV  208 (265)
Q Consensus       139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  208 (265)
                      ++.+|..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|++++++.|+.+
T Consensus        69 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           69 NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            7889999999999999999999999999999999999999999999999999999999999999988764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.85  E-value=1.3e-22  Score=155.58  Aligned_cols=205  Identities=16%  Similarity=0.103  Sum_probs=171.7

Q ss_pred             HHHHHcCChHHHHHHHHH----HHHhCCCChHHHHHHHHHHh------------hcCcHHHHHHHHHHHHhcCCChHHHH
Q 024618           15 QELFRKGLLSEAVLALEA----EVLKNPENSEGWRLLGIAHA------------ENDDDQQAIAAMMRAHEAEPTNLEVL   78 (265)
Q Consensus        15 ~~~~~~~~~~~A~~~~~~----~~~~~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~~~~~~~~   78 (265)
                      ..+...+.+++|+..++.    ++...|..  ++...|....            .++++++|+..+++++...|..+.++
T Consensus        73 ~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~  150 (336)
T 1p5q_A           73 ENLDLPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIV  150 (336)
T ss_dssp             GGGTCCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHH
T ss_pred             CccccchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHH
Confidence            333345578888888888    77788876  5555565443            56788889999999999999999999


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 024618           79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDK  158 (265)
Q Consensus        79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  158 (265)
                      ..+|.++...|++++|+..|++++...|.+.....                +......|....++..+|.++...|++++
T Consensus       151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~----------------~~~~~~~~~~~~~~~nla~~~~~~g~~~~  214 (336)
T 1p5q_A          151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN----------------EEAQKAQALRLASHLNLAMCHLKLQAFSA  214 (336)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS----------------HHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh----------------HHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999888654210                11122233346889999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHH-HHHHHHHHhc
Q 024618          159 AIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEES-VRYYVRALAM  237 (265)
Q Consensus       159 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~  237 (265)
                      |+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus       215 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          215 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 5577777653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.84  E-value=2.2e-21  Score=149.95  Aligned_cols=219  Identities=13%  Similarity=0.135  Sum_probs=107.0

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN   87 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   87 (265)
                      ..|..+|..+...|++++|+..|.++     .++..+..++.++...|++++|+.+++.+.+..+ ++.+...++.+|.+
T Consensus        33 ~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~K  106 (449)
T 1b89_A           33 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAK  106 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHH
Confidence            45777888888888888888888664     3556777788888888888888888888777543 36777778888888


Q ss_pred             hhhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618           88 ELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT  165 (265)
Q Consensus        88 ~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  165 (265)
                      .|++.++.+.++.     |+.....  |..+...|.+++|..+|.++        ..+..+|.++.++|++++|++.+++
T Consensus       107 lg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~K  173 (449)
T 1b89_A          107 TNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARK  173 (449)
T ss_dssp             --CHHHHTTTTTC-----C----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHH
Confidence            8888887766642     3322222  88888889999999888876        3588889999999999999999988


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhH
Q 024618          166 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW  245 (265)
Q Consensus       166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  245 (265)
                      +     +++.+|...+.++...|+++.|..+... +...|++   ...++.+|.+.|++++|+.++++++.+++.+..++
T Consensus       174 A-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~f  244 (449)
T 1b89_A          174 A-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMF  244 (449)
T ss_dssp             H-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHH
T ss_pred             c-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHH
Confidence            8     4788888888999999999999777665 3355544   44588899999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 024618          246 QYLRISLRY  254 (265)
Q Consensus       246 ~~l~~~~~~  254 (265)
                      ..++.+|.+
T Consensus       245 tel~il~~k  253 (449)
T 1b89_A          245 TELAILYSK  253 (449)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998875

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.84  E-value=5.8e-21  Score=139.91  Aligned_cols=171  Identities=12%  Similarity=0.012  Sum_probs=144.4

Q ss_pred             hHHHHHcCChHHHHHHHHHHHHhCCCChHHHH---------------------HHHHHHhhcCcHHHHHHHHHHHHhcCC
Q 024618           14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWR---------------------LLGIAHAENDDDQQAIAAMMRAHEAEP   72 (265)
Q Consensus        14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~   72 (265)
                      +.++...++..+++..+++.+...|....+++                     .++.++...|++++|.+.|..++...|
T Consensus        54 ~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p  133 (282)
T 4f3v_A           54 RVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS  133 (282)
T ss_dssp             HHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            78888889999999999999999887654444                     377889999999999999999999999


Q ss_pred             ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Q 024618           73 TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPE-DADVHIVLGVLYN  151 (265)
Q Consensus        73 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~  151 (265)
                      .+. +.+.+|.++...+++++|+..++.+....+                              |. ...+++.+|.++.
T Consensus       134 ~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d------------------------------~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          134 EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD------------------------------KFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC------------------------------HHHHHHHHHHHHHHHH
T ss_pred             chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC------------------------------cccHHHHHHHHHHHHH
Confidence            888 999999999999999999988865543211                              11 1358999999999


Q ss_pred             HccCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618          152 LSRQYDKAIESFQTALKLK--PQ-DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI  216 (265)
Q Consensus       152 ~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  216 (265)
                      .+|++++|+..|++++...  |. .+.+++.+|.++..+|+.++|...|++++..+|. +.++..|..
T Consensus       183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            9999999999999998643  54 5678999999999999999999999999999999 777666643

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.84  E-value=8.2e-21  Score=144.04  Aligned_cols=192  Identities=10%  Similarity=0.064  Sum_probs=159.9

Q ss_pred             hcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHH
Q 024618           53 ENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEA  132 (265)
Q Consensus        53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  132 (265)
                      ..|++++|.++++++.+..+..         .+...+++++|...|.++           +.++...|++++|+..+.++
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a   62 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE   62 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence            4678999999999998876642         111158899999999887           34677889999999999999


Q ss_pred             HhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618          133 ARMSPED------ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ--D----YSLWNKLGATQANSVQSADAILAYQRA  200 (265)
Q Consensus       133 ~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~  200 (265)
                      +.+.+..      ..++..+|.++...|++++|+.+|++++++.+.  +    ..++..+|.++.. |++++|+.+|+++
T Consensus        63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A  141 (307)
T 2ifu_A           63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA  141 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence            8875432      468889999999999999999999999988443  2    4678899999999 9999999999999


Q ss_pred             HhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHHhCCcccccccC
Q 024618          201 LDLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMNPKAD------NAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       201 ~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      +.+.|..      ..++.++|.++..+|++++|+.+|++++++.|++.      .++..++.++..+|++++|+..|
T Consensus       142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~  218 (307)
T 2ifu_A          142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV  218 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9987643      56888999999999999999999999999876543      36778899999999999998653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=8.1e-20  Score=120.09  Aligned_cols=119  Identities=18%  Similarity=0.222  Sum_probs=112.3

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618          137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI  216 (265)
Q Consensus       137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  216 (265)
                      |.....+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcHHHHHHHHHHHhcC------CCCchhHHHHHHHHHHh
Q 024618          217 SYANQGMYEESVRYYVRALAMN------PKADNAWQYLRISLRYA  255 (265)
Q Consensus       217 ~~~~~g~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~  255 (265)
                      ++..+|++++|+..|+++++++      |++..++..++.+..++
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            9999999999999999999999      99999999888887653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.84  E-value=8.8e-20  Score=127.19  Aligned_cols=136  Identities=17%  Similarity=0.279  Sum_probs=122.7

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHhhcCc-
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT-QANSVQS-  190 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-  190 (265)
                      +..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.+ +...|++ 
T Consensus        17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             TCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence            44467788899999999999999999999999999999999999999999999999999999999999999 8899999 


Q ss_pred             -HHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHH
Q 024618          191 -ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL  248 (265)
Q Consensus       191 -~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l  248 (265)
                       ++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.....+
T Consensus        97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  155 (177)
T 2e2e_A           97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV  155 (177)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence             9999999999999999999999999999999999999999999999999987654433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.83  E-value=3.2e-19  Score=145.16  Aligned_cols=184  Identities=11%  Similarity=0.112  Sum_probs=160.9

Q ss_pred             cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhc
Q 024618           56 DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARM  135 (265)
Q Consensus        56 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  135 (265)
                      ..++|+..+.+++..+|++..+|...+.++...|+.....                     .....+++++..++++++.
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~---------------------~~~~~~~~eL~~~~~~l~~  102 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPE---------------------ESAALVKAELGFLESCLRV  102 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHH---------------------HHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchh---------------------hhhhhHHHHHHHHHHHHHh
Confidence            3467899999999999999999999999888776510000                     0011246677778888888


Q ss_pred             CCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc-CcHHHHHHHHHHHhcCCcchhhHH
Q 024618          136 SPEDADVHIVLGVLYNLSR--QYDKAIESFQTALKLKPQDYSLWNKLGATQANSV-QSADAILAYQRALDLKPNYVRAWA  212 (265)
Q Consensus       136 ~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~  212 (265)
                      +|++..+|...+.++...|  ++++++..++++++.+|.+..+|...+.+....| .+++++++++++++.+|.+..+|.
T Consensus       103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~  182 (567)
T 1dce_A          103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  182 (567)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence            8999999999999999999  7799999999999999999999999999999999 899999999999999999999999


Q ss_pred             HHHHHHHhc--------------CCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccc
Q 024618          213 NMGISYANQ--------------GMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPN  260 (265)
Q Consensus       213 ~l~~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  260 (265)
                      .++.++...              +.++++++++.+++..+|++..+|++++.++...+++++
T Consensus       183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence            999999885              567999999999999999999999999999999998666

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.83  E-value=6.1e-20  Score=123.99  Aligned_cols=121  Identities=17%  Similarity=0.092  Sum_probs=94.7

Q ss_pred             HHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCH
Q 024618           61 IAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDA  140 (265)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  140 (265)
                      ...+++++..+|+++.+++.+|.++...|++++|+..|+++                               +..+|.++
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~a-------------------------------l~~~p~~~   55 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQAL-------------------------------CVLDHYDS   55 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------HHHCTTCH
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHH-------------------------------HHcCcccH
Confidence            34567777888888888888888887777776666554444                               44456678


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHH
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA  212 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  212 (265)
                      .++..+|.++...|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++..|+++....
T Consensus        56 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A           56 RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence            888888888888888888888888888888888888888888888888888888888888888887765543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.83  E-value=3.6e-20  Score=150.71  Aligned_cols=196  Identities=10%  Similarity=0.040  Sum_probs=170.9

Q ss_pred             HHHcCCh-HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCc----------HHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618           17 LFRKGLL-SEAVLALEAEVLKNPENSEGWRLLGIAHAENDD----------DQQAIAAMMRAHEAEPTNLEVLLSLGVSH   85 (265)
Q Consensus        17 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~   85 (265)
                      ....|++ ++|+..+++++..+|++..+|...+.++...|+          +++++..++++++.+|.+..+|...+.++
T Consensus        38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l  117 (567)
T 1dce_A           38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  117 (567)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3445555 678999999999999999999999999999988          99999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHH
Q 024618           86 TNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR-QYDKAIESFQ  164 (265)
Q Consensus        86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~  164 (265)
                      ...+.+                             ++++++..+.++++.+|.+..+|...+.+....| .++++++++.
T Consensus       118 ~~l~~~-----------------------------~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~  168 (567)
T 1dce_A          118 SRLPEP-----------------------------NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  168 (567)
T ss_dssp             HTCSSC-----------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             HHcccc-----------------------------cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence            887721                             1344555666666778888999999999999999 9999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhh--------------cCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHH----
Q 024618          165 TALKLKPQDYSLWNKLGATQANS--------------VQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE----  226 (265)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----  226 (265)
                      ++++.+|.+..+|..++.++...              +.++++++++.+++..+|++..+|+.++.++...+++++    
T Consensus       169 ~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~  248 (567)
T 1dce_A          169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCV  248 (567)
T ss_dssp             TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEE
T ss_pred             HHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeee
Confidence            99999999999999999998885              667999999999999999999999999999999998776    


Q ss_pred             --------HHHHHHHHHhcCCCC
Q 024618          227 --------SVRYYVRALAMNPKA  241 (265)
Q Consensus       227 --------A~~~~~~a~~~~~~~  241 (265)
                              |+..|.+++.++|..
T Consensus       249 ~~~~~~~~~~~~f~~~i~~~~~~  271 (567)
T 1dce_A          249 HVSREEACLSVCFSRPLTVGSRM  271 (567)
T ss_dssp             EEETTTTEEEEEEEEEECTTBTT
T ss_pred             eeccCCceEEEEeccceeccccc
Confidence                    566677777777653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.82  E-value=3.3e-18  Score=146.90  Aligned_cols=223  Identities=15%  Similarity=0.114  Sum_probs=169.1

Q ss_pred             hhHHHHHcCChHHHHHHHHHHH--------------------H--hCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618           13 EGQELFRKGLLSEAVLALEAEV--------------------L--KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA   70 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~--------------------~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~   70 (265)
                      .|..+...|.+++|..+|+++-                    +  ...+.+.+|+.+|.++...|++++|+..|.++   
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            4666666666666666665431                    1  11356789999999999999999999999876   


Q ss_pred             CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC--CchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024618           71 EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGT--IAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGV  148 (265)
Q Consensus        71 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  148 (265)
                        +++..+..+|.++.+.|++++|++++..+.+..++...  ..+..+.+.+++++ ++.|   + ..+ +...+..+|.
T Consensus      1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~f---I-~~~-n~ad~~~iGd 1203 (1630)
T 1xi4_A         1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEF---I-NGP-NNAHIQQVGD 1203 (1630)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHH---H-hCC-CHHHHHHHHH
Confidence              78889999999999999999999999999887754321  12677777777764 3333   2 233 3455667888


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC-----------------------
Q 024618          149 LYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP-----------------------  205 (265)
Q Consensus       149 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------------------  205 (265)
                      .+...|++++|..+|.++        ..|..+|.++.+.|++++|++.++++....+                       
T Consensus      1204 ~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A         1204 RCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred             HHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence            888888888888888885        4778888888888888888888887744332                       


Q ss_pred             --cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618          206 --NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       206 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  254 (265)
                        .+++.+..++..|...|.+++|+.++++++.++|.+...+..++.++.+
T Consensus      1276 Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1276 IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred             hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence              1334455778888999999999999999999999998888888888765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.82  E-value=4.4e-19  Score=116.96  Aligned_cols=124  Identities=21%  Similarity=0.337  Sum_probs=118.9

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHH
Q 024618          136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG  215 (265)
Q Consensus       136 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  215 (265)
                      +|.+...+..+|..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|.++.++..+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcc
Q 024618          216 ISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYP  259 (265)
Q Consensus       216 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  259 (265)
                      .++...|++++|+.+++++++.+|+++.++..++.++..+|+++
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999874

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.82  E-value=6.8e-19  Score=151.10  Aligned_cols=238  Identities=13%  Similarity=0.113  Sum_probs=185.0

Q ss_pred             CCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618            6 GHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH   85 (265)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   85 (265)
                      .+..|+..|..+...|++++|+..|.++     +++..+..+|.++.+.|++++|++++..+.+..++ +.+...+|.+|
T Consensus      1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaY 1177 (1630)
T 1xi4_A         1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFAL 1177 (1630)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHH
Confidence            3456889999999999999999999886     78999999999999999999999999999987743 22233477777


Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCCCCC--chhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618           86 TNELEQAAALKYLYGWLRHHPKYGTI--APPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF  163 (265)
Q Consensus        86 ~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  163 (265)
                      .+.+++++ ++.|.    ..++....  +|..+...|++++|..+|.++        ..|..++.++...|++++|++.+
T Consensus      1178 AKl~rlee-le~fI----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A         1178 AKTNRLAE-LEEFI----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred             HhhcCHHH-HHHHH----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHH
Confidence            77777664 33332    12222221  277777777777777777764        35777777777777777777777


Q ss_pred             HHHHhhCC-------------------------CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 024618          164 QTALKLKP-------------------------QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISY  218 (265)
Q Consensus       164 ~~~~~~~~-------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  218 (265)
                      +++....+                         .+++.+..++..|...|.+++|+..+++++.++|.+...+..+|.++
T Consensus      1245 rKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A         1245 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred             HHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHH
Confidence            77643322                         23455667788899999999999999999999999999998888887


Q ss_pred             Hh--cCCcHHHHHHHHHHHhcCC-----CCchhHHHHHHHHHHhCCccccc
Q 024618          219 AN--QGMYEESVRYYVRALAMNP-----KADNAWQYLRISLRYAGRYPNRG  262 (265)
Q Consensus       219 ~~--~g~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~  262 (265)
                      .+  -++..++++.|...+.+.|     ++...|..+..+|.+-|++++|+
T Consensus      1325 aKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A         1325 SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred             HhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            75  4577888899988888777     67889999999999999999987

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.82  E-value=2.4e-20  Score=139.54  Aligned_cols=195  Identities=10%  Similarity=-0.085  Sum_probs=148.1

Q ss_pred             CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hh
Q 024618           38 PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PP  114 (265)
Q Consensus        38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~  114 (265)
                      |.+...+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++...+   |.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            567889999999999999999999999999999999999999999999999999999999999998888776555   77


Q ss_pred             hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHH
Q 024618          115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI  194 (265)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  194 (265)
                      ++...|++++|+..++++++.+|++...+.........   ..++...........|.++.+...++.+.  .|++++|+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~  155 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL  155 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence            77778888888888888877776543211111111111   11222222233345566677766666654  68888999


Q ss_pred             HHHHHHHhcCCcchhhHHHHHHHHHhc-CCcHHHHHHHHHHHhc
Q 024618          195 LAYQRALDLKPNYVRAWANMGISYANQ-GMYEESVRYYVRALAM  237 (265)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~  237 (265)
                      +.++++++.+|.+......++.++... +.+++|...|.++.+.
T Consensus       156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999999988888877777777777766 6788888888887763

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.82  E-value=5.2e-19  Score=117.09  Aligned_cols=122  Identities=16%  Similarity=0.254  Sum_probs=117.3

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHH
Q 024618          136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG  215 (265)
Q Consensus       136 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  215 (265)
                      .|.....+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618          216 ISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR  257 (265)
Q Consensus       216 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  257 (265)
                      .++...|++++|+.+++++++.+|++..++..++.++..+|+
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999998875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.82  E-value=5.6e-19  Score=121.56  Aligned_cols=116  Identities=18%  Similarity=0.268  Sum_probs=107.9

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHH
Q 024618          136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG  215 (265)
Q Consensus       136 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  215 (265)
                      .+.+...+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 024618          216 ISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS  251 (265)
Q Consensus       216 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  251 (265)
                      .++..+|++++|+.+|+++++++|++..++...+..
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            999999999999999999999999999866655544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.82  E-value=2.3e-19  Score=116.84  Aligned_cols=108  Identities=44%  Similarity=0.713  Sum_probs=97.4

Q ss_pred             CCCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhh
Q 024618            2 NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSL   81 (265)
Q Consensus         2 np~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   81 (265)
                      ||+...+.++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..++++++++|+++.++..+
T Consensus        12 ~p~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l   91 (121)
T 1hxi_A           12 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL   91 (121)
T ss_dssp             CGGGGCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            56555567889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKYG  109 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~  109 (265)
                      |.++...|++++|+..++++++.+|++.
T Consensus        92 a~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           92 AVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            9999999999999999999999988754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.82  E-value=1.9e-18  Score=114.45  Aligned_cols=121  Identities=35%  Similarity=0.641  Sum_probs=107.6

Q ss_pred             hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHH
Q 024618          120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQR  199 (265)
Q Consensus       120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  199 (265)
                      |++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++
T Consensus        15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~   94 (136)
T 2fo7_A           15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK   94 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            33444445555555566777888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          200 ALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       200 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      ++...|.++.++..+|.++...|++++|+..++++++.+|+
T Consensus        95 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           95 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            99999999999999999999999999999999999998886

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.82  E-value=3.5e-19  Score=127.76  Aligned_cols=168  Identities=15%  Similarity=0.067  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCC
Q 024618           58 QQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSP  137 (265)
Q Consensus        58 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  137 (265)
                      .+|+..|+++.+.  .++.+++.+|.++...+++++|+.+|+++.+                                 +
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---------------------------------~   47 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA---------------------------------Q   47 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------------------T
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---------------------------------c
Confidence            3578888888875  6889999999999998888888877766654                                 2


Q ss_pred             CCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHHHHHHHHHhcCC--cc
Q 024618          138 EDADVHIVLGVLYNLSR----QYDKAIESFQTALKLKPQDYSLWNKLGATQAN----SVQSADAILAYQRALDLKP--NY  207 (265)
Q Consensus       138 ~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~--~~  207 (265)
                      .++.+++.+|.+|.. +    ++++|+.+|+++.+  +.++.+++.+|.+|..    .+++++|+.+|+++.+..|  .+
T Consensus        48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  124 (212)
T 3rjv_A           48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA  124 (212)
T ss_dssp             TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred             CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence            468899999999998 7    99999999999965  5789999999999998    8999999999999999988  45


Q ss_pred             hhhHHHHHHHHHh----cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-C-----Cccccccc
Q 024618          208 VRAWANMGISYAN----QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYA-G-----RYPNRGDI  264 (265)
Q Consensus       208 ~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~  264 (265)
                      +.+++.+|.+|..    .+++++|+.+|+++++. |.++.+++.||.+|... |     ++++|+..
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~  190 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHW  190 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence            8999999999999    88999999999999998 77788999999999864 3     67777654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.81  E-value=4.8e-18  Score=127.97  Aligned_cols=173  Identities=8%  Similarity=0.048  Sum_probs=132.8

Q ss_pred             hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH------HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchh
Q 024618           41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL------EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPP  114 (265)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  114 (265)
                      ...+...+..+...|++++|++.+.++++..|...      ..++.+|.++...|++++|+..+++++...+.....   
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---  151 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---  151 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---
Confidence            33455667777788888888888888887766543      234556666666777777777776666654432110   


Q ss_pred             hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHhh
Q 024618          115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL---KLKPQDY----SLWNKLGATQANS  187 (265)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~----~~~~~l~~~~~~~  187 (265)
                                            .....++..+|.+|...|++++|+.++++++   +..|++.    .++.++|.++..+
T Consensus       152 ----------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~  209 (293)
T 2qfc_A          152 ----------------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD  209 (293)
T ss_dssp             ----------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred             ----------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH
Confidence                                  0125688999999999999999999999999   4566543    6899999999999


Q ss_pred             cCcHHHHHHHHHHHhcCCc------chhhHHHHHHHHHhcCCcHHH-HHHHHHHHhcC
Q 024618          188 VQSADAILAYQRALDLKPN------YVRAWANMGISYANQGMYEES-VRYYVRALAMN  238 (265)
Q Consensus       188 ~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~~  238 (265)
                      |++++|+.++++++...+.      ...+++.+|.++..+|++++| ..++++++.+.
T Consensus       210 ~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            9999999999999987543      267889999999999999999 88899998763

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.81  E-value=5.4e-20  Score=130.67  Aligned_cols=144  Identities=15%  Similarity=0.136  Sum_probs=118.6

Q ss_pred             hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHH
Q 024618          119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY----------------SLWNKLGA  182 (265)
Q Consensus       119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~  182 (265)
                      .+.++++.+.+.......+.....+..+|..+...|++++|+..|++++...|.++                .++..+|.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~   96 (198)
T 2fbn_A           17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT   96 (198)
T ss_dssp             -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence            33344444444333333344567788899999999999999999999999988887                88999999


Q ss_pred             HHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccc
Q 024618          183 TQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRG  262 (265)
Q Consensus       183 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  262 (265)
                      ++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..++.
T Consensus        97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A           97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888777665

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.81  E-value=5.5e-18  Score=112.20  Aligned_cols=134  Identities=32%  Similarity=0.482  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhc
Q 024618           42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY  121 (265)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (265)
                      .+++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++.                  
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------   63 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------   63 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------
Confidence            35667777777777777777777777777777777777777777777776666655544443                  


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618          122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRAL  201 (265)
Q Consensus       122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  201 (265)
                                   ..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++
T Consensus        64 -------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           64 -------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             -------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             -------------HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence                         3455566777778888888888888888888888888888888888888888888888888888888


Q ss_pred             hcCCc
Q 024618          202 DLKPN  206 (265)
Q Consensus       202 ~~~~~  206 (265)
                      ..+|.
T Consensus       131 ~~~~~  135 (136)
T 2fo7_A          131 ELDPR  135 (136)
T ss_dssp             HHSTT
T ss_pred             ccCCC
Confidence            77765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.81  E-value=6.1e-21  Score=152.17  Aligned_cols=146  Identities=13%  Similarity=0.151  Sum_probs=129.6

Q ss_pred             hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHHHH
Q 024618          117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---------------YSLWNKLG  181 (265)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~  181 (265)
                      ...+++++|+..++.++...|.....+..+|..+...|++++|+..|+++++++|.+               ..++.++|
T Consensus       245 ~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla  324 (457)
T 1kt0_A          245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA  324 (457)
T ss_dssp             EEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence            355677778888888888888888999999999999999999999999999999988               68999999


Q ss_pred             HHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccc
Q 024618          182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNR  261 (265)
Q Consensus       182 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  261 (265)
                      .++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+|++++|
T Consensus       325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887766


Q ss_pred             c
Q 024618          262 G  262 (265)
Q Consensus       262 ~  262 (265)
                      .
T Consensus       405 ~  405 (457)
T 1kt0_A          405 D  405 (457)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.80  E-value=3.7e-20  Score=143.12  Aligned_cols=235  Identities=14%  Similarity=0.017  Sum_probs=147.1

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN   87 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   87 (265)
                      ..+...+..+...|++++|+.+++.+.+..+ ++.+...++.+|.+.|++.++..+++     .| +..++..+|..+..
T Consensus        62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~  134 (449)
T 1b89_A           62 SSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYD  134 (449)
T ss_dssp             ------------------------------------------------CHHHHTTTTT-----CC---------------
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHH
Confidence            3566778888899999999999999887544 47778889999999999999988875     24 44699999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618           88 ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL  167 (265)
Q Consensus        88 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  167 (265)
                      .|.+++|..+|.++     ++...++.++...|++++|++.++++     .++.+|...+.++...|+++.|..+... +
T Consensus       135 ~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L  203 (449)
T 1b89_A          135 EKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-I  203 (449)
T ss_dssp             --CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-T
T ss_pred             cCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-H
Confidence            99999999999977     22233399999999999999999999     4689999999999999999999777765 2


Q ss_pred             hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh--cCCcHHHHHHHHHHHhcCC-----C
Q 024618          168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN--QGMYEESVRYYVRALAMNP-----K  240 (265)
Q Consensus       168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~-----~  240 (265)
                      ..   +|+-...+..+|.+.|++++|+..+++++.+++.+..++..+|.+|.+  .++..+.++.|...+.+.|     +
T Consensus       204 ~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~  280 (449)
T 1b89_A          204 VV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE  280 (449)
T ss_dssp             TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred             Hh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            23   445556788999999999999999999999999999999999998875  4677788888888888877     7


Q ss_pred             CchhHHHHHHHHHHhCCcccccc
Q 024618          241 ADNAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       241 ~~~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      +...|..+..+|.+-++++.|+.
T Consensus       281 ~~~~w~e~~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          281 QAHLWAELVFLYDKYEEYDNAII  303 (449)
T ss_dssp             TTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhchHHHHHH
Confidence            88999999999999999998864

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.80  E-value=6.5e-18  Score=121.19  Aligned_cols=144  Identities=14%  Similarity=0.143  Sum_probs=116.8

Q ss_pred             HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 024618           76 EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ  155 (265)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  155 (265)
                      ..++.+|.++...|++++|+..+++++                                 .| ++.++..+|.++...|+
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~---------------------------------~~-~~~~~~~lg~~~~~~g~   52 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ---------------------------------DP-HSRICFNIGCMYTILKN   52 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS---------------------------------SC-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc---------------------------------CC-ChHHHHHHHHHHHHcCC
Confidence            345666777777777766666665442                                 22 47788999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch----------------hhHHHHHHHHH
Q 024618          156 YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV----------------RAWANMGISYA  219 (265)
Q Consensus       156 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~  219 (265)
                      +++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++..|.+.                .+++.+|.++.
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  132 (213)
T 1hh8_A           53 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA  132 (213)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999777655                88999999999


Q ss_pred             hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024618          220 NQGMYEESVRYYVRALAMNPKADNAWQYLRISLR  253 (265)
Q Consensus       220 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  253 (265)
                      ..|++++|+..++++++.+|++.......+....
T Consensus       133 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~  166 (213)
T 1hh8_A          133 KKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV  166 (213)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence            9999999999999999999987655544444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.80  E-value=5e-19  Score=118.78  Aligned_cols=126  Identities=14%  Similarity=0.061  Sum_probs=93.6

Q ss_pred             HHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHH
Q 024618           62 AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDAD  141 (265)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  141 (265)
                      ..+++++..+|++...++.+|.++...|++++|+..|++                               ++..+|+++.
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~-------------------------------al~~~p~~~~   53 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQA-------------------------------LCMLDHYDAR   53 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------HHHHCTTCHH
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHH-------------------------------HHHhCCccHH
Confidence            456667777777777777777777777776666654444                               4444566778


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISY  218 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  218 (265)
                      ++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++........+.
T Consensus        54 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  130 (142)
T 2xcb_A           54 YFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG  130 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888887766655444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.80  E-value=9.6e-19  Score=114.94  Aligned_cols=109  Identities=17%  Similarity=0.265  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch-------hhHH
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV-------RAWA  212 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~  212 (265)
                      ..++..+|..++..|++++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|++.       .++.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            567889999999999999999999999999999999999999999999999999999999999988763       4788


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHH
Q 024618          213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR  249 (265)
Q Consensus       213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~  249 (265)
                      .+|.++..+|++++|+++|+++++..|+ ++....+.
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            8999999999999999999999999886 55554443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.79  E-value=9.7e-18  Score=109.51  Aligned_cols=121  Identities=37%  Similarity=0.633  Sum_probs=113.5

Q ss_pred             CCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHH
Q 024618          136 SPED-ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM  214 (265)
Q Consensus       136 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  214 (265)
                      +|.. ...+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   83 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL   83 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            4544 678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhC
Q 024618          215 GISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG  256 (265)
Q Consensus       215 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  256 (265)
                      |.++...|++++|+..++++++.+|+++.++..++.++...|
T Consensus        84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999988765

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.79  E-value=1.4e-18  Score=119.57  Aligned_cols=124  Identities=14%  Similarity=0.149  Sum_probs=72.7

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (265)
                      |..+...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++
T Consensus        20 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~   99 (166)
T 1a17_A           20 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA   99 (166)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHH
Confidence            45555556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHhcCCcchhhHHHH--HHHHHhcCCcHHHHHHHHHHHh
Q 024618          193 AILAYQRALDLKPNYVRAWANM--GISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       193 A~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      |+..+++++..+|.+..++..+  +..+...|++++|+..+.++..
T Consensus       100 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A          100 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            6666666666666555555332  3335555666666666555443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.79  E-value=1.7e-18  Score=115.42  Aligned_cols=123  Identities=20%  Similarity=0.228  Sum_probs=113.1

Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHH
Q 024618          135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM  214 (265)
Q Consensus       135 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  214 (265)
                      .+|.++..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHhcCCC-----CchhHHHHHHHHHHhCC
Q 024618          215 GISYANQGMYEESVRYYVRALAMNPK-----ADNAWQYLRISLRYAGR  257 (265)
Q Consensus       215 ~~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~  257 (265)
                      |.++...|++++|+..|+++++++|+     +..+...+..+..+...
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988     66777777777665543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.79  E-value=9e-19  Score=122.04  Aligned_cols=137  Identities=19%  Similarity=0.222  Sum_probs=107.1

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhh-hhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVS-HTNE   88 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~-~~~~   88 (265)
                      .+..+..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.+ +...
T Consensus        13 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~   92 (177)
T 2e2e_A           13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA   92 (177)
T ss_dssp             SSTTTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred             HhhhhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            455566677889999999999999999999999999999999999999999999999999999998888888888 6666


Q ss_pred             hhH--HHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618           89 LEQ--AAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA  166 (265)
Q Consensus        89 ~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  166 (265)
                      |++  ++|+..+                               +++++.+|+++.++..+|.++...|++++|+..++++
T Consensus        93 ~~~~~~~A~~~~-------------------------------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  141 (177)
T 2e2e_A           93 SQHMTAQTRAMI-------------------------------DKALALDSNEITALMLLASDAFMQANYAQAIELWQKV  141 (177)
T ss_dssp             TTCCCHHHHHHH-------------------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCcchHHHHHHH-------------------------------HHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            665  5555444                               4444456667788888888888888888888888888


Q ss_pred             HhhCCCCHHHH
Q 024618          167 LKLKPQDYSLW  177 (265)
Q Consensus       167 ~~~~~~~~~~~  177 (265)
                      ++.+|+++...
T Consensus       142 l~~~p~~~~~~  152 (177)
T 2e2e_A          142 MDLNSPRINRT  152 (177)
T ss_dssp             HHTCCTTSCHH
T ss_pred             HhhCCCCccHH
Confidence            88888776543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.79  E-value=1.6e-18  Score=115.57  Aligned_cols=113  Identities=13%  Similarity=0.148  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHhhcCcHHHHHHHHHHHhc----
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ-------DYS-----LWNKLGATQANSVQSADAILAYQRALDL----  203 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~----  203 (265)
                      ...+...|..+...|++++|+..|+++++++|+       +..     +|.++|.++..+|++++|+..+++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            567888999999999999999999999999999       444     9999999999999999999999999999    


Q ss_pred             ---CCcchhhH----HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 024618          204 ---KPNYVRAW----ANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISL  252 (265)
Q Consensus       204 ---~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  252 (265)
                         +|+++.+|    +++|.++..+|++++|+..|+++++++|++..+...+..+-
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~  146 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM  146 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence               99999999    99999999999999999999999999999876665555543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.78  E-value=2e-18  Score=118.51  Aligned_cols=122  Identities=13%  Similarity=0.095  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKL------------------KPQDYSLWNKLGATQANSVQSADAILAYQRAL  201 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  201 (265)
                      ...+...|..++..|++++|+..|.+++..                  +|.++.++.++|.++...|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            567889999999999999999999999998                  66777899999999999999999999999999


Q ss_pred             hcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhCCcccc
Q 024618          202 DLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD-NAWQYLRISLRYAGRYPNR  261 (265)
Q Consensus       202 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A  261 (265)
                      .++|+++.+++.+|.++..+|++++|+..|+++++++|+++ .+...++.+....++..+.
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~  151 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD  151 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998 6777888887776655544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.78  E-value=2.8e-18  Score=111.64  Aligned_cols=102  Identities=21%  Similarity=0.251  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ  221 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  221 (265)
                      .++.+|..+...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhcCCCCch
Q 024618          222 GMYEESVRYYVRALAMNPKADN  243 (265)
Q Consensus       222 g~~~~A~~~~~~a~~~~~~~~~  243 (265)
                      |++++|+..++++++.+|++..
T Consensus        99 g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHC-------
T ss_pred             CCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999998653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.78  E-value=1.7e-17  Score=123.16  Aligned_cols=230  Identities=8%  Similarity=-0.060  Sum_probs=166.0

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCCh-HHHHHHHHHHhhcCcHH---------H------------HHHHHHH
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENS-EGWRLLGIAHAENDDDQ---------Q------------AIAAMMR   66 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~---------~------------A~~~~~~   66 (265)
                      .-+--.+-.+-.|+|..++....   +..|.+. .....+.+++..+|++.         .            |+..+++
T Consensus        15 ~~lf~ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~~~a~~~l~~   91 (310)
T 3mv2_B           15 MDYFNIKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELEN   91 (310)
T ss_dssp             CCTHHHHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhcccHHHHHHH
Confidence            33445667778899988887443   2333332 23344455555555442         1            3445555


Q ss_pred             HHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCC--CCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCC---
Q 024618           67 AHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHP--KYGTIA---PPELSDSLYYADVARLFVEAARMSPE---  138 (265)
Q Consensus        67 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~---  138 (265)
                      .++..+....++..+|.++...|++++|++.+.+++..+|  ......   +.++...|+.+.|.+.++++.+.+|+   
T Consensus        92 l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~  171 (310)
T 3mv2_B           92 LLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVS  171 (310)
T ss_dssp             TTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccc
Confidence            5555445566678899999999999999999999988887  333333   88899999999999999999888883   


Q ss_pred             -CHHHHHHH--HHHHHHcc--CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc--------
Q 024618          139 -DADVHIVL--GVLYNLSR--QYDKAIESFQTALKLKPQ--DYSLWNKLGATQANSVQSADAILAYQRALDL--------  203 (265)
Q Consensus       139 -~~~~~~~l--~~~~~~~~--~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------  203 (265)
                       +..+...+  +.+.+..|  ++.+|...|+++.+..|+  .+..+.+   ++..+|++++|...++.+++.        
T Consensus       172 ~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~  248 (310)
T 3mv2_B          172 GDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKE  248 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCH
T ss_pred             cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccc
Confidence             23333444  44466556  899999999998888776  2333333   889999999999999987776        


Q ss_pred             --CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618          204 --KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ  246 (265)
Q Consensus       204 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  246 (265)
                        +|+++.++.+++.+...+|+  +|.++++++.+..|+++.+..
T Consensus       249 ~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          249 NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence              47889999888888888887  889999999999999875543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.78  E-value=2.1e-17  Score=106.85  Aligned_cols=115  Identities=18%  Similarity=0.208  Sum_probs=109.4

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 024618          139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISY  218 (265)
Q Consensus       139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  218 (265)
                      .+..+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024618          219 ANQGMYEESVRYYVRALAMNPKADNAWQYLRISLR  253 (265)
Q Consensus       219 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  253 (265)
                      ...|++++|+..++++++.+|+++.++..++.+..
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999998887753

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.78  E-value=4.6e-17  Score=122.62  Aligned_cols=166  Identities=11%  Similarity=0.038  Sum_probs=138.4

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChH------HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHH
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSE------GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEV   77 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~   77 (265)
                      ++..+..+...|++++|+..+.++++..|....      .++.+|.++...|++++|+.+++++++..+..      ..+
T Consensus        78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 2qfc_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            346788899999999999999999998876543      45678899999999999999999999865443      568


Q ss_pred             HhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHc
Q 024618           78 LLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPED----ADVHIVLGVLYNLS  153 (265)
Q Consensus        78 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~  153 (265)
                      +..+|.+|...|++++|+.+++++++..                            +..|++    ..++.++|.++...
T Consensus       158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~----------------------------~~~~~~~~~~~~~~~nlg~~y~~~  209 (293)
T 2qfc_A          158 ENAIANIYAENGYLKKGIDLFEQILKQL----------------------------EALHDNEEFDVKVRYNHAKALYLD  209 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------------------HhcCccccchHHHHHhHHHHHHHH
Confidence            8999999999999999999998877431                            112222    26889999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhhcCcHHH-HHHHHHHHhc
Q 024618          154 RQYDKAIESFQTALKLKPQ------DYSLWNKLGATQANSVQSADA-ILAYQRALDL  203 (265)
Q Consensus       154 ~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~  203 (265)
                      |++++|+.++++++++.+.      .+.++..+|.++...|++++| ..++++++.+
T Consensus       210 ~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            9999999999999987532      267899999999999999999 7889998865

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.78  E-value=4.1e-17  Score=116.95  Aligned_cols=131  Identities=18%  Similarity=0.154  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhch
Q 024618           43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYY  122 (265)
Q Consensus        43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (265)
                      .++.+|.++...|++++|+..|++++  +| ++.++..+|.++...|++++|+..+++++.                   
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------------------   65 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSIN-------------------   65 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------
Confidence            35566677777777777777777664  22 556666777766666666555544444433                   


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHh
Q 024618          123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY----------------SLWNKLGATQAN  186 (265)
Q Consensus       123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~  186 (265)
                                  .+|.++.++..+|.++...|++++|+..++++++..|.+.                .++..+|.++..
T Consensus        66 ------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  133 (213)
T 1hh8_A           66 ------------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK  133 (213)
T ss_dssp             ------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred             ------------hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence                        3445566677777777777777777777777777666655                777777777777


Q ss_pred             hcCcHHHHHHHHHHHhcCCcc
Q 024618          187 SVQSADAILAYQRALDLKPNY  207 (265)
Q Consensus       187 ~~~~~~A~~~~~~~~~~~~~~  207 (265)
                      .|++++|+..|+++++..|++
T Consensus       134 ~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          134 KEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccCHHHHHHHHHHHHHcCccc
Confidence            777777777777777777765

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.77  E-value=2e-17  Score=124.59  Aligned_cols=167  Identities=10%  Similarity=0.048  Sum_probs=132.7

Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHhcCCChHH------HHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhh
Q 024618           46 LLGIAHAENDDDQQAIAAMMRAHEAEPTNLE------VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDS  119 (265)
Q Consensus        46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (265)
                      ..+..+...|++++|...++++++..+..+.      .+..+|.++...+++++|+.++++++...+.....        
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~--------  151 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV--------  151 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT--------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH--------
Confidence            3467788889999999999999887766544      33357777777788888888888877755442211        


Q ss_pred             hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---C----CCCHHHHHHHHHHHHhhcCcHH
Q 024618          120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL---K----PQDYSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~  192 (265)
                                       .....++..+|.+|...|++++|+.+|+++++.   .    +....++.++|.++..+|++++
T Consensus       152 -----------------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~  214 (293)
T 3u3w_A          152 -----------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE  214 (293)
T ss_dssp             -----------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             -----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHH
Confidence                             011457899999999999999999999999953   1    2224688999999999999999


Q ss_pred             HHHHHHHHHhcCCcc------hhhHHHHHHHHHhcCC-cHHHHHHHHHHHhc
Q 024618          193 AILAYQRALDLKPNY------VRAWANMGISYANQGM-YEESVRYYVRALAM  237 (265)
Q Consensus       193 A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~  237 (265)
                      |+.++++++++.+..      +.++..+|.++..+|+ +++|++++++++.+
T Consensus       215 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          215 SLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            999999999876443      6789999999999995 59999999999976

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.77  E-value=1.2e-17  Score=125.90  Aligned_cols=168  Identities=13%  Similarity=0.047  Sum_probs=137.6

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCChH------HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHHHh
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENSE------GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEVLL   79 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~   79 (265)
                      ..+..++..|++++|+..+++++...+..+.      .+..+|.++...+++++|+.+++++++..+..      ..++.
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            4577889999999999999999998777655      23358999999999999999999999965432      34789


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 024618           80 SLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA  159 (265)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  159 (265)
                      .+|.+|...|++++|+.+++++++...                        ......+....++.++|.++...|++++|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~------------------------~~~~~~~~~~~~~~nlg~~y~~~~~y~~A  215 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLE------------------------ALHDNEEFDVKVRYNHAKALYLDSRYEES  215 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHH------------------------HSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHH------------------------hcccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence            999999999999999999988775311                        11011123356889999999999999999


Q ss_pred             HHHHHHHHhhCCCC------HHHHHHHHHHHHhhcC-cHHHHHHHHHHHhc
Q 024618          160 IESFQTALKLKPQD------YSLWNKLGATQANSVQ-SADAILAYQRALDL  203 (265)
Q Consensus       160 ~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~  203 (265)
                      +.++++++++.+..      +.++..+|.++..+|+ +++|+.+|++++.+
T Consensus       216 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            99999999875433      7899999999999995 59999999999876

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.77  E-value=7.5e-19  Score=124.73  Aligned_cols=173  Identities=13%  Similarity=0.029  Sum_probs=114.2

Q ss_pred             HHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHH
Q 024618           48 GIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVAR  127 (265)
Q Consensus        48 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  127 (265)
                      +......|+++++.+.+.......+.....+..+|..+...|++++|+..|++++...|.++......          ..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~----------~~   80 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI----------LL   80 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH----------HH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh----------HH
Confidence            33444455555555555444444444555566666666666666666666666666555543322100          00


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618          128 LFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY  207 (265)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  207 (265)
                      .....+     ...++..+|.++...|++++|+..++++++.+|.++.+++.+|.++...|++++|+..|++++..+|++
T Consensus        81 ~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  155 (198)
T 2fbn_A           81 DKKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  155 (198)
T ss_dssp             HHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            000111     157889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhcCCcHHHH-HHHHHHH
Q 024618          208 VRAWANMGISYANQGMYEESV-RYYVRAL  235 (265)
Q Consensus       208 ~~~~~~l~~~~~~~g~~~~A~-~~~~~a~  235 (265)
                      +.++..++.++...++..++. ..+.+.+
T Consensus       156 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          156 LDIRNSYELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998888776 4444443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.77  E-value=3.2e-17  Score=112.67  Aligned_cols=125  Identities=15%  Similarity=0.219  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA  219 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  219 (265)
                      +..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            56678888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHH--HHHhCCccccccc
Q 024618          220 NQGMYEESVRYYVRALAMNPKADNAWQYLRIS--LRYAGRYPNRGDI  264 (265)
Q Consensus       220 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~  264 (265)
                      ..|++++|+.+++++++.+|++..++..++.+  +...|++++|++.
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~  139 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  139 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            88888888888888888888888777554444  7777888877654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=3e-17  Score=107.69  Aligned_cols=117  Identities=14%  Similarity=0.045  Sum_probs=99.2

Q ss_pred             ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024618           73 TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL  152 (265)
Q Consensus        73 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  152 (265)
                      ..+..+..+|..+...|++++|+                               ..|+++++.+|+++.++..+|.++..
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~-------------------------------~~~~~al~~~p~~~~~~~~~a~~~~~   50 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAV-------------------------------KAYTEMIKRAPEDARGYSNRAAALAK   50 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHH-------------------------------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHH-------------------------------HHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            34556666676666666665555                               45555555677789999999999999


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC------CcchhhHHHHHHHHHh
Q 024618          153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLK------PNYVRAWANMGISYAN  220 (265)
Q Consensus       153 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~  220 (265)
                      .|++++|+..++++++++|+++.++..+|.++...|++++|+..|+++++.+      |.+..++..++.+...
T Consensus        51 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           51 LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999      8888888888877654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=3.8e-17  Score=110.13  Aligned_cols=120  Identities=16%  Similarity=0.106  Sum_probs=113.0

Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH
Q 024618          135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW  211 (265)
Q Consensus       135 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  211 (265)
                      ..|.+...+..+|..+...|++++|+..|+++++..|++   ..++..+|.++...|++++|+..+++++..+|.++.++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            357788999999999999999999999999999999987   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618          212 ANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       212 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  254 (265)
                      +.+|.++...|++++|+.+|+++++++|++..++..++.+...
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999888877543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.75  E-value=2.4e-17  Score=109.97  Aligned_cols=104  Identities=13%  Similarity=-0.019  Sum_probs=98.1

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCC-------ChH-----HHHHHHHHHhhcCcHHHHHHHHHHHHhc------
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPE-------NSE-----GWRLLGIAHAENDDDQQAIAAMMRAHEA------   70 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~------   70 (265)
                      .++..|..++..|+|++|+..|+++++.+|+       +..     +|.++|.++..+|++++|+..+++++++      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            3578899999999999999999999999999       444     9999999999999999999999999999      


Q ss_pred             -CCChHHHH----hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc
Q 024618           71 -EPTNLEVL----LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA  112 (265)
Q Consensus        71 -~~~~~~~~----~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  112 (265)
                       +|+++.+|    +++|.++..+|++++|+..|++++++.|++....
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~  139 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET  139 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence             99999999    9999999999999999999999999999987766

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.75  E-value=7.8e-17  Score=106.50  Aligned_cols=122  Identities=19%  Similarity=0.190  Sum_probs=106.0

Q ss_pred             CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024618           71 EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLY  150 (265)
Q Consensus        71 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  150 (265)
                      .|.++..+..+|.++...|++++|+..++                               +++..+|.+..++..+|.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-------------------------------~al~~~~~~~~~~~~la~~~   60 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYT-------------------------------EAIKRNPKDAKLYSNRAACY   60 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHH-------------------------------HHHTTCTTCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHH-------------------------------HHHHcCCCcHHHHHHHHHHH
Confidence            35566777778877777777666665554                               55555677789999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCC
Q 024618          151 NLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM  223 (265)
Q Consensus       151 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  223 (265)
                      ...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|.+..++..++.++..+|+
T Consensus        61 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           61 TKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988774

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.74  E-value=7.9e-17  Score=106.04  Aligned_cols=116  Identities=16%  Similarity=0.097  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---hhhHHHHH
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY---SLWNKLGATQANSVQSADAILAYQRALDLKPNY---VRAWANMG  215 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~  215 (265)
                      .++.+|..+...|++++|+..++++++.+|+++   .+++.+|.++...|++++|+..|++++...|++   +.+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            467889999999999999999999999999988   799999999999999999999999999999998   78899999


Q ss_pred             HHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618          216 ISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR  257 (265)
Q Consensus       216 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  257 (265)
                      .++..+|++++|+..|+++++..|+++.+......+-...++
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            999999999999999999999999988777666655544443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.74  E-value=3.1e-17  Score=105.01  Aligned_cols=107  Identities=19%  Similarity=0.263  Sum_probs=101.9

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc--chhhHHH
Q 024618          136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN--YVRAWAN  213 (265)
Q Consensus       136 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~  213 (265)
                      +|++..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|.  ++.++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            57788889999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHhc-CCcHHHHHHHHHHHhcCCCCc
Q 024618          214 MGISYANQ-GMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       214 l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~  242 (265)
                      +|.++... |++++|++++++++...|.++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999999 999999999999999998764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.74  E-value=4.6e-17  Score=107.21  Aligned_cols=119  Identities=16%  Similarity=0.260  Sum_probs=110.5

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-------hhhH
Q 024618          139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY-------VRAW  211 (265)
Q Consensus       139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~  211 (265)
                      .+..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+       +.++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999998877       8899


Q ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCc
Q 024618          212 ANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY  258 (265)
Q Consensus       212 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  258 (265)
                      ..+|.++...|++++|+.+|+++++..| ++..+..++.+...+++.
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998 588888898888776554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.74  E-value=5e-17  Score=120.64  Aligned_cols=181  Identities=11%  Similarity=-0.050  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC--ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618           26 AVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP--TNLEVLLSLGVSHTNELEQAAALKYLYGWLR  103 (265)
Q Consensus        26 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  103 (265)
                      |+..+++.+...+.+..++..+|.++...|++++|+..+.+.+..+|  .+.+++..++.++..+|+.+.|.+.++++.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            67778887776666677788999999999999999999999999987  8899999999999999999999999999999


Q ss_pred             cCCC-----CCCCc----hhhhhhhh--chHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-
Q 024618          104 HHPK-----YGTIA----PPELSDSL--YYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTALKL-  169 (265)
Q Consensus       104 ~~~~-----~~~~~----~~~~~~~~--~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-  169 (265)
                      .+|+     +....    +++....|  ++.+|...|+++....|+  .+..++.   ++..+|++++|...++.+++. 
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence            9883     33322    54455555  899999999999988887  2333333   899999999999999988776 


Q ss_pred             ---------CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH
Q 024618          170 ---------KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW  211 (265)
Q Consensus       170 ---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  211 (265)
                               +|+++.++.+++.+....|+  +|.++++++.+..|+++.+.
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence                     48899999999999999998  89999999999999997654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.74  E-value=1e-16  Score=110.16  Aligned_cols=118  Identities=19%  Similarity=0.223  Sum_probs=100.5

Q ss_pred             CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024618           71 EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLY  150 (265)
Q Consensus        71 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  150 (265)
                      .+.++..+..+|.++...|++++|+..|+                               ++++.+|+++.++..+|.++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~-------------------------------~al~~~p~~~~~~~~l~~~~   55 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYT-------------------------------QALSIAPANPIYLSNRAAAY   55 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHH-------------------------------HHHHHSTTCHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHH-------------------------------HHHHhCCcCHHHHHHHHHHH
Confidence            34456777778888777777766665554                               55555677899999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618          151 NLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA  219 (265)
Q Consensus       151 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  219 (265)
                      ...|++++|+..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++...+....
T Consensus        56 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A           56 SASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT  124 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999987777665543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.73  E-value=7.5e-16  Score=127.23  Aligned_cols=221  Identities=10%  Similarity=0.051  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHH-HHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 024618           24 SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAI-AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWL  102 (265)
Q Consensus        24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  102 (265)
                      +.....|++++...|..+..|+..+......|+.++|. ..|++++...|.+...+..++......|+++.|...|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            44668899999999999999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             hcC-----------CCC-----------CCCc---hhhhhhhhchHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcc-C
Q 024618          103 RHH-----------PKY-----------GTIA---PPELSDSLYYADVARLFVEAARM-SPEDADVHIVLGVLYNLSR-Q  155 (265)
Q Consensus       103 ~~~-----------~~~-----------~~~~---~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-~  155 (265)
                      ...           |..           ...+   +......|..+.|..+|.++++. .+....++...+.+....+ +
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence            752           421           1122   55666778899999999999987 4445677777777777765 4


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC---cchhhHHHHHHHHHhcCCcHHHHHHHH
Q 024618          156 YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP---NYVRAWANMGISYANQGMYEESVRYYV  232 (265)
Q Consensus       156 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~  232 (265)
                      .+.|..+|+++++..|+++..|...+......|+.+.|...|++++...|   ....+|..........|+.+.+....+
T Consensus       486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~  565 (679)
T 4e6h_A          486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK  565 (679)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999887   356788888888899999999999999


Q ss_pred             HHHhcCCCCchh
Q 024618          233 RALAMNPKADNA  244 (265)
Q Consensus       233 ~a~~~~~~~~~~  244 (265)
                      ++.+..|+++..
T Consensus       566 R~~~~~P~~~~~  577 (679)
T 4e6h_A          566 RFFEKFPEVNKL  577 (679)
T ss_dssp             HHHHHSTTCCHH
T ss_pred             HHHHhCCCCcHH
Confidence            999999987543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.73  E-value=3.5e-18  Score=136.28  Aligned_cols=167  Identities=13%  Similarity=0.077  Sum_probs=137.3

Q ss_pred             hcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHH
Q 024618           53 ENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEA  132 (265)
Q Consensus        53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  132 (265)
                      ..+++++|+..++.+++..|.....+..+|.++...|++++|+..|+++++..|.+.....         +.       .
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~---------~~-------~  309 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE---------KE-------S  309 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH---------HH-------H
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh---------HH-------H
Confidence            4556778888888888888888899999999999999999999999999998887654220         00       0


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHH
Q 024618          133 ARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA  212 (265)
Q Consensus       133 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  212 (265)
                      .+..+....++.++|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++.
T Consensus       310 ~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~  389 (457)
T 1kt0_A          310 KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL  389 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            11223346789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcHHHHH-HHHHHH
Q 024618          213 NMGISYANQGMYEESVR-YYVRAL  235 (265)
Q Consensus       213 ~l~~~~~~~g~~~~A~~-~~~~a~  235 (265)
                      .++.++...|++++|.. .+++++
T Consensus       390 ~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          390 QISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988875 344433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.5e-16  Score=126.21  Aligned_cols=206  Identities=12%  Similarity=0.020  Sum_probs=164.4

Q ss_pred             CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChH-----------------HHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618            7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSE-----------------GWRLLGIAHAENDDDQQAIAAMMRAHE   69 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~~~~   69 (265)
                      +...+..|..+...|+|++|+..|.++++..|....                 ++..+|.+|...|++++|++++.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            455688999999999999999999999998876432                 578899999999999999999999988


Q ss_pred             cCCCh------HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHH
Q 024618           70 AEPTN------LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVH  143 (265)
Q Consensus        70 ~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  143 (265)
                      ..+..      ..+...++.++...|++++|+..+++++...+..                         ...+....++
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------~~~~~~~~~~  138 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE-------------------------KRVFLKHSLS  138 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS-------------------------SCCSSHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-------------------------CccHHHHHHH
Confidence            65442      2355667778888888888888887766542211                         1123346788


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-------hhh
Q 024618          144 IVLGVLYNLSRQYDKAIESFQTALKL------KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY-------VRA  210 (265)
Q Consensus       144 ~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~  210 (265)
                      ..+|.++...|++++|...+++++..      .+....++..+|.++...|++++|...+++++...+..       ...
T Consensus       139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  218 (434)
T 4b4t_Q          139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL  218 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence            89999999999999999999998875      22336789999999999999999999999998764321       345


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          211 WANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      +..+|.++...|++++|..+|.++++.
T Consensus       219 ~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          219 DLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            677889999999999999999999864

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.73  E-value=2.8e-18  Score=137.38  Aligned_cols=122  Identities=14%  Similarity=0.157  Sum_probs=79.6

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (265)
                      |..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            55666666777777777777777776666677777777777777777777777777666666666677777777777777


Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHH--HHhcCCcHHHHHHHHHH
Q 024618          193 AILAYQRALDLKPNYVRAWANMGIS--YANQGMYEESVRYYVRA  234 (265)
Q Consensus       193 A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~a  234 (265)
                      |+..|+++++.+|++..++..++.+  +...|++++|++.+++.
T Consensus        93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~  136 (477)
T 1wao_1           93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  136 (477)
T ss_dssp             HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            7777777766666666666666666  66666666666666553

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.73  E-value=1.9e-16  Score=104.16  Aligned_cols=123  Identities=18%  Similarity=0.253  Sum_probs=107.2

Q ss_pred             CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024618           71 EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLY  150 (265)
Q Consensus        71 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  150 (265)
                      +|.++..+..+|.++...|++++|+..+++                               ++...|.++.++..+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~a~~~   56 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGK-------------------------------AIELNPANAVYFCNRAAAY   56 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------HHHHCTTCHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHH-------------------------------HHHcCCCCHHHHHHHHHHH
Confidence            445667777788877777777666655554                               4455667788999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCc
Q 024618          151 NLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMY  224 (265)
Q Consensus       151 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  224 (265)
                      ...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++
T Consensus        57 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           57 SKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999876

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.72  E-value=1.7e-17  Score=132.86  Aligned_cols=135  Identities=13%  Similarity=0.091  Sum_probs=101.0

Q ss_pred             hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024618           74 NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLY  150 (265)
Q Consensus        74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  150 (265)
                      .+..+..+|.++...|++++|+..++++++.+|++...+   +.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   84 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   84 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            345667778888888888888888888888888776655   77778888888888888888888888888888888888


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHhhcCcHHHHHHHH-----------HHHhcCCcch
Q 024618          151 NLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT--QANSVQSADAILAYQ-----------RALDLKPNYV  208 (265)
Q Consensus       151 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~-----------~~~~~~~~~~  208 (265)
                      ...|++++|+..++++++.+|+++.++..++.+  +...|++++|++.++           +++...|+..
T Consensus        85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1           85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence            888888888888888888888887777777777  777788888888887           5555555543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.72  E-value=6.1e-17  Score=106.26  Aligned_cols=98  Identities=10%  Similarity=0.109  Sum_probs=83.5

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH-------HHHhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL-------EVLLSLG   82 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~la   82 (265)
                      +..+|..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|++.       .++..+|
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg   90 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG   90 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            346899999999999999999999999999999999999999999999999999999999887653       4677777


Q ss_pred             hhhhhhhhHHHHHHHHHHHHhcCCC
Q 024618           83 VSHTNELEQAAALKYLYGWLRHHPK  107 (265)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~~~~~~~  107 (265)
                      .++...|++++|+..|++++...|+
T Consensus        91 ~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           91 NAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            7777788888887777777776654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.72  E-value=2.1e-17  Score=126.80  Aligned_cols=156  Identities=11%  Similarity=0.087  Sum_probs=92.1

Q ss_pred             ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhh
Q 024618           40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDS  119 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (265)
                      ....+..+|..++..|++++|+..|++++...|++..        +...+++.++..                       
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~-----------------------  226 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMAL-----------------------  226 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHH-----------------------
Confidence            4556777888888888888888888888887776541        122333333321                       


Q ss_pred             hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHH
Q 024618          120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQR  199 (265)
Q Consensus       120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  199 (265)
                              .+.         ..++.++|.++...|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|++
T Consensus       227 --------~l~---------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~  289 (338)
T 2if4_A          227 --------AVK---------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK  289 (338)
T ss_dssp             --------HHH---------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             --------HHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                    111         247899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcchhhHHHHHHH-HHhcCCcHHHHHHHHHHHhcCCCCch
Q 024618          200 ALDLKPNYVRAWANMGIS-YANQGMYEESVRYYVRALAMNPKADN  243 (265)
Q Consensus       200 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~  243 (265)
                      +++++|+++.++..++.+ ....+..+++...|.+++...|+++.
T Consensus       290 al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          290 AQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             TTC------------------------------------------
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            999999999999999988 44567788899999999999988653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.71  E-value=2e-17  Score=107.13  Aligned_cols=108  Identities=17%  Similarity=0.164  Sum_probs=76.6

Q ss_pred             ccCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHH
Q 024618          153 SRQYDKAIESFQTALKL---KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVR  229 (265)
Q Consensus       153 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  229 (265)
                      .|++++|+..|+++++.   +|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            56777777777777777   466677777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCCCCchhHHHHHHHHHHhCCccc
Q 024618          230 YYVRALAMNPKADNAWQYLRISLRYAGRYPN  260 (265)
Q Consensus       230 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  260 (265)
                      .++++++..|+++........+....+..++
T Consensus        83 ~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~  113 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQSYKQAILFYADKLDE  113 (117)
T ss_dssp             HHHHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777666655555555555544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.71  E-value=1.3e-16  Score=113.39  Aligned_cols=101  Identities=16%  Similarity=0.172  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-----
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKL---KPQD----YSLWNKLGATQANSVQSADAILAYQRALDLKPNY-----  207 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----  207 (265)
                      ..++..+|.++...|++++|+..+++++..   .+++    ..++..+|.++...|++++|+..+++++...+..     
T Consensus        66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  145 (203)
T 3gw4_A           66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA  145 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence            455666677777777777777777777665   3322    3456777777777777777777777777543211     


Q ss_pred             -hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          208 -VRAWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       208 -~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                       ..++..+|.++...|++++|+.++++++++...
T Consensus       146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence             234567788888888888888888887776443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.71  E-value=6.3e-17  Score=107.67  Aligned_cols=92  Identities=21%  Similarity=0.242  Sum_probs=62.6

Q ss_pred             hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH----------HHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024618          116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYD----------KAIESFQTALKLKPQDYSLWNKLGATQA  185 (265)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~~  185 (265)
                      ..+.+.+++|+..++++++++|+++.++..+|.++...++++          +|+..|+++++++|+++.+|+++|.+|.
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            345667777888888888888888888887887777776653          6666677777666766666666776666


Q ss_pred             hhc-----------CcHHHHHHHHHHHhcCCcc
Q 024618          186 NSV-----------QSADAILAYQRALDLKPNY  207 (265)
Q Consensus       186 ~~~-----------~~~~A~~~~~~~~~~~~~~  207 (265)
                      .+|           ++++|+.+|+++++++|++
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            654           4555555555555555554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.70  E-value=1.8e-15  Score=98.58  Aligned_cols=114  Identities=31%  Similarity=0.456  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhh
Q 024618           41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL  120 (265)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (265)
                      ..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++.                 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----------------   71 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-----------------   71 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----------------
Confidence            345555555555555555555555555555555555555555544444444444433332222                 


Q ss_pred             chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024618          121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQA  185 (265)
Q Consensus       121 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  185 (265)
                                    ..|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus        72 --------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           72 --------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             --------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             --------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence                          223334444445555555555555555555555555555544444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.70  E-value=9.9e-17  Score=106.74  Aligned_cols=93  Identities=19%  Similarity=0.158  Sum_probs=80.2

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcH----------HHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618           16 ELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDD----------QQAIAAMMRAHEAEPTNLEVLLSLGVSH   85 (265)
Q Consensus        16 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~   85 (265)
                      ..-+.+.|++|+..++++++.+|+++++|..+|.++...+++          ++|+..|+++++++|++..+++.+|.+|
T Consensus        11 ~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay   90 (158)
T 1zu2_A           11 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   90 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            445678899999999999999999999999999999998875          5999999999999999999999999999


Q ss_pred             hhhh-----------hHHHHHHHHHHHHhcCCCC
Q 024618           86 TNEL-----------EQAAALKYLYGWLRHHPKY  108 (265)
Q Consensus        86 ~~~~-----------~~~~A~~~~~~~~~~~~~~  108 (265)
                      ...|           ++++|+.+|+++++++|++
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            9886           5666666666666666554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.70  E-value=5.1e-16  Score=103.24  Aligned_cols=105  Identities=18%  Similarity=0.134  Sum_probs=55.0

Q ss_pred             CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 024618           37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL  116 (265)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  116 (265)
                      +|.++..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++             
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------------   71 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-------------   71 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------
Confidence            3445555666666666666666666666666665555555555555555555554444433333222             


Q ss_pred             hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024618          117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ  172 (265)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  172 (265)
                                        .+|+++.++..+|.++...|++++|+..+++++...|+
T Consensus        72 ------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           72 ------------------LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             ------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ------------------hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence                              23334455555555555555555555555555555444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.70  E-value=1e-16  Score=124.27  Aligned_cols=124  Identities=15%  Similarity=0.212  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALK----------------LKPQDYSLWNKLGATQANSVQSADAILAYQRALDL  203 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  203 (265)
                      ...+..+|..+...|++++|+..|+++++                ..|.++.++.++|.++..+|++++|+..++++++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            45688999999999999999999999998                67778899999999999999999999999999999


Q ss_pred             CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618          204 KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       204 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++.+++.+
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988877653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.69  E-value=2.5e-16  Score=108.02  Aligned_cols=129  Identities=13%  Similarity=0.050  Sum_probs=108.7

Q ss_pred             hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhc--------CCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q 024618           74 NLEVLLSLGVSHTNELEQAAALKYLYGWLRH--------HPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIV  145 (265)
Q Consensus        74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  145 (265)
                      .+..+...|..++..|++++|+..|.+++..        .|.++                     .....+|....++..
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~n   68 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEP---------------------EWVELDRKNIPLYAN   68 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSH---------------------HHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHH---------------------HHHHHHHHHHHHHHH
Confidence            4567888999999999999999999888876        22211                     011235677889999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch-hhHHHHHHHHHhcCC
Q 024618          146 LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV-RAWANMGISYANQGM  223 (265)
Q Consensus       146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~  223 (265)
                      +|.++...|++++|+..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....++
T Consensus        69 la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A           69 MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998 667777777665543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.68  E-value=1.8e-16  Score=112.63  Aligned_cols=148  Identities=14%  Similarity=0.125  Sum_probs=118.9

Q ss_pred             hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhhcCc
Q 024618          117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL------KPQDYSLWNKLGATQANSVQS  190 (265)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~  190 (265)
                      ...|++++|.+.++......+....++..+|.++...|++++|+..+++++..      .|....++..+|.++...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            35677777777554444433366889999999999999999999999999984      344567899999999999999


Q ss_pred             HHHHHHHHHHHhc---CC----cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHhCC
Q 024618          191 ADAILAYQRALDL---KP----NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA------DNAWQYLRISLRYAGR  257 (265)
Q Consensus       191 ~~A~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~  257 (265)
                      ++|+..+++++..   .+    ....++..+|.++...|++++|+.+++++++..+..      ..++..+|.++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            9999999999987   33    235678899999999999999999999999764322      2346789999999999


Q ss_pred             ccccccc
Q 024618          258 YPNRGDI  264 (265)
Q Consensus       258 ~~~A~~~  264 (265)
                      +++|.+.
T Consensus       163 ~~~A~~~  169 (203)
T 3gw4_A          163 LLEAQQH  169 (203)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.68  E-value=2.3e-15  Score=97.03  Aligned_cols=98  Identities=17%  Similarity=0.151  Sum_probs=86.2

Q ss_pred             chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618          121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA  200 (265)
Q Consensus       121 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  200 (265)
                      ++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..++++
T Consensus        19 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   98 (118)
T 1elw_A           19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEG   98 (118)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            33444455555555677789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcchhhHHHHHHHH
Q 024618          201 LDLKPNYVRAWANMGISY  218 (265)
Q Consensus       201 ~~~~~~~~~~~~~l~~~~  218 (265)
                      ++.+|+++.++..++.+.
T Consensus        99 ~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           99 LKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HTTCTTCHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHhh
Confidence            999999999998888765

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.68  E-value=1.7e-15  Score=96.82  Aligned_cols=104  Identities=15%  Similarity=0.074  Sum_probs=98.7

Q ss_pred             CCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC--hHHHHhhhhh
Q 024618            6 GHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT--NLEVLLSLGV   83 (265)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~   83 (265)
                      ....++.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+++++++..|.  ++.++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             hhhhh-hhHHHHHHHHHHHHhcCCCCC
Q 024618           84 SHTNE-LEQAAALKYLYGWLRHHPKYG  109 (265)
Q Consensus        84 ~~~~~-~~~~~A~~~~~~~~~~~~~~~  109 (265)
                      ++... |++++|+.++++++...|..+
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999 999999999999999988764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.67  E-value=1.2e-15  Score=100.32  Aligned_cols=101  Identities=19%  Similarity=0.128  Sum_probs=93.9

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCCh---HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENS---EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSL   81 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l   81 (265)
                      ..++.+|..++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..++++++.+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3568899999999999999999999999999988   799999999999999999999999999999998   8899999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKY  108 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~  108 (265)
                      |.++...|++++|+..++++++..|++
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            999999999999998888888877764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.67  E-value=1.1e-16  Score=122.85  Aligned_cols=127  Identities=15%  Similarity=0.161  Sum_probs=93.7

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618          138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY-----------------SLWNKLGATQANSVQSADAILAYQRA  200 (265)
Q Consensus       138 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~~  200 (265)
                      .....+..+|..+...|++++|+..|++++...|.+.                 .++.++|.++..+|++++|+..|+++
T Consensus       177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3466788999999999999999999999999999876                 48999999999999999999999999


Q ss_pred             HhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH-hCCccccccc
Q 024618          201 LDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY-AGRYPNRGDI  264 (265)
Q Consensus       201 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~  264 (265)
                      ++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+... .+..+++...
T Consensus       257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~  321 (338)
T 2if4_A          257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM  321 (338)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988544 4445555443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=6.6e-15  Score=99.01  Aligned_cols=116  Identities=16%  Similarity=0.070  Sum_probs=64.9

Q ss_pred             CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCch
Q 024618           37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAP  113 (265)
Q Consensus        37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  113 (265)
                      .|.+...+..+|..+...|++++|+..|+++++..|++   ..++..+|.++...|++++|+..++++++          
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----------   93 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE----------   93 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh----------
Confidence            45566677777777777777777777777777777765   45555555555555544444433333222          


Q ss_pred             hhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024618          114 PELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT  183 (265)
Q Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  183 (265)
                                           .+|+++.++..+|.++...|++++|+..+++++..+|+++.++..++.+
T Consensus        94 ---------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A           94 ---------------------KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             ---------------------HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             ---------------------hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence                                 2333444555555555555555555555555555555555554444443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.66  E-value=2.3e-16  Score=102.03  Aligned_cols=95  Identities=13%  Similarity=0.050  Sum_probs=84.7

Q ss_pred             hhhchHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHH
Q 024618          118 DSLYYADVARLFVEAARM---SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI  194 (265)
Q Consensus       118 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  194 (265)
                      ..|++++|+..|+++++.   +|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            357788888889999988   58888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcchhhHH
Q 024618          195 LAYQRALDLKPNYVRAWA  212 (265)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~  212 (265)
                      ..+++++...|+++.+..
T Consensus        82 ~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHH
Confidence            999999999999877654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.5e-15  Score=120.54  Aligned_cols=210  Identities=10%  Similarity=-0.005  Sum_probs=149.3

Q ss_pred             hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhh
Q 024618           41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL  120 (265)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (265)
                      |.+....|..+...|++++|++.|.++++..|.........+......+..++|+..+              +.++...|
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l--------------~~~y~~~~   69 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILEL--------------GQLYVTMG   69 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHH--------------HHHHHHHT
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHH--------------HHHHHHCC
Confidence            4566777888999999999999999999998876544333333333333333332211              23334444


Q ss_pred             chHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhhc
Q 024618          121 YYADVARLFVEAARMSPED------ADVHIVLGVLYNLSRQYDKAIESFQTALKLKP------QDYSLWNKLGATQANSV  188 (265)
Q Consensus       121 ~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~  188 (265)
                      ++++|.+.+.+++...+..      ..+...++.++...|++++|+..+++++...+      ....++..+|.++...|
T Consensus        70 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  149 (434)
T 4b4t_Q           70 AKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK  149 (434)
T ss_dssp             CHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc
Confidence            4444444444444332221      23556678888889999999999999987532      23678899999999999


Q ss_pred             CcHHHHHHHHHHHhc------CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHHh
Q 024618          189 QSADAILAYQRALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA-------DNAWQYLRISLRYA  255 (265)
Q Consensus       189 ~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~  255 (265)
                      ++++|+..+++++..      .+....++..+|.+|...|++++|...+++++...+..       ...+..+|..+...
T Consensus       150 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (434)
T 4b4t_Q          150 QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCED  229 (434)
T ss_dssp             CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSS
T ss_pred             ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHH
Confidence            999999999998865      33446789999999999999999999999998864332       24556677888888


Q ss_pred             CCccccccc
Q 024618          256 GRYPNRGDI  264 (265)
Q Consensus       256 ~~~~~A~~~  264 (265)
                      |++++|...
T Consensus       230 ~~y~~A~~~  238 (434)
T 4b4t_Q          230 KDYKTAFSY  238 (434)
T ss_dssp             SCHHHHHHH
T ss_pred             HhHHHHHHH
Confidence            888887654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.62  E-value=5e-15  Score=94.60  Aligned_cols=91  Identities=12%  Similarity=0.174  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC------chhHHH
Q 024618          174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA------DNAWQY  247 (265)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~  247 (265)
                      +..+..+|.++...|++++|+..|++++..+|.++.++.++|.++..+|++++|+..++++++++|++      ..++..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            45566677777777777777777777777777777777777777777777777777777777777766      666667


Q ss_pred             HHHHHHHhCCccccccc
Q 024618          248 LRISLRYAGRYPNRGDI  264 (265)
Q Consensus       248 l~~~~~~~~~~~~A~~~  264 (265)
                      +|.++..+|++++|++.
T Consensus        84 ~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHHhHhhhHhH
Confidence            77777777777666654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.62  E-value=1.6e-14  Score=119.35  Aligned_cols=207  Identities=9%  Similarity=-0.006  Sum_probs=178.3

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHH-HHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHH
Q 024618           57 DQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL-KYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEA  132 (265)
Q Consensus        57 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~  132 (265)
                      .+.....|++++...|.++.+|+..+......|+.++|. ..|++++...|.+..++   +......|++++|..+|+++
T Consensus       325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            345678899999999999999999999999999999997 99999999999887655   77778889999999999999


Q ss_pred             Hhc-----------CCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhhc-
Q 024618          133 ARM-----------SPE-----------DADVHIVLGVLYNLSRQYDKAIESFQTALKL-KPQDYSLWNKLGATQANSV-  188 (265)
Q Consensus       133 ~~~-----------~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-  188 (265)
                      +..           .|.           ...+|...+.+..+.|+.+.|...|.++++. .+....+|...+.+....+ 
T Consensus       405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~  484 (679)
T 4e6h_A          405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK  484 (679)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence            875           253           3457888899999999999999999999987 4555778887787777665 


Q ss_pred             CcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHhCCcccccc
Q 024618          189 QSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK---ADNAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       189 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      +.+.|...|+++++..|+++..|...+......|+.+.|...|++++...|+   ....|......-...|+.+.+..
T Consensus       485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~  562 (679)
T 4e6h_A          485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT  562 (679)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4999999999999999999999999999999999999999999999998883   45778888888888888776543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.62  E-value=9e-15  Score=96.07  Aligned_cols=125  Identities=14%  Similarity=0.075  Sum_probs=99.3

Q ss_pred             ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhh
Q 024618           40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDS  119 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (265)
                      .+..+..+|.++...|++++|+.+++++++.+|.++.++..+|.++...|++++|+..+++++...|.....        
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------   74 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--------   74 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--------
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh--------
Confidence            456788899999999999999999999999999999999999999999999888888887777664432100        


Q ss_pred             hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC
Q 024618          120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ  189 (265)
Q Consensus       120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  189 (265)
                                      .+..+.++..+|.++...|++++|+..++++++..| ++..+..++.+....++
T Consensus        75 ----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           75 ----------------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence                            000166788899999999999999999999999888 57888888877665543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.61  E-value=6.1e-15  Score=114.26  Aligned_cols=141  Identities=14%  Similarity=0.107  Sum_probs=118.1

Q ss_pred             HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 024618           75 LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR  154 (265)
Q Consensus        75 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  154 (265)
                      ...+..+|..+...|++++|+..|+++++..+..+               .....+.....+|.+..++..+|.++...|
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~nla~~~~~~g  287 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR---------------AAAEDADGAKLQPVALSCVLNIGACKLKMS  287 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---------------HHSCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc---------------cccChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            35577788888888888888888887776433210               111123333467778899999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHH
Q 024618          155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRY  230 (265)
Q Consensus       155 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  230 (265)
                      ++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++++++...
T Consensus       288 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          288 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988887653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.58  E-value=7.3e-15  Score=100.19  Aligned_cols=100  Identities=20%  Similarity=0.199  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc------ch
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQSADAILAYQRALDLKPN------YV  208 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~  208 (265)
                      .++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+..+++++...+.      ..
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  129 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG  129 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence            466777888888888888888888877764432      456778888888888888888888888766322      24


Q ss_pred             hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          209 RAWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      .++..+|.++...|++++|+.++++++++...
T Consensus       130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          130 RACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            56778889999999999999999888876543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.56  E-value=1.5e-14  Score=98.67  Aligned_cols=140  Identities=18%  Similarity=0.118  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH------HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchh
Q 024618           41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL------EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPP  114 (265)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  114 (265)
                      ..++..+|.++...|++++|+.+++++++..+...      .++..+|.++...|++++|+.++++++...+....    
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----   84 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----   84 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----
Confidence            34677889999999999999999999888755432      47888899999999998888888877765332110    


Q ss_pred             hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhhc
Q 024618          115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ------DYSLWNKLGATQANSV  188 (265)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~  188 (265)
                                           .+....++..+|.++...|++++|+..+++++...+.      .+.++..+|.++...|
T Consensus        85 ---------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g  143 (164)
T 3ro3_A           85 ---------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG  143 (164)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             ---------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc
Confidence                                 0112467888999999999999999999999876332      2467889999999999


Q ss_pred             CcHHHHHHHHHHHhcCC
Q 024618          189 QSADAILAYQRALDLKP  205 (265)
Q Consensus       189 ~~~~A~~~~~~~~~~~~  205 (265)
                      ++++|+..++++++...
T Consensus       144 ~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          144 NHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             CHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999987644

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.56  E-value=2.6e-14  Score=91.93  Aligned_cols=81  Identities=21%  Similarity=0.321  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC
Q 024618          125 VARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLK  204 (265)
Q Consensus       125 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  204 (265)
                      |+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|++++...
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   83 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555544


Q ss_pred             C
Q 024618          205 P  205 (265)
Q Consensus       205 ~  205 (265)
                      |
T Consensus        84 ~   84 (115)
T 2kat_A           84 Q   84 (115)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.55  E-value=6.9e-12  Score=100.74  Aligned_cols=251  Identities=7%  Similarity=-0.101  Sum_probs=184.6

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCc-HHHHHHHHHHHHhc---CCChHHHHhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDD-DQQAIAAMMRAHEA---EPTNLEVLLSLGVSH   85 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~---~~~~~~~~~~la~~~   85 (265)
                      .+..+...+-.|+++.+..+|++++...| +.+.|..........++ .+.....|+.++..   +|.+..+|......+
T Consensus        17 vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~   95 (493)
T 2uy1_A           17 IMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEE   95 (493)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence            45666666777999999999999999888 78888877776666553 35566778888764   677778888777665


Q ss_pred             h----hhhhHHHHHHHHHHHHhcCCCCC-CCc----h-------------------------------------------
Q 024618           86 T----NELEQAAALKYLYGWLRHHPKYG-TIA----P-------------------------------------------  113 (265)
Q Consensus        86 ~----~~~~~~~A~~~~~~~~~~~~~~~-~~~----~-------------------------------------------  113 (265)
                      .    ..++.+.+...|++++.. |... ..+    .                                           
T Consensus        96 ~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~  174 (493)
T 2uy1_A           96 GKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN  174 (493)
T ss_dssp             SSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred             HhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHH
Confidence            4    457888888999999884 4321 000    0                                           


Q ss_pred             ---hhhhhhhc---------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024618          114 ---PELSDSLY---------YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG  181 (265)
Q Consensus       114 ---~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  181 (265)
                         .+-...++         .......|++++...|..+.+|...+..+...|+.++|...|++++.. |.+...|...+
T Consensus       175 W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~  253 (493)
T 2uy1_A          175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYG  253 (493)
T ss_dssp             HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHH
T ss_pred             HHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence               00000111         234567899999999999999999999999999999999999999999 98865554433


Q ss_pred             HH----------------------------------------HHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618          182 AT----------------------------------------QANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ  221 (265)
Q Consensus       182 ~~----------------------------------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  221 (265)
                      ..                                        ....++.+.|...|+++ ...+....+|...+.+....
T Consensus       254 ~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~  332 (493)
T 2uy1_A          254 LVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYA  332 (493)
T ss_dssp             HHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHH
T ss_pred             hhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHH
Confidence            32                                        22467788899999999 43333456777777777766


Q ss_pred             C-CcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          222 G-MYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       222 g-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      + +.+.|...|+.+++..|+.+..+...+......|+.+.|..+
T Consensus       333 ~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l  376 (493)
T 2uy1_A          333 TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARAL  376 (493)
T ss_dssp             HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6 599999999999999999888888888888888888877654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.55  E-value=6e-15  Score=94.21  Aligned_cols=95  Identities=12%  Similarity=0.084  Sum_probs=88.3

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc------hhhHH
Q 024618          139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY------VRAWA  212 (265)
Q Consensus       139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~  212 (265)
                      +...+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            367889999999999999999999999999999999999999999999999999999999999999998      88899


Q ss_pred             HHHHHHHhcCCcHHHHHHHHH
Q 024618          213 NMGISYANQGMYEESVRYYVR  233 (265)
Q Consensus       213 ~l~~~~~~~g~~~~A~~~~~~  233 (265)
                      .+|.++...|+++.|+..+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999988888766654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.53  E-value=8.5e-14  Score=85.40  Aligned_cols=82  Identities=35%  Similarity=0.602  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024618          174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLR  253 (265)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  253 (265)
                      +.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555554


Q ss_pred             Hh
Q 024618          254 YA  255 (265)
Q Consensus       254 ~~  255 (265)
                      .+
T Consensus        89 ~~   90 (91)
T 1na3_A           89 KQ   90 (91)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.51  E-value=3.2e-13  Score=86.76  Aligned_cols=101  Identities=25%  Similarity=0.311  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618          157 DKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       157 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      ++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC--chhHHHHHHHHHHhCC
Q 024618          237 MNPKA--DNAWQYLRISLRYAGR  257 (265)
Q Consensus       237 ~~~~~--~~~~~~l~~~~~~~~~  257 (265)
                      +.|..  ......+...+..+++
T Consensus        82 ~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           82 AAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHhcc
Confidence            98853  4555566666665544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.51  E-value=2.7e-13  Score=83.11  Aligned_cols=85  Identities=36%  Similarity=0.550  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 024618          138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS  217 (265)
Q Consensus       138 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  217 (265)
                      .+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcC
Q 024618          218 YANQG  222 (265)
Q Consensus       218 ~~~~g  222 (265)
                      +...|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            88765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.47  E-value=2.5e-13  Score=84.82  Aligned_cols=93  Identities=22%  Similarity=0.215  Sum_probs=84.3

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChH-HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSE-GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      .+.+|..++..|++++|+..++++++.+|+++. +++.+|.++...|++++|+..|+++++.+|+++.++..        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            578899999999999999999999999999999 99999999999999999999999999999999888744        


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCC
Q 024618           89 LEQAAALKYLYGWLRHHPKYGT  110 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~  110 (265)
                      +.+.+++..|+++...+|+++.
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCSS
T ss_pred             HHHHHHHHHHHHHhccCccccc
Confidence            7788888888888887776543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.47  E-value=4.2e-13  Score=83.93  Aligned_cols=70  Identities=14%  Similarity=0.350  Sum_probs=37.3

Q ss_pred             CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618          170 KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       170 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  239 (265)
                      +|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++++.|
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            3555555555555555555555555555555555555555555555555555555555555555555443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.44  E-value=2.5e-13  Score=84.79  Aligned_cols=91  Identities=14%  Similarity=0.186  Sum_probs=76.6

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC
Q 024618          144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDYS-LWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG  222 (265)
Q Consensus       144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  222 (265)
                      +..|..+...|++++|+..++++++.+|+++. ++..+|.++...|++++|+..|+++++.+|+++.++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            46788888889999999999999999999888 99999999999999999999999999999988877644        5


Q ss_pred             CcHHHHHHHHHHHhcCCCCc
Q 024618          223 MYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       223 ~~~~A~~~~~~a~~~~~~~~  242 (265)
                      .+.+++..|+++...+|+++
T Consensus        76 ~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHhccCcccc
Confidence            67788888888887777654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.44  E-value=7.1e-12  Score=83.12  Aligned_cols=121  Identities=17%  Similarity=0.143  Sum_probs=100.3

Q ss_pred             hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHH
Q 024618          119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN----SVQSADAI  194 (265)
Q Consensus       119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~  194 (265)
                      .+++++|+.+|+++.+..+...  .  +|.+|...+..++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            3567778888888887764433  3  899999889999999999999886  788999999999998    89999999


Q ss_pred             HHHHHHHhcCCcchhhHHHHHHHHHh----cCCcHHHHHHHHHHHhcCCCCchhHHHHH
Q 024618          195 LAYQRALDLKPNYVRAWANMGISYAN----QGMYEESVRYYVRALAMNPKADNAWQYLR  249 (265)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~l~  249 (265)
                      .+|+++.+.  .++.+.+.+|.+|..    .+++++|+.+|+++.+..  ++.+...|+
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            999999876  568899999999999    899999999999999873  455555444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.42  E-value=2.3e-12  Score=80.51  Aligned_cols=87  Identities=15%  Similarity=0.184  Sum_probs=73.1

Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch--hhHH
Q 024618          135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV--RAWA  212 (265)
Q Consensus       135 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~  212 (265)
                      .+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|...  ....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999876543  3333


Q ss_pred             HHHHHHHhc
Q 024618          213 NMGISYANQ  221 (265)
Q Consensus       213 ~l~~~~~~~  221 (265)
                      .+..++...
T Consensus        82 ~l~~~l~~~   90 (100)
T 3ma5_A           82 ELQDAKLKA   90 (100)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            444444333

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.35  E-value=2.3e-10  Score=86.66  Aligned_cols=156  Identities=12%  Similarity=0.012  Sum_probs=105.9

Q ss_pred             HHHHHhCCCChHHHH--HHHHHHhhcC---cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcC
Q 024618           31 EAEVLKNPENSEGWR--LLGIAHAEND---DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHH  105 (265)
Q Consensus        31 ~~~~~~~~~~~~~~~--~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  105 (265)
                      +++....|.++.+|-  ..|..++..+   +..+|+.+|+++++++|+++.++..++.++.......             
T Consensus       184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~-------------  250 (372)
T 3ly7_A          184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH-------------  250 (372)
T ss_dssp             HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS-------------
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-------------
Confidence            345556777777653  4566666544   4589999999999999999999998888886221110             


Q ss_pred             CCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024618          106 PKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQA  185 (265)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  185 (265)
                      |...       ........+... ...+..+|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++.
T Consensus       251 ~~~~-------~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~  321 (372)
T 3ly7_A          251 PLDE-------KQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE  321 (372)
T ss_dssp             CCCH-------HHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred             CCch-------hhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence            0000       000001122221 1233456777888888888777778888888888888888764 667778888888


Q ss_pred             hhcCcHHHHHHHHHHHhcCCcch
Q 024618          186 NSVQSADAILAYQRALDLKPNYV  208 (265)
Q Consensus       186 ~~~~~~~A~~~~~~~~~~~~~~~  208 (265)
                      ..|++++|++.|++++.++|..+
T Consensus       322 ~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          322 MKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HCCCHHHHHHHHHHHHhcCCCcC
Confidence            88888888888888888888764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.34  E-value=8e-11  Score=85.62  Aligned_cols=108  Identities=18%  Similarity=0.130  Sum_probs=88.3

Q ss_pred             hcCCCCHHHHHHHHHHHHH-----cc------CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhh-----cCcHHHHH
Q 024618          134 RMSPEDADVHIVLGVLYNL-----SR------QYDKAIESFQTALKLKPQ--DYSLWNKLGATQANS-----VQSADAIL  195 (265)
Q Consensus       134 ~~~~~~~~~~~~l~~~~~~-----~~------~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----~~~~~A~~  195 (265)
                      +.+|++++.++..|.+...     .|      ....|...++++++++|+  +..+|..+|.+|...     |+.++|.+
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~  225 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT  225 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence            4567788877777765532     12      356888899999999998  567999999999884     89999999


Q ss_pred             HHHHHHhcCCcc-hhhHHHHHHHHHh-cCCcHHHHHHHHHHHhcCCCC
Q 024618          196 AYQRALDLKPNY-VRAWANMGISYAN-QGMYEESVRYYVRALAMNPKA  241 (265)
Q Consensus       196 ~~~~~~~~~~~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~  241 (265)
                      +|+++++++|+. ..+++.+|..+.. .|++++|..++++++..+|..
T Consensus       226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            999999999975 8999999998887 489999999999999987763

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.32  E-value=1e-10  Score=77.45  Aligned_cols=120  Identities=19%  Similarity=0.217  Sum_probs=92.8

Q ss_pred             CcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHh
Q 024618           55 DDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAAR  134 (265)
Q Consensus        55 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  134 (265)
                      +++++|+.+|+++.+..+....    +|.+|...+..++|+.+|+++                               .+
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~A-------------------------------a~   53 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKA-------------------------------CE   53 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHH-------------------------------HH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHH-------------------------------Hc
Confidence            4677788888888776543333    777777666666565555544                               44


Q ss_pred             cCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHHHHHHHHHhcCCc
Q 024618          135 MSPEDADVHIVLGVLYNL----SRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN----SVQSADAILAYQRALDLKPN  206 (265)
Q Consensus       135 ~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~  206 (265)
                      .  .++.+.+.+|.+|..    .+++++|+.+|+++.+.  .++.+.+.+|.+|..    .+++++|+.+|+++.+... 
T Consensus        54 ~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-  128 (138)
T 1klx_A           54 L--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS-  128 (138)
T ss_dssp             T--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-
T ss_pred             C--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC-
Confidence            3  568999999999998    89999999999999986  789999999999999    8999999999999998743 


Q ss_pred             chhhHHHHH
Q 024618          207 YVRAWANMG  215 (265)
Q Consensus       207 ~~~~~~~l~  215 (265)
                       +.+...++
T Consensus       129 -~~A~~~l~  136 (138)
T 1klx_A          129 -EDACGILN  136 (138)
T ss_dssp             -HHHHHHC-
T ss_pred             -HHHHHHHh
Confidence             44554444

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.30  E-value=1.3e-11  Score=98.45  Aligned_cols=122  Identities=11%  Similarity=0.036  Sum_probs=100.1

Q ss_pred             hhhhhchHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCC---HHHHHH
Q 024618          116 LSDSLYYADVARLFVEAARM-----SPED---ADVHIVLGVLYNLSRQYDKAIESFQTALKL-----KPQD---YSLWNK  179 (265)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~  179 (265)
                      +..+|++++|+..+++++++     .|++   ..++.++|.+|..+|+|++|+.++++++.+     .|++   ...+.+
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            55778899999999988875     3444   467888999999999999999999999875     4455   456889


Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHhc-----CCcch---hhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618          180 LGATQANSVQSADAILAYQRALDL-----KPNYV---RAWANMGISYANQGMYEESVRYYVRALAM  237 (265)
Q Consensus       180 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  237 (265)
                      +|.+|..+|++++|+..+++++.+     .|+++   .....++.++..++.+++|...|.++.+.
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999875     45544   55678999999999999999999888664

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.30  E-value=1.8e-09  Score=86.77  Aligned_cols=203  Identities=13%  Similarity=0.010  Sum_probs=150.5

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618           24 SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR  103 (265)
Q Consensus        24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  103 (265)
                      +.....|++++...|..+..|...+..+...|+.++|...+++++.. |.+...+...+.... .++.   ...+.....
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e-~~~~---~~~l~~~~~  270 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMD-EEAV---YGDLKRKYS  270 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT-CTHH---HHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc-hhHH---HHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999 998777765554421 1111   111111110


Q ss_pred             cCC---------C-CCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhh
Q 024618          104 HHP---------K-YGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR-QYDKAIESFQTALKL  169 (265)
Q Consensus       104 ~~~---------~-~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~  169 (265)
                      ...         . ....+   +......+..+.|...|+++ ...+....++...|.+....+ +.+.|...|+.+++.
T Consensus       271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~  349 (493)
T 2uy1_A          271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK  349 (493)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence            010         0 00111   44445577789999999999 433345667777777666666 699999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618          170 KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       170 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      .|+++..|...+......|+.+.|...|+++    +.....|......-...|+.+.+...+++++.
T Consensus       350 ~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          350 HPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999888888888888899999999999987    34567777777777888999888888888875

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.30  E-value=1e-10  Score=88.55  Aligned_cols=121  Identities=16%  Similarity=0.209  Sum_probs=96.0

Q ss_pred             chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH----HHHHH----HHHH--HHhhCCCCHHHHHHHHHHHHhhcCc
Q 024618          121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQY----DKAIE----SFQT--ALKLKPQDYSLWNKLGATQANSVQS  190 (265)
Q Consensus       121 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~----~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~  190 (265)
                      ...+|+.+|+++++++|+...++..++.++.....+    .....    .+..  ++..+|.++.++..++..+...|++
T Consensus       214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~  293 (372)
T 3ly7_A          214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKT  293 (372)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence            356788888888888888888888777776522111    11111    1221  2245789999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618          191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       191 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  242 (265)
                      ++|+..+++++.++|+ ..++..+|.++...|++++|++.|.+|+.++|..+
T Consensus       294 d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          294 DESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            9999999999999975 67788999999999999999999999999999864

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.25  E-value=1.1e-11  Score=99.06  Aligned_cols=118  Identities=12%  Similarity=0.005  Sum_probs=98.0

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhc-----CCc---chhh
Q 024618          147 GVLYNLSRQYDKAIESFQTALKL-----KPQD---YSLWNKLGATQANSVQSADAILAYQRALDL-----KPN---YVRA  210 (265)
Q Consensus       147 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~---~~~~  210 (265)
                      +..+..+|++++|+..+++++++     .|++   ..++.++|.+|..+|++++|+.++++++..     .|+   ....
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  395 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA  395 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            44567899999999999999976     3444   467889999999999999999999999976     344   4567


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhc-----CCCCch---hHHHHHHHHHHhCCccccccc
Q 024618          211 WANMGISYANQGMYEESVRYYVRALAM-----NPKADN---AWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~---~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      +.++|.+|..+|++++|+.++++++++     .|+++.   ....++.++..++.+++|...
T Consensus       396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~  457 (490)
T 3n71_A          396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFM  457 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999974     677764   456788888888888877653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.24  E-value=2.1e-10  Score=70.06  Aligned_cols=71  Identities=15%  Similarity=0.098  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHHHHHhhcC---cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618          170 KPQDYSLWNKLGATQANSVQ---SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       170 ~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  240 (265)
                      +|+++.++..+|.++...++   .++|...++++++.+|+++.+++.+|..+++.|+|++|+.+|+++++.+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35556666666666554443   466666666666666666666666666666666666666666666666655

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.20  E-value=3.8e-10  Score=74.32  Aligned_cols=92  Identities=14%  Similarity=0.065  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc---CcHHHHHHHHHHHhcC-C-cchhhHHHHHHHHHhcCCcHHHHHHH
Q 024618          157 DKAIESFQTALKLKPQDYSLWNKLGATQANSV---QSADAILAYQRALDLK-P-NYVRAWANMGISYANQGMYEESVRYY  231 (265)
Q Consensus       157 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~  231 (265)
                      ..+.+.|.+.+..+|.+.++.+.+|.++.+.+   +.++++..++.+++.+ | ...+.++++|..+.++|+|++|+.++
T Consensus        15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            44555566666666666677777777776665   4556777777777666 5 44666777777777777777777777


Q ss_pred             HHHHhcCCCCchhHHHH
Q 024618          232 VRALAMNPKADNAWQYL  248 (265)
Q Consensus       232 ~~a~~~~~~~~~~~~~l  248 (265)
                      +++++++|++..+....
T Consensus        95 ~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           95 RGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHCTTCHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHH
Confidence            77777777766655443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.19  E-value=4.4e-10  Score=68.62  Aligned_cols=73  Identities=15%  Similarity=0.102  Sum_probs=68.2

Q ss_pred             CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch
Q 024618          136 SPEDADVHIVLGVLYNLSRQ---YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV  208 (265)
Q Consensus       136 ~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  208 (265)
                      +|+++.++..+|.+++..++   .++|...++++++.+|+++.++..+|..++..|+|++|+.+|+++++.+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            68899999999999986666   79999999999999999999999999999999999999999999999999843

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.11  E-value=1.3e-09  Score=71.80  Aligned_cols=98  Identities=10%  Similarity=-0.008  Sum_probs=85.1

Q ss_pred             hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHhhcCcHHHH
Q 024618          120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR---QYDKAIESFQTALKLK-P-QDYSLWNKLGATQANSVQSADAI  194 (265)
Q Consensus       120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~  194 (265)
                      .....+.+.|.+.+..+|.+..+.+.+|.++.+.+   +.++++..++.+++.+ | ...++++.+|..+.+.|+|++|+
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            44566777888888888889999999999999988   6779999999999998 6 56899999999999999999999


Q ss_pred             HHHHHHHhcCCcchhhHHHHHHH
Q 024618          195 LAYQRALDLKPNYVRAWANMGIS  217 (265)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~l~~~  217 (265)
                      ++++++++.+|++..+....-.+
T Consensus        92 ~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHH
Confidence            99999999999997776554433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.07  E-value=1.6e-09  Score=67.90  Aligned_cols=76  Identities=16%  Similarity=0.134  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC-------CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618          174 YSLWNKLGATQANSVQSADAILAYQRALDLK-------PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ  246 (265)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  246 (265)
                      +.-.+.+|..++..|+|..|+..|+++++..       +..+.++..+|.++.++|++++|+.++++++++.|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            3444555555555555555555555555431       223455566666666666666666666666666666665555


Q ss_pred             HHH
Q 024618          247 YLR  249 (265)
Q Consensus       247 ~l~  249 (265)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.05  E-value=1.4e-08  Score=74.09  Aligned_cols=89  Identities=17%  Similarity=0.132  Sum_probs=80.3

Q ss_pred             hhchHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHh-hcC
Q 024618          119 SLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLS-----RQYDKAIESFQTALKLKPQD-YSLWNKLGATQAN-SVQ  189 (265)
Q Consensus       119 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~  189 (265)
                      .+....|...++++++++|+  +..++..+|.+|...     |+.++|..+|+++++++|+. ..+++..|..+.. .|+
T Consensus       176 l~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          176 PDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            34457888899999999999  677999999999995     99999999999999999975 9999999999988 599


Q ss_pred             cHHHHHHHHHHHhcCCcc
Q 024618          190 SADAILAYQRALDLKPNY  207 (265)
Q Consensus       190 ~~~A~~~~~~~~~~~~~~  207 (265)
                      +++|.+.+++++..+|..
T Consensus       256 ~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          256 RAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHHcCCCCC
Confidence            999999999999998874

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.01  E-value=1.8e-09  Score=84.87  Aligned_cols=94  Identities=9%  Similarity=0.031  Sum_probs=79.6

Q ss_pred             HccCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHhhcCcHHHHHHHHHHHhc-----CCc---chhhHHHHH
Q 024618          152 LSRQYDKAIESFQTALKL-----KPQDY---SLWNKLGATQANSVQSADAILAYQRALDL-----KPN---YVRAWANMG  215 (265)
Q Consensus       152 ~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~---~~~~~~~l~  215 (265)
                      ..|++++|+..+++++++     .|+++   .++.++|.+|..+|++++|+.++++++..     .|+   -...+.++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            468899999999999985     45554   56889999999999999999999999976     344   456789999


Q ss_pred             HHHHhcCCcHHHHHHHHHHHhc-----CCCCchhH
Q 024618          216 ISYANQGMYEESVRYYVRALAM-----NPKADNAW  245 (265)
Q Consensus       216 ~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~  245 (265)
                      .+|..+|++++|+.++++++++     .|+++.+.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            9999999999999999999875     67776543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.98  E-value=6.5e-09  Score=81.90  Aligned_cols=109  Identities=9%  Similarity=0.023  Sum_probs=87.8

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhc-----CCcc---hhh
Q 024618          147 GVLYNLSRQYDKAIESFQTALKL-----KPQD---YSLWNKLGATQANSVQSADAILAYQRALDL-----KPNY---VRA  210 (265)
Q Consensus       147 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~  210 (265)
                      ..-+...|++++|+..+++++++     .|++   ..++.++|.+|..+|++++|+.++++++..     .|++   ...
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            34456789999999999999975     3444   467889999999999999999999999975     3444   467


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhc-----CCCCchh---HHHHHHHHHHh
Q 024618          211 WANMGISYANQGMYEESVRYYVRALAM-----NPKADNA---WQYLRISLRYA  255 (265)
Q Consensus       211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~---~~~l~~~~~~~  255 (265)
                      +.++|.+|..+|++++|+.++++++++     .|+++.+   ..+|+.+...+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999875     6777644   45566666544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.95  E-value=1.5e-08  Score=63.35  Aligned_cols=77  Identities=21%  Similarity=0.192  Sum_probs=68.3

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH
Q 024618          139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLK-------PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW  211 (265)
Q Consensus       139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  211 (265)
                      ++.-.+.+|..++..|+|..|+..|+++++..       +..+.++..+|.++.++|++++|+..+++++...|+++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            35567899999999999999999999999863       34578899999999999999999999999999999998888


Q ss_pred             HHHH
Q 024618          212 ANMG  215 (265)
Q Consensus       212 ~~l~  215 (265)
                      .+++
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            7776

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.89  E-value=1.5e-06  Score=69.96  Aligned_cols=186  Identities=7%  Similarity=-0.086  Sum_probs=127.6

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHhcC-CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhc
Q 024618           43 GWRLLGIAHAENDDDQQAIAAMMRAHEAE-PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY  121 (265)
Q Consensus        43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (265)
                      .+..+-..+.+.|+.++|+++|+++.+.. +.+..++..+-.++...+...                      .....+.
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~----------------------~~~~~~~   85 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAAT----------------------ESSPNPG   85 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCS----------------------SSSCCHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchh----------------------hhhhcch
Confidence            34555677889999999999999988753 124444544444433222100                      0112334


Q ss_pred             hHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhhcCcHHHHHHHH
Q 024618          122 YADVARLFVEAARM--SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK-PQDYSLWNKLGATQANSVQSADAILAYQ  198 (265)
Q Consensus       122 ~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~  198 (265)
                      .++|.++|+++...  .| +..++..+...+.+.|++++|...++++.+.. +.+..+|..+...+.+.|+.++|.+.|+
T Consensus        86 l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence            45566666665543  24 47788888899999999999999999887752 2357788888889999999999999999


Q ss_pred             HHHhcCC-cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc--CCCCchhHHHHHHHH
Q 024618          199 RALDLKP-NYVRAWANMGISYANQGMYEESVRYYVRALAM--NPKADNAWQYLRISL  252 (265)
Q Consensus       199 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~  252 (265)
                      +..+..- .+...|..+...+.+.|+.++|.+.+++..+.  .|+ ..++..+...+
T Consensus       165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F  220 (501)
T 4g26_A          165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF  220 (501)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence            8876532 23577888889999999999999999988764  444 33444444333

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.87  E-value=1.2e-08  Score=80.37  Aligned_cols=93  Identities=12%  Similarity=0.078  Sum_probs=77.8

Q ss_pred             hhhchHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---HHHHHHH
Q 024618          118 DSLYYADVARLFVEAARM-----SPEDA---DVHIVLGVLYNLSRQYDKAIESFQTALKL-----KPQDY---SLWNKLG  181 (265)
Q Consensus       118 ~~~~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~  181 (265)
                      ..|++++|+..+++++.+     .|+++   .++.++|.+|..+|+|++|+.++++++.+     .|++|   ..+.++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            356789999999999875     45554   56889999999999999999999999975     44554   5689999


Q ss_pred             HHHHhhcCcHHHHHHHHHHHhc-----CCcchhh
Q 024618          182 ATQANSVQSADAILAYQRALDL-----KPNYVRA  210 (265)
Q Consensus       182 ~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~  210 (265)
                      .+|..+|++++|+..+++++++     .|+++.+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            9999999999999999999976     5666544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.84  E-value=1.1e-08  Score=80.49  Aligned_cols=106  Identities=12%  Similarity=-0.051  Sum_probs=84.7

Q ss_pred             hhhhhhchHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---HHHH
Q 024618          115 ELSDSLYYADVARLFVEAARM-----SPEDA---DVHIVLGVLYNLSRQYDKAIESFQTALKL-----KPQDY---SLWN  178 (265)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~  178 (265)
                      .+...|++++|+..+++++..     .|+++   .++.++|.+|..+|+|++|+.++++++.+     .|++|   ..++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            345678899999999999975     34554   67889999999999999999999999975     34554   5688


Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHhc-----CCcchh---hHHHHHHHHHh
Q 024618          179 KLGATQANSVQSADAILAYQRALDL-----KPNYVR---AWANMGISYAN  220 (265)
Q Consensus       179 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~---~~~~l~~~~~~  220 (265)
                      ++|.+|..+|++++|+..+++++++     .|+++.   +..+++.+...
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999975     555553   44556665543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.84  E-value=3.4e-06  Score=67.98  Aligned_cols=160  Identities=11%  Similarity=-0.025  Sum_probs=120.0

Q ss_pred             hHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHhhc---------CcHHHHHHHHHHHHhcC-CChHHHHhhhh
Q 024618           14 GQELFRKGLLSEAVLALEAEVLKN-PENSEGWRLLGIAHAEN---------DDDQQAIAAMMRAHEAE-PTNLEVLLSLG   82 (265)
Q Consensus        14 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~-~~~~~~~~~la   82 (265)
                      -..+.+.|+.++|+.+|+++.+.. +.+...+..+-.++...         +..++|.++|++..... +.+..++..+.
T Consensus        33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI  112 (501)
T 4g26_A           33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA  112 (501)
T ss_dssp             HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            455668999999999999998765 23566666666666543         34788999999887753 23667788888


Q ss_pred             hhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 024618           83 VSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIES  162 (265)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  162 (265)
                      ..+.+.|+.++|...+++..+..                             ..| +...+..+...+.+.|+.++|.+.
T Consensus       113 ~~~~~~g~~~~A~~l~~~M~~~g-----------------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l  162 (501)
T 4g26_A          113 RLAVAKDDPEMAFDMVKQMKAFG-----------------------------IQP-RLRSYGPALFGFCRKGDADKAYEV  162 (501)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHTT-----------------------------CCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcC-----------------------------CCC-ccceehHHHHHHHHCCCHHHHHHH
Confidence            88888888888887777665432                             123 367788888888888999999999


Q ss_pred             HHHHHhhC-CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618          163 FQTALKLK-PQDYSLWNKLGATQANSVQSADAILAYQRALDL  203 (265)
Q Consensus       163 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  203 (265)
                      ++++.+.. ..+...+..+...+.+.|+.++|.+.+++..+.
T Consensus       163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            98887652 224667888888888999999999888887654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.77  E-value=2.4e-07  Score=58.80  Aligned_cols=96  Identities=15%  Similarity=0.104  Sum_probs=68.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH---HHHHHHHHHhcC-C-cchhhHHHHHHHHHhcCCcHHHHH
Q 024618          155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD---AILAYQRALDLK-P-NYVRAWANMGISYANQGMYEESVR  229 (265)
Q Consensus       155 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~  229 (265)
                      ....+...|.+.+..++.+..+.+.+|.++.+..+...   ++..++..+..+ | ...+.++.+|..+++.|+|++|+.
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            34455566666666667777778888887777666555   777777777765 4 345677788888888888888888


Q ss_pred             HHHHHHhcCCCCchhHHHHHH
Q 024618          230 YYVRALAMNPKADNAWQYLRI  250 (265)
Q Consensus       230 ~~~~a~~~~~~~~~~~~~l~~  250 (265)
                      +++.+++..|++..+......
T Consensus        96 ~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           96 YVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHH
Confidence            888888888887766554433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.72  E-value=1.4e-06  Score=56.58  Aligned_cols=121  Identities=12%  Similarity=0.074  Sum_probs=97.9

Q ss_pred             cCCCCHHHHHHHHHHHHHccCH------HHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618          135 MSPEDADVHIVLGVLYNLSRQY------DKAIESFQTALKLKPQD--------YSLWNKLGATQANSVQSADAILAYQRA  200 (265)
Q Consensus       135 ~~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~  200 (265)
                      ..|++++.|..........|+.      ++-++.|++++..-|..        ...|...+.. ...++.++|...|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            5799999999999999999999      89999999999876653        3456666655 5669999999999999


Q ss_pred             HhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618          201 LDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR  257 (265)
Q Consensus       201 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  257 (265)
                      +......+.+|...|....++|+...|.+.+.+++.+.|...+.+ ..+..-.+.|.
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l-e~a~~nl~~~~  142 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML-EIALRNLNLQK  142 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH-HHHHHHHHTTC
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH-HHHHHhhhcCC
Confidence            988777889999999999999999999999999999998854443 34444444443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.62  E-value=8e-07  Score=56.40  Aligned_cols=96  Identities=10%  Similarity=0.013  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHhhcCcHHHHHH
Q 024618          122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDK---AIESFQTALKLK-P-QDYSLWNKLGATQANSVQSADAILA  196 (265)
Q Consensus       122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~  196 (265)
                      ...+...|.+....++....+.+.+|.++....+...   ++..++..+... | ..-+.++.+|..+++.|+|++|.++
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            4455666777777777789999999999999887776   999999988876 4 4568899999999999999999999


Q ss_pred             HHHHHhcCCcchhhHHHHHHH
Q 024618          197 YQRALDLKPNYVRAWANMGIS  217 (265)
Q Consensus       197 ~~~~~~~~~~~~~~~~~l~~~  217 (265)
                      ++.+++..|++..+......+
T Consensus        97 ~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           97 VRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHH
Confidence            999999999998776554433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.59  E-value=5e-07  Score=59.93  Aligned_cols=99  Identities=17%  Similarity=0.131  Sum_probs=74.0

Q ss_pred             CCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHhhcCcHHHHHHHHHHHHhcC--
Q 024618            3 PYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENS---------EGWRLLGIAHAENDDDQQAIAAMMRAHEAE--   71 (265)
Q Consensus         3 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--   71 (265)
                      |..+...++.....++..|.|+.|+.....++....+++         .++..+|.+++..++|.+|...|+++++..  
T Consensus        16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~   95 (167)
T 3ffl_A           16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA   95 (167)
T ss_dssp             -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            445556678899999999999999999998776543333         378889999999999999999999987641  


Q ss_pred             -CC----------------------hHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 024618           72 -PT----------------------NLEVLLSLGVSHTNELEQAAALKYLYGW  101 (265)
Q Consensus        72 -~~----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~  101 (265)
                       +.                      +.++.+.++.|+...+++++|+..++.+
T Consensus        96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             C--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence             11                      1257777888888888888888776553

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.37  E-value=2.4e-05  Score=50.91  Aligned_cols=68  Identities=12%  Similarity=0.037  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR  209 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  209 (265)
                      .+|...|.. ...++.++|.+.|+.++......+.+|...|..-..+|+...|.+.+.+++.+.|....
T Consensus        62 ~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           62 RIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             HHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            445555544 45588888888888888777777788888888888888888888888888888877543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.37  E-value=4.5e-06  Score=55.41  Aligned_cols=45  Identities=4%  Similarity=-0.057  Sum_probs=32.6

Q ss_pred             chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 024618          207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISL  252 (265)
Q Consensus       207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  252 (265)
                      +.++.+.++.|+...|++++|+..++..-.. ...+.+...||.+|
T Consensus       121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence            3478888999999999999999988764222 23466666677665

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.20  E-value=0.00013  Score=47.09  Aligned_cols=74  Identities=8%  Similarity=-0.027  Sum_probs=41.4

Q ss_pred             CHHHHHHHHHHHHhhcCc---HHHHHHHHHHHhcCCc-chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618          173 DYSLWNKLGATQANSVQS---ADAILAYQRALDLKPN-YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ  246 (265)
Q Consensus       173 ~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  246 (265)
                      ++.+.++++.++.+..+.   .+++..++..+...|. ..+.++.+|..++++|+|++|..+.+..++..|++..+..
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            455555555555554332   3455555555555552 3455556666666666666666666666666666654443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.14  E-value=6.1e-05  Score=47.96  Aligned_cols=71  Identities=7%  Similarity=-0.128  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHccCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh
Q 024618          140 ADVHIVLGVLYNLSRQY---DKAIESFQTALKLKPQ-DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRA  210 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  210 (265)
                      +.+.+.+|.++.+..+.   .+++..++..++..|. .-+.++.+|..+.+.|+|++|.++.+.+++..|++..+
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            34455555555444332   2344455554444442 23444455555555555555555555555555554443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.14  E-value=8.1e-06  Score=51.96  Aligned_cols=73  Identities=11%  Similarity=0.108  Sum_probs=47.2

Q ss_pred             ChHHHHHHHHHHhhcCc---HHHHHHHHHHHHhcCCC-hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc
Q 024618           40 NSEGWRLLGIAHAENDD---DQQAIAAMMRAHEAEPT-NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA  112 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  112 (265)
                      .+.+.+.+|.++.+..+   ..+++..++..++.+|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            45666666666665553   34566677776666663 356677777777777777777777777777777665443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.05  E-value=0.00032  Score=45.30  Aligned_cols=80  Identities=8%  Similarity=-0.125  Sum_probs=67.2

Q ss_pred             CCCHHHHHHHHHHHHHccCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHH
Q 024618          137 PEDADVHIVLGVLYNLSRQY---DKAIESFQTALKLKPQ-DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA  212 (265)
Q Consensus       137 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  212 (265)
                      +-.+.+.+.+|.++....+.   .+++..++..+...|. .-+.++.+|..+.+.|+|++|.++.+.+++..|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            44588999999999887754   5799999999998884 4688999999999999999999999999999999977655


Q ss_pred             HHHH
Q 024618          213 NMGI  216 (265)
Q Consensus       213 ~l~~  216 (265)
                      ....
T Consensus       116 Lk~~  119 (144)
T 1y8m_A          116 LKSM  119 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.68  E-value=0.00044  Score=57.98  Aligned_cols=115  Identities=12%  Similarity=0.051  Sum_probs=81.1

Q ss_pred             hhc-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--H-ccCHHHHHHHHHHHHhh--------CCCC----------HHH
Q 024618          119 SLY-YADVARLFVEAARMSPEDADVHIVLGVLYN--L-SRQYDKAIESFQTALKL--------KPQD----------YSL  176 (265)
Q Consensus       119 ~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~-~~~~~~A~~~~~~~~~~--------~~~~----------~~~  176 (265)
                      .++ ++.|+..+++....+|..... +..+.+..  . ..+--+|+..+.+.++.        .+.+          ...
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            444 577888888888888865432 22222221  1 22344677777776642        2222          234


Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618          177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA  234 (265)
Q Consensus       177 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  234 (265)
                      +..-+..+...|+++-|+..-++++...|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            5555677778899999999999999999999999999999999999999999887765

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.68  E-value=0.005  Score=51.79  Aligned_cols=123  Identities=12%  Similarity=0.141  Sum_probs=80.6

Q ss_pred             hcCc-HHHHHHHHHHHHhcCCChHHHHhhhhhh---hhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHH
Q 024618           53 ENDD-DQQAIAAMMRAHEAEPTNLEVLLSLGVS---HTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARL  128 (265)
Q Consensus        53 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  128 (265)
                      ..++ ++.|+..+++..+.+|.....+ ..+.+   .....+--+|+..+.+.++.                        
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~------------------------  314 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDP------------------------  314 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHH------------------------
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHH------------------------
Confidence            3444 6889999999999888654322 22221   11223344555555444421                        


Q ss_pred             HHHHH-hcCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHH
Q 024618          129 FVEAA-RMSPE----------DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAY  197 (265)
Q Consensus       129 ~~~~~-~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  197 (265)
                      +...+ ...+.          ....+...+..+...|+++-|+.+.++++...|.....|..|+.+|..+|+++.|+-.+
T Consensus       315 ~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL  394 (754)
T 4gns_B          315 LLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI  394 (754)
T ss_dssp             HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence            11111 11111          12355566777888899999999999999999999999999999999999999998877


Q ss_pred             HHH
Q 024618          198 QRA  200 (265)
Q Consensus       198 ~~~  200 (265)
                      +.+
T Consensus       395 NSc  397 (754)
T 4gns_B          395 NSM  397 (754)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.63  E-value=0.0031  Score=53.90  Aligned_cols=128  Identities=13%  Similarity=-0.021  Sum_probs=77.4

Q ss_pred             hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHhh
Q 024618          116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK--------LKPQDYSLWNKLGATQANS  187 (265)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~  187 (265)
                      ....|++++|.+..+     ..++...|..+|..+...++++.|+.+|.++-.        ....+...+..++......
T Consensus       662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~  736 (814)
T 3mkq_A          662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT  736 (814)
T ss_dssp             HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence            344555555555532     335678899999999999999999999988622        1234445555666666666


Q ss_pred             cCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHhCCcc
Q 024618          188 VQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA---DNAWQYLRISLRYAGRYP  259 (265)
Q Consensus       188 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~  259 (265)
                      |++..|...|.+.        .-......+|.+.+++++|+...++   ..|..   +......+.-+...|+.+
T Consensus       737 ~~~~~A~~~~~~~--------g~~~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~  800 (814)
T 3mkq_A          737 GKFNLAFNAYWIA--------GDIQGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKNT  800 (814)
T ss_dssp             TCHHHHHHHHHHH--------TCHHHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             CchHHHHHHHHHc--------CCHHHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccchh
Confidence            6666666555432        0111234456666677776665554   34443   244555666666777643

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=97.56  E-value=0.0059  Score=50.37  Aligned_cols=80  Identities=9%  Similarity=-0.128  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618          156 YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL  235 (265)
Q Consensus       156 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  235 (265)
                      ..++...+.+.....+ +......++......|+++.|...|...-......+...+.+|.++...|+.++|...|+++.
T Consensus       268 ~~~~~~~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          268 TDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             CHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhccccCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            3445555555443322 222222333334455777777777765443323345556667777777777777777777766


Q ss_pred             h
Q 024618          236 A  236 (265)
Q Consensus       236 ~  236 (265)
                      .
T Consensus       347 ~  347 (618)
T 1qsa_A          347 Q  347 (618)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.52  E-value=0.0043  Score=48.03  Aligned_cols=171  Identities=12%  Similarity=0.019  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhc
Q 024618           42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY  121 (265)
Q Consensus        42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (265)
                      .+.+.+|..|...|+.++-.+++......-+.-+.+               ++.+..+..+...+..+..          
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka---------------k~~k~v~~l~~~~~~~~~~----------   74 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA---------------KAAKLVRSLVDMFLDMDAG----------   74 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH---------------HHHHHHHHHHHHHTTSCCC----------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH---------------HHHHHHHHHHHHHhcCCCc----------
Confidence            577888999999999888888777654332221111               1222222333222221111          


Q ss_pred             hHHHHHHHHHHHhcCCCC--H----HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHhhcC
Q 024618          122 YADVARLFVEAARMSPED--A----DVHIVLGVLYNLSRQYDKAIESFQTALKLKP--QD----YSLWNKLGATQANSVQ  189 (265)
Q Consensus       122 ~~~a~~~~~~~~~~~~~~--~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~  189 (265)
                      .+.-++.+..+++...+.  .    .+-..+|.+|+..|+|.+|...+.+..+.-.  ++    .+++.....+|...++
T Consensus        75 ~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n  154 (394)
T 3txn_A           75 TGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSN  154 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Confidence            122223333333221111  1    1234678888888999998888888776321  11    3556666777888888


Q ss_pred             cHHHHHHHHHHHhcC---Ccc----hhhHHHHHHHHH-hcCCcHHHHHHHHHHHhc
Q 024618          190 SADAILAYQRALDLK---PNY----VRAWANMGISYA-NQGMYEESVRYYVRALAM  237 (265)
Q Consensus       190 ~~~A~~~~~~~~~~~---~~~----~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~  237 (265)
                      +.++...+.++....   +.+    +.....-|..+. ..++|.+|...|-.+++.
T Consensus       155 ~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          155 LPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            888888888876542   111    234455677788 788888888888887754

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.45  E-value=0.0057  Score=44.25  Aligned_cols=63  Identities=16%  Similarity=0.134  Sum_probs=48.4

Q ss_pred             hHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHH
Q 024618           14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE   76 (265)
Q Consensus        14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~   76 (265)
                      ...+++.|++++|+......++.+|.+......+...+.-.|++++|..-++.+.+++|....
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            345667788888888888888888888888777888888888888888888888888776543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.32  E-value=0.015  Score=38.80  Aligned_cols=92  Identities=13%  Similarity=0.048  Sum_probs=63.8

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHh--c--C-------------CC
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE--A--E-------------PT   73 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~--~-------------~~   73 (265)
                      +-.+..++-.|.|..++-.+.+.     +...+.+..+.||...+++.+|+.+++..+.  .  +             |.
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~  111 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG  111 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred             hhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence            44577777788888777665433     4456677778888888888888888888873  2  2             22


Q ss_pred             hH-HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCC
Q 024618           74 NL-EVLLSLGVSHTNELEQAAALKYLYGWLRHHPK  107 (265)
Q Consensus        74 ~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  107 (265)
                      +. -.+..+|.+....|+.++|+.++.......|-
T Consensus       112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A          112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence            22 24556777778888888888888777766553

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.29  E-value=0.017  Score=41.80  Aligned_cols=121  Identities=15%  Similarity=0.090  Sum_probs=85.4

Q ss_pred             hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHH
Q 024618          115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI  194 (265)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  194 (265)
                      .+...|..++++......++.+|.+......+..+++-.|+|+.|..-++.+.+++|.....-..+..+       -.|.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE   78 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAA   78 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHH
Confidence            356678889999999999999999999999999999999999999999999999999865432221111       1111


Q ss_pred             HHHHHHHhc--CC---cchhhH---HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618          195 LAYQRALDL--KP---NYVRAW---ANMGISYANQGMYEESVRYYVRALAMNPKAD  242 (265)
Q Consensus       195 ~~~~~~~~~--~~---~~~~~~---~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  242 (265)
                      ..=.+++.-  .|   ..+..|   ..-+......|+.++|...-.++++..|..+
T Consensus        79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~  134 (273)
T 1zbp_A           79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  134 (273)
T ss_dssp             HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence            111222211  11   122223   3345566678999999999999999877543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.25  E-value=0.038  Score=47.27  Aligned_cols=134  Identities=9%  Similarity=-0.019  Sum_probs=68.9

Q ss_pred             hhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHH
Q 024618           52 AENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVE  131 (265)
Q Consensus        52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  131 (265)
                      ...|++++|.+..+     ..+++..|..+|..+...++++.|+.+|.++                  ++++.+..++..
T Consensus       663 l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~------------------~d~~~l~~l~~~  719 (814)
T 3mkq_A          663 LKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA------------------HDLESLFLLHSS  719 (814)
T ss_dssp             HHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------TCHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc------------------cChhhhHHHHHH
Confidence            34555555554432     2245566666777777777777776666433                  233333333322


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---h
Q 024618          132 AARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY---V  208 (265)
Q Consensus       132 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~  208 (265)
                           ..+...+..++......|++..|...+.+.     .++   .....++...+++++|+..-++   ..|..   +
T Consensus       720 -----~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~~---~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~  783 (814)
T 3mkq_A          720 -----FNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GDI---QGAKDLLIKSQRFSEAAFLGST---YGLGDNEVN  783 (814)
T ss_dssp             -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TCH---HHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHH
T ss_pred             -----cCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CCH---HHHHHHHHHcCChHHHHHHHHH---hCCChHHHH
Confidence                 334555556666666677776666555442     111   1223445566666666665443   33333   2


Q ss_pred             hhHHHHHHHHHhcCCc
Q 024618          209 RAWANMGISYANQGMY  224 (265)
Q Consensus       209 ~~~~~l~~~~~~~g~~  224 (265)
                      .+....+.-+...|+.
T Consensus       784 ~~~~~~~~~L~~~~~~  799 (814)
T 3mkq_A          784 DIVTKWKENLILNGKN  799 (814)
T ss_dssp             HHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHHhccch
Confidence            3444455555555654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.12  E-value=0.0047  Score=49.46  Aligned_cols=77  Identities=19%  Similarity=0.263  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618          143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA  219 (265)
Q Consensus       143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  219 (265)
                      +..+|.+......++.|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...+.
T Consensus       155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            34455555555555566666666666666666666666666555555555665555555554444555555554443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.02  E-value=0.023  Score=44.19  Aligned_cols=60  Identities=10%  Similarity=0.112  Sum_probs=45.1

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618          177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA  236 (265)
Q Consensus       177 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  236 (265)
                      ...++..+...|++.+|+..+..++..+|-+..++..+..++...|+..+|+..|+++-+
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344556667778888888888888888888777888888888888888888887776543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.0087  Score=40.51  Aligned_cols=51  Identities=16%  Similarity=0.074  Sum_probs=44.2

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAH   68 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~   68 (265)
                      +-...+..|+++.|..+.+++     ++...|..+|......|+++-|..+|.++-
T Consensus        11 rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           11 RFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            344567889999999998876     678899999999999999999999999873

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.014  Score=46.08  Aligned_cols=100  Identities=15%  Similarity=0.071  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC--Ccch----hh
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ---DYSLWNKLGATQANSVQSADAILAYQRALDLK--PNYV----RA  210 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~----~~  210 (265)
                      ..++..+|..+...|++++|.+.|.++......   ..+.+..+..++...+++..+...+.++....  ..++    ..
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            457788999999999999999999998775332   25777888888889999999999999886542  1222    23


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618          211 WANMGISYANQGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  239 (265)
                      ....|.++...++|.+|...|-.++....
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            44567777888999999999888776543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.99  E-value=0.02  Score=49.71  Aligned_cols=96  Identities=10%  Similarity=-0.072  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC-CcchhhHHHHHH
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKL----KPQDYSLWNKLGATQANSVQSADAILAYQRALDLK-PNYVRAWANMGI  216 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  216 (265)
                      .+..+...+++.|+.++|...|.+..+.    ..-+..+|..+...+.+.|+.++|.+.|++..+.. ..+..+|..+-.
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~  208 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            4555666666666666666666554321    12345566666666666666666666666665432 122455555555


Q ss_pred             HHHhcCCc-HHHHHHHHHHHhc
Q 024618          217 SYANQGMY-EESVRYYVRALAM  237 (265)
Q Consensus       217 ~~~~~g~~-~~A~~~~~~a~~~  237 (265)
                      ++.+.|+. ++|.+.++++.+.
T Consensus       209 glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          209 CMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHc
Confidence            66666654 4566666666553

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.86  E-value=0.013  Score=47.05  Aligned_cols=74  Identities=11%  Similarity=0.013  Sum_probs=47.3

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN  186 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  186 (265)
                      |.+......+..|..+|.++..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++...+.+
T Consensus       159 GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            33333344456677777777777777777777777777777777777777777766655566666666655543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.83  E-value=0.018  Score=44.78  Aligned_cols=91  Identities=14%  Similarity=-0.022  Sum_probs=73.2

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCCC--------h--------------HHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPEN--------S--------------EGWRLLGIAHAENDDDQQAIAAMMRAHEA   70 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~--------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~   70 (265)
                      .|......|+.+.|...+.+++......        .              .+...++..+...|++.+++..+.+++..
T Consensus       121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~  200 (388)
T 2ff4_A          121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE  200 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3444556789999999999998865211        1              02334567788899999999999999999


Q ss_pred             CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618           71 EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR  103 (265)
Q Consensus        71 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  103 (265)
                      +|-+..++..+..++...|+..+|+..|+++..
T Consensus       201 ~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          201 HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999876643

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.056  Score=36.58  Aligned_cols=45  Identities=11%  Similarity=-0.201  Sum_probs=32.8

Q ss_pred             hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618          117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA  166 (265)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  166 (265)
                      ...|+++.|.+..+..     ++...|..+|......|+++-|..+|.++
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            3455666666665543     45778888888888888888888888775

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.79  E-value=0.12  Score=40.06  Aligned_cols=180  Identities=13%  Similarity=-0.004  Sum_probs=111.9

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHH-----HHHHHHHhh-cCcHHHHHHHHHHHHhcCCCh----HH--H
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGW-----RLLGIAHAE-NDDDQQAIAAMMRAHEAEPTN----LE--V   77 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~----~~--~   77 (265)
                      .+.+|..+...|+.++-..++......-+.-+.+.     ..+-..+.. .+..+.-++....+++...+.    ..  .
T Consensus        22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l  101 (394)
T 3txn_A           22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL  101 (394)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999998888877654433333322     222222222 344555566666666532222    11  3


Q ss_pred             HhhhhhhhhhhhhHHHHHHHHHHHHhcCCC--CCCCc-------hhhhhhhhchHHHHHHHHHHHhcC---CCCH----H
Q 024618           78 LLSLGVSHTNELEQAAALKYLYGWLRHHPK--YGTIA-------PPELSDSLYYADVARLFVEAARMS---PEDA----D  141 (265)
Q Consensus        78 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~  141 (265)
                      -..+|..|+..|++.+|+..+.+..+....  +....       ..++...+++.++...+.++....   +.++    .
T Consensus       102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~  181 (394)
T 3txn_A          102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA  181 (394)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence            447899999999999999988888774333  22111       667778888888888887775432   1223    3


Q ss_pred             HHHHHHHHHH-HccCHHHHHHHHHHHHhhCCCC--H---HHHHHHHHHHHhhcC
Q 024618          142 VHIVLGVLYN-LSRQYDKAIESFQTALKLKPQD--Y---SLWNKLGATQANSVQ  189 (265)
Q Consensus       142 ~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~--~---~~~~~l~~~~~~~~~  189 (265)
                      +...-|.++. ..++|.+|...|-+++......  +   .+...++.+-...++
T Consensus       182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence            4455577788 7899999999988887543322  1   233444555555554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.15  Score=40.51  Aligned_cols=60  Identities=10%  Similarity=-0.069  Sum_probs=36.4

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhC------CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKN------PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAE   71 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~   71 (265)
                      +..+..+ ..|+++.|+..+..+.+..      +....+...+..++...|+++...+.+....+..
T Consensus        21 ~~~~~~l-~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr   86 (445)
T 4b4t_P           21 FPKIDSL-AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH   86 (445)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHH-HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence            3445444 3478888988775554321      3345677778888999999988877776554443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.75  E-value=0.06  Score=36.00  Aligned_cols=204  Identities=16%  Similarity=0.123  Sum_probs=126.1

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHH
Q 024618           15 QELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAA   94 (265)
Q Consensus        15 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A   94 (265)
                      ...++-.+|+.++-+-.-+   .|..++....++.+++-.|.+..++-.+..     -+...+.+.-+.||....++..|
T Consensus        10 ~Ks~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA   81 (242)
T 3kae_A           10 CKSIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKA   81 (242)
T ss_dssp             HHHHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHH
Confidence            3445667888776543322   345557777889999999999999877653     35567777788999999999999


Q ss_pred             HHHHHHHHhcCCC-CCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024618           95 LKYLYGWLRHHPK-YGTIAPPELSDSLYYADVARLFVEAARMSPEDADV-HIVLGVLYNLSRQYDKAIESFQTALKLKPQ  172 (265)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  172 (265)
                      +..+++.+.-.-+ ++..-+.               -+.+-.+|.+.+. +..+|.++...|+.++|+.++.......|-
T Consensus        82 ~~~le~il~~kvd~d~~~d~~---------------~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A           82 IKSLESILEGKVERDPDVDAR---------------IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             HHHHHHHHTTCSBCCCCCCHH---------------HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHhcccccCcccccc---------------cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence            9999999953222 1111100               0111235666654 556788999999999999999998887765


Q ss_pred             CHHHHHHHHHH--H--------HhhcC-------cHHHH--------HHHHHHHhcCCcchh-hHHHHHHHHHhcCCcHH
Q 024618          173 DYSLWNKLGAT--Q--------ANSVQ-------SADAI--------LAYQRALDLKPNYVR-AWANMGISYANQGMYEE  226 (265)
Q Consensus       173 ~~~~~~~l~~~--~--------~~~~~-------~~~A~--------~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~  226 (265)
                      .+.+-..+-.-  .        ...|+       +....        ...++-.+.-|.-.. .....+..++.+|-.++
T Consensus       147 f~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~  226 (242)
T 3kae_A          147 FSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDK  226 (242)
T ss_dssp             HHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchh
Confidence            44332111000  0        00000       00011        112222223344322 23456778899999999


Q ss_pred             HHHHHHHHHhcCCCC
Q 024618          227 SVRYYVRALAMNPKA  241 (265)
Q Consensus       227 A~~~~~~a~~~~~~~  241 (265)
                      +..+|...-+.+|..
T Consensus       227 s~~lf~~lR~kDP~F  241 (242)
T 3kae_A          227 SKACFELVRRKDPMF  241 (242)
T ss_dssp             HHHHHHHHHHHSTTT
T ss_pred             HHHHHHHHHhcCCCc
Confidence            999999998888863

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.028  Score=44.96  Aligned_cols=145  Identities=14%  Similarity=0.058  Sum_probs=67.1

Q ss_pred             hhhhhhhchHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHccCHHHH----------HHHHHHHHhh---
Q 024618          114 PELSDSLYYADVARLFVEAAR-----------MSPEDADVHIVLGVLYNLSRQYDKA----------IESFQTALKL---  169 (265)
Q Consensus       114 ~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A----------~~~~~~~~~~---  169 (265)
                      ..+...+++++|..+....+.           +++-...+|+..+.++...|+....          ...+-.+++.   
T Consensus       144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l  223 (523)
T 4b4t_S          144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL  223 (523)
T ss_dssp             -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence            345566777777766654441           1333456777777777777766543          2233333322   


Q ss_pred             --CCC-CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618          170 --KPQ-DYSLWNKLGATQANSVQSADAILAYQRALDLKPNY-------VRAWANMGISYANQGMYEESVRYYVRALAMNP  239 (265)
Q Consensus       170 --~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  239 (265)
                        ++. ....+..+-..|...+.++.|.....++.  .|..       ...++.+|.++..+++|.+|.+++..|+...|
T Consensus       224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence              221 24667788889999999999999999884  3321       34567799999999999999999999999888


Q ss_pred             CCch-------hHHHHHHHHHHhCCccc
Q 024618          240 KADN-------AWQYLRISLRYAGRYPN  260 (265)
Q Consensus       240 ~~~~-------~~~~l~~~~~~~~~~~~  260 (265)
                      .+..       ++..+..+-.-+|+..+
T Consensus       302 ~~~~a~gfr~~a~K~lI~V~LLlG~iP~  329 (523)
T 4b4t_S          302 HNSKSLGFLQQSNKLHCCIQLLMGDIPE  329 (523)
T ss_dssp             CSSSCSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             cchhhhhHHHHHHHHHHhHHhhcCCCCC
Confidence            6532       22233333344676553

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=96.36  E-value=0.35  Score=40.09  Aligned_cols=53  Identities=4%  Similarity=-0.204  Sum_probs=27.9

Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618          150 YNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALD  202 (265)
Q Consensus       150 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  202 (265)
                      .++.|+++.|...+..+-...+..+...+.+|.++...|+.++|...|+++..
T Consensus       295 Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            34445666665555544332223344555555555555666666665555543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.19  E-value=0.17  Score=44.24  Aligned_cols=91  Identities=5%  Similarity=-0.132  Sum_probs=65.4

Q ss_pred             hhhhhhhhchHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHh
Q 024618          113 PPELSDSLYYADVARLFVEAAR-----MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK-PQDYSLWNKLGATQAN  186 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  186 (265)
                      ...+.+.|+.++|..+|.+..+     ..| +...|..+...+.+.|+.++|.+.|+++.+.. .-+..+|..+..++.+
T Consensus       134 IdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK  212 (1134)
T 3spa_A          134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR  212 (1134)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Confidence            3455666667777777655432     234 47788888888999999999999998887642 2356677777788888


Q ss_pred             hcCc-HHHHHHHHHHHhcC
Q 024618          187 SVQS-ADAILAYQRALDLK  204 (265)
Q Consensus       187 ~~~~-~~A~~~~~~~~~~~  204 (265)
                      .|+. ++|.+.+++.....
T Consensus       213 ~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          213 QDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HTCCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHcC
Confidence            8875 67888888877653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=96.15  E-value=0.087  Score=47.15  Aligned_cols=113  Identities=12%  Similarity=0.058  Sum_probs=58.7

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC---------------------
Q 024618          146 LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLK---------------------  204 (265)
Q Consensus       146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------------  204 (265)
                      +...+...+.++-+.+    .+...|.++...+.+|.++...|++++|..+|+++-..-                     
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence            3344445555544433    223445555555666666666666666666665542110                     


Q ss_pred             --CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHHhCCccccc
Q 024618          205 --PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD-----NAWQYLRISLRYAGRYPNRG  262 (265)
Q Consensus       205 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~  262 (265)
                        ...+..|..+..++.+.|.++.+++..+.|++..+.+.     ..|..+-..+..+|+|++|.
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay  958 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH  958 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence              00123445555566666666666666666665443222     13445555566666666664

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=96.08  E-value=0.76  Score=41.28  Aligned_cols=54  Identities=6%  Similarity=-0.195  Sum_probs=37.4

Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618           46 LLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR  103 (265)
Q Consensus        46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  103 (265)
                      .+...+...+.++-+.+    .+..-|.++...+.+|.++...|++++|..+|+++..
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~  870 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL  870 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence            34445566666655543    3345566777778888888888999999888887643

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.07  E-value=0.025  Score=44.68  Aligned_cols=92  Identities=16%  Similarity=0.116  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHhcCC---ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc-------
Q 024618           43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEP---TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA-------  112 (265)
Q Consensus        43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------  112 (265)
                      ++..+|..+...|++++|.+.|.++.....   .-.+.+.....++...+++..+...+.++...........       
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            555666666666666666666666655322   2245555555666666666666666666544322221111       


Q ss_pred             --hhhhhhhhchHHHHHHHHHHHh
Q 024618          113 --PPELSDSLYYADVARLFVEAAR  134 (265)
Q Consensus       113 --~~~~~~~~~~~~a~~~~~~~~~  134 (265)
                        |..+...++|.+|...|-.++.
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhc
Confidence              4444555555555555555444

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.99  E-value=6.3e-08  Score=75.32  Aligned_cols=219  Identities=13%  Similarity=0.124  Sum_probs=98.9

Q ss_pred             CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618            7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT   86 (265)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   86 (265)
                      ++.|..+|......|+..+||..|-++     +++..+.....+..+.|.+++-+.+++-+-+.- ..+.+-..|..+|.
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~~IDteLi~ayA  127 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALA  127 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CSTTTTHHHHHHHH
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccHHHHHHHHH
Confidence            445667777777777777777766554     333344444555566777777777766655432 22233333334444


Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024618           87 NELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQ  164 (265)
Q Consensus        87 ~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  164 (265)
                      +.++..+-.+.+     ..|+.....  |.-+...|.|+.|.-+|...        .-|..++.++..+|++..|++.-+
T Consensus       128 k~~rL~elEefl-----~~~N~A~iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaAr  194 (624)
T 3lvg_A          128 KTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGAR  194 (624)
T ss_dssp             TSCSSSTTTSTT-----SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTT
T ss_pred             hhCcHHHHHHHH-----cCCCcccHHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            443322111000     112221111  44444444444433333211        112334444555555555554443


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618          165 TALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA  244 (265)
Q Consensus       165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  244 (265)
                      ++     +++.+|-....++...+++.-|..+--..+- .|+.   +-.+...|...|.+++=+..++.++.+..-+...
T Consensus       195 KA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGm  265 (624)
T 3lvg_A          195 KA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGM  265 (624)
T ss_dssp             TC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHH
T ss_pred             hc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHH
Confidence            32     3444455555555555554444443333322 1111   1112233444445555555555555444444444


Q ss_pred             HHHHHHHHH
Q 024618          245 WQYLRISLR  253 (265)
Q Consensus       245 ~~~l~~~~~  253 (265)
                      ...||.+|.
T Consensus       266 FTELaILYs  274 (624)
T 3lvg_A          266 FTELAILYS  274 (624)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.77  E-value=0.035  Score=44.39  Aligned_cols=66  Identities=14%  Similarity=0.014  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD-------YSLWNKLGATQANSVQSADAILAYQRALDLKPNY  207 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  207 (265)
                      ..++..+-..|...+.++.|..+..++.  .|.+       ...++.+|.++..+++|.+|.+++..|+...|.+
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            3455666677777777777777777663  3322       3455667777777777777777777777766543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.78  E-value=0.88  Score=39.57  Aligned_cols=210  Identities=11%  Similarity=0.030  Sum_probs=97.0

Q ss_pred             HHHcCChHHHHHHHHHHHHhC-CCC----hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC------hH----HHHhhh
Q 024618           17 LFRKGLLSEAVLALEAEVLKN-PEN----SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT------NL----EVLLSL   81 (265)
Q Consensus        17 ~~~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~----~~~~~l   81 (265)
                      .+..|+.++++..+.+.+... ..+    .-+.+.+|.++...+  +++...+...+..+..      ..    .+-..+
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI  461 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence            345567777777766655422 122    225555666655554  3567777666654320      11    244566


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCCCCC-----CchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Q 024618           82 GVSHTNELEQAAALKYLYGWLRHHPKYGT-----IAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQY  156 (265)
Q Consensus        82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  156 (265)
                      |.++...++ +++...+...+..+.....     .+|.++...|+-+-...++..+.....+...-...+|..+...|+.
T Consensus       462 Gla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~  540 (963)
T 4ady_A          462 GLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ  540 (963)
T ss_dssp             HHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred             HHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence            666665554 3455555555543221100     0044445555554444445544443322222223334444456666


Q ss_pred             HHHHHHHHHHHhhCCCCHHH----HHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHH
Q 024618          157 DKAIESFQTALKLKPQDYSL----WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYY  231 (265)
Q Consensus       157 ~~A~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  231 (265)
                      +.+-...+.....  .++..    -..+|..|...|+...-...+..+.....++..-...+|......|+.+.+...+
T Consensus       541 e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv  617 (963)
T 4ady_A          541 ELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV  617 (963)
T ss_dssp             GGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            6555555544432  22222    2344555666676443333555544332222222222333333445544333333

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.62  E-value=0.46  Score=37.69  Aligned_cols=94  Identities=15%  Similarity=-0.047  Sum_probs=72.1

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCC--CC----hHHHHHHHHHHhhcCcHHHHHHHHHHHHh---cCCCh----HHH
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNP--EN----SEGWRLLGIAHAENDDDQQAIAAMMRAHE---AEPTN----LEV   77 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~----~~~   77 (265)
                      ..++..+...|++.+|..++..+....-  .+    .+.+......+...+++.+|...+.++..   ..+..    ...
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            3568999999999999999998864321  11    34777788899999999999999998742   12222    245


Q ss_pred             HhhhhhhhhhhhhHHHHHHHHHHHHhc
Q 024618           78 LLSLGVSHTNELEQAAALKYLYGWLRH  104 (265)
Q Consensus        78 ~~~la~~~~~~~~~~~A~~~~~~~~~~  104 (265)
                      +...|.++...++|.+|..+|..++..
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            677788888999999999999888764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.37  E-value=3.8  Score=35.84  Aligned_cols=212  Identities=9%  Similarity=0.016  Sum_probs=116.6

Q ss_pred             HHcCChHHHHHHHHHHHHhCC---C---Ch----HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH--HHHhhhhhhh
Q 024618           18 FRKGLLSEAVLALEAEVLKNP---E---NS----EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL--EVLLSLGVSH   85 (265)
Q Consensus        18 ~~~~~~~~A~~~~~~~~~~~~---~---~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~   85 (265)
                      ...|..++++..+...+..+.   .   +.    .+-..+|.++.-.++ +++.+.+...+..+....  .+-..+|.++
T Consensus       422 i~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~  500 (963)
T 4ady_A          422 IYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCM  500 (963)
T ss_dssp             HTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence            345555678888888776543   1   11    245577887777765 466777777776443222  3556778888


Q ss_pred             hhhhhHHHHHHHHHHHHhcCCCCCCCc----hhhhhhhhchHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHccCHH
Q 024618           86 TNELEQAAALKYLYGWLRHHPKYGTIA----PPELSDSLYYADVARLFVEAARMSPEDAD----VHIVLGVLYNLSRQYD  157 (265)
Q Consensus        86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~  157 (265)
                      ...|+.+.....+..+.+...+ ....    +..+...|+.+.+..+.+.....  .++.    +-..+|..|...|+..
T Consensus       501 vGTgn~~ai~~LL~~~~e~~~e-~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~  577 (963)
T 4ady_A          501 LGTGKPEAIHDMFTYSQETQHG-NITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNS  577 (963)
T ss_dssp             TTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred             cccCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHH
Confidence            8888876666666655543221 1111    33344556666555555554442  2333    3345677788899965


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHH----HHHHHHhcCCcHHHHHHHHH
Q 024618          158 KAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWAN----MGISYANQGMYEESVRYYVR  233 (265)
Q Consensus       158 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~  233 (265)
                      .-...+..+.....++..-...+|......|+.+.+.+.+.....  ..++.+.+.    +|.+....+ ..++++.+.+
T Consensus       578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~-~~~aid~L~~  654 (963)
T 4ady_A          578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKG-LQSAIDVLDP  654 (963)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSC-CHHHHHHHHH
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence            555566666653222333333344444455666555554443332  223444444    333332233 3678888877


Q ss_pred             HHh
Q 024618          234 ALA  236 (265)
Q Consensus       234 a~~  236 (265)
                      ...
T Consensus       655 L~~  657 (963)
T 4ady_A          655 LTK  657 (963)
T ss_dssp             HHT
T ss_pred             Hcc
Confidence            754

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=92.79  E-value=2.3  Score=31.82  Aligned_cols=79  Identities=9%  Similarity=-0.072  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----------------h---hCCCCHHHHHHHHH-
Q 024618          123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL----------------K---LKPQDYSLWNKLGA-  182 (265)
Q Consensus       123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------------~---~~~~~~~~~~~l~~-  182 (265)
                      .+|+.+-.+.-...-.++..+..+|..+...|++.+|..+|-..-                +   -.|.....+...+. 
T Consensus       117 ~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL  196 (312)
T 2wpv_A          117 TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVF  196 (312)
T ss_dssp             HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence            334444433322233678999999999999999999998774210                1   12222344444443 


Q ss_pred             HHHhhcCcHHHHHHHHHHH
Q 024618          183 TQANSVQSADAILAYQRAL  201 (265)
Q Consensus       183 ~~~~~~~~~~A~~~~~~~~  201 (265)
                      .|...++...|...++...
T Consensus       197 ~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          197 NYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HHHHTTBHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHH
Confidence            4567788888888777654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.06  E-value=5.8  Score=34.94  Aligned_cols=93  Identities=11%  Similarity=0.072  Sum_probs=70.2

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc-CC-------------------
Q 024618          146 LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL-KP-------------------  205 (265)
Q Consensus       146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-------------------  205 (265)
                      +...+...|.++-+.    +.+...|.++..-+.+|.++...|++++|..+|+++-.- ..                   
T Consensus       816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e  891 (950)
T 4gq2_M          816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  891 (950)
T ss_dssp             HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred             HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence            555666777776543    455677888888899999999999999999999987421 00                   


Q ss_pred             ---cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC-CCCc
Q 024618          206 ---NYVRAWANMGISYANQGMYEESVRYYVRALAMN-PKAD  242 (265)
Q Consensus       206 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~  242 (265)
                         .....|..+..++.+.+-++-++...+.|++.. ++++
T Consensus       892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~  932 (950)
T 4gq2_M          892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE  932 (950)
T ss_dssp             TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred             ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence               012356778899999999999999999999754 4444

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=91.97  E-value=3  Score=31.22  Aligned_cols=138  Identities=9%  Similarity=-0.039  Sum_probs=75.5

Q ss_pred             hhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHccCHH
Q 024618           83 VSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARM-----SPEDADVHIVLGVLYNLSRQYD  157 (265)
Q Consensus        83 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~  157 (265)
                      .=|...+++++|++.+.....           .+.+.|++..|.++..-.++.     .|-+......+..++.....-+
T Consensus        41 ~Ry~~~~~~~eAidlL~~ga~-----------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~  109 (312)
T 2wpv_A           41 NRYVRSKSYEHAIELISQGAL-----------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSE  109 (312)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-----------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTC
T ss_pred             HHHHHhcCHHHHHHHHHHHHH-----------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCC
Confidence            345566788888887765543           345556666665543333222     2334555556666654433211


Q ss_pred             -HHHHHHHHHHhh-------CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc---CCcHH
Q 024618          158 -KAIESFQTALKL-------KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ---GMYEE  226 (265)
Q Consensus       158 -~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~  226 (265)
                       .=....+++++-       .-.+|..+..+|..+...|++.+|..+|-..   +.+++..+..+-.-+...   |...+
T Consensus       110 ~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~~~~~~~e  186 (312)
T 2wpv_A          110 PNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQVDDIEDST  186 (312)
T ss_dssp             TTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred             chHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhcCCCCcch
Confidence             223444455432       1246888899999999999998888887521   122344444433333333   55555


Q ss_pred             HHHHHHHH
Q 024618          227 SVRYYVRA  234 (265)
Q Consensus       227 A~~~~~~a  234 (265)
                      +--+.-++
T Consensus       187 ~dlf~~Ra  194 (312)
T 2wpv_A          187 VAEFFSRL  194 (312)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54444444

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=90.99  E-value=2  Score=27.81  Aligned_cols=51  Identities=12%  Similarity=0.023  Sum_probs=24.1

Q ss_pred             HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618           19 RKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE   69 (265)
Q Consensus        19 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~   69 (265)
                      .+|+-++-.+++...+...+-++..+..+|.+|.+.|+..+|.+.+.+|-+
T Consensus       103 ~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A          103 IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            344444444444443333344455555555555555555555555555544

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=90.42  E-value=4.6  Score=30.54  Aligned_cols=134  Identities=13%  Similarity=0.095  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-------HH---------hhCCCCHHHHHHHHH-HHH
Q 024618          123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT-------AL---------KLKPQDYSLWNKLGA-TQA  185 (265)
Q Consensus       123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~---------~~~~~~~~~~~~l~~-~~~  185 (265)
                      .+|+.+-.+.-...-.++..+..+|..+.+.+++.+|..+|--       .+         +..|.....+...+. .|.
T Consensus       119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL  198 (336)
T 3lpz_A          119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYL  198 (336)
T ss_dssp             HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            4455555442223346789999999999999999999877621       00         112333444555544 466


Q ss_pred             hhcCcHHHHHHHHHHHh----cCCc------------------chhh-HHHHHHHHHhcCC---cHHHHHHHHHHHhcCC
Q 024618          186 NSVQSADAILAYQRALD----LKPN------------------YVRA-WANMGISYANQGM---YEESVRYYVRALAMNP  239 (265)
Q Consensus       186 ~~~~~~~A~~~~~~~~~----~~~~------------------~~~~-~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~  239 (265)
                      ..++...|...++...+    .+|.                  .|.. +..+-..-.+.+.   +..-.+.|+..++.+|
T Consensus       199 ~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~  278 (336)
T 3lpz_A          199 LVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELN  278 (336)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTT
T ss_pred             HhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcH
Confidence            78888888876555443    2221                  2211 1122223334443   4445566667777777


Q ss_pred             -CCchhHHHHHHHHHHhC
Q 024618          240 -KADNAWQYLRISLRYAG  256 (265)
Q Consensus       240 -~~~~~~~~l~~~~~~~~  256 (265)
                       ........+|..|+...
T Consensus       279 ~~~~~~L~~IG~~YFgi~  296 (336)
T 3lpz_A          279 GIWDTALELIAEMYFGIQ  296 (336)
T ss_dssp             TTTHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence             77788888999988653

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=87.66  E-value=0.0048  Score=48.80  Aligned_cols=171  Identities=14%  Similarity=0.123  Sum_probs=124.2

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      +.-..|..++..|.|+.|.-+|..+    +    -|..|+.++..+|+|..|++..+++     +++.+|-....+....
T Consensus       146 ~iq~VGDrcf~e~lYeAAKilys~i----s----N~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~  212 (624)
T 3lvg_A          146 HIQQVGDRCYDEKMYDAAKLLYNNV----S----NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG  212 (624)
T ss_dssp             CTHHHHHHHHHSCCSTTSSTTGGGS----C----CCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHS
T ss_pred             cHHHHHHHHHHccCHHHHHHHHHhC----c----cHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCc
Confidence            3456788888999988887776643    1    2456788889999999888877665     5566777777777777


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK  168 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  168 (265)
                      +++.-|-.+--.++ ..|+...-+...|...|.+++-+.+++.++.+...+...+..+|.+|.+- ++++-++.++--..
T Consensus       213 ~EfrLAqicGLniI-vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~s  290 (624)
T 3lvg_A          213 KEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWS  290 (624)
T ss_dssp             CTTTTTTHHHHHHH-CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS
T ss_pred             hHHHHHHHhcchhc-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence            77766655443333 45666666688889999999999999999999888999999999988764 46666666543221


Q ss_pred             h--CCC------CHHHHHHHHHHHHhhcCcHHHH
Q 024618          169 L--KPQ------DYSLWNKLGATQANSVQSADAI  194 (265)
Q Consensus       169 ~--~~~------~~~~~~~l~~~~~~~~~~~~A~  194 (265)
                      .  -|.      ....|..+..+|..-.+++.|.
T Consensus       291 riNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          291 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            1  122      2356888888888888888775

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=86.83  E-value=4.5  Score=26.87  Aligned_cols=61  Identities=16%  Similarity=0.190  Sum_probs=46.5

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCC--h-H---HHHH---HHHHHhhcCcHHHHHHHHHHHHhc
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPEN--S-E---GWRL---LGIAHAENDDDQQAIAAMMRAHEA   70 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~-~---~~~~---l~~~~~~~~~~~~A~~~~~~~~~~   70 (265)
                      .+..|..++..|+|-+|-+.++.+....+..  . .   .+..   .|..+...|+...|...+.+++..
T Consensus        35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~  104 (161)
T 2ijq_A           35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY  104 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4677889999999999999999998876544  1 2   2222   344567789999999999999774

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.64  E-value=16  Score=32.21  Aligned_cols=112  Identities=7%  Similarity=-0.188  Sum_probs=69.3

Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHH
Q 024618           46 LLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADV  125 (265)
Q Consensus        46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  125 (265)
                      .+...+...|.++-+.    ..+..-|.++..-+.+|.++...|++++|..+|+++-.--....... ..      ....
T Consensus       815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~-~~------~~~~  883 (950)
T 4gq2_M          815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-AV------LREF  883 (950)
T ss_dssp             HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSC-GG------GHHH
T ss_pred             HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccc-cc------hhhh
Confidence            3556667777776543    45677788888889999999999999999999998753211111000 00      0111


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618          126 ARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL  169 (265)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  169 (265)
                      ...+. ..+........|..++.++...+-++-++...+.|++.
T Consensus       884 ~~ll~-~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~  926 (950)
T 4gq2_M          884 QEIAE-KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS  926 (950)
T ss_dssp             HHHHH-HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hhccC-cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            11110 11111112346667777888888888888888888864

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=85.54  E-value=3.1  Score=23.40  Aligned_cols=31  Identities=13%  Similarity=0.099  Sum_probs=18.8

Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHhcCCChHH
Q 024618           46 LLGIAHAENDDDQQAIAAMMRAHEAEPTNLE   76 (265)
Q Consensus        46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~   76 (265)
                      .+|..+...|++++|..+|-+|+...|.-.+
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~   52 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   52 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            3566666666666666666666666655433

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=85.08  E-value=4.2  Score=32.31  Aligned_cols=31  Identities=10%  Similarity=-0.023  Sum_probs=18.1

Q ss_pred             hHHHHHHHHHhcCCcHHHHHHHHHHHhc-CCC
Q 024618          210 AWANMGISYANQGMYEESVRYYVRALAM-NPK  240 (265)
Q Consensus       210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~  240 (265)
                      ..+.+|.++...++|.+|.+.+..|+.. .|.
T Consensus       222 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~  253 (455)
T 3t5v_B          222 YRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL  253 (455)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             eeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence            4455666666666666666666666655 443

>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A

Probab=82.79  E-value=4.7  Score=23.99  Aligned_cols=58  Identities=19%  Similarity=0.170  Sum_probs=40.9

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChH----HHH--HHHHHHhhcCcHHHHHHHHHHHHh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSE----GWR--LLGIAHAENDDDQQAIAAMMRAHE   69 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~--~l~~~~~~~~~~~~A~~~~~~~~~   69 (265)
                      .+..|..++..|+|=+|=+.++.+....|....    .+.  ..|..+...|+.  |...+.+++.
T Consensus         4 ~~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~   67 (94)
T 2cwy_A            4 DWEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA   67 (94)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence            467888999999999999999999888754211    222  233445566776  7788887766

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=82.56  E-value=1.5  Score=25.09  Aligned_cols=26  Identities=15%  Similarity=0.083  Sum_probs=20.8

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHH
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVL   35 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~   35 (265)
                      .+++|+.+...|+|+.|+.+|+.+++
T Consensus        15 ~~k~ARe~Al~GnYdta~~yY~g~~~   40 (78)
T 2rpa_A           15 NVKLAREYALLGNYDSAMVYYQGVLD   40 (78)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            35678888888888888888888765

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=81.77  E-value=4.6  Score=28.08  Aligned_cols=53  Identities=8%  Similarity=-0.151  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh-----hHHHHHHHHHhcCCcHH
Q 024618          174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR-----AWANMGISYANQGMYEE  226 (265)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~  226 (265)
                      ....+.+|.++...++|.+|.+.+..|+...|....     ++..+.-+-.-+|+...
T Consensus        14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~   71 (203)
T 3t5x_A           14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT   71 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            456788899999999999999999999988776532     23334444456677653

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=80.14  E-value=6  Score=22.23  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=22.3

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024618          144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDYS  175 (265)
Q Consensus       144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  175 (265)
                      ..+|..+...|++++|..+|-+|+...|.-..
T Consensus        21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~   52 (73)
T 3ax2_A           21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   52 (73)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            45677777777777777777777777665433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-23
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-21
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-16
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-16
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-20
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	8e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-19
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-13
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-12
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	9e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-07
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-11
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	5e-08
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	8e-07
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	6e-06
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-11
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-09
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.004
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	2e-08
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	9e-08
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-07
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-07
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	5e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-06
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	4e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	6e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	0.003
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	5e-04
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	6e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	7e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.002
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	0.003
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (234), Expect = 4e-23
 Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 5/224 (2%)

Query: 37  NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALK 96
            P  +  W  LG       +   AI    +A   +P  L+  ++LG           A+ 
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224

Query: 97  YLYGWLRHHPKYGTIAPPELSDSLY----YADVARLFVEAARMSPEDADVHIVLGVLYNL 152
                L   P +       L+   Y           +  A  + P   D +  L      
Sbjct: 225 AYLRALSLSPNHAV-VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283

Query: 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212
                +A + + TAL+L P      N L   +       +A+  Y++AL++ P +  A +
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343

Query: 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG 256
           N+      QG  +E++ +Y  A+ ++P   +A+  +  +L+   
Sbjct: 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.1 bits (222), Expect = 2e-21
 Identities = 52/287 (18%), Positives = 95/287 (33%), Gaps = 37/287 (12%)

Query: 10  PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE 69
           P++     ++ G    A         + P+N+    LL   H +     ++      A +
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 70  AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDS---------- 119
             P   E   +LG  +    +   A+++    LR  P +        +            
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 120 ---------------------------LYYADVARLFVEAARMSPEDADVHIVLGVLYNL 152
                                          +    +++A    P  A     LG ++N 
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181

Query: 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212
             +   AI  F+ A+ L P     +  LG     +     A+ AY RAL L PN+     
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241

Query: 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYP 259
           N+   Y  QG+ + ++  Y RA+ + P   +A+  L  +L+  G   
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (182), Expect = 5e-16
 Identities = 34/209 (16%), Positives = 69/209 (33%), Gaps = 31/209 (14%)

Query: 14  GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73
           G  L    +   AV A    +  +P ++     L   + E      AI    RA E +P 
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269

Query: 74  NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA 133
             +   +L  +   +   A A       LR  P +                         
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS---------------------- 307

Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
                       L  +       ++A+  ++ AL++ P+  +  + L +      +  +A
Sbjct: 308 ---------LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358

Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQG 222
           ++ Y+ A+ + P +  A++NMG +     
Sbjct: 359 LMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (180), Expect = 9e-16
 Identities = 33/138 (23%), Positives = 58/138 (42%)

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
                   F +A  + P   D +I LG +   +R +D+A+ ++  AL L P    +   L
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
                       AI  Y+RA++L+P++  A+ N+  +   +G   E+   Y  AL + P 
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 241 ADNAWQYLRISLRYAGRY 258
             ++   L    R  G  
Sbjct: 304 HADSLNNLANIKREQGNI 321

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 13/82 (15%), Positives = 24/82 (29%)

Query: 1   MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA 60
                   +          +G + EAV      +   PE +     L     +    Q+A
Sbjct: 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358

Query: 61  IAAMMRAHEAEPTNLEVLLSLG 82
           +     A    PT  +   ++G
Sbjct: 359 LMHYKEAIRISPTFADAYSNMG 380

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (218), Expect = 1e-20
 Identities = 31/238 (13%), Positives = 73/238 (30%), Gaps = 5/238 (2%)

Query: 25  EAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE--AEPTNLEVLLSLG 82
           ++   L    +   + ++               Q     M+      A    +E  L   
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNH 63

Query: 83  VSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADV 142
               N++                     ++    + S +Y  + +       +       
Sbjct: 64  AFK-NQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVK 122

Query: 143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALD 202
              LG++ N        ++   ++     Q       LG       Q++ A   Y+ A  
Sbjct: 123 SSQLGIISNKQTHTSAIVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYRHAAQ 180

Query: 203 LKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPN 260
           L P+  + +  + I  +++G +  ++ YY R++A+      A   L+ +L  A    +
Sbjct: 181 LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRD 238

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 8e-08
 Identities = 21/173 (12%), Positives = 57/173 (32%), Gaps = 7/173 (4%)

Query: 46  LLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHH 105
           L     A +    Q +  +      +         LG+    +   +A +K       + 
Sbjct: 91  LSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI 150

Query: 106 PKYGTIAPPELSDSLYY----ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE 161
            ++  +    L D   Y    +     +  AA++ P +   +  L +L +    +   I 
Sbjct: 151 CQHCLV---HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF 207

Query: 162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM 214
            +  ++ +K    +    L    + +++S D +       D    +++   ++
Sbjct: 208 YYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHV 260

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 1e-06
 Identities = 8/76 (10%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249
           S  +    ++A  LK +   +       + ++   ++    Y + L  + +     +  +
Sbjct: 2   SLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQD---LYQKMLVTDLEYALDKKVEQ 58

Query: 250 ISLRYAGRYPNRGDIF 265
               +A  + N+    
Sbjct: 59  DLWNHA--FKNQITTL 72

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (204), Expect = 3e-19
 Identities = 111/288 (38%), Positives = 158/288 (54%), Gaps = 31/288 (10%)

Query: 2   NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAI 61
           NP   HP P +EG    ++G L  AVL  EA V ++P++ E W+ LG   AEN+ +  AI
Sbjct: 14  NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 73

Query: 62  AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPP------- 114
           +A+ R  E +P N   L++L VS TNE  Q  A + L  WLR+ P Y  +  P       
Sbjct: 74  SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 133

Query: 115 -----------ELSDSLYYADVARLFVEAARMSPEDADVHIV--LGVLYNLSRQYDKAIE 161
                       L     + +V  LF+ A R+ P   D  +   LGVL+NLS +YDKA++
Sbjct: 134 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 193

Query: 162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ 221
            F  AL ++P DY LWNKLGAT AN  QS +A+ AY+RAL+L+P Y+R+  N+GIS  N 
Sbjct: 194 CFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 253

Query: 222 GMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGRY 258
           G + E+V +++ AL M  K           ++N W  LR++L   G+ 
Sbjct: 254 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 23/121 (19%)

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
              +    +  A  + P        LG+       + +A+E F  AL ++ +      + 
Sbjct: 221 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280

Query: 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
           GA   N                        W+ + ++ +  G  +       R L+    
Sbjct: 281 GAMSEN-----------------------IWSTLRLALSMLGQSDAYGAADARDLSTLLT 317

Query: 241 A 241
            
Sbjct: 318 M 318

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 4/74 (5%)

Query: 196 AYQRALDLKPN----YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS 251
            Y +    +              G+    +G    +V  +  A+  +PK   AWQYL  +
Sbjct: 3   TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT 62

Query: 252 LRYAGRYPNRGDIF 265
                +        
Sbjct: 63  QAENEQELLAISAL 76

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 65.6 bits (158), Expect = 3e-13
 Identities = 34/240 (14%), Positives = 63/240 (26%), Gaps = 5/240 (2%)

Query: 23  LSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLG 82
           L+     L +  L + E ++     G+ +        A     +A    P   EV   LG
Sbjct: 19  LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG 78

Query: 83  VSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE---LSDSLYYADVARLFVEAARMSPED 139
           +  T      AA +     L   P Y          L             +   +  P D
Sbjct: 79  IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 138

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKP--QDYSLWNKLGATQANSVQSADAILAY 197
               + L +      +        Q   K       +++        +            
Sbjct: 139 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADA 198

Query: 198 QRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257
                L  +       +G  Y + G  + +   +  A+A N       +Y  + L   G+
Sbjct: 199 TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 46.0 bits (107), Expect = 1e-06
 Identities = 29/136 (21%), Positives = 50/136 (36%)

Query: 123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGA 182
           A + ++    A    E A +    GVLY+       A   F  AL ++P    ++N LG 
Sbjct: 20  ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGI 79

Query: 183 TQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242
               +     A  A+   L+L P Y  A  N GI+    G  + +    +     +P   
Sbjct: 80  YLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 139

Query: 243 NAWQYLRISLRYAGRY 258
               +L ++ +     
Sbjct: 140 FRSLWLYLAEQKLDEK 155

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 4/125 (3%)

Query: 145 VLGVLYNLSRQYDKAIESFQTALK----LKPQDYSLWNKLGATQANSVQSADAILAYQRA 200
           VL V    + Q +  +   +  L        +   L  + G    +    A A   + +A
Sbjct: 4   VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA 63

Query: 201 LDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPN 260
           L ++P+    +  +GI     G ++ +   +   L ++P  + A     I+L Y GR   
Sbjct: 64  LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL 123

Query: 261 RGDIF 265
             D  
Sbjct: 124 AQDDL 128

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 62.0 bits (150), Expect = 5e-12
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 1/131 (0%)

Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
                 L +EA + SP+DA +      L  +   +++A E    ++KL P+     ++L 
Sbjct: 12  LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR 71

Query: 182 ATQANSVQSADAILAYQRALDLK-PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
                +    D       A  L     +               YE+     ++   +  +
Sbjct: 72  HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131

Query: 241 ADNAWQYLRIS 251
                     S
Sbjct: 132 KGFLANDTSFS 142

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 1/105 (0%)

Query: 155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM 214
           Q  +A+E    A+K  P+D SL +              A     +++ L P Y+   + +
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70

Query: 215 GISY-ANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
                A Q   + +       +    +              +  Y
Sbjct: 71  RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDY 115

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 49.7 bits (118), Expect = 9e-08
 Identities = 9/69 (13%), Positives = 23/69 (33%)

Query: 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250
             A+     A+   P      ++        G +E +    ++++ + P+       LR 
Sbjct: 13  QQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH 72

Query: 251 SLRYAGRYP 259
            ++ A    
Sbjct: 73  LVKAAQARK 81

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 48.5 bits (115), Expect = 2e-07
 Identities = 15/135 (11%), Positives = 40/135 (29%), Gaps = 4/135 (2%)

Query: 13  EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP 72
           + +    +G L +A+  L   +  +P+++            + D ++A   +M++ +  P
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 73  TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY----YADVARL 128
             L     L         +    +                     +       Y  V+ L
Sbjct: 62  EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 121

Query: 129 FVEAARMSPEDADVH 143
            ++   +  E   + 
Sbjct: 122 ALQIEELRQEKGFLA 136

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.2 bits (147), Expect = 2e-11
 Identities = 27/244 (11%), Positives = 65/244 (26%), Gaps = 4/244 (1%)

Query: 12  KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAE--NDDDQQAIAAMMRAHE 69
            E        L+   +  LE+ +  NP++   W       +     +  + +    R  E
Sbjct: 78  TEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE 137

Query: 70  AEPTNLEVLLSL-GVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARL 128
           A+  N         V+    +  A  L +    +  +    + +    S  L        
Sbjct: 138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS-SWHYRSCLLPQLHPQPD 196

Query: 129 FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSV 188
                R+        + L      +   D++   +   L  + +                
Sbjct: 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQ 256

Query: 189 QSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL 248
              ++    Q         +     +  +       +E+++Y+    A++P        L
Sbjct: 257 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316

Query: 249 RISL 252
           R   
Sbjct: 317 RSKF 320

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.8 bits (120), Expect = 5e-08
 Identities = 27/265 (10%), Positives = 62/265 (23%), Gaps = 21/265 (7%)

Query: 11  LKEGQELFRKGLLSEAVLALEAEVLK-NPENSEGWRLLGIAHAENDDD----------QQ 59
            +   +  + G L E+VL L +++L  NP+ +  W          + +          + 
Sbjct: 32  TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKA 91

Query: 60  AIAAMMRAHEAEPTNLEVLLSLGVSHTN------ELEQAAALKYLYGWLRHHPKYGTIAP 113
            +  +       P +           +         E     ++L    R+   +     
Sbjct: 92  ELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRF 151

Query: 114 PELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173
                ++  A+           +  +         L         +    +    +  ++
Sbjct: 152 VAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE 211

Query: 174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR 233
             L      T  N      +   Y R L  +   +                 ES +    
Sbjct: 212 LELVQNAFFTDPND----QSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQE 267

Query: 234 ALAMNPKADNAWQYLRISLRYAGRY 258
               N         L  +L      
Sbjct: 268 LEPENKWCLLTIILLMRALDPLLYE 292

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.9 bits (110), Expect = 8e-07
 Identities = 17/182 (9%), Positives = 49/182 (26%), Gaps = 1/182 (0%)

Query: 1   MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA 60
            +    H    +           +E +   ++ + +N  N   W        +      +
Sbjct: 138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197

Query: 61  IAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120
                         LE++ +   +  N+       ++L G      +       + +   
Sbjct: 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSV-EKSTVLQ 256

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180
              +  +   E    +       I+L    +      + ++ F T   + P   +  + L
Sbjct: 257 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316

Query: 181 GA 182
            +
Sbjct: 317 RS 318

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.2 bits (103), Expect = 6e-06
 Identities = 18/158 (11%), Positives = 43/158 (27%), Gaps = 13/158 (8%)

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVL----------YNLSRQYDKAIESFQTALKLK 170
               V  L  +    +P+ A +      +             +      +   ++ L++ 
Sbjct: 44  LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 103

Query: 171 PQDYSLWNKLGAT--QANSVQSADAILAYQRALDLKPN-YVRAWANMGISYANQGMYEES 227
           P+ Y  W+       +      A  +    R L+     +        ++        E 
Sbjct: 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163

Query: 228 VRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265
           + +    +  N    ++W Y    L      P+ G   
Sbjct: 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 11/122 (9%)

Query: 147 GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN 206
           G L   + +     +  +   KLK    S    +   +         +    + L   P+
Sbjct: 3   GRLKVKTSEEQAEAKRLEREQKLK-LYQSATQAVFQKRQAGELDESVLELTSQILGANPD 61

Query: 207 YVRAW----------ANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG 256
           +   W                  +  + +  + +    L +NPK+   W +    L    
Sbjct: 62  FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121

Query: 257 RY 258
             
Sbjct: 122 EP 123

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.6 bits (143), Expect = 2e-11
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 1/113 (0%)

Query: 136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL 195
           SP  A      G    + R+Y +A   +  A+   P     +           Q   A+ 
Sbjct: 1   SPS-AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA 59

Query: 196 AYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL 248
             +RAL+L    V+A   +G        Y+E++    RA ++  +    +   
Sbjct: 60  DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 112

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 6e-06
 Identities = 24/127 (18%), Positives = 42/127 (33%)

Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
           Y + A  +  A   +P  A  +    + Y   +Q ++A+   + AL+L  Q       LG
Sbjct: 20  YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79

Query: 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA 241
             Q       +AI   QRA  L       + +   S       +       R +    + 
Sbjct: 80  QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESEL 139

Query: 242 DNAWQYL 248
            +    L
Sbjct: 140 HSYLTRL 146

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 26/175 (14%), Positives = 62/175 (35%), Gaps = 2/175 (1%)

Query: 12  KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAE 71
           ++G  LF      EA       + +NP  +  +    + + +    +QA+A   RA E +
Sbjct: 9   EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD 68

Query: 72  PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVE 131
             +++    LG           A+  L        +       ++  +L  A   R    
Sbjct: 69  GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI 128

Query: 132 AARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN 186
             R   +++++H    +   ++ + ++ +E  Q   +    D  +  +    +A 
Sbjct: 129 EERRIHQESELH--SYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 23/219 (10%), Positives = 51/219 (23%), Gaps = 36/219 (16%)

Query: 40  NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLY 99
           +++  +  G          +A A   RA    P       +  + +    +   AL    
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 100 GWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA 159
             L    +                                   H  LG        YD+A
Sbjct: 63  RALELDGQSV-------------------------------KAHFFLGQCQLEMESYDEA 91

Query: 160 IESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA 219
           I + Q A  L  +    +     +         A      +++ +  +  +  +  ++  
Sbjct: 92  IANLQRAYSLAKEQRLNFGDDIPSAL-----RIAKKKRWNSIEERRIHQESELHSYLTRL 146

Query: 220 NQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
                E  +    R    +    +             +Y
Sbjct: 147 IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKY 185

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 1e-09
 Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAY 197
           + A     LG      + +D A++ +  A +L P + +      A               
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 198 QRALDLKP-------NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244
           ++A+++            +A+A +G SY  +  Y++++ +Y ++LA +   D  
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 115

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 13/81 (16%), Positives = 28/81 (34%)

Query: 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236
             +LG           A+  Y +A +L P  +    N    Y  +G Y +      +A+ 
Sbjct: 7   EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66

Query: 237 MNPKADNAWQYLRISLRYAGR 257
           +  +    ++ +  +    G 
Sbjct: 67  VGRENREDYRQIAKAYARIGN 87

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 5/108 (4%)

Query: 155 QYDKAIESFQTALKLKPQD-----YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR 209
              K  + FQ+                W  +     + ++    +L        K     
Sbjct: 14  DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD 73

Query: 210 AWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257
               + +       YE++++Y    L   P+ + A +  R+  +   +
Sbjct: 74  YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 9e-08
 Identities = 16/131 (12%), Positives = 50/131 (38%), Gaps = 1/131 (0%)

Query: 136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT-QANSVQSADAI 194
           S +  DV+     +     + ++A +  + A++L   +Y++W+      ++      + +
Sbjct: 39  SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 98

Query: 195 LAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY 254
                 ++ +P   + W +  +         + + +    L  + K  +AWQ+ +  ++ 
Sbjct: 99  NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 158

Query: 255 AGRYPNRGDIF 265
              + N     
Sbjct: 159 FKLWDNELQYV 169

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 3e-07
 Identities = 16/146 (10%), Positives = 50/146 (34%), Gaps = 1/146 (0%)

Query: 121 YYADVARLFVEAARMSPEDADVHIVLG-VLYNLSRQYDKAIESFQTALKLKPQDYSLWNK 179
                 +L  +A  ++  +  V      +L +L +   + +      ++ +P++Y +W+ 
Sbjct: 58  RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 117

Query: 180 LGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
                      +  +      L+       AW +         +++  ++Y  + L  + 
Sbjct: 118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 177

Query: 240 KADNAWQYLRISLRYAGRYPNRGDIF 265
           + ++ W      +     Y +R  + 
Sbjct: 178 RNNSVWNQRYFVISNTTGYNDRAVLE 203

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 3e-07
 Identities = 23/237 (9%), Positives = 62/237 (26%), Gaps = 11/237 (4%)

Query: 37  NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALK 96
           + +  + +         ++  ++A      A E    N  V     V   +  +      
Sbjct: 39  SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 98

Query: 97  YLYGWLRHHPKYGTIAPPEL----SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL 152
                +                        +       +      ++         +   
Sbjct: 99  NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 158

Query: 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN------SVQSADAILAYQRALDLKPN 206
            + +D  ++     LK   ++ S+WN+     +N             +      + L P+
Sbjct: 159 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 218

Query: 207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD 263
              AW  +     ++G+  +      + L + P   + +    +   Y     N+ D
Sbjct: 219 NESAWNYLKGILQDRGL-SKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 274

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 9/94 (9%), Positives = 24/94 (25%)

Query: 167 LKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE 226
           + L    Y L+              +        +     +   +             E 
Sbjct: 2   VSLDSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSER 61

Query: 227 SVRYYVRALAMNPKADNAWQYLRISLRYAGRYPN 260
           + +    A+ +N      W + R+ L+   +  +
Sbjct: 62  AFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLH 95

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 166 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISY-ANQGMY 224
            +    +   +++   A      +S  A    + A++L       W    +   + Q   
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 225 EESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
            E + Y    +   PK    W + R+ + +    
Sbjct: 95  HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 128

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 15/125 (12%), Positives = 41/125 (32%), Gaps = 16/125 (12%)

Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA 196
              + +   +G +Y + +   +A ++F  ++         + + G     + +   AI  
Sbjct: 33  DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD 92

Query: 197 YQRALDL----------------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240
            + AL                  K        N+   YA +  ++++      A +M  +
Sbjct: 93  LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152

Query: 241 ADNAW 245
             ++ 
Sbjct: 153 PRHSK 157

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 27/196 (13%), Positives = 52/196 (26%), Gaps = 30/196 (15%)

Query: 13  EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP 72
           EG     K     A+ A  A       +S     +G  +    +  +A  A  R+   + 
Sbjct: 11  EGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 73  TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEA 132
                    G+ +    +   A+K L   L        I    L                
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL---------------G 112

Query: 133 ARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192
            +      +V   +  +Y    ++ KA E    A  +K +                +   
Sbjct: 113 LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDK 160

Query: 193 AILAYQRALDLKPNYV 208
           A+    +    +P  +
Sbjct: 161 AMECVWKQKLYEPVVI 176

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 22/112 (19%), Positives = 43/112 (38%)

Query: 138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAY 197
           E  +     G         D A++ +  A+KL P ++ L++   A  A       A    
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 198 QRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249
            + +DLKP++ + ++    +      +EE+ R Y   L          + L+
Sbjct: 61  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 19/120 (15%), Positives = 46/120 (38%)

Query: 138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAY 197
           + A+        Y  ++ Y+ AI+ +  A++L P +   +         +     A+   
Sbjct: 8   KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 67

Query: 198 QRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257
            RA++L   Y++ +     S    G +  ++R Y   + + P   +A    +   +   +
Sbjct: 68  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 127

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 19/129 (14%), Positives = 44/129 (34%), Gaps = 16/129 (12%)

Query: 146 LGVLYNLSRQYDKAIESFQTA----------------LKLKPQDYSLWNKLGATQANSVQ 189
           +G  +  S+ ++ AI+ +                    KL+P   S    +GA +     
Sbjct: 33  IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD 92

Query: 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249
              A+ +   AL++ P+  +A       +     Y++++    +A  + P+       L 
Sbjct: 93  WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 152

Query: 250 ISLRYAGRY 258
              +     
Sbjct: 153 KVKQKIKAQ 161

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 40.3 bits (93), Expect = 6e-05
 Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 15/136 (11%)

Query: 138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY---------------SLWNKLGA 182
           E A +    G +Y    +Y +A+  +   +     +Y               + +  L  
Sbjct: 13  EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72

Query: 183 TQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242
                 +   A+    +AL L     +     G +      +E +   + + L +NP+  
Sbjct: 73  CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 132

Query: 243 NAWQYLRISLRYAGRY 258
            A   + +  + A  +
Sbjct: 133 AARLQIFMCQKKAKEH 148

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 1/139 (0%)

Query: 89  LEQAAALKYLYGWLRHHPKY-GTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLG 147
           LEQAA +K          KY   +       S    +      E+           + L 
Sbjct: 12  LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 71

Query: 148 VLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY 207
           + Y   R+Y KA+E    AL L   +     + G  Q    +   A   +++ L++ P  
Sbjct: 72  MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 131

Query: 208 VRAWANMGISYANQGMYEE 226
             A   + +       + E
Sbjct: 132 KAARLQIFMCQKKAKEHNE 150

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 15/139 (10%), Positives = 39/139 (28%), Gaps = 10/139 (7%)

Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSL---- 176
               +  L       S   ++ + V  + + ++     A    +   K +  +       
Sbjct: 194 QLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253

Query: 177 WNKLGATQANSVQSADAILAYQRAL------DLKPNYVRAWANMGISYANQGMYEESVRY 230
           W  +   Q    +   A +  +          L  +  R    +   Y   G   ++ R 
Sbjct: 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 313

Query: 231 YVRALAMNPKADNAWQYLR 249
            + AL +  +      ++ 
Sbjct: 314 LLDALKLANRTGFISHFVI 332

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 19/143 (13%)

Query: 135 MSPED----ADVHIVLGVLYNLSRQYDKAIESFQTA---------------LKLKPQDYS 175
           M+ E+    + +    G +Y    +Y +A+  ++                  K +    +
Sbjct: 4   MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 63

Query: 176 LWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL 235
               L          + AI +  +AL+L  N  +  +  G ++     +E +   + + L
Sbjct: 64  SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 123

Query: 236 AMNPKADNAWQYLRISLRYAGRY 258
            + P    A   L +  +   R 
Sbjct: 124 QLYPNNKAAKTQLAVCQQRIRRQ 146

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (87), Expect = 7e-04
 Identities = 13/110 (11%), Positives = 29/110 (26%), Gaps = 28/110 (25%)

Query: 138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAY 197
           E AD+ +    +Y L ++ + A +SF  A                               
Sbjct: 35  EAADLCVQAATIYRLRKELNLAGDSFLKAADY---------------------------- 66

Query: 198 QRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY 247
           Q+    +      +      + + G    +V     A+ +        + 
Sbjct: 67  QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 21/159 (13%), Positives = 45/159 (28%), Gaps = 20/159 (12%)

Query: 101 WLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDAD------VHIVLGVLYNLSR 154
           + R       +     +D   YA     +  A     +D          I    L  L  
Sbjct: 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG 172

Query: 155 QYDKAIESFQTALKLKPQDYSL-------WNKLGATQANSVQSADAILAYQRALDLKPNY 207
           QY +A + +   +K    +          + K G  Q  +  +  A    Q      PN+
Sbjct: 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232

Query: 208 VRAWANMG-------ISYANQGMYEESVRYYVRALAMNP 239
             +  +         ++  +     E  + +   + ++ 
Sbjct: 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 0.003
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 7/86 (8%)

Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNK-------LGATQANSVQSAD 192
           A+    LG +      Y       + AL+   +              L            
Sbjct: 5   AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64

Query: 193 AILAYQRALDLKPNYVRAWANMGISY 218
           A+L  ++ L+L P + RA  N+    
Sbjct: 65  ALLLTKKLLELDPEHQRANGNLKYFE 90

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.3 bits (79), Expect = 0.004
 Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 8/115 (6%)

Query: 138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ-DYSLWNKLGATQANSVQSADAILA 196
           +DA   +    L  L +Q         T    + + +Y+ W  + +T  N  +    +  
Sbjct: 7   KDAYEPLYPQQLEILRQQVVSEGGPTATI---QSRFNYA-WGLIKSTDVNDER--LGVKI 60

Query: 197 YQRALDLKPNYVR-AWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250
                    +  R     + I     G Y  + RY                   +
Sbjct: 61  LTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	100.0
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.97
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.96
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.95
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.95
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.93
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.91
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.9
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.86
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.85
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.84
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.83
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.83
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.82
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.82
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.81
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.81
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.8
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.78
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.77
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.77
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.77
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.76
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.75
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.74
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.73
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.73
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.73
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.72
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.71
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.7
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.7
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.69
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.69
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.65
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.54
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.51
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.48
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.47
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.44
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.41
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.26
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.24
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.89
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.85
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.78
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.71
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.7
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.68
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.3
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.86
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	89.87
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	87.32

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-39  Score=246.25  Aligned_cols=261  Identities=43%  Similarity=0.709  Sum_probs=240.6

Q ss_pred             CCCCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhh
Q 024618            1 MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS   80 (265)
Q Consensus         1 ~np~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   80 (265)
                      +||+...+..+.+|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.++.++++++|+++..+..
T Consensus        13 ~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   92 (323)
T d1fcha_          13 ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA   92 (323)
T ss_dssp             SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccc
Confidence            58888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc------------------hhhhhhhhchHHHHHHHHHHHhcCCC--CH
Q 024618           81 LGVSHTNELEQAAALKYLYGWLRHHPKYGTIA------------------PPELSDSLYYADVARLFVEAARMSPE--DA  140 (265)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~~~--~~  140 (265)
                      +|.++...|++++|+..+++++...|......                  ...+...+.+.++...+.++++.+|+  ++
T Consensus        93 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~  172 (323)
T d1fcha_          93 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP  172 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred             ccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccc
Confidence            99999999999999999999999998865433                  22345567889999999999999886  46


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN  220 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  220 (265)
                      .++..+|.++...|++++|+..+++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhcCCCCch-----------hHHHHHHHHHHhCCcccc
Q 024618          221 QGMYEESVRYYVRALAMNPKADN-----------AWQYLRISLRYAGRYPNR  261 (265)
Q Consensus       221 ~g~~~~A~~~~~~a~~~~~~~~~-----------~~~~l~~~~~~~~~~~~A  261 (265)
                      +|++++|+..|+++++++|++..           +|..++.++..+|+.+.+
T Consensus       253 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~  304 (323)
T d1fcha_         253 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  304 (323)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             CCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999887653           456688888888887654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-38  Score=243.59  Aligned_cols=255  Identities=22%  Similarity=0.231  Sum_probs=167.5

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      ++.+|..+++.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|
T Consensus         2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence            46788889999999999999999999999999999999999999999999999999999999998888888888888888


Q ss_pred             hHHHHHHHHHHHHhcCCCCC------------------------------------------------------------
Q 024618           90 EQAAALKYLYGWLRHHPKYG------------------------------------------------------------  109 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~------------------------------------------------------------  109 (265)
                      ++++|+..+..+....|...                                                            
T Consensus        82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence            88888877776665544332                                                            


Q ss_pred             ------------------------------------------CCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q 024618          110 ------------------------------------------TIA---PPELSDSLYYADVARLFVEAARMSPEDADVHI  144 (265)
Q Consensus       110 ------------------------------------------~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  144 (265)
                                                                ..+   +.++...|++++|+..++++....|.....+.
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  241 (388)
T d1w3ba_         162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG  241 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence                                                      111   22233333333333334443333444444444


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCc
Q 024618          145 VLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMY  224 (265)
Q Consensus       145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  224 (265)
                      .+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.++..+..+|.++...|++
T Consensus       242 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  321 (388)
T d1w3ba_         242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI  321 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCH
Confidence            45555555555555555555555555555555555555555555555555555555555555555555555566666666


Q ss_pred             HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618          225 EESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       225 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      ++|+..|+++++.+|+++.++..+|.++..+|++++|++.
T Consensus       322 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  361 (388)
T d1w3ba_         322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH  361 (388)
T ss_dssp             HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6666666666666666666666666666666666665543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=234.79  Aligned_cols=250  Identities=19%  Similarity=0.210  Sum_probs=224.6

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHH----------------------
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMM----------------------   65 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----------------------   65 (265)
                      ..++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+.                      
T Consensus        34 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (388)
T d1w3ba_          34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVA  113 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence            3467788999999999999999999999999988888888888877777776655554                      


Q ss_pred             --------------------------------------------------------------------------------
Q 024618           66 --------------------------------------------------------------------------------   65 (265)
Q Consensus        66 --------------------------------------------------------------------------------   65 (265)
                                                                                                      
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  193 (388)
T d1w3ba_         114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE  193 (388)
T ss_dssp             HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHH
Confidence                                                                                            


Q ss_pred             HHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHH
Q 024618           66 RAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADV  142 (265)
Q Consensus        66 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  142 (265)
                      ++++.+|+++.++..+|.++...|++++|+..++++....|.....+   +.++...|++++|+..++++++.+|+++.+
T Consensus       194 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  273 (388)
T d1w3ba_         194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA  273 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred             HHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            44445566666777777888888888888888888888888776655   889999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC
Q 024618          143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG  222 (265)
Q Consensus       143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  222 (265)
                      +..+|.++...|++++|+..+++++...|.++..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|
T Consensus       274 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  353 (388)
T d1w3ba_         274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618          223 MYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR  257 (265)
Q Consensus       223 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  257 (265)
                      ++++|+.+|+++++++|+++.++.++|.+|.++||
T Consensus       354 ~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         354 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999986

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-33  Score=210.24  Aligned_cols=225  Identities=20%  Similarity=0.223  Sum_probs=204.5

Q ss_pred             hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhh
Q 024618           41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELS  117 (265)
Q Consensus        41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~  117 (265)
                      ....+..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.++++.+|++...+   +.++.
T Consensus        19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   98 (323)
T d1fcha_          19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT   98 (323)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccc
Confidence            345678999999999999999999999999999999999999999999999999999999999999988776   88999


Q ss_pred             hhhchHHHHHHHHHHHhcCCCCHHHH---------------HHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHH
Q 024618          118 DSLYYADVARLFVEAARMSPEDADVH---------------IVLGVLYNLSRQYDKAIESFQTALKLKPQD--YSLWNKL  180 (265)
Q Consensus       118 ~~~~~~~a~~~~~~~~~~~~~~~~~~---------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l  180 (265)
                      ..|++++|+..+++++...|......               ......+...+.+.+|+..+.++++.+|+.  +.++..+
T Consensus        99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l  178 (323)
T d1fcha_          99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  178 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence            99999999999999999988753211               112233456678899999999999998875  6778999


Q ss_pred             HHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccc
Q 024618          181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPN  260 (265)
Q Consensus       181 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  260 (265)
                      |.++...|++++|+..+++++..+|+++.+|..+|.++..+|++++|+..|+++++++|+++.++..+|.++..+|++++
T Consensus       179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  258 (323)
T d1fcha_         179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE  258 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q 024618          261 RGDIF  265 (265)
Q Consensus       261 A~~~~  265 (265)
                      |++.|
T Consensus       259 A~~~~  263 (323)
T d1fcha_         259 AVEHF  263 (323)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-28  Score=185.24  Aligned_cols=242  Identities=14%  Similarity=0.125  Sum_probs=202.8

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEND-DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE   90 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   90 (265)
                      ..|.++.+.+.+++|+..++++++.+|++..+|..+|.++...| ++++|+.+++++++.+|++..+|..+|.++...|+
T Consensus        48 ~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~  127 (315)
T d2h6fa1          48 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD  127 (315)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhcc
Confidence            45778889999999999999999999999999999999999877 59999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC------HHHHHH
Q 024618           91 QAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ------YDKAIE  161 (265)
Q Consensus        91 ~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~A~~  161 (265)
                      +++|+..+.++++.+|++...+   +.++...|++++|+..++++++++|.+..+|..+|.++...+.      +++|+.
T Consensus       128 ~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~  207 (315)
T d2h6fa1         128 PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ  207 (315)
T ss_dssp             CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHH
Confidence            9999999999999999998887   8889999999999999999999999999999999999887766      578999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc--hhhHHHHHHHHHhc--CCcHHHHHHHHHHHh-
Q 024618          162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY--VRAWANMGISYANQ--GMYEESVRYYVRALA-  236 (265)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~-  236 (265)
                      .+.++++.+|++..+|..++.++...| .+++...+++++++.|..  +.++..++.++...  +..+.+...++++++ 
T Consensus       208 ~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l  286 (315)
T d2h6fa1         208 YTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL  286 (315)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            999999999999999999998865544 678888888888887764  44556677776543  444444555544433 


Q ss_pred             -------cCCCCchhHHHHHHHHHH
Q 024618          237 -------MNPKADNAWQYLRISLRY  254 (265)
Q Consensus       237 -------~~~~~~~~~~~l~~~~~~  254 (265)
                             .+|-....|..++..+..
T Consensus       287 ~~~l~~~~DpiR~~yw~~~~~~l~~  311 (315)
T d2h6fa1         287 CEILAKEKDTIRKEYWRYIGRSLQS  311 (315)
T ss_dssp             HHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence                   355444567667666543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-29  Score=189.21  Aligned_cols=225  Identities=11%  Similarity=0.106  Sum_probs=201.6

Q ss_pred             hCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh-hHHHHHHHHHHHHhcCCCCCCCc--
Q 024618           36 KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL-EQAAALKYLYGWLRHHPKYGTIA--  112 (265)
Q Consensus        36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~--  112 (265)
                      .+|+..+++..+|.++...+.+++|+..++++++++|++..+|..+|.++...| ++++|+..++++++.+|++...+  
T Consensus        38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~  117 (315)
T d2h6fa1          38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  117 (315)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            345667788899999999999999999999999999999999999999999887 59999999999999999999888  


Q ss_pred             -hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC--
Q 024618          113 -PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ--  189 (265)
Q Consensus       113 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  189 (265)
                       +.++...|++++|+..+.++++.+|++..+|..+|.++...|++++|+..++++++++|.+..+|..+|.++...+.  
T Consensus       118 ~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc
Confidence             99999999999999999999999999999999999999999999999999999999999999999999999888776  


Q ss_pred             ----cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHh--CCcccc
Q 024618          190 ----SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD--NAWQYLRISLRYA--GRYPNR  261 (265)
Q Consensus       190 ----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~--~~~~~A  261 (265)
                          +++|+..+.++++.+|++..+|..++.++...| ..++...+++++++.|+..  .++..++.++...  ++.+.+
T Consensus       198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~  276 (315)
T d2h6fa1         198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK  276 (315)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence                579999999999999999999999999876554 6889999999999888754  4455677776543  444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1.1e-27  Score=182.22  Aligned_cols=236  Identities=8%  Similarity=-0.069  Sum_probs=206.5

Q ss_pred             HcCC-hHHHHHHHHHHHHhCCCChHHHHHHHHHHhh----------cCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618           19 RKGL-LSEAVLALEAEVLKNPENSEGWRLLGIAHAE----------NDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN   87 (265)
Q Consensus        19 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   87 (265)
                      ..+. .++|+.+++++++.+|++..+|..++.++..          .|++++|+.+++++++.+|+++.++..+|.++..
T Consensus        40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence            3444 4899999999999999999998777666443          4558999999999999999999999999988877


Q ss_pred             hh--hHHHHHHHHHHHHhcCCCCCCCc----hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH---
Q 024618           88 EL--EQAAALKYLYGWLRHHPKYGTIA----PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDK---  158 (265)
Q Consensus        88 ~~--~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---  158 (265)
                      .+  ++++|+..+.+++..+|.....+    +..+...+.+++|+..++++++.+|.+..+|..+|.++...|++++   
T Consensus       120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence            65  48999999999999999887665    6788889999999999999999999999999999999998887653   


Q ss_pred             ---------------------------HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH
Q 024618          159 ---------------------------AIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW  211 (265)
Q Consensus       159 ---------------------------A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  211 (265)
                                                 +...+.+++...|.++..+..+|.++...+++.+|+..+.+++..+|.+..++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  279 (334)
T d1dcea1         200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI  279 (334)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHH
Confidence                                       44445555566666667777888899999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618          212 ANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY  254 (265)
Q Consensus       212 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  254 (265)
                      ..+|.++...|++++|+++|+++++++|.....|..|+..+..
T Consensus       280 ~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         280 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999887763

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=9.4e-27  Score=170.79  Aligned_cols=224  Identities=14%  Similarity=0.014  Sum_probs=180.9

Q ss_pred             cCChHHHHHHHHHHHHhCC----CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHH
Q 024618           20 KGLLSEAVLALEAEVLKNP----ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL   95 (265)
Q Consensus        20 ~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~   95 (265)
                      .++.+.|+..+++++...+    ....+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|+
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence            3456678888888887543    334588999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024618           96 KYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ  172 (265)
Q Consensus        96 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  172 (265)
                      ..|+++++.+|+++..+   |.++...|++++|+..++++++.+|.+......++......+..+.+...........+.
T Consensus        92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE  171 (259)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence            99999999999988776   888999999999999999999999999988888888888888776666666666555554


Q ss_pred             CHHHHHHHHHHHH----hhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhH
Q 024618          173 DYSLWNKLGATQA----NSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW  245 (265)
Q Consensus       173 ~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  245 (265)
                      .+. +. +...+.    ..+..+.+...+.......|....+++.+|.++...|++++|+.+|++++..+|++...+
T Consensus       172 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  246 (259)
T d1xnfa_         172 QWG-WN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH  246 (259)
T ss_dssp             STH-HH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred             hhh-hh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            432 11 112211    233455566666666666778888999999999999999999999999999999875443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.3e-25  Score=164.65  Aligned_cols=199  Identities=14%  Similarity=0.003  Sum_probs=161.4

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      .++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  118 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG  118 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----HccCHHHHHH
Q 024618           89 LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYN----LSRQYDKAIE  161 (265)
Q Consensus        89 ~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~  161 (265)
                      |++++|+..++++++.+|++....   +......+....+...........+.....  .+...+.    ..+..+.+..
T Consensus       119 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  196 (259)
T d1xnfa_         119 GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW--NIVEFYLGNISEQTLMERLKA  196 (259)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH--HHHHHHTTSSCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhh--hHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999876544   444444444444545555555555544321  1122221    2234555566


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh
Q 024618          162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR  209 (265)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  209 (265)
                      .+.......|....+++.+|.++...|++++|+..|++++..+|++..
T Consensus       197 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  244 (259)
T d1xnfa_         197 DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  244 (259)
T ss_dssp             HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence            666666667777889999999999999999999999999999998643

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.3e-22  Score=154.81  Aligned_cols=254  Identities=11%  Similarity=-0.053  Sum_probs=209.5

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHHHh
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENS-----EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEVLL   79 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~   79 (265)
                      ..+|.+++..|++++|+..+++++...|.+.     .++..+|.++...|++++|+..++++++..+..      ..++.
T Consensus        16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   95 (366)
T d1hz4a_          16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   95 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            3468999999999999999999999998864     477889999999999999999999999865432      45778


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC-----------chhhhhhhhchHHHHHHHHHHHhcCCCC-----HHHH
Q 024618           80 SLGVSHTNELEQAAALKYLYGWLRHHPKYGTI-----------APPELSDSLYYADVARLFVEAARMSPED-----ADVH  143 (265)
Q Consensus        80 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~  143 (265)
                      .++.++...|++..+...+.+++...+.....           .+.++...|+++.+...+.++....+..     ...+
T Consensus        96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  175 (366)
T d1hz4a_          96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  175 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence            88999999999999999999998764432211           1678889999999999999999876542     4667


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc----hhhHH
Q 024618          144 IVLGVLYNLSRQYDKAIESFQTALKLKPQD-------YSLWNKLGATQANSVQSADAILAYQRALDLKPNY----VRAWA  212 (265)
Q Consensus       144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~  212 (265)
                      ...+..+...+++.++...+.++....+..       ..++..++.++...|++++|...+++++...|.+    ...+.
T Consensus       176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  255 (366)
T d1hz4a_         176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  255 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            788889999999999999999888764322       3567778889999999999999999998876654    34566


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHhc------CCCCchhHHHHHHHHHHhCCccccccc
Q 024618          213 NMGISYANQGMYEESVRYYVRALAM------NPKADNAWQYLRISLRYAGRYPNRGDI  264 (265)
Q Consensus       213 ~l~~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~  264 (265)
                      .+|.++...|++++|+..+++++..      .|....++..+|.++...|++++|++.
T Consensus       256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  313 (366)
T d1hz4a_         256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV  313 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            7899999999999999999998853      344567888999999999999998764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.3e-23  Score=159.51  Aligned_cols=215  Identities=13%  Similarity=-0.038  Sum_probs=184.0

Q ss_pred             HhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhh----------hhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhh
Q 024618           51 HAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVS----------HTNELEQAAALKYLYGWLRHHPKYGTIA---PPELS  117 (265)
Q Consensus        51 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~  117 (265)
                      ....+..++|+.+++++++.+|++..+|..++.+          +...|++++|+..++++++.+|++...+   +.++.
T Consensus        39 ~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~  118 (334)
T d1dcea1          39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (334)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH
Confidence            3344455899999999999999999887655544          4455678999999999999999998876   55555


Q ss_pred             hhh--chHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH--
Q 024618          118 DSL--YYADVARLFVEAARMSPEDADVH-IVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD--  192 (265)
Q Consensus       118 ~~~--~~~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--  192 (265)
                      ..+  ++++|+..+++++..+|.+..++ ...|.++...+.+++|+..++++++.+|.+..+|..+|.++...|++++  
T Consensus       119 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~  198 (334)
T d1dcea1         119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG  198 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHH
Confidence            544  58999999999999999998876 4677889999999999999999999999999999999999998887653  


Q ss_pred             ----------------------------HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618          193 ----------------------------AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA  244 (265)
Q Consensus       193 ----------------------------A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  244 (265)
                                                  +...+.+++...|.+...+..+|.++...|++.+|+..+.++++.+|++..+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  278 (334)
T d1dcea1         199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLT  278 (334)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHH
Confidence                                        4455566666677777778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCcccccccC
Q 024618          245 WQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       245 ~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      +..+|.++..+|++++|+++|
T Consensus       279 ~~~l~~~~~~~~~~~eA~~~~  299 (334)
T d1dcea1         279 IILLMRALDPLLYEKETLQYF  299 (334)
T ss_dssp             HHHHHHHHCTGGGHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999998754

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.8e-24  Score=169.78  Aligned_cols=231  Identities=12%  Similarity=0.035  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhc
Q 024618           25 EAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRH  104 (265)
Q Consensus        25 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  104 (265)
                      +|+++|++++...|+.++++..+|.++...|++++|   |++++..+|+....+...+.+.  ...+..+++.+++..+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            789999999999999999999999999999999886   8999999998777654433322  33456777888877765


Q ss_pred             CCCCCCCc------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024618          105 HPKYGTIA------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWN  178 (265)
Q Consensus       105 ~~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  178 (265)
                      ........      +.+....+.++.++..+.+.+..+|.+...+..+|..+...|++++|+..+.+++..+|  ..++.
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~  156 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLV  156 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHH
Confidence            43332222      34455677888888888888899999999999999999999999999999999998765  46889


Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCc
Q 024618          179 KLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY  258 (265)
Q Consensus       179 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  258 (265)
                      .+|.++...|++++|+.+|++++.++|+++.+++.+|.++...|++.+|+.+|.+++...|..+.++.+|+.++.+..+.
T Consensus       157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887766


Q ss_pred             cccc
Q 024618          259 PNRG  262 (265)
Q Consensus       259 ~~A~  262 (265)
                      .++.
T Consensus       237 ~~~~  240 (497)
T d1ya0a1         237 RDEV  240 (497)
T ss_dssp             CCCC
T ss_pred             hhhh
Confidence            5543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.3e-21  Score=122.51  Aligned_cols=112  Identities=19%  Similarity=0.204  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ  221 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  221 (265)
                      -+...|..++..|++++|+..|+++++.+|+++.+|..+|.++..+|++++|+..++++++++|+++.+|+.+|.++..+
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024618          222 GMYEESVRYYVRALAMNPKADNAWQYLRISLR  253 (265)
Q Consensus       222 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  253 (265)
                      |++++|+..|+++++.+|+++.++..++.+..
T Consensus        85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999887753

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.2e-19  Score=134.42  Aligned_cols=221  Identities=11%  Similarity=0.016  Sum_probs=194.4

Q ss_pred             hHHHHHHHHHHHHhCCCChHHHHHHHHHHhh--------------cCcHHHHHHHHHHHHhc-CCChHHHHhhhhhhhhh
Q 024618           23 LSEAVLALEAEVLKNPENSEGWRLLGIAHAE--------------NDDDQQAIAAMMRAHEA-EPTNLEVLLSLGVSHTN   87 (265)
Q Consensus        23 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~   87 (265)
                      .+.+..+|++++...|.++..|+..+.....              .+..++|...|+++++. .|.+...|...+.....
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~  111 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            4568889999999999999999987776543              33468899999999985 78888899999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCCCCC-c---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHH
Q 024618           88 ELEQAAALKYLYGWLRHHPKYGTI-A---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYN-LSRQYDKAIES  162 (265)
Q Consensus        88 ~~~~~~A~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~  162 (265)
                      .|+++.|...|+++++..|.+... +   +......+.++.|...|+++++..|.....+...+.... ..|+.+.|...
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i  191 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence            999999999999999999887543 3   778888999999999999999999999999999887754 46899999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch----hhHHHHHHHHHhcCCcHHHHHHHHHHHhcC
Q 024618          163 FQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV----RAWANMGISYANQGMYEESVRYYVRALAMN  238 (265)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  238 (265)
                      |++++..+|+++..|...+......|+++.|...|++++...|.++    ..|..........|+.+.+.+.++++.+..
T Consensus       192 ~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~  271 (308)
T d2onda1         192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999877554    367777888888999999999999999998


Q ss_pred             CCCch
Q 024618          239 PKADN  243 (265)
Q Consensus       239 ~~~~~  243 (265)
                      |+...
T Consensus       272 ~~~~~  276 (308)
T d2onda1         272 REEYE  276 (308)
T ss_dssp             TTTTS
T ss_pred             ccccc
Confidence            87654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.8e-19  Score=137.15  Aligned_cols=253  Identities=10%  Similarity=-0.021  Sum_probs=203.8

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC--------ChH
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPEN------SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP--------TNL   75 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~   75 (265)
                      +..+|.++...|++++|+..+++++...|..      ..++..++.++...|++..|...+.+++...+        ...
T Consensus        54 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~  133 (366)
T d1hz4a_          54 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE  133 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHH
Confidence            4567999999999999999999998865432      34677889999999999999999999987532        234


Q ss_pred             HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc--------hhhhhhhhchHHHHHHHHHHHhcCCC-------CH
Q 024618           76 EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA--------PPELSDSLYYADVARLFVEAARMSPE-------DA  140 (265)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~  140 (265)
                      ..+..+|.++...|+++.+...+.++....+......        +..+...+.+.++...+.++....+.       ..
T Consensus       134 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~  213 (366)
T d1hz4a_         134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS  213 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred             HHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH
Confidence            5777899999999999999999999999887755433        66677888899999988888765332       23


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhc------CCcchhh
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD----YSLWNKLGATQANSVQSADAILAYQRALDL------KPNYVRA  210 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~  210 (265)
                      .++..++.++...|++++|...+++++...|.+    ...+..+|.++...|++++|+..+++++..      .|....+
T Consensus       214 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  293 (366)
T d1hz4a_         214 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN  293 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHH
Confidence            567788999999999999999999999887655    356778999999999999999999999854      3555778


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC---------chhHHHHHHHHHHhCCccccc
Q 024618          211 WANMGISYANQGMYEESVRYYVRALAMNPKA---------DNAWQYLRISLRYAGRYPNRG  262 (265)
Q Consensus       211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~  262 (265)
                      +..+|.++...|++++|++.+++++++.+..         ......+...+...++.+++.
T Consensus       294 ~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e  354 (366)
T d1hz4a_         294 LLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE  354 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence            9999999999999999999999999875432         223344555566667776654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3e-19  Score=124.01  Aligned_cols=139  Identities=12%  Similarity=0.147  Sum_probs=114.2

Q ss_pred             hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHH
Q 024618          117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA  196 (265)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  196 (265)
                      ...|++++|++.|.+   +.|.++.+++++|.++...|++++|+..|+++++++|+++.+|.++|.++..+|++++|+..
T Consensus        16 ~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~   92 (192)
T d1hh8a_          16 ADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD   92 (192)
T ss_dssp             HHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHH
Confidence            444445555555543   34556889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcc----------------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCc
Q 024618          197 YQRALDLKPNY----------------VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY  258 (265)
Q Consensus       197 ~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  258 (265)
                      |++++...+.+                ..+++++|.++..+|++++|++.+.+++++.|+........+......+..
T Consensus        93 ~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~~~~  170 (192)
T d1hh8a_          93 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKL  170 (192)
T ss_dssp             HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHTTCC
T ss_pred             HHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhhh
Confidence            99999765432                367889999999999999999999999999998666555555544444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.4e-19  Score=122.13  Aligned_cols=110  Identities=16%  Similarity=0.254  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC
Q 024618          143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG  222 (265)
Q Consensus       143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  222 (265)
                      +...|..+++.|+|++|+..|+++++.+|+++.+|..+|.++..+|++++|+..|+++++++|+++.++..+|.++..+|
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            44567777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CcHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 024618          223 MYEESVRYYVRALAMNPKADNAWQYLRISL  252 (265)
Q Consensus       223 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  252 (265)
                      ++++|+..+++++.++|+++.++..++.+.
T Consensus        93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          93 KFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            777777777777777777777766666554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.5e-19  Score=115.16  Aligned_cols=107  Identities=17%  Similarity=0.117  Sum_probs=98.7

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (265)
                      |..+...|++++|+..|.++++.+|.++.++..+|.++...|++++|+..+.++++++|+++.+|+.+|.++..+|++++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence            45566777778888888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618          193 AILAYQRALDLKPNYVRAWANMGISYA  219 (265)
Q Consensus       193 A~~~~~~~~~~~~~~~~~~~~l~~~~~  219 (265)
                      |+..|+++++.+|+++.++..++.+..
T Consensus        90 A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          90 AKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            999999999999999999999887753

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=3.7e-20  Score=137.44  Aligned_cols=200  Identities=13%  Similarity=0.071  Sum_probs=138.6

Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHhcC------CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc------
Q 024618           45 RLLGIAHAENDDDQQAIAAMMRAHEAE------PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA------  112 (265)
Q Consensus        45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------  112 (265)
                      ...|.+|...|++++|+++|.+++++.      +....++..+|.+|...|++++|+..+++++.+.+......      
T Consensus        41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  120 (290)
T d1qqea_          41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK  120 (290)
T ss_dssp             HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence            334677777777777777777777752      22245677777777777777777777777777665544322      


Q ss_pred             ---hhhhh-hhhchHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-------H
Q 024618          113 ---PPELS-DSLYYADVARLFVEAARMSPE------DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY-------S  175 (265)
Q Consensus       113 ---~~~~~-~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~  175 (265)
                         +.++. ..|++++|+..+++++.+.+.      ...++..+|.++...|++++|+..|++++...+..+       .
T Consensus       121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~  200 (290)
T d1qqea_         121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD  200 (290)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred             HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence               33342 357777777777777665321      245688899999999999999999999998877663       4


Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh-----hHHHHHHHHHh--cCCcHHHHHHHHHHHhcCCCCchh
Q 024618          176 LWNKLGATQANSVQSADAILAYQRALDLKPNYVR-----AWANMGISYAN--QGMYEESVRYYVRALAMNPKADNA  244 (265)
Q Consensus       176 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~  244 (265)
                      .+...|.++...|+++.|...++++++.+|..+.     ....+..++..  .+.+++|+..|.++.+++|.....
T Consensus       201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~  276 (290)
T d1qqea_         201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI  276 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            5678888889999999999999999998886543     33445555544  346889999998877776543333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.82  E-value=1e-19  Score=114.95  Aligned_cols=102  Identities=45%  Similarity=0.700  Sum_probs=97.9

Q ss_pred             CCCCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhh
Q 024618            1 MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS   80 (265)
Q Consensus         1 ~np~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   80 (265)
                      .||+...+..+..|..+++.|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+++++++++|+++.++..
T Consensus        10 ~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   89 (112)
T d1hxia_          10 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA   89 (112)
T ss_dssp             SCGGGGCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHH
Confidence            36777778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHH
Q 024618           81 LGVSHTNELEQAAALKYLYGWL  102 (265)
Q Consensus        81 la~~~~~~~~~~~A~~~~~~~~  102 (265)
                      +|.++...|++++|++.+++.+
T Consensus        90 la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          90 LAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999999875

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.5e-19  Score=121.97  Aligned_cols=166  Identities=16%  Similarity=0.037  Sum_probs=131.9

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      ++.+|..+...|+|++|+..|.++   .|.++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+|.++..+|
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence            457899999999999999999864   56688999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618           90 EQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL  169 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  169 (265)
                      ++++|+..|++++...+.+....-.   ..|.            ........+++.+|.++...|++++|++.+.+++..
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~---~~~~------------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYK---ILGL------------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECG---GGTB------------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHH---Hhhh------------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            9999999999999887765432100   0000            001122467889999999999999999999999998


Q ss_pred             CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC
Q 024618          170 KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP  205 (265)
Q Consensus       170 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  205 (265)
                      .|+..            .+..+.|+..+.+.....|
T Consensus       150 ~~~~~------------~~~~~~Al~~~~~~~~~~~  173 (192)
T d1hh8a_         150 KSEPR------------HSKIDKAMECVWKQKLYEP  173 (192)
T ss_dssp             CCSGG------------GGHHHHHHHHHHTTCCCCC
T ss_pred             CCCcc------------hHHHHHHHHHHHhhhhCCc
Confidence            88742            2334556665555544444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=3.2e-18  Score=128.01  Aligned_cols=207  Identities=9%  Similarity=-0.020  Sum_probs=178.0

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHhhhhhhhhh--------------hhhHHHHHHHHHHHHhc-CCCCCCCc---hhhhhh
Q 024618           57 DQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN--------------ELEQAAALKYLYGWLRH-HPKYGTIA---PPELSD  118 (265)
Q Consensus        57 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--------------~~~~~~A~~~~~~~~~~-~~~~~~~~---~~~~~~  118 (265)
                      .+.+..+|++++...|.++.+|...+.....              .+..++|...|+++++. .|.+...+   +.....
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~  111 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            4667889999999999999999888775543              34568899999999985 56655444   788889


Q ss_pred             hhchHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-hhcCcHHHHHH
Q 024618          119 SLYYADVARLFVEAARMSPEDA-DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQA-NSVQSADAILA  196 (265)
Q Consensus       119 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~  196 (265)
                      .|+++.|...+++++...|.+. .+|..++....+.|+++.|...|.++++..|.+...+...+.... ..|+.+.|...
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i  191 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence            9999999999999999999764 578999999999999999999999999999999999999888754 46899999999


Q ss_pred             HHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhCCcccccc
Q 024618          197 YQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD----NAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       197 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      |++++...|.++..|...+......|+++.|...|+++++..|.++    ..|..........|+.+.+.+
T Consensus       192 ~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~  262 (308)
T d2onda1         192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK  262 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999999999887654    367777777777788766554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.5e-19  Score=126.93  Aligned_cols=100  Identities=19%  Similarity=0.231  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN  220 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  220 (265)
                      ..+...|..++..|++++|+..|++++.++|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|+.+|.++..
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            33445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCcHHHHHHHHHHHhcCCC
Q 024618          221 QGMYEESVRYYVRALAMNPK  240 (265)
Q Consensus       221 ~g~~~~A~~~~~~a~~~~~~  240 (265)
                      +|++++|+..|+++++++|+
T Consensus        85 l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          85 MESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCcc
Confidence            55555555555555555543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.3e-18  Score=117.35  Aligned_cols=119  Identities=14%  Similarity=0.162  Sum_probs=103.8

Q ss_pred             hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618          113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD  192 (265)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  192 (265)
                      |..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~e   96 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA   96 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHH
Confidence            44556677777777888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHH--hcCCcHHHHHHH
Q 024618          193 AILAYQRALDLKPNYVRAWANMGISYA--NQGMYEESVRYY  231 (265)
Q Consensus       193 A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~  231 (265)
                      |+..+++++.++|+++.++..++.+..  ..+.+++|+...
T Consensus        97 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~  137 (159)
T d1a17a_          97 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD  137 (159)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            999999999999999999888877754  344566666543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.5e-20  Score=149.47  Aligned_cols=202  Identities=10%  Similarity=0.036  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc-hhhhhhhhchHHHHHHHHHHHhcCC
Q 024618           59 QAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA-PPELSDSLYYADVARLFVEAARMSP  137 (265)
Q Consensus        59 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~  137 (265)
                      +|+++|++|+++.|+.++++..+|.++...+++++|   |++++..+|+..... .........+..+++.+++..+...
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~~   80 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRA   80 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence            789999999999999999999999999999999887   889998888654332 2222223446677888888776542


Q ss_pred             --CCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHH
Q 024618          138 --EDA-DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM  214 (265)
Q Consensus       138 --~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  214 (265)
                        +.. .....++.+....+.|+.|+..+.+++..+|++...+..+|..+...|++++|+..+.+++..+|.  .++..+
T Consensus        81 ~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~L  158 (497)
T d1ya0a1          81 NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHL  158 (497)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH--HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHH
Confidence              222 223334566677889999999999999999999999999999999999999999999999887664  688899


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618          215 GISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF  265 (265)
Q Consensus       215 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  265 (265)
                      |.++...|++++|+.+|+++++++|+++.++..||.++...|+..+|+..|
T Consensus       159 G~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y  209 (497)
T d1ya0a1         159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY  209 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.1e-18  Score=129.44  Aligned_cols=201  Identities=11%  Similarity=0.011  Sum_probs=157.5

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCC------CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHH
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNP------ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEV   77 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~   77 (265)
                      +.+.|.++...|+|++|+..|.++++..+      ....++..+|.+|...|++++|++++++++++.+..      ..+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            45678999999999999999999998642      224578899999999999999999999999875543      567


Q ss_pred             Hhhhhhhhhh-hhhHHHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhchHHHHHHHHHHHhcCCCCH-------
Q 024618           78 LLSLGVSHTN-ELEQAAALKYLYGWLRHHPKYGTIA---------PPELSDSLYYADVARLFVEAARMSPEDA-------  140 (265)
Q Consensus        78 ~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------  140 (265)
                      +..+|.++.. .|++++|+..+++++++.+......         +.++...|++++|+..+++++...|...       
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            8888888865 6999999999999998755433211         8899999999999999999999877653       


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHh--hcCcHHHHHHHHHHHhcCCcchhh
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYS-----LWNKLGATQAN--SVQSADAILAYQRALDLKPNYVRA  210 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~  210 (265)
                      ..+...+.++...|+++.|...++++++.+|..+.     ....+..++..  .+.+++|+..|+++.+++|.....
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~  276 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI  276 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            45678888999999999999999999999886543     33444445444  356899999999888777654443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.2e-18  Score=122.21  Aligned_cols=105  Identities=16%  Similarity=0.109  Sum_probs=99.1

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN   87 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   87 (265)
                      ..+...|..++..|+|++|+..|++++..+|.++.+|..+|.+|...|++++|+..|+++++++|+++.+|+.+|.++..
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCCCCCc
Q 024618           88 ELEQAAALKYLYGWLRHHPKYGTIA  112 (265)
Q Consensus        88 ~~~~~~A~~~~~~~~~~~~~~~~~~  112 (265)
                      +|++++|+..|++++++.|+....+
T Consensus        85 l~~~~~A~~~~~~al~l~p~~~~~~  109 (201)
T d2c2la1          85 MESYDEAIANLQRAYSLAKEQRLNF  109 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHH
Confidence            9999999999999999888765544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.1e-18  Score=115.02  Aligned_cols=119  Identities=15%  Similarity=0.187  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---------------YSLWNKLGATQANSVQSADAILAYQRALDLK  204 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  204 (265)
                      ...+...|..++..|++++|+..|++++...|..               ..++.++|.+|.+.|++++|+..+++++.++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            3445667788888888888888888888776643               2456678888888888888888888888888


Q ss_pred             CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCc
Q 024618          205 PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY  258 (265)
Q Consensus       205 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  258 (265)
                      |+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....++.
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888887776655443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.4e-18  Score=109.78  Aligned_cols=111  Identities=12%  Similarity=0.016  Sum_probs=97.7

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh---hcCcHHHHHHHHHHHhcCCcc--hhhHHHHHHHHH
Q 024618          145 VLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN---SVQSADAILAYQRALDLKPNY--VRAWANMGISYA  219 (265)
Q Consensus       145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~  219 (265)
                      .++..+...+++++|.+.|++++..+|.++.+++++|.++..   .+++++|+..+++++..+|.+  ..+++++|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            466778888999999999999999999999999999999986   455667999999999988765  458999999999


Q ss_pred             hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 024618          220 NQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYA  255 (265)
Q Consensus       220 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  255 (265)
                      ++|++++|+.+|+++++++|++..+...++.+..+.
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999988888776654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.76  E-value=7.8e-18  Score=106.20  Aligned_cols=94  Identities=21%  Similarity=0.243  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618          142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ  221 (265)
Q Consensus       142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  221 (265)
                      ..+.+|..+.+.|++++|+..+++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHH
Q 024618          222 GMYEESVRYYVRAL  235 (265)
Q Consensus       222 g~~~~A~~~~~~a~  235 (265)
                      |++++|++.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999875

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.75  E-value=1.9e-17  Score=110.48  Aligned_cols=117  Identities=17%  Similarity=0.162  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD----------------YSLWNKLGATQANSVQSADAILAYQRALDLK  204 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  204 (265)
                      ..+...|..++..|++.+|+..|++++...+..                ..++.++|.+|.++|++++|+..++++++++
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~   97 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID   97 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence            345667888899999999999999999865533                2467889999999999999999999999999


Q ss_pred             CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618          205 PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR  257 (265)
Q Consensus       205 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  257 (265)
                      |.++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+..++++
T Consensus        98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988876643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.6e-16  Score=106.87  Aligned_cols=88  Identities=19%  Similarity=0.167  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN  220 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  220 (265)
                      .++.++|.+|...|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+...
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cCCcHHHH
Q 024618          221 QGMYEESV  228 (265)
Q Consensus       221 ~g~~~~A~  228 (265)
                      .+...+..
T Consensus       143 ~~~~~~~e  150 (170)
T d1p5qa1         143 IRRQLARE  150 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77665543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=1.3e-17  Score=113.43  Aligned_cols=119  Identities=15%  Similarity=0.208  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618          143 HIVLGVLYNLSRQYDKAIESFQTALKL----------------KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN  206 (265)
Q Consensus       143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  206 (265)
                      +...|..+...|++.+|+..|+++++.                .|....++.++|.++.++|++++|+..++++++++|+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            456688888889999999999888754                3455678899999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccc
Q 024618          207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNR  261 (265)
Q Consensus       207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  261 (265)
                      ++.+|+.+|.++..+|++++|+..|+++++++|++..+...++.+..+.....++
T Consensus       110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988776655443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=1.6e-17  Score=113.06  Aligned_cols=96  Identities=13%  Similarity=0.142  Sum_probs=87.1

Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHH
Q 024618          133 ARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA  212 (265)
Q Consensus       133 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  212 (265)
                      ....|....++.++|.++...|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+..
T Consensus        70 ~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~  149 (169)
T d1ihga1          70 AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA  149 (169)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            34456678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcHHHH
Q 024618          213 NMGISYANQGMYEESV  228 (265)
Q Consensus       213 ~l~~~~~~~g~~~~A~  228 (265)
                      .++.+........++.
T Consensus       150 ~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         150 ELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999887776665543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.73  E-value=5e-17  Score=110.31  Aligned_cols=119  Identities=14%  Similarity=0.164  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---------------YSLWNKLGATQANSVQSADAILAYQRALDLK  204 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  204 (265)
                      ...+...|..++..|++.+|+..|++++...|..               ..++.++|.++..+|++++|+..+++++.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            4456677888888888888888888888654332               2456778888888888888888888888888


Q ss_pred             CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCc
Q 024618          205 PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY  258 (265)
Q Consensus       205 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  258 (265)
                      |+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....+..
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            888888888888888888888888888888888888888888888777665543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.72  E-value=9.1e-18  Score=110.83  Aligned_cols=74  Identities=20%  Similarity=0.217  Sum_probs=47.1

Q ss_pred             hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024618          115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ----------YDKAIESFQTALKLKPQDYSLWNKLGATQ  184 (265)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  184 (265)
                      .+.+.+.+++|+..|+++++.+|+++.++..+|.++...++          +++|+..|+++++++|+++.+++++|.+|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            35566677777777777777777777777777777764433          34555555555555555555555555555


Q ss_pred             Hhhc
Q 024618          185 ANSV  188 (265)
Q Consensus       185 ~~~~  188 (265)
                      ..+|
T Consensus        86 ~~~g   89 (145)
T d1zu2a1          86 TSFA   89 (145)
T ss_dssp             HHHH
T ss_pred             HHcc
Confidence            5443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.71  E-value=3.5e-15  Score=108.90  Aligned_cols=223  Identities=16%  Similarity=0.172  Sum_probs=176.4

Q ss_pred             CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhh----cCcHHHHHHHHHHHHhcCCChHHHHhhhhh
Q 024618            8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAE----NDDDQQAIAAMMRAHEAEPTNLEVLLSLGV   83 (265)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~   83 (265)
                      ..++.+|..++..+++++|+++|+++.+.  .++.+++.+|.+|..    ..++..|..++..+....  ++.+...+|.
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~   78 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGN   78 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcccc
Confidence            46788999999999999999999999764  578999999999987    779999999999987644  6677777777


Q ss_pred             hhhh----hhhHHHHHHHHHHHHhcCCCCCCCc-hhhhh----hhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--
Q 024618           84 SHTN----ELEQAAALKYLYGWLRHHPKYGTIA-PPELS----DSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL--  152 (265)
Q Consensus        84 ~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--  152 (265)
                      ++..    ..+.+.|...++.+....+...... +..+.    .......+...+.+...  +.+...+..+|.++..  
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~  156 (265)
T d1ouva_          79 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGR  156 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTS
T ss_pred             ccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhccCC
Confidence            7654    4678899999999887655433222 22222    23445666777766554  4567888999999886  


Q ss_pred             --ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh----cC
Q 024618          153 --SRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN----SVQSADAILAYQRALDLKPNYVRAWANMGISYAN----QG  222 (265)
Q Consensus       153 --~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g  222 (265)
                        ..+...+...++.+.+  +.++.+.+.+|.++..    ..++++|+.+|+++.+..  ++.+++.+|.+|..    ..
T Consensus       157 ~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~  232 (265)
T d1ouva_         157 GTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTR  232 (265)
T ss_dssp             SSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSC
T ss_pred             Ccccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCcc
Confidence              4577788888888875  5689999999999987    678999999999998864  57899999999986    44


Q ss_pred             CcHHHHHHHHHHHhcCCC
Q 024618          223 MYEESVRYYVRALAMNPK  240 (265)
Q Consensus       223 ~~~~A~~~~~~a~~~~~~  240 (265)
                      ++++|+++|+++.+..+.
T Consensus       233 n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         233 NEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             CSTTHHHHHHHHHHHTCH
T ss_pred             CHHHHHHHHHHHHHCcCH
Confidence            899999999999987644

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.3e-16  Score=101.87  Aligned_cols=110  Identities=16%  Similarity=0.270  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh-------hHHH
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR-------AWAN  213 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~  213 (265)
                      ..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.++..+|++++|+..++++++++|.++.       ++..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            446688999999999999999999999999999999999999999999999999999999999888754       5666


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 024618          214 MGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS  251 (265)
Q Consensus       214 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  251 (265)
                      +|.++..++++++|+++|++++..+|+ ++....+..+
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~  121 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA  121 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence            788888899999999999999998775 5555544443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.70  E-value=5e-16  Score=105.26  Aligned_cols=97  Identities=20%  Similarity=0.220  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA  219 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  219 (265)
                      ..++.++|.++..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++.++|+++.+...++.+..
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  143 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK  143 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hcCCcHH-HHHHHHHHHh
Q 024618          220 NQGMYEE-SVRYYVRALA  236 (265)
Q Consensus       220 ~~g~~~~-A~~~~~~a~~  236 (265)
                      ..+.+.+ ..+.|.+.++
T Consensus       144 ~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         144 KAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHh
Confidence            7776543 4455555444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=1.1e-16  Score=105.47  Aligned_cols=112  Identities=13%  Similarity=0.242  Sum_probs=99.1

Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh----------cCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618          150 YNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANS----------VQSADAILAYQRALDLKPNYVRAWANMGISYA  219 (265)
Q Consensus       150 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  219 (265)
                      +.+.+.+++|+..|+++++++|+++.++..+|.++...          +.+++|+..|+++++++|+++.+++++|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            56678899999999999999999999999999998754          55689999999999999999999999999998


Q ss_pred             hcCC-----------cHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccc
Q 024618          220 NQGM-----------YEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNR  261 (265)
Q Consensus       220 ~~g~-----------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  261 (265)
                      .+|+           +++|+++|+++++++|++..++..|+.+....+.+.++
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            8764           68999999999999999999999999887766655544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.69  E-value=9.7e-16  Score=102.10  Aligned_cols=82  Identities=21%  Similarity=0.258  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618          141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN  220 (265)
Q Consensus       141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  220 (265)
                      .++.++|.+|..+|++++|+..++++++++|.++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+..+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999888888765


Q ss_pred             cC
Q 024618          221 QG  222 (265)
Q Consensus       221 ~g  222 (265)
                      ++
T Consensus       148 l~  149 (153)
T d2fbna1         148 LK  149 (153)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.4e-17  Score=102.74  Aligned_cols=107  Identities=10%  Similarity=-0.005  Sum_probs=92.9

Q ss_pred             hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhhcC
Q 024618          115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS---RQYDKAIESFQTALKLKPQD--YSLWNKLGATQANSVQ  189 (265)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~  189 (265)
                      .+...+++++|.+.|++++..+|.++.+++++|.++...   +++++|+..+++++..+|.+  +.+++.+|.+|...|+
T Consensus         8 ~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~   87 (122)
T d1nzna_           8 ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE   87 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh
Confidence            445667788888889999999999999999999999864   45567999999999988765  4589999999999999


Q ss_pred             cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618          190 SADAILAYQRALDLKPNYVRAWANMGISYANQ  221 (265)
Q Consensus       190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  221 (265)
                      +++|+++|+++++++|++..+...++.+..+.
T Consensus        88 ~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          88 YEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999988888776554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.3e-16  Score=100.14  Aligned_cols=77  Identities=14%  Similarity=0.070  Sum_probs=53.2

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE   88 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   88 (265)
                      .+|..++..|+|++|+.+|+++++.+|+++.++..+|.++...|++++|+..++++++++|.++..+..+|.++..+
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            46777777777777777777777777777777777777777777777777777777777766655444444444333

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.65  E-value=1.3e-14  Score=105.83  Aligned_cols=216  Identities=18%  Similarity=0.140  Sum_probs=169.4

Q ss_pred             ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh----hhhHHHHHHHHHHHHhcCCCCCCCc-hh
Q 024618           40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN----ELEQAAALKYLYGWLRHHPKYGTIA-PP  114 (265)
Q Consensus        40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~-~~  114 (265)
                      ||.+++.+|..+...+++++|+++|+++.+.  .++.+++.||.+|..    ..++..|..+++.+........... +.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~   78 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN   78 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccc
Confidence            5789999999999999999999999999875  578899999999986    6689999999999887553222111 33


Q ss_pred             hhh----hhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024618          115 ELS----DSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL----SRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN  186 (265)
Q Consensus       115 ~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  186 (265)
                      .+.    .....+.|...++.+....+  ..+...++..+..    ......+...+.+...  +.++..+..+|.++..
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~  154 (265)
T d1ouva_          79 LYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDA  154 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhcc
Confidence            322    24577889999999987654  5666677766664    4457777777777655  5678899999999986


Q ss_pred             ----hcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh----cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH----
Q 024618          187 ----SVQSADAILAYQRALDLKPNYVRAWANMGISYAN----QGMYEESVRYYVRALAMNPKADNAWQYLRISLRY----  254 (265)
Q Consensus       187 ----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----  254 (265)
                          ..+...+..+++.+.+  +.++.+.+.+|.++..    ..++++|+.+|+++.+.  +++.+.+.||.+|..    
T Consensus       155 ~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~  230 (265)
T d1ouva_         155 GRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGV  230 (265)
T ss_dssp             TSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSS
T ss_pred             CCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCC
Confidence                4566788888888775  5578899999999987    67899999999999887  468999999999986    


Q ss_pred             hCCcccccccC
Q 024618          255 AGRYPNRGDIF  265 (265)
Q Consensus       255 ~~~~~~A~~~~  265 (265)
                      ..++++|.+.|
T Consensus       231 ~~n~~~A~~~~  241 (265)
T d1ouva_         231 TRNEKQAIENF  241 (265)
T ss_dssp             SCCSTTHHHHH
T ss_pred             ccCHHHHHHHH
Confidence            34677776643

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.7e-14  Score=86.74  Aligned_cols=82  Identities=15%  Similarity=0.071  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618          174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNY-------VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ  246 (265)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  246 (265)
                      ++.++.+|.++...|++++|+..|+++++..|.+       ..++.++|.++.+.|++++|+.+++++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4456677777777777777777777777664332       456777888888888888888888888888888887777


Q ss_pred             HHHHHHHHh
Q 024618          247 YLRISLRYA  255 (265)
Q Consensus       247 ~l~~~~~~~  255 (265)
                      +++.+...+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777665544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.51  E-value=1.8e-14  Score=96.29  Aligned_cols=97  Identities=13%  Similarity=0.118  Sum_probs=84.3

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc------
Q 024618          145 VLGVLYNLSRQYDKAIESFQTALKLKPQDY------------SLWNKLGATQANSVQSADAILAYQRALDLKPN------  206 (265)
Q Consensus       145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------  206 (265)
                      ..|..++..|+|++|+..|++++++.|+.+            .++.++|.++..+|++++|+..+++++.+.|.      
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            447888999999999999999999877643            57889999999999999999999999987543      


Q ss_pred             -----chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC
Q 024618          207 -----YVRAWANMGISYANQGMYEESVRYYVRALAMNPKA  241 (265)
Q Consensus       207 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  241 (265)
                           ...+++++|.+|..+|++++|+..|++++++.|+.
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence                 23468899999999999999999999999986654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.48  E-value=7e-14  Score=93.33  Aligned_cols=102  Identities=13%  Similarity=-0.046  Sum_probs=87.4

Q ss_pred             hhhhHHHHHcCChHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-----
Q 024618           11 LKEGQELFRKGLLSEAVLALEAEVLKNPENS------------EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT-----   73 (265)
Q Consensus        11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----   73 (265)
                      +..|..++..|+|++|+..|++++++.|+.+            .++.++|.+|..+|++++|+..+++++++.|.     
T Consensus        13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~   92 (156)
T d2hr2a1          13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   92 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence            4568899999999999999999999887643            46888999999999999999999999986442     


Q ss_pred             ------hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc
Q 024618           74 ------NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA  112 (265)
Q Consensus        74 ------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  112 (265)
                            ...+++.+|.++..+|++++|+..|++++++.|+.....
T Consensus        93 ~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~  137 (156)
T d2hr2a1          93 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET  137 (156)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchH
Confidence                  234788999999999999999999999999877655443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.9e-13  Score=82.01  Aligned_cols=82  Identities=20%  Similarity=0.144  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHH
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD-------YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA  212 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  212 (265)
                      ++-.+.+|.++.+.|++++|+..|++++++.|.+       ..++.++|.++.+.|++++|+..++++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            5567899999999999999999999999875543       578999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 024618          213 NMGISYANQ  221 (265)
Q Consensus       213 ~l~~~~~~~  221 (265)
                      +++.+...+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998766544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.44  E-value=1.5e-13  Score=99.21  Aligned_cols=132  Identities=14%  Similarity=0.047  Sum_probs=113.3

Q ss_pred             hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHH
Q 024618          115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI  194 (265)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  194 (265)
                      ..+..|++++|+..++++++.+|++...+..++.+++..|++++|+..++++++++|++...+..++.++...+..+++.
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999988777777665


Q ss_pred             HHHHHHHh-cCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618          195 LAYQRALD-LKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ  246 (265)
Q Consensus       195 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  246 (265)
                      ....+... ..|.....+...+.++...|++++|.+.++++.+..|..+..+.
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            54443322 24555667778899999999999999999999999998775543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.41  E-value=5.6e-13  Score=96.14  Aligned_cols=135  Identities=14%  Similarity=0.021  Sum_probs=109.0

Q ss_pred             hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHH
Q 024618           13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQA   92 (265)
Q Consensus        13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   92 (265)
                      +++..+..|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++++|++..++..++.++...+..+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence            46677889999999999999999999999999999999999999999999999999999999999998888877666655


Q ss_pred             HHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024618           93 AALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ  172 (265)
Q Consensus        93 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  172 (265)
                      ++........                              +...|.....+...+..+...|++++|...+.++.+..|.
T Consensus        82 ~a~~~~~~~~------------------------------~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          82 DFAQGAATAK------------------------------VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHTTSCCCEE------------------------------CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHhhhhh------------------------------cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            5432211110                              0113444566677788888999999999999999998888


Q ss_pred             CHHHH
Q 024618          173 DYSLW  177 (265)
Q Consensus       173 ~~~~~  177 (265)
                      .+..+
T Consensus       132 ~~~~~  136 (264)
T d1zbpa1         132 KGFLA  136 (264)
T ss_dssp             CCEEE
T ss_pred             CCccc
Confidence            76443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=1.6e-10  Score=78.13  Aligned_cols=94  Identities=14%  Similarity=-0.034  Sum_probs=84.6

Q ss_pred             cchhhhHHHHHcCChHHHHHHHHHHHHhCCCCh----------------------HHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618            9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENS----------------------EGWRLLGIAHAENDDDQQAIAAMMR   66 (265)
Q Consensus         9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~~~~~~~~A~~~~~~   66 (265)
                      ..+..|......|++++|+..|.+++...+...                      .++..++.++...|++++|+..+++
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~   92 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA   92 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            346789999999999999999999999876432                      3677899999999999999999999


Q ss_pred             HHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 024618           67 AHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWL  102 (265)
Q Consensus        67 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  102 (265)
                      ++..+|.+..+|..++.++...|++.+|+..|+++.
T Consensus        93 al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          93 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999999999999999999999999998774

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=1.6e-10  Score=78.12  Aligned_cols=96  Identities=11%  Similarity=0.092  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHhhcCcHHHHHHH
Q 024618          140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD----------------------YSLWNKLGATQANSVQSADAILAY  197 (265)
Q Consensus       140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------~~~~~~l~~~~~~~~~~~~A~~~~  197 (265)
                      ...+...|......|++++|+..|.+++.+.+..                      ..++..++.++...|++++|+..+
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            3456666777777777777777777777765543                      256788999999999999999999


Q ss_pred             HHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618          198 QRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL  235 (265)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  235 (265)
                      ++++..+|.+..+|..++.++...|++.+|+..|+++.
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999883

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=9.4e-09  Score=63.38  Aligned_cols=78  Identities=8%  Similarity=-0.034  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHhh---cCcHHHHHHHHHHHhcCCcch-hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHH
Q 024618          174 YSLWNKLGATQANS---VQSADAILAYQRALDLKPNYV-RAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR  249 (265)
Q Consensus       174 ~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~  249 (265)
                      +.+.+..|.++.+.   .+.++|+..++.++..+|.+. +.++.+|..|.++|+|++|..+++++++++|++..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            45556666666543   334566666666666666543 56666666666666666666666666666666666554443


Q ss_pred             HH
Q 024618          250 IS  251 (265)
Q Consensus       250 ~~  251 (265)
                      .+
T Consensus       115 ~I  116 (124)
T d2pqrb1         115 MV  116 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=5.4e-09  Score=64.45  Aligned_cols=70  Identities=11%  Similarity=0.103  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHhhc---CcHHHHHHHHHHHHhcCCCh-HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 024618           41 SEGWRLLGIAHAEN---DDDQQAIAAMMRAHEAEPTN-LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGT  110 (265)
Q Consensus        41 ~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  110 (265)
                      +...+..|.++.+.   .+.++++..++.+++.+|.+ .+.++.+|..|.+.|++++|..+++++++++|++..
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q  108 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  108 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence            44555555555433   23345555555555555543 245555555555555555555555555555555543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.78  E-value=1.6e-07  Score=59.92  Aligned_cols=111  Identities=16%  Similarity=0.114  Sum_probs=83.6

Q ss_pred             hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHHH
Q 024618          120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN----SVQSADAIL  195 (265)
Q Consensus       120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~  195 (265)
                      .++++|+.+|+++.+..  ++.+...++.  ....+.++|+..++++.+.  .++.+.+.+|.+|..    ..++++|++
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            35666777777766553  3444555553  3456788999999998764  678889999998876    467889999


Q ss_pred             HHHHHHhcCCcchhhHHHHHHHHHh----cCCcHHHHHHHHHHHhcC
Q 024618          196 AYQRALDLKPNYVRAWANMGISYAN----QGMYEESVRYYVRALAMN  238 (265)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~  238 (265)
                      +|+++.+.  .++.+.+.+|.+|..    ..+.++|+.+|+++.+..
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            99998875  457788889998887    467889999999998764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.71  E-value=4.8e-07  Score=57.65  Aligned_cols=79  Identities=19%  Similarity=0.246  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHH
Q 024618          123 ADVARLFVEAARMSPEDADVHIVLGVLYNL----SRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN----SVQSADAI  194 (265)
Q Consensus       123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~  194 (265)
                      ++|+.+++++.+.  .++.+.+.+|.+|..    ..++++|+.+|+++.+.  .++.+.+.+|.+|..    ..+.++|+
T Consensus        40 ~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~  115 (133)
T d1klxa_          40 QKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAV  115 (133)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHH
Confidence            3444444444432  456667777777664    45677777777777664  567777777777766    45677788


Q ss_pred             HHHHHHHhcCC
Q 024618          195 LAYQRALDLKP  205 (265)
Q Consensus       195 ~~~~~~~~~~~  205 (265)
                      .+|+++.+...
T Consensus       116 ~~~~~Aa~~G~  126 (133)
T d1klxa_         116 KTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHCCC
Confidence            88877776544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.70  E-value=0.00075  Score=49.41  Aligned_cols=173  Identities=13%  Similarity=0.111  Sum_probs=101.3

Q ss_pred             chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618           10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL   89 (265)
Q Consensus        10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   89 (265)
                      .-..|..+.+.|.|+.|..+|...        .-+-.+..++...++++.|...+.+.     +++.+|..+........
T Consensus        17 ~~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~   83 (336)
T d1b89a_          17 IQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK   83 (336)
T ss_dssp             ------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCc
Confidence            345688899999999999999854        11445567788999999999988776     45677777777766655


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-
Q 024618           90 EQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK-  168 (265)
Q Consensus        90 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-  168 (265)
                      +..-+.- ........|+........+...|.+++.+.+++..+...+.+...+..++.++.+.+ .++-++.++..-. 
T Consensus        84 e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~  161 (336)
T d1b89a_          84 EFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSR  161 (336)
T ss_dssp             CHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTT
T ss_pred             HHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhcccc
Confidence            5443311 111111111111112556677788899999999888888888888888888777654 4455555443211 


Q ss_pred             hCCC-------CHHHHHHHHHHHHhhcCcHHHHHHH
Q 024618          169 LKPQ-------DYSLWNKLGATQANSVQSADAILAY  197 (265)
Q Consensus       169 ~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~  197 (265)
                      .++.       ....|-.+..+|.+.|++++|+...
T Consensus       162 y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~  197 (336)
T d1b89a_         162 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  197 (336)
T ss_dssp             SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH
Confidence            1111       1122455667777888888776554

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=0.005  Score=47.10  Aligned_cols=50  Identities=6%  Similarity=-0.195  Sum_probs=23.6

Q ss_pred             hhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618          186 NSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL  235 (265)
Q Consensus       186 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  235 (265)
                      ..+++..+...+...-......+...+.+|..+...|+.++|...|..+.
T Consensus       297 ~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a  346 (450)
T d1qsaa1         297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (450)
T ss_dssp             HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence            34455555544443222111223444555555555555555555555554

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.02  Score=43.61  Aligned_cols=173  Identities=5%  Similarity=-0.144  Sum_probs=117.3

Q ss_pred             hhhhHHHHHHHHHHHHhcCCCCCCCc-------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 024618           87 NELEQAAALKYLYGWLRHHPKYGTIA-------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA  159 (265)
Q Consensus        87 ~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  159 (265)
                      ...+.+.|...+.......+......       +..+...+..+.+...+........+.......++ .....+++..+
T Consensus       226 a~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~  304 (450)
T d1qsaa1         226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGL  304 (450)
T ss_dssp             HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHH
T ss_pred             hccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHH
Confidence            34566677777776655444333222       33334456667777777776665554443333334 45667899998


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-----------------------------hhh
Q 024618          160 IESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY-----------------------------VRA  210 (265)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------------~~~  210 (265)
                      ...+..+-......+...+.+|..+...|+.++|...|..+... ++.                             ...
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~  383 (450)
T d1qsaa1         305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP  383 (450)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred             HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcCh
Confidence            88887654333344677899999999999999999999987642 110                             011


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618          211 WANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD  263 (265)
Q Consensus       211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  263 (265)
                      -...+..+...|+...|...+..++...  ++.-...++.+..+.|.++.|+.
T Consensus       384 ~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~  434 (450)
T d1qsaa1         384 EMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQ  434 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHH
Confidence            2456778889999999999998887543  45667788999999999887764

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.86  E-value=0.19  Score=36.35  Aligned_cols=229  Identities=13%  Similarity=0.024  Sum_probs=108.8

Q ss_pred             hHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHH
Q 024618           14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAA   93 (265)
Q Consensus        14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~   93 (265)
                      ..++...++++.|...+.+.     +++..|..+...+....+..-+..+ ...   ...+++-...+...|...|.+++
T Consensus        47 ~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~  117 (336)
T d1b89a_          47 ASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEE  117 (336)
T ss_dssp             HHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHH
Confidence            44555666666666665544     4567777777777766665443221 101   11233334445566667777778


Q ss_pred             HHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHh-cCCC-------CHHHHHHHHHHHHHccCHHHHHHH
Q 024618           94 ALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAAR-MSPE-------DADVHIVLGVLYNLSRQYDKAIES  162 (265)
Q Consensus        94 A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~-~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~  162 (265)
                      .+.+++.++...+.+....   +..+.+. +.++-.+.++.... .++.       ....|-.+..+|.+.|++++|+..
T Consensus       118 Li~~Le~~~~~~~~~~~~~~~L~~lyak~-~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~  196 (336)
T d1b89a_         118 LITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT  196 (336)
T ss_dssp             HHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCccchHHHHHHHHHHHHh-ChHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHH
Confidence            8877877776555443332   3333222 22333333322111 1110       011244566677777888877665


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh----------hHHHHHHHHHhcCCcHHHHHHHH
Q 024618          163 FQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR----------AWANMGISYANQGMYEESVRYYV  232 (265)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~  232 (265)
                      +-.-    |.+..-....-.++.+..+.+..-+...-.+...|....          -...+.....+.++..-...+++
T Consensus       197 ~i~~----~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le  272 (336)
T d1b89a_         197 MMNH----PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLR  272 (336)
T ss_dssp             HHHS----TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHH
T ss_pred             HHHc----chhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHH
Confidence            4321    111111122222333444444333333333333332211          01223334445555555555555


Q ss_pred             HHHhcCCCCchhHHHHHHHHHHhCCc
Q 024618          233 RALAMNPKADNAWQYLRISLRYAGRY  258 (265)
Q Consensus       233 ~a~~~~~~~~~~~~~l~~~~~~~~~~  258 (265)
                      .....  ++..+...+..+|...+++
T Consensus       273 ~v~~~--n~~~vn~al~~lyie~~d~  296 (336)
T d1b89a_         273 SVQNH--NNKSVNESLNNLFITEEDY  296 (336)
T ss_dssp             HHHTT--CCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHc--ChHHHHHHHHHHHhCcchh
Confidence            54432  2345666677777766664

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.87  E-value=0.77  Score=24.88  Aligned_cols=27  Identities=4%  Similarity=-0.282  Sum_probs=19.6

Q ss_pred             HHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 024618           76 EVLLSLGVSHTNELEQAAALKYLYGWL  102 (265)
Q Consensus        76 ~~~~~la~~~~~~~~~~~A~~~~~~~~  102 (265)
                      -.+...|.-+...|.|++|+++.+++.
T Consensus         9 H~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1           9 HQQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345566777888899999998875443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.32  E-value=0.4  Score=26.02  Aligned_cols=24  Identities=17%  Similarity=0.264  Sum_probs=18.4

Q ss_pred             hhhHHHHHcCChHHHHHHHHHHHH
Q 024618           12 KEGQELFRKGLLSEAVLALEAEVL   35 (265)
Q Consensus        12 ~~~~~~~~~~~~~~A~~~~~~~~~   35 (265)
                      .+|..+...|+|++||++.+++..
T Consensus        13 RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1          13 RRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            457778888888888888877643