Citrus Sinensis ID: 024641

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLGSWAGGRIGLMIYDVVNGVHFLLQFVQSEESEAHDAPVEEKFQDYEDSYANEAPSFWNSEASEDSKASDSSLYENSESETYENSEL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccEEEEccccccccEEEEEcccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccHHHHHHHHHccccccEEEEcccccccccccccccccccccccEEcccccccccccEEEEEEEEHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccEEEEEcccccccHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccHcEEcccccHHHHHHcccccHHHcccEEEEEcccccccHccHHEHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MDFGKKRVQFLLFVIGIIALSLTAEKCRQLvgedassqsgkftilncfdmgsgtvacgvKEGVKLYFYNIRAAHVERARNVAIEKAVVDALsqglssndAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFFEAIyyggtitegfirgtgtlfgayaggflgeerlgRFGYLvgshlgswaggrIGLMIYDVVNGVHFLLQFVQseeseahdapveekFQDYEDsyaneapsfwnseasedskasdsslyensesetyensel
Flexible Loop (DISEMBL)
mdfgkkrvQFLLFVIGIIALSLTAEKCRQLVGedassqsgkfTILNCFDMGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLGSWAGGRIGLMIYDVVNGVHFLLQFVQSEESEAHDAPVEEKFQDYEDSYANEAPSfwnseasedskasdsslyensesetyensel
Low Complexity Region (SEG)
MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDaakqaqkegakaaklakrqakrIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLGSWAGGRIGLMIYDVVNGVHFLLQFVQSEESEAHDAPVEEKFQDYEDSYANEAPSFWNseasedskasdsslyensesetyensel
Disordered region (IsUnstruct)
******RVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDAL***************************AKRIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLGSWAGGRIGLMIYDVVNGVHFLLQFV************************************************************
Disordered Region (DISOPRED)
****KKRVQFLLFVIGIIALSLTAEK***************FTILNCFDMGSGTVACGVKEGVKLYFYNIRAAHVERAR**AI**AVVD*L*************************RQAKRIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLGSWAGGRIGLMIYDVVNGVHFLLQF*************************************************************
Disordered Region (DISEMBL)
MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQG***********************QAKRIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLGSWAGGRIGLMIYDVVNGVHFLLQFVQS*********VEEKFQDYEDSYANEAPSFWN****************************
Disordered Region (DISPRO)
MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLGSWAGGRIGLMIYDVVNGVHFLLQFVQSE*********************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLGSWAGGRIGLMIYDVVNGVHFLLQFVQSEESEAHDAPVEEKFQDYEDSYANEAPSFWNSEASEDSKASDSSLYENSESETYENSEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
296089775	471	unnamed protein product [Vitis vinifera]	0.909	0.511	0.735	1e-104
224123740	259	predicted protein [Populus trichocarpa]	0.909	0.930	0.719	1e-103
356575349	266	PREDICTED: uncharacterized protein LOC10	0.981	0.977	0.690	1e-102
255542892	264	conserved hypothetical protein [Ricinus	0.984	0.988	0.735	1e-102
388496142	282	unknown [Lotus japonicus]	0.996	0.936	0.692	1e-102
225450593	242	PREDICTED: uncharacterized protein LOC10	0.901	0.987	0.741	1e-102
224125018	230	predicted protein [Populus trichocarpa]	0.856	0.986	0.762	1e-102
255646276	266	unknown [Glycine max]	0.981	0.977	0.686	1e-101
358248534	267	uncharacterized protein LOC100786994 pre	0.984	0.977	0.682	1e-100
449454014	271	PREDICTED: uncharacterized protein LOC10	0.992	0.970	0.682	1e-100

>gi|296089775|emb|CBI39594.3| unnamed protein product [Vitis vinifera]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/246 (73%), Positives = 212/246 (86%), Gaps = 5/246 (2%)

Query: 1   MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVK 60
           M+  +KRVQ L+FV+GI+ALS+TAEKCRQL+GED SSQSGKFT+LNCFDM SGT+AC VK
Sbjct: 1   MNLPRKRVQLLIFVVGIVALSITAEKCRQLLGEDGSSQSGKFTLLNCFDMSSGTLACTVK 60

Query: 61  EGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAK 120
           EGVKLYFYNIRA HVE+AR+ AIE A+ DAL+QGL++ DAAK AQKEGAKAAKLA RQAK
Sbjct: 61  EGVKLYFYNIRAVHVEKARHHAIEGALSDALTQGLNAKDAAKHAQKEGAKAAKLATRQAK 120

Query: 121 RIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLG 180
           RIIGPII++GWDFFEAIYYGGT+TEGF+RGTGTLFGAY GGFLGE+RLGRFGYLVGSHLG
Sbjct: 121 RIIGPIISSGWDFFEAIYYGGTLTEGFLRGTGTLFGAYTGGFLGEQRLGRFGYLVGSHLG 180

Query: 181 SWAGGRIGLMIYDVVNGVHFLLQFVQSEESEAHDAPVEEKFQDYEDSYANEAPSFWNSEA 240
           SW GGRIGLMIYDV NGV FLLQ VQ EE+     P++   +  ED  + E+P++ +SEA
Sbjct: 181 SWVGGRIGLMIYDVANGVQFLLQSVQPEET-----PMDMSSEVPEDPGSYESPAYESSEA 235

Query: 241 SEDSKA 246
            EDS++
Sbjct: 236 QEDSES 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123740|ref|XP_002330196.1| predicted protein [Populus trichocarpa] gi|222871652|gb|EEF08783.1| predicted protein [Populus trichocarpa]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/246 (71%), Positives = 209/246 (84%), Gaps = 5/246 (2%)

Query: 1   MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVK 60
           MDF K+RV FL+F++G IALS+TAEKCRQLVG+D SSQSGKFTI NCFDMGSGT+AC VK
Sbjct: 1   MDFQKRRVLFLVFIVGTIALSITAEKCRQLVGDDYSSQSGKFTIFNCFDMGSGTLACAVK 60

Query: 61  EGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAK 120
           EGVKLYFYNIR++HVERARN+AIE++++D + QG+ + D AK AQKEGAKAAKLAKRQ K
Sbjct: 61  EGVKLYFYNIRSSHVERARNLAIERSLLDTIGQGMPAQDVAKTAQKEGAKAAKLAKRQTK 120

Query: 121 RIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLG 180
           RIIGP+I++GWDFFEA+YYGGT+TEGF+RG+GTL GAYAGGF GEERLGR GYLVGSHLG
Sbjct: 121 RIIGPVISSGWDFFEALYYGGTVTEGFLRGSGTLAGAYAGGFFGEERLGRVGYLVGSHLG 180

Query: 181 SWAGGRIGLMIYDVVNGVHFLLQFVQSEESEAHDAPVEEKFQDYEDSYANEAPSFWNSEA 240
           SW GGRIGLM+YDVVNGVH+LLQFVQ E+ E H+ P  E F+  EDS       + + EA
Sbjct: 181 SWVGGRIGLMVYDVVNGVHYLLQFVQGEDGEVHETPTYENFEVSEDS-----QGYTSYEA 235

Query: 241 SEDSKA 246
           S+DS  
Sbjct: 236 SKDSNV 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575349|ref|XP_003555804.1| PREDICTED: uncharacterized protein LOC100810395 [Glycine max]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/271 (69%), Positives = 218/271 (80%), Gaps = 11/271 (4%)

Query: 1   MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVK 60
           MDF  +R+  L+ V+ I+ALS TAEKCR+LVGE+ SSQSGKFTILNCFDMGSGTVAC VK
Sbjct: 1   MDFESRRLHLLISVVAIVALSFTAEKCRELVGEEGSSQSGKFTILNCFDMGSGTVACAVK 60

Query: 61  EGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAK 120
           EGVKLYFYNIR++H ERAR+ AIE A+VDA++QG+S  D+AK AQKEG KAAKLA RQAK
Sbjct: 61  EGVKLYFYNIRSSHAERARSQAIESALVDAVAQGMSPTDSAKHAQKEGKKAAKLASRQAK 120

Query: 121 RIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLG 180
           RIIGPII++GWDFFEAIYYGGT+TEGF+RGTGTLFG YAGGFLGE+RLGR GYLVGSHLG
Sbjct: 121 RIIGPIISSGWDFFEAIYYGGTVTEGFLRGTGTLFGTYAGGFLGEQRLGRIGYLVGSHLG 180

Query: 181 SWAGGRIGLMIYDVVNGVHFLLQFVQSEESEAHDAPVEEKFQDYEDSYANEAPSFWNSEA 240
           SW GGRIGLM+YDVVNGVH LLQFVQ+ E+E     V EK +  E S+  E P +  SE 
Sbjct: 181 SWVGGRIGLMVYDVVNGVHLLLQFVQTAETE-----VREKSERSESSFFGETPVYDGSEG 235

Query: 241 S---EDSKASDSSLYENSES---ETYENSEL 265
           S   E     +S  Y+++E    ETYE+SEL
Sbjct: 236 SSVYESPLDEESYAYKSTERQSYETYEDSEL 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542892|ref|XP_002512509.1| conserved hypothetical protein [Ricinus communis] gi|223548470|gb|EEF49961.1| conserved hypothetical protein [Ricinus communis]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/265 (73%), Positives = 226/265 (85%), Gaps = 4/265 (1%)

Query: 1   MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVK 60
            DF KKRVQ L+F+IGI+ALS+TA+KCRQLVGED+SSQSGKFTI NCFDM +GT+AC VK
Sbjct: 3   FDFQKKRVQLLIFMIGIVALSITADKCRQLVGEDSSSQSGKFTIFNCFDMSTGTLACTVK 62

Query: 61  EGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAK 120
           EGVKLYFYNIR+AHVE ARN+AIE+A++DAL QG+++ DAAKQAQKEGAKAAKLA RQAK
Sbjct: 63  EGVKLYFYNIRSAHVESARNLAIERALLDALGQGMAAKDAAKQAQKEGAKAAKLATRQAK 122

Query: 121 RIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLG 180
           RIIGPII++GWDFFEA+YYGGTITEGF+RGTGTL GAYAGGFLGE RLGRFGYLVGSHLG
Sbjct: 123 RIIGPIISSGWDFFEALYYGGTITEGFLRGTGTLGGAYAGGFLGEARLGRFGYLVGSHLG 182

Query: 181 SWAGGRIGLMIYDVVNGVHFLLQFVQSEESEAHDAPVEEKFQDYEDSYANEAPSFWNSEA 240
           SW GGRIGLM+YDVVNGVH+LLQ  Q+ +SE H+    EK    EDS   E+  + NSEA
Sbjct: 183 SWVGGRIGLMVYDVVNGVHYLLQVFQAGDSEVHEN--YEKVVVSEDSPVYESSEYTNSEA 240

Query: 241 SEDSKASDSSLYENSESETYENSEL 265
           SEDS   ++  YE+SES  Y+NSE 
Sbjct: 241 SEDSNVYEAPPYESSES--YDNSEF 263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496142|gb|AFK36137.1| unknown [Lotus japonicus]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/270 (69%), Positives = 217/270 (80%), Gaps = 6/270 (2%)

Query: 1   MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVK 60
           MDF  +R Q LL V  I+ LS+TAEKCRQLVGE+ SSQSGKFTILNCFDMGSGTVACGVK
Sbjct: 1   MDFQNRRFQVLLAVAAIVVLSITAEKCRQLVGEEGSSQSGKFTILNCFDMGSGTVACGVK 60

Query: 61  EGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAK 120
           EGVKLYFYNIR+AHVERAR+ AIE A+VDA+SQG+S  D+A   QKE  KAAKLA RQAK
Sbjct: 61  EGVKLYFYNIRSAHVERARHRAIESALVDAVSQGMSPKDSATYVQKESKKAAKLASRQAK 120

Query: 121 RIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLG 180
           RIIGPII++GWDFFEAIYYGGT+TEGF+RGTGTLFGAY GGFLGE++LGRFGYLVGSHLG
Sbjct: 121 RIIGPIISSGWDFFEAIYYGGTVTEGFLRGTGTLFGAYGGGFLGEQKLGRFGYLVGSHLG 180

Query: 181 SWAGGRIGLMIYDVVNGVHFLLQFVQSEESEAHDAPVEEKFQDYEDSYANEAPSFWNSEA 240
           SW GGRIGLM+YDV NGV+ LLQFVQ+ E E H A   E  +  E  +  E P + +SE 
Sbjct: 181 SWVGGRIGLMVYDVFNGVNLLLQFVQTGEIEVHKASANENSEAPEGYFFGEIPVYDSSEG 240

Query: 241 S---EDSKASDSSLYENS---ESETYENSE 264
           S   E S + +S++YE+S   ES  YE++E
Sbjct: 241 SNIYESSPSEESNIYESSPSEESNAYESTE 270

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450593|ref|XP_002282180.1| PREDICTED: uncharacterized protein LOC100249443 [Vitis vinifera]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/244 (74%), Positives = 210/244 (86%), Gaps = 5/244 (2%)

Query: 1   MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVK 60
           M+  +KRVQ L+FV+GI+ALS+TAEKCRQL+GED SSQSGKFT+LNCFDM SGT+AC VK
Sbjct: 1   MNLPRKRVQLLIFVVGIVALSITAEKCRQLLGEDGSSQSGKFTLLNCFDMSSGTLACTVK 60

Query: 61  EGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAK 120
           EGVKLYFYNIRA HVE+AR+ AIE A+ DAL+QGL++ DAAK AQKEGAKAAKLA RQAK
Sbjct: 61  EGVKLYFYNIRAVHVEKARHHAIEGALSDALTQGLNAKDAAKHAQKEGAKAAKLATRQAK 120

Query: 121 RIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLG 180
           RIIGPII++GWDFFEAIYYGGT+TEGF+RGTGTLFGAY GGFLGE+RLGRFGYLVGSHLG
Sbjct: 121 RIIGPIISSGWDFFEAIYYGGTLTEGFLRGTGTLFGAYTGGFLGEQRLGRFGYLVGSHLG 180

Query: 181 SWAGGRIGLMIYDVVNGVHFLLQFVQSEESEAHDAPVEEKFQDYEDSYANEAPSFWNSEA 240
           SW GGRIGLMIYDV NGV FLLQ VQ EE+     P++   +  ED  + E+P++ +SEA
Sbjct: 181 SWVGGRIGLMIYDVANGVQFLLQSVQPEET-----PMDMSSEVPEDPGSYESPAYESSEA 235

Query: 241 SEDS 244
            EDS
Sbjct: 236 QEDS 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125018|ref|XP_002319482.1| predicted protein [Populus trichocarpa] gi|222857858|gb|EEE95405.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/227 (76%), Positives = 205/227 (90%)

Query: 1   MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVK 60
           MDF KKRVQ L F++GIIALS+TAEKCRQLVG+D SSQSGKFTI +CFDMGSGT+AC VK
Sbjct: 1   MDFQKKRVQLLAFIVGIIALSITAEKCRQLVGDDNSSQSGKFTIFDCFDMGSGTLACAVK 60

Query: 61  EGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAK 120
           EGVKLY YNIR+AHVERARN+AIE++++DA+ QG+S  DAAK AQKEG KAAKLAK+QAK
Sbjct: 61  EGVKLYVYNIRSAHVERARNLAIERSLLDAVGQGMSPQDAAKTAQKEGTKAAKLAKQQAK 120

Query: 121 RIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLG 180
           RI+GP+I++GWDFFEA+YYGGTITEGF+RG+GTL GAYAGGFLG+ERLGR GYLVGSHLG
Sbjct: 121 RIVGPVISSGWDFFEALYYGGTITEGFLRGSGTLVGAYAGGFLGDERLGRVGYLVGSHLG 180

Query: 181 SWAGGRIGLMIYDVVNGVHFLLQFVQSEESEAHDAPVEEKFQDYEDS 227
           SW GGRIGLM+YDVV+GVH+LLQFVQ E+SE +++P +E  + YE S
Sbjct: 181 SWVGGRIGLMVYDVVDGVHYLLQFVQGEDSEVYESPPDESPESYEHS 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646276|gb|ACU23622.1| unknown [Glycine max]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/271 (68%), Positives = 217/271 (80%), Gaps = 11/271 (4%)

Query: 1   MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVK 60
           MDF  +R+  L+ V+ I ALS TAEKCR+LVGE+ SSQSGKFTILNCFDMGSGTVAC VK
Sbjct: 1   MDFESRRLHLLISVVAIGALSFTAEKCRELVGEEGSSQSGKFTILNCFDMGSGTVACAVK 60

Query: 61  EGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAK 120
           EGVKLYFYNIR++H ERAR+ AI+ A+VDA++QG+S  D+AK AQKEG KAAKLA RQAK
Sbjct: 61  EGVKLYFYNIRSSHAERARSQAIKSALVDAVAQGMSPTDSAKHAQKEGKKAAKLASRQAK 120

Query: 121 RIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLG 180
           RIIGPII++GWDFFEAIYYGGT+TEGF+RGTGTLFG YAGGFLGE+RLGR GYLVGSHLG
Sbjct: 121 RIIGPIISSGWDFFEAIYYGGTVTEGFLRGTGTLFGTYAGGFLGEQRLGRIGYLVGSHLG 180

Query: 181 SWAGGRIGLMIYDVVNGVHFLLQFVQSEESEAHDAPVEEKFQDYEDSYANEAPSFWNSEA 240
           SW GGRIGLM+YDVVNGVH LLQFVQ+ E+E     V EK +  E S+  E P +  SE 
Sbjct: 181 SWVGGRIGLMVYDVVNGVHLLLQFVQTAETE-----VREKSERSESSFFGETPVYDGSEG 235

Query: 241 S---EDSKASDSSLYENSES---ETYENSEL 265
           S   E     +S  Y+++E    ETYE+SEL
Sbjct: 236 SSVYESPLDEESYAYKSTERQSYETYEDSEL 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248534|ref|NP_001239898.1| uncharacterized protein LOC100786994 precursor [Glycine max] gi|255639709|gb|ACU20148.1| unknown [Glycine max]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/271 (68%), Positives = 217/271 (80%), Gaps = 10/271 (3%)

Query: 1   MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVK 60
           MDF  +R+  L+ V+ IIALS TAEKCR+LVGE+ SSQSGKFTILNCFDMGSGTVAC VK
Sbjct: 1   MDFESRRLHLLISVVAIIALSFTAEKCRELVGEEGSSQSGKFTILNCFDMGSGTVACAVK 60

Query: 61  EGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAK 120
           EGVKLYFYNIR++H ERAR+ AIE A+VDA++QG+S  D+AK AQKEG KAAKLA RQAK
Sbjct: 61  EGVKLYFYNIRSSHAERARSQAIESALVDAVTQGMSPTDSAKHAQKEGKKAAKLASRQAK 120

Query: 121 RIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLG 180
           RIIGPII++GWDFFEAIYYGGT+TEGF+RGTGTLFG YAGGFLGE+RLGR GYL+GSHLG
Sbjct: 121 RIIGPIISSGWDFFEAIYYGGTVTEGFLRGTGTLFGTYAGGFLGEQRLGRIGYLLGSHLG 180

Query: 181 SWAGGRIGLMIYDVVNGVHFLLQFVQSEESEAHDAPVEEKFQDYEDSYANEAPSFWNSEA 240
           SW GGRIGLM+YDVVNGVH LLQFVQ+ E E H+     +      S+  E P + +SE 
Sbjct: 181 SWVGGRIGLMVYDVVNGVHLLLQFVQTGEIEVHEKSKRSE----SSSFFGETPVYDSSEG 236

Query: 241 S---EDSKASDSSLYENSES---ETYENSEL 265
           S   E   + +S  YE++E    ETYE+SEL
Sbjct: 237 SGVYESPPSEESYAYESTERQSYETYEDSEL 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454014|ref|XP_004144751.1| PREDICTED: uncharacterized protein LOC101204135 [Cucumis sativus] gi|449524962|ref|XP_004169490.1| PREDICTED: uncharacterized protein LOC101228818 [Cucumis sativus]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/268 (68%), Positives = 216/268 (80%), Gaps = 5/268 (1%)

Query: 1   MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVK 60
            DF KKR+Q L+F+IG I LS TAEKCR LVGE+ASSQSGKFT LNCFDMGSG+VACGVK
Sbjct: 5   FDFEKKRIQLLVFIIGTIVLSFTAEKCRHLVGEEASSQSGKFTFLNCFDMGSGSVACGVK 64

Query: 61  EGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAK 120
           EGVKLYFYNIR+AHVE  R+ A+E A+ DA++QG+S+ +AAK AQKEG KAAKLAKRQAK
Sbjct: 65  EGVKLYFYNIRSAHVESVRHTALETALADAITQGMSAKEAAKHAQKEGVKAAKLAKRQAK 124

Query: 121 RIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLG 180
           RIIGPII++GWDFFEA+YYGGTITEGF+RG+GTLFGAYAGGF+G++RLGRFGYL+GSHLG
Sbjct: 125 RIIGPIISSGWDFFEALYYGGTITEGFLRGSGTLFGAYAGGFIGDQRLGRFGYLIGSHLG 184

Query: 181 SWAGGRIGLMIYDVVNGVHFLLQFVQ---SEESEAHDAPVEEKFQDYEDSYANEAPSFWN 237
           SW GGRIGLM+YDVVNGVHFLL FVQ     E    +A   E     + S+ N+AP + N
Sbjct: 185 SWVGGRIGLMVYDVVNGVHFLLNFVQGEEESEVHEKEAAYVENEASSDGSHVNDAPIYNN 244

Query: 238 SEASEDSKASDSSLYENSESETYENSEL 265
            E  E+S   +SS   + ES  +ENSE 
Sbjct: 245 LEDIEESYHYESS--PSDESLDHENSEF 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:4515102688	270	AT1G56423 "AT1G56423" [Arabido	0.879	0.862	0.579	1.1e-73

TAIR|locus:4515102688 AT1G56423 "AT1G56423" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 138/238 (57%), Positives = 178/238 (74%)

Query:     1 MDFGKKRVQFLLFVIGIIALSLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVK 60
             MDF  +RVQFLLF IG+IALS+TAEKCR+LVG++A+S+SG+FT LNCFDM SGT+AC VK
Sbjct:     1 MDFRSRRVQFLLFAIGLIALSMTAEKCRELVGQEAASKSGQFTFLNCFDMSSGTLACAVK 60

Query:    61 EGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDXXXXXXXXXXXXXXXXXXXXX 120
             EGVKLYFYNIR+ HVE+ARNVAIEKA+ +AL  G+ + +                     
Sbjct:    61 EGVKLYFYNIRSIHVEKARNVAIEKALHEALDNGMLAKEAAKEGQRAGEKAAKLATRQAK 120

Query:   121 XIIGPIIAAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAGGFLGEERLGRFGYLVGSHLG 180
              IIGPI+AAGWDFFEA+Y+GGT+TEGF+RGTGT+ GAY+GG++GE+R GRFGYLVGS LG
Sbjct:   121 RIIGPIVAAGWDFFEALYFGGTLTEGFLRGTGTMVGAYSGGYVGEQRFGRFGYLVGSTLG 180

Query:   181 SWAGGRIGLMIYDVVNGVHFLLQFVQS----EESEAHDAPVEEK-FQDYEDSYANEAP 233
             +W G R+GLM+YDVVNGV+F  +  QS    E+   +++P +   ++  ED    E+P
Sbjct:   181 NWVGARVGLMVYDVVNGVNFFYETYQSGEIYEDQSTNESPEDRSTYESREDPSTYESP 238


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.141   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      265       215   0.00087  112 3  11 22  0.50    32
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  171 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.23u 0.07s 18.30t   Elapsed:  00:00:01
  Total cpu time:  18.23u 0.07s 18.30t   Elapsed:  00:00:01
  Start:  Fri May 10 17:14:59 2013   End:  Fri May 10 17:15:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0133008901 hypothetical protein (259 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
TIGR01641	108	phageSPP1_gp7 phage putative head morphogenesis pr	82.03

>TIGR01641 phageSPP1_gp7 phage putative head morphogenesis protein, SPP1 gp7 family

Probab=82.03  E-value=2.1  Score=32.28  Aligned_cols=54  Identities=24%  Similarity=0.353  Sum_probs=38.6

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhc-chhhhhh
Q 024641           83 IEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAA-GWDFFEA  136 (265)
Q Consensus        83 ~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiiss-gWDfFEa  136 (265)
                      +|.+|.+++.+|.++++-||.-++........|.+-|+-=+.-+.+. .|+.++.
T Consensus         1 ~~~~l~~gi~~G~~~~~iak~i~~~~~~~~~~A~~iarTe~~~a~~~~~~~~~~~   55 (108)
T TIGR01641         1 VEDILADGVQRGLGPNELAKRLRKELGVQKHYAQRLARTETARIYNQTKLERYKK   55 (108)
T ss_pred             ChHHHHHHHHcCCCHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999998887666555555555545544443 3555554

This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
4aq4_A	419	SN-glycerol-3-phosphate-binding periplasmic prote;	81.36

>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}

Probab=81.36  E-value=3  Score=34.03  Aligned_cols=38  Identities=11%  Similarity=0.196  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 024641           81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQ  118 (265)
Q Consensus        81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQ  118 (265)
                      .++..+++..+...++++||.+++|++..+.-|...+.
T Consensus       379 ~~~~~~~~~~~~g~~t~e~al~~~~~~~~~~L~~y~k~  416 (419)
T 4aq4_A          379 VIVDEELESVWTGKKTPQQALDTAVERGNQLLRRFEKS  416 (419)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788899999999999999999999988877665443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00