Citrus Sinensis ID: 024628


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
MSMLLVLCFATHTAEARRDRDPLISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQKSF
ccHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHcccccccccEEEcccccccHHHHHccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccccccccccc
cEEEEEEEcccccccccccccccHHHcccHHHHHHHccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHccccccEccccccccccccccccccccccccccEccccEccHHHHHHHHHHHcccccccccHHHHcHHHHHHHHHHHHHccccccccHHHHHcccccccHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccc
MSMLLVLCFAThtaearrdrdplisNLVSKELFAAIFLhkddnacpakgfytydsfiqatscfprfgnvgslaTRKREIAAFLAQISHettggwatapdgpfawglcfkeevtpqsdycdssnrkwpcypgksykgrgpiqlswnynygpagkalgfdglrnpeivannSLIAFKTALWFWmteqkpkpschnvmigkyvptkadlaanrtvGFGLVTNIINgglecgipndgrvndrIGYFRRYAKLLnvdtgnnldcenqksf
MSMLLVLCFAthtaearrdrdplISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEVTpqsdycdssnrkwPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKllnvdtgnnldcenqksf
MSMLLVLCFATHTAEARRDRDPLISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQKSF
***LLVLCFATHTAEARRDRDPLISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGN**********
MSMLLVLCFA****************LVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQKS*
MSMLLVLCFATHTAEARRDRDPLISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQKSF
MSMLLVLCFATHTAEARRDRDPLISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQK**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiii
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSMLLVLCFATHTAEARRDRDPLISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQKSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query265 2.2.26 [Sep-21-2011]
Q5NB11290 Chitinase 10 OS=Oryza sat yes no 0.890 0.813 0.711 1e-104
Q9FRV1321 Basic endochitinase A OS= N/A no 0.909 0.750 0.619 4e-89
Q09023322 Endochitinase CH25 OS=Bra N/A no 0.909 0.748 0.607 5e-89
Q9FRV0266 Basic endochitinase C OS= N/A no 0.909 0.906 0.615 9e-88
P19171335 Basic endochitinase B OS= no no 0.909 0.719 0.599 3e-87
P36361327 Endochitinase CH5B OS=Pha N/A no 0.905 0.733 0.611 5e-86
Q42993323 Chitinase 1 OS=Oryza sati no no 0.909 0.746 0.598 5e-86
P06215328 Endochitinase OS=Phaseolu N/A no 0.905 0.731 0.611 6e-86
P24091324 Endochitinase B OS=Nicoti N/A no 0.909 0.743 0.595 8e-86
Q05537246 Basic endochitinase (Frag N/A no 0.909 0.979 0.590 1e-85
>sp|Q5NB11|CHI10_ORYSJ Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1 Back     alignment and function desciption
 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 168/236 (71%), Positives = 202/236 (85%)

Query: 30  KELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHE 89
           ++L+A++FLHKDD ACPA+GFYTY SF++A + FPRF   G    RKRE+AAFLAQISHE
Sbjct: 55  EQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHE 114

Query: 90  TTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLSWNYNYG 149
           TTGGWATAPDGP+AWGLC+KEE+ PQS YCD+++++WPCYPGKSY GRGPIQ+SWN+NYG
Sbjct: 115 TTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYG 174

Query: 150 PAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTKADLAAN 209
           PAG+ALGFDGLRNPEIVAN S IAF+TALWFWMT +  KPSCH VM+G+Y P  AD+AAN
Sbjct: 175 PAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAAN 234

Query: 210 RTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQKSF 265
           RT GFGLVTNI+NGGLEC    D RVN+RIG++RRY ++L VD G NLDCE+Q+ F
Sbjct: 235 RTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290





Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 4
>sp|Q9FRV1|CHIA_SECCE Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1 Back     alignment and function description
>sp|Q09023|CHI2_BRANA Endochitinase CH25 OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q9FRV0|CHIC_SECCE Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1 Back     alignment and function description
>sp|P19171|CHIB_ARATH Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3 Back     alignment and function description
>sp|P36361|CHI5_PHAVU Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1 Back     alignment and function description
>sp|Q42993|CHI1_ORYSJ Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1 Back     alignment and function description
>sp|P06215|CHIT_PHAVU Endochitinase OS=Phaseolus vulgaris PE=1 SV=1 Back     alignment and function description
>sp|P24091|CHI2_TOBAC Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1 Back     alignment and function description
>sp|Q05537|CHID_SOLLC Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
255548237275 class I chitinase, putative [Ricinus com 0.969 0.934 0.842 1e-129
295291568325 class II chitinase [Arachis hypogaea] 1.0 0.815 0.773 1e-125
1237025277 chitinase (class II) [Arachis hypogaea] 1.0 0.956 0.777 1e-124
147859764267 hypothetical protein VITISV_035324 [Viti 0.996 0.988 0.803 1e-124
388504910281 unknown [Lotus japonicus] 0.984 0.928 0.796 1e-124
224130822249 predicted protein [Populus trichocarpa] 0.939 1.0 0.844 1e-123
359479987267 PREDICTED: LOW QUALITY PROTEIN: chitinas 0.996 0.988 0.803 1e-123
343131267276 class II chitinase, partial [Elaeis guin 0.981 0.942 0.784 1e-123
5880845273 chitinase precursor [Petroselinum crispu 0.992 0.963 0.761 1e-120
356501833281 PREDICTED: chitinase 10-like [Glycine ma 0.981 0.925 0.790 1e-119
>gi|255548237|ref|XP_002515175.1| class I chitinase, putative [Ricinus communis] gi|223545655|gb|EEF47159.1| class I chitinase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 219/260 (84%), Positives = 238/260 (91%), Gaps = 3/260 (1%)

Query: 6   VLCFATHTAEARRDRDPLISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPR 65
           +L FA + AEAR+     IS+L++K+LF +IFLHKDD ACPAK FYTYDSFIQAT CFPR
Sbjct: 18  LLSFAAYKAEARKFP---ISSLITKDLFDSIFLHKDDTACPAKDFYTYDSFIQATRCFPR 74

Query: 66  FGNVGSLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRK 125
           FGN GSLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEV+PQSDYCDS+N +
Sbjct: 75  FGNTGSLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEVSPQSDYCDSTNTQ 134

Query: 126 WPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQ 185
           WPC+PGKSYKGRGPIQLSWN+NYGPAGKALGFDGL+NPEIV+NNSLIAFKT LWFWMTEQ
Sbjct: 135 WPCFPGKSYKGRGPIQLSWNFNYGPAGKALGFDGLKNPEIVSNNSLIAFKTGLWFWMTEQ 194

Query: 186 KPKPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRY 245
           KPKPSCH VM+GKYVPTKADLAANRT G+GLVTNIINGGLECGIPND RVNDRIGYF+RY
Sbjct: 195 KPKPSCHRVMVGKYVPTKADLAANRTAGYGLVTNIINGGLECGIPNDSRVNDRIGYFQRY 254

Query: 246 AKLLNVDTGNNLDCENQKSF 265
           AKL NV TG NLDC+NQK F
Sbjct: 255 AKLFNVGTGPNLDCQNQKPF 274




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295291568|gb|ADF87393.1| class II chitinase [Arachis hypogaea] Back     alignment and taxonomy information
>gi|1237025|emb|CAA57773.1| chitinase (class II) [Arachis hypogaea] Back     alignment and taxonomy information
>gi|147859764|emb|CAN83140.1| hypothetical protein VITISV_035324 [Vitis vinifera] Back     alignment and taxonomy information
>gi|388504910|gb|AFK40521.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224130822|ref|XP_002320933.1| predicted protein [Populus trichocarpa] gi|222861706|gb|EEE99248.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359479987|ref|XP_003632384.1| PREDICTED: LOW QUALITY PROTEIN: chitinase 10-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|343131267|gb|AEL89178.1| class II chitinase, partial [Elaeis guineensis] Back     alignment and taxonomy information
>gi|5880845|gb|AAD54935.1|AF141373_1 chitinase precursor [Petroselinum crispum] Back     alignment and taxonomy information
>gi|356501833|ref|XP_003519728.1| PREDICTED: chitinase 10-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
TAIR|locus:2133412280 AT4G01700 [Arabidopsis thalian 0.958 0.907 0.743 7.8e-110
TAIR|locus:2204918272 AT1G02360 [Arabidopsis thalian 0.984 0.959 0.715 1.7e-107
UNIPROTKB|Q9FRV1321 rsca "Basic endochitinase A" [ 0.909 0.750 0.619 1.3e-84
UNIPROTKB|Q9FRV0266 rscc "Basic endochitinase C" [ 0.992 0.988 0.579 2.4e-83
UNIPROTKB|Q7DNA1340 Cht2 "Chitinase 2" [Oryza sati 0.909 0.708 0.578 1e-82
UNIPROTKB|Q42993323 Cht1 "Chitinase 1" [Oryza sati 0.909 0.746 0.598 2.2e-82
UNIPROTKB|P24626320 Cht3 "Chitinase 3" [Oryza sati 0.909 0.753 0.551 1.6e-77
UNIPROTKB|P25765326 Cht12 "Chitinase 12" [Oryza sa 0.909 0.739 0.575 1.6e-77
UNIPROTKB|A7XQ02415 A7XQ02 "Mulatexin" [Morus alba 0.818 0.522 0.456 5.2e-49
UNIPROTKB|O04138285 Cht4 "Chitinase 4" [Oryza sati 0.547 0.508 0.468 1.2e-45
TAIR|locus:2133412 AT4G01700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
 Identities = 191/257 (74%), Positives = 223/257 (86%)

Query:    12 HTAEARRDRD--PL-ISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGN 68
             H  EAR+     P  I +LV + L+  IF+HKD+NACPAKGFY Y++F++AT  FP+FG+
Sbjct:    23 HETEARKHNKYKPAPIMSLVPRTLYDQIFIHKDNNACPAKGFYPYEAFVEATRSFPKFGS 82

Query:    69 VGSLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPC 128
             VG+  TR+RE+AAFLAQISHETTGGWATAPDGP+AWGLCFKEEV+PQS+YCD+SN+ WPC
Sbjct:    83 VGNFWTRRREVAAFLAQISHETTGGWATAPDGPYAWGLCFKEEVSPQSNYCDASNKDWPC 142

Query:   129 YPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPK 188
               GKSYKGRGPIQLSWNYNYG AG+ALGFDGL+NPE+VANNS++AFKTALWFWMTEQ PK
Sbjct:   143 VSGKSYKGRGPIQLSWNYNYGQAGRALGFDGLQNPELVANNSVLAFKTALWFWMTEQTPK 202

Query:   189 PSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKL 248
             PSCHNVM+ +Y PTKAD AANRTVG+GLVTNIINGGLECGIP DGRV DR+GYF+RYA+L
Sbjct:   203 PSCHNVMVNRYRPTKADRAANRTVGYGLVTNIINGGLECGIPGDGRVTDRVGYFQRYAQL 262

Query:   249 LNVDTGNNLDCENQKSF 265
               V TG NLDCENQ+ F
Sbjct:   263 FKVTTGPNLDCENQRPF 279




GO:0004568 "chitinase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0050832 "defense response to fungus" evidence=IEP
GO:0006865 "amino acid transport" evidence=RCA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2204918 AT1G02360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FRV1 rsca "Basic endochitinase A" [Secale cereale (taxid:4550)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FRV0 rscc "Basic endochitinase C" [Secale cereale (taxid:4550)] Back     alignment and assigned GO terms
UNIPROTKB|Q7DNA1 Cht2 "Chitinase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q42993 Cht1 "Chitinase 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P24626 Cht3 "Chitinase 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P25765 Cht12 "Chitinase 12" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A7XQ02 A7XQ02 "Mulatexin" [Morus alba (taxid:3498)] Back     alignment and assigned GO terms
UNIPROTKB|O04138 Cht4 "Chitinase 4" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q05537CHID_SOLLC3, ., 2, ., 1, ., 1, 40.59090.90940.9796N/Ano
P23951CHI2_HORVU3, ., 2, ., 1, ., 1, 40.60740.90940.9060N/Ano
Q9FRV0CHIC_SECCE3, ., 2, ., 1, ., 1, 40.61570.90940.9060N/Ano
P85084CHIT_CARPA3, ., 2, ., 1, ., 1, 40.59090.90940.9917N/Ano
Q5NB11CHI10_ORYSJ3, ., 2, ., 1, ., 1, 40.71180.89050.8137yesno
Q40114CHIA_SOLCI3, ., 2, ., 1, ., 1, 40.50410.83010.8695N/Ano

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.140.991
3rd Layer3.2.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
gw1.XIV.2074.1
hypothetical protein (249 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
cd00325230 cd00325, chitinase_glyco_hydro_19, Glycoside hydro 1e-136
pfam00182232 pfam00182, Glyco_hydro_19, Chitinase class I 1e-134
cd00442105 cd00442, lysozyme_like, lysozyme_like domain 7e-14
COG3179206 COG3179, COG3179, Predicted chitinase [General fun 1e-05
>gnl|CDD|238199 cd00325, chitinase_glyco_hydro_19, Glycoside hydrolase family 19 chitinase domain Back     alignment and domain information
 Score =  382 bits (982), Expect = e-136
 Identities = 145/232 (62%), Positives = 171/232 (73%), Gaps = 2/232 (0%)

Query: 28  VSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQIS 87
           V++ LF  IF H++D+ CPAKGFYTYD+FI A + FP FG  G   TRKREIAAF A  S
Sbjct: 1   VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTS 60

Query: 88  HETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLSWNYN 147
           HET GG   APDGP+AWG C K E  P S YCD    +WPC PGK Y GRGPIQLSWNYN
Sbjct: 61  HETGGGCYIAPDGPYAWGYCDKSETGPPSSYCDP--AQWPCAPGKKYYGRGPIQLSWNYN 118

Query: 148 YGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTKADLA 207
           YGPAGKALGFD L NP++VA + +++FKTA+WFWMT Q PKPSCH+V+ G + P+ AD A
Sbjct: 119 YGPAGKALGFDLLNNPDLVATDPVVSFKTAIWFWMTPQGPKPSCHDVITGTWTPSAADTA 178

Query: 208 ANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDC 259
           A R  GFG  TNIINGGLECG  N  +V +RIGY++RY  +L V  G+NLDC
Sbjct: 179 AGRGPGFGATTNIINGGLECGGGNPDQVQNRIGYYKRYCDMLGVSPGDNLDC 230


Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. Length = 230

>gnl|CDD|201064 pfam00182, Glyco_hydro_19, Chitinase class I Back     alignment and domain information
>gnl|CDD|238249 cd00442, lysozyme_like, lysozyme_like domain Back     alignment and domain information
>gnl|CDD|225720 COG3179, COG3179, Predicted chitinase [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 265
cd00325230 chitinase_glyco_hydro_19 Glycoside hydrolase famil 100.0
PF00182232 Glyco_hydro_19: Chitinase class I; InterPro: IPR00 100.0
KOG4742286 consensus Predicted chitinase [General function pr 100.0
COG3179206 Predicted chitinase [General function prediction o 100.0
cd00442105 lysozyme_like lysozyme_like domain. This contains 99.51
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain Back     alignment and domain information
Probab=100.00  E-value=2.5e-77  Score=532.63  Aligned_cols=230  Identities=63%  Similarity=1.216  Sum_probs=220.9

Q ss_pred             cCHHHHHHHhccCCCCCCCCCCccCHHHHHHHHhcCcccccCCCchhhhHHHHHHhhhcccccCCCccCCCCCCCccCcc
Q 024628           28 VSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLC  107 (265)
Q Consensus        28 it~~~f~~ifp~r~~~~~~~~~~yty~~fi~A~~~~~~f~~~g~~~~~~re~A~FLAq~~hET~~g~~~~~~~~~~w~~~  107 (265)
                      ||+++|++|||+|++..||+++||||++||+|+++||+|+++|+.+++|||+||||||++|||++++...+.+++.|++|
T Consensus         1 ~t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~~~~~g~c   80 (230)
T cd00325           1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDGPYAWGYC   80 (230)
T ss_pred             CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhccccccCCCchhhHHHHHHHHhhhcccCCCCccccccccccCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999986665566788999999


Q ss_pred             eecccCCCCCCCCCCCCCCCCCCCCCcccCCCccccchhhHHHHHHHhCCCCCCChhHhhcChHHHHHHHHHHHHhcCCC
Q 024628          108 FKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKP  187 (265)
Q Consensus       108 ~~~E~~~~~~yc~~~n~~~~~~dG~~Y~GRG~iQLT~~~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~~~~~~  187 (265)
                      +.+|..+...||..  .+|||+||++|||||+||||||+||++++++++.|||+|||+|++||.+|+++|+||||+++.+
T Consensus        81 ~~~e~~~~~~~~~~--~~~pc~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~~Pdlva~dp~~a~~sA~WfW~t~~~~  158 (230)
T cd00325          81 DKSETGPPSSYCDP--AQWPCAPGKKYYGRGPIQLSWNYNYGPAGKALGFDLLNNPDLVATDPVVSFKTAIWFWMTPQGP  158 (230)
T ss_pred             ccccCCCccccccc--CCCCCCcccccccCCceeeeehhhHHHHHHHhCCccccCHHHHhcCchhhhhhhhhheeeCCCC
Confidence            99999887788876  6799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccccccCChhhhhhccCCCccchhhhhcCCccCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCC
Q 024628          188 KPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDC  259 (265)
Q Consensus       188 ~ps~h~~~~g~w~p~~~D~~~~~~~~f~~~t~iINGg~ec~~~~~~~~~~R~~~y~~~~~~Lgv~~g~~l~c  259 (265)
                      ||+||+||+|+|+|+.+|.++.+.++|+.||+|||||+||++++.+++.+|+++|+++|++|||+||+||+|
T Consensus       159 k~s~h~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~EC~~~~~~~~~~Ri~~Y~~~~~~lgv~~g~nL~C  230 (230)
T cd00325         159 KPSCHDVITGTWTPSAADTAAGRGPGFGATTNIINGGLECGGGNPDQVQNRIGYYKRYCDMLGVSPGDNLDC  230 (230)
T ss_pred             CCCcceeeccCcCCchhhhhccccCChhhhheeecCCcccCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999



Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en

>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG4742 consensus Predicted chitinase [General function prediction only] Back     alignment and domain information
>COG3179 Predicted chitinase [General function prediction only] Back     alignment and domain information
>cd00442 lysozyme_like lysozyme_like domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
4dwx_A244 Crystal Structure Of A Family Gh-19 Chitinase From 9e-89
3cql_A243 Crystal Structure Of Gh Family 19 Chitinase From Ca 4e-88
2baa_A243 The Refined Crystal Structure Of An Endochitinase F 1e-84
1cns_A243 Crystal Structure Of Chitinase At 1.91a Resolution 1e-84
2z37_A244 Crystal Structure Of Brassica Juncea Chitinase Cata 3e-82
2z38_A247 Crystal Structure Of Chloride Bound Brassica Juncea 3e-82
2z39_A246 Crystal Structure Of Brassica Juncea Chitinase Cata 1e-81
2dkv_A309 Crystal Structure Of Class I Chitinase From Oryza S 2e-81
3w3e_A242 Structure Of Vigna Unguiculata Chitinase With Regul 3e-75
1dxj_A242 Structure Of The Chitinase From Jack Bean Length = 4e-74
3hbd_A204 Class Iv Chitinase Structure From Picea Abies At 1. 2e-46
2cjl_A204 Crystal Structure And Enzymatic Properties Of A Bac 8e-36
1wvu_A265 Crystal Structure Of Chitinase C From Streptomyces 1e-33
1wvv_A265 Crystal Structure Of Chitinase C Mutant E147q Lengt 3e-33
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds Length = 244 Back     alignment and structure

Iteration: 1

Score = 322 bits (826), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 149/242 (61%), Positives = 182/242 (75%), Gaps = 1/242 (0%) Query: 24 ISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFL 83 +S+++S F + LH++D AC AKGFYTYD+F+ A + FP FG GS RKR++AAFL Sbjct: 3 VSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFL 62 Query: 84 AQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLS 143 AQ SHETTGGWATAPDG FAWG CFK+E +DYC S +WPC PGK Y GRGPIQLS Sbjct: 63 AQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSA-QWPCAPGKRYYGRGPIQLS 121 Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTK 203 NYNYGPAG+A+G D LRNP++VA + ++FKTALWFWMT Q PKPS H V+ GK+ P+ Sbjct: 122 HNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSG 181 Query: 204 ADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQK 263 AD AA R GFG++TNIINGGLECG D RV DRIG+++RY +L V G+NLDC NQ+ Sbjct: 182 ADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQR 241 Query: 264 SF 265 F Sbjct: 242 PF 243
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya Length = 243 Back     alignment and structure
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution Length = 243 Back     alignment and structure
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution Length = 243 Back     alignment and structure
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) Length = 244 Back     alignment and structure
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea Chitinase Catalytic Module (Bjchi3) Length = 247 Back     alignment and structure
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module Glu234ala Mutant (bjchi3-e234a) Length = 246 Back     alignment and structure
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa L. Japonica Length = 309 Back     alignment and structure
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation Activity Of The Plant Cell Wall Length = 242 Back     alignment and structure
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean Length = 242 Back     alignment and structure
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a Length = 204 Back     alignment and structure
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial Family 19 Chitinase Reveal Differences With Plant Enzymes Length = 204 Back     alignment and structure
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus Hut6037 Length = 265 Back     alignment and structure
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q Length = 265 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
2z37_A244 Chitinase; family 19, conformational changes, hydr 1e-100
3cql_A243 Endochitinase; glycosyl hydrolase, N-acetyl-D-gluc 1e-93
1dxj_A242 Class II chitinase; hydrolase, family 19 glycosida 4e-92
2dkv_A309 Chitinase; whole structure, oryza sativa L. japoni 2e-79
2cjl_A204 Chitinase G, secreted chitinase; hydrolase, plant 2e-67
3hbe_X204 Class IV chitinase CHIA4-PA2; endochitinase, famil 1e-62
1wvv_A265 Chitinase C; family 19 chitinase, whole structure, 3e-62
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A Length = 244 Back     alignment and structure
 Score =  292 bits (747), Expect = e-100
 Identities = 131/242 (54%), Positives = 177/242 (73%)

Query: 24  ISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFL 83
           +S ++S++ F  +  H +DN C A GF+TYD+FI A   FP FGN G LA RK+EIAAF 
Sbjct: 2   LSGIISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFF 61

Query: 84  AQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLS 143
            Q SHETTGGW+ APDG   WG C+KEE+     +CDS+N +WPC PGK Y GRGP+ LS
Sbjct: 62  GQTSHETTGGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLS 121

Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTK 203
           WNYNYGP G+ LG + L+NP++ +++ +IAFKTA+WFWMT Q PKPSCH+V+  ++ P+ 
Sbjct: 122 WNYNYGPCGRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSA 181

Query: 204 ADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQK 263
           AD++A R  G+G++TNIINGGLEC   +  +V DRI ++ RY  +  VD G+N+DC+NQ+
Sbjct: 182 ADISAGRLPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDCDNQR 241

Query: 264 SF 265
            F
Sbjct: 242 PF 243


>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A Length = 243 Back     alignment and structure
>1dxj_A Class II chitinase; hydrolase, family 19 glycosidase, alpha helical protein; 1.8A {Canavalia ensiformis} SCOP: d.2.1.1 Length = 242 Back     alignment and structure
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A* Length = 309 Back     alignment and structure
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor} Length = 204 Back     alignment and structure
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} PDB: 3hbd_A 3hbh_A Length = 204 Back     alignment and structure
>1wvv_A Chitinase C; family 19 chitinase, whole structure, hydrolase; 2.00A {Streptomyces griseus} PDB: 1wvu_A 2dbt_A* 2d49_A Length = 265 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
3w3e_A242 Cotyledoneous yieldin-like protein; alpha helical 100.0
3cql_A243 Endochitinase; glycosyl hydrolase, N-acetyl-D-gluc 100.0
2z37_A244 Chitinase; family 19, conformational changes, hydr 100.0
1dxj_A242 Class II chitinase; hydrolase, family 19 glycosida 100.0
2dkv_A309 Chitinase; whole structure, oryza sativa L. japoni 100.0
3hbe_X204 Class IV chitinase CHIA4-PA2; endochitinase, famil 100.0
2cjl_A204 Chitinase G, secreted chitinase; hydrolase, plant 100.0
1wvv_A265 Chitinase C; family 19 chitinase, whole structure, 100.0
>3w3e_A Cotyledoneous yieldin-like protein; alpha helical protein, hydrolase, family 19 glycosidase, REG protein of the cell WALL yield threshold; 1.50A {Vigna unguiculata} PDB: 1dxj_A Back     alignment and structure
Probab=100.00  E-value=9.3e-90  Score=612.69  Aligned_cols=240  Identities=54%  Similarity=1.043  Sum_probs=235.5

Q ss_pred             ccccccCHHHHHHHhccCCCCCCCCCCccCHHHHHHHHhcCcccccCCCchhhhHHHHHHhhhcccccCCCccCCCCCCC
Q 024628           23 LISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHETTGGWATAPDGPF  102 (265)
Q Consensus        23 ~v~~~it~~~f~~ifp~r~~~~~~~~~~yty~~fi~A~~~~~~f~~~g~~~~~~re~A~FLAq~~hET~~g~~~~~~~~~  102 (265)
                      +|++|||+++|++|||||+++.||+++||||++||+|+++||+|+++|+.+++||||||||||++|||+|||.++++++|
T Consensus         2 ~v~~ivt~~~f~~~~~~rn~~~c~~~~fYty~~fi~Aa~~fp~F~~tg~~~~~krElAaFlA~~~hET~gg~~~a~~g~~   81 (242)
T 3w3e_A            2 EVGSVIGASLFDQLLKHRNDQACEGKGFYSYNAFITAARSFAAFGTTGDSNTRKREVAAFLAQTSHETTGGAATSPDGPY   81 (242)
T ss_dssp             CGGGTSCHHHHHHHTTTTTSTTSSCTTCSCHHHHHHHHHTSTTTTCSSSHHHHHHHHHHHHHHHHHHTCCCCTTSTTCGG
T ss_pred             chHhhCCHHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhhhhhcCCCCchhhHHHHHHHHhhcccccCCCcccCCCCcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             ccCcceecccCCCCCCCCCCCCCCCCCCCCCcccCCCccccchhhHHHHHHHhCCCCCCChhHhhcChHHHHHHHHHHHH
Q 024628          103 AWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWM  182 (265)
Q Consensus       103 ~w~~~~~~E~~~~~~yc~~~n~~~~~~dG~~Y~GRG~iQLT~~~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~  182 (265)
                      +|+|||+||+++...||+   .+|||+||++|||||+||||||+||++++++++.|||+|||+|++||.+|+++|+||||
T Consensus        82 ~wg~~~~~E~~~~~~YC~---~~~Pc~dG~~Y~GRG~IQLTg~~NY~~~g~~lg~Dll~nPdlva~dp~~a~~sA~wfW~  158 (242)
T 3w3e_A           82 AWGYCFVTERDKSNRYCD---GSGPCSAGKSYYGRGPIQLTHNYNYNAAGRALGVDLINNPDLVARDAVVSFKTALWFWM  158 (242)
T ss_dssp             GCTTCCSBCSCCSCCCCC---SSSCCCTTCCCCCBTTTTBCSHHHHHHHHHHHTSCTTTCTTHHHHCHHHHHHHHHHHHH
T ss_pred             ceEEEEeecccCcccccc---cCCCCCCCCceecCCcccCCcHHHHHHHHHHhCCccccCHHHHhhCHHHHHHHHHhhhe
Confidence            999999999998889998   68999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCccccccccccCChhhhhhccCCCccchhhhhcCCccCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q 024628          183 TEQKPKPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQ  262 (265)
Q Consensus       183 ~~~~~~ps~h~~~~g~w~p~~~D~~~~~~~~f~~~t~iINGg~ec~~~~~~~~~~R~~~y~~~~~~Lgv~~g~~l~c~~~  262 (265)
                      +++.+|||||+||+|+|+|+.+|.++++.++|+.||+|||||+||++++.+++++|+++|+++|++|||+||+||+|.+|
T Consensus       159 t~~~~kps~h~vi~g~w~p~~aD~~agr~~gfg~tt~iINGGlECg~~~~~~~~dRi~~Y~r~~~~Lgv~~G~nl~C~~q  238 (242)
T 3w3e_A          159 TPQGNKPSCHDVITNRWTPSAADKAANRVPGFGVITNIINGGLECGKGPTPASGDRIGFYKRYCDVFGVSYGPNLNCRDQ  238 (242)
T ss_dssp             CCBTTBCCHHHHHTTCCCCCHHHHHTTCCSSHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHHHHHTCCCCSCCCCTTC
T ss_pred             eCCCCCCchhhhhhccCCCccchhhhcccCChhhheeeecCccccCCCCchHHHHHHHHHHHHHHHhCCCCCCCcCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 024628          263 KSF  265 (265)
Q Consensus       263 ~~f  265 (265)
                      |||
T Consensus       239 ~~f  241 (242)
T 3w3e_A          239 RPF  241 (242)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            998



>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A Back     alignment and structure
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A Back     alignment and structure
>1dxj_A Class II chitinase; hydrolase, family 19 glycosidase, alpha helical protein; 1.8A {Canavalia ensiformis} SCOP: d.2.1.1 Back     alignment and structure
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A* Back     alignment and structure
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} SCOP: d.2.1.0 PDB: 3hbd_A 3hbh_A Back     alignment and structure
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor} Back     alignment and structure
>1wvv_A Chitinase C; family 19 chitinase, whole structure, hydrolase; 2.00A {Streptomyces griseus} PDB: 1wvu_A 2dbt_A* 2d49_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 265
d1dxja_242 d.2.1.1 (A:) Plant class II chitinase {Jack bean ( 1e-114
d2baaa_243 d.2.1.1 (A:) Plant class II chitinase {Barley (Hor 1e-112
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 242 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Jack bean (Canavalia ensiformis) [TaxId: 3823]
 Score =  325 bits (833), Expect = e-114
 Identities = 127/242 (52%), Positives = 170/242 (70%), Gaps = 3/242 (1%)

Query: 24  ISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFL 83
           + +++   LF  +  H++D AC  KGFY+Y++F+ A   F  FG  G   TRKRE+AAFL
Sbjct: 2   VGSVIDASLFDQLLKHRNDPACEGKGFYSYNAFVTAARSFGGFGTTGDTNTRKREVAAFL 61

Query: 84  AQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLS 143
           AQ SHETTGG A +PDGP+AWG CF  E    + YCD      PC  GKSY GRGPIQL+
Sbjct: 62  AQTSHETTGGAAGSPDGPYAWGYCFVTERDKSNKYCDPG---TPCPAGKSYYGRGPIQLT 118

Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTK 203
            NYNY  AG+ALG D + NP++VA +++I+FKTA+WFWMT Q  KPSCH+V+  ++ P+ 
Sbjct: 119 HNYNYAQAGRALGVDLINNPDLVARDAVISFKTAIWFWMTPQGNKPSCHDVITNRWTPSA 178

Query: 204 ADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQK 263
           AD+AANRT GFG++TNIINGG+ECG        DRIG+++RY  +L++  G NL+C +Q+
Sbjct: 179 ADVAANRTPGFGVITNIINGGIECGRGPSPASGDRIGFYKRYCDVLHLSYGPNLNCRDQR 238

Query: 264 SF 265
            F
Sbjct: 239 PF 240


>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 243 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
d2baaa_243 Plant class II chitinase {Barley (Hordeum vulgare) 100.0
d1dxja_242 Plant class II chitinase {Jack bean (Canavalia ens 100.0
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Barley (Hordeum vulgare) [TaxId: 4513]
Probab=100.00  E-value=7.6e-84  Score=575.78  Aligned_cols=242  Identities=60%  Similarity=1.160  Sum_probs=235.8

Q ss_pred             ccccccCHHHHHHHhccCCCCCCCCCCccCHHHHHHHHhcCcccccCCCchhhhHHHHHHhhhcccccCCCccCCCCCCC
Q 024628           23 LISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHETTGGWATAPDGPF  102 (265)
Q Consensus        23 ~v~~~it~~~f~~ifp~r~~~~~~~~~~yty~~fi~A~~~~~~f~~~g~~~~~~re~A~FLAq~~hET~~g~~~~~~~~~  102 (265)
                      +|++|||+++|++|||||+++.||+++||||++||+|+++||+|+++|+.+++|||+||||||++|||++++...+.++|
T Consensus         1 ~v~~iit~~~F~~~fp~r~~~~c~~~~fYty~~fi~Aa~~fp~F~~tg~~~~~krElAaFlAq~~hET~g~~~~~e~~~~   80 (243)
T d2baaa_           1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAF   80 (243)
T ss_dssp             CGGGTSCHHHHHHHTTTTTSTTSTTTTTCCHHHHHHHHTTSTTTTCSSCHHHHHHHHHHHHHHHHHHTCCCCTTCTTCGG
T ss_pred             CHHHhcCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhchhhcCCCchhhhHHHHHHhhcCcccccCCCcccCCCCch
Confidence            47899999999999999999999999999999999999999999999999999999999999999999988888888999


Q ss_pred             ccCcceecccCCCCCCCCCCCCCCCCCCCCCcccCCCccccchhhHHHHHHHhCCCCCCChhHhhcChHHHHHHHHHHHH
Q 024628          103 AWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWM  182 (265)
Q Consensus       103 ~w~~~~~~E~~~~~~yc~~~n~~~~~~dG~~Y~GRG~iQLT~~~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~  182 (265)
                      .|++|+.+|.+....||+. +.+|||+||++|||||+||||||+||++++++++.||++|||+|++||.+||++|+||||
T Consensus        81 ~~g~~~~~e~~~~~~yc~~-~~~~pc~~G~~Y~GRG~iQLT~~~NY~~~g~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~  159 (243)
T d2baaa_          81 AWGYCFKQERGASSDYCTP-SAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWM  159 (243)
T ss_dssp             GCTTCCSBCCSCCCCCCCC-CSSSCCCTTCCCCCBTTTTBCSHHHHHHHHHHHTSCTTTCTTHHHHCHHHHHHHHHHHHH
T ss_pred             hhcccchhccCCccccccC-CCCCCCCCCCcccCCCcccccchhhHHHHHHHhCCCccccccceeeccHHHHHHHHHHHh
Confidence            9999999999988999975 478999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCccccccccccCChhhhhhccCCCccchhhhhcCCccCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q 024628          183 TEQKPKPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQ  262 (265)
Q Consensus       183 ~~~~~~ps~h~~~~g~w~p~~~D~~~~~~~~f~~~t~iINGg~ec~~~~~~~~~~R~~~y~~~~~~Lgv~~g~~l~c~~~  262 (265)
                      +++.++|+||++|+|+|+|+.+|.+.++.++|+.||+|||||+||++++++++++|+++|+++|++|||+||+||+|.+|
T Consensus       160 t~~~~~~s~~~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~ec~~~~~~~~~dRi~~Y~~~~~~lgv~~g~nl~C~~q  239 (243)
T d2baaa_         160 TAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQ  239 (243)
T ss_dssp             CCCTTSCCHHHHHTTCCCCCHHHHHTTCCSSHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHHHHHTCCCCSCCCCTTS
T ss_pred             cCCCCCccHHHHHhccCCcccchhhhccCCCcceEEEEEECcccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 024628          263 KSF  265 (265)
Q Consensus       263 ~~f  265 (265)
                      |||
T Consensus       240 ~~f  242 (243)
T d2baaa_         240 RPF  242 (243)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            998



>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure