Citrus Sinensis ID: 024642

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVSIFKS
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHcccccHHHccccccEEEEEEccccccccccEEEEcccccccHHHHHHccccHHHHHHcccccccccccHHHHHHHccccccccccccHHHHHHccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEcHHcHHHHHHHccHHHHHEEEcccccEEEEEEccccccccccEcccccccccccccccHHHHHHHHHccccEEEEEcccccccccccccccccccccHHHHccccccccHHHEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccHcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MYEFSSATRKTIASLNSSMAMTYYyatkptwkivttdctcsissccfnffsnvtnqhsktlhFTNLTHIIKNKCTWVIKAKGNDEAIAHVKekkndnaqttsESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFvmsaipflpfvfwarddvktrnaGIELGLWVSLGYFVEALGlltsdagrASFISLFTVIVVplfdgmlgaiipahTWFGVLISALGVGmlecsgsppsvsifks
Flexible Loop (DISEMBL)
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHvkekkndnaqttsesvqiitkrpfwkRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECsgsppsvsifks
Low Complexity Region (SEG)
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVttdctcsissccfnffsnvtnQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVSIFKS
Disordered region (IsUnstruct)
*****************SMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIA****************VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLEC************
Disordered Region (DISOPRED)
*************SLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNV*********************************************************************KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVSIFKS
Disordered Region (DISEMBL)
*********KTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEK***********VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGS*********
Disordered Region (DISPRO)
*Y*FSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTN**SKTLHFTNLTHIIKNKCTWVIKAKG****************************RPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSV*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVSIFKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
O29470	308	Uncharacterized transport	yes	no	0.366	0.314	0.298	5e-05

>sp|O29470|Y788_ARCFU Uncharacterized transporter AF_0788 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0788 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFV-FWARDDVK 180
           K++ +   L ++ +++ S  P++K A + M P +F  VRF ++ + FLPF+  W   D  
Sbjct: 39  KRLYADLGLALVALIWGSTFPVVKIALDSMSPFAFNTVRFFIACLFFLPFLKGWDFKD-- 96

Query: 181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPL 224
               G ++G+   LGY  + +GL  + A  A FI+   V++ P+
Sbjct: 97  ----GFKIGIASFLGYTFQTVGLDYTTATNAGFITSTYVVLAPI 136

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
225456145	461	PREDICTED: uncharacterized protein LOC10	0.886	0.509	0.535	1e-62
225424254	460	PREDICTED: uncharacterized transporter A	0.584	0.336	0.709	6e-60
255570144	458	conserved hypothetical protein [Ricinus	0.573	0.331	0.703	4e-58
449449134	464	PREDICTED: uncharacterized protein LOC10	0.588	0.336	0.653	1e-54
449520623	452	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.588	0.345	0.641	1e-52
411113256	436	integral membrane protein [Triticum aest	0.633	0.385	0.571	2e-52
326490417	430	predicted protein [Hordeum vulgare subsp	0.633	0.390	0.578	4e-52
310656745	395	EamA domain-containing protein [Triticum	0.633	0.425	0.565	6e-52
411113253	440	integral membrane protein [Triticum aest	0.633	0.381	0.565	6e-52
411113263	440	integral membrane protein [Triticum urar	0.633	0.381	0.565	7e-52

>gi|225456145|ref|XP_002278448.1| PREDICTED: uncharacterized protein LOC100247357 [Vitis vinifera] gi|297734319|emb|CBI15566.3| unnamed protein product [Vitis vinifera]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 136/254 (53%), Positives = 171/254 (67%), Gaps = 19/254 (7%)

Query: 26  ATKPTWKIVTTDCTCSISS--CCFNFFSNVTNQHSKTLHFTNLTHIIKN----------K 73
           AT P WK + T  +   S+  CCF FFS   +  +K   F   + ++ N          K
Sbjct: 3   ATYPRWKTIATTSSSDSSTLPCCF-FFSTSPSPRTKRGRFATFSSLLLNPHEYHLGPAKK 61

Query: 74  CTWVIKAKGNDEAIAHVKEKKNDNAQTTSE-----SVQIITK-RPFWKRVLFASKKIRSI 127
              V   + + + ++ + +K    A+  ++     S+Q   K RP W+RVLFASKK++SI
Sbjct: 62  KKSVEIGRPHQQTVSIIHDKCISKAKVKAKFDWKKSIQKGAKSRPLWRRVLFASKKMKSI 121

Query: 128 FLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIE 187
            LLNV+TIVYAS+I ++K  E IM PA+F AVRF +SAIPFLPFVF AR DV+TRNAG+E
Sbjct: 122 ILLNVVTIVYASNIAVVKEVETIMDPAAFSAVRFAVSAIPFLPFVFRARGDVQTRNAGLE 181

Query: 188 LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALG 247
           LGLW+SLGY  EALGLLTS+AGRASF S  TVIVVPL D MLGAI+PA TWFGVL+S LG
Sbjct: 182 LGLWISLGYLAEALGLLTSEAGRASFFSFITVIVVPLLDSMLGAIVPARTWFGVLMSVLG 241

Query: 248 VGMLECSGSPPSVS 261
           V MLECSGSPP+V 
Sbjct: 242 VAMLECSGSPPNVG 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424254|ref|XP_002280818.1| PREDICTED: uncharacterized transporter AF_0788 [Vitis vinifera] gi|297737689|emb|CBI26890.3| unnamed protein product [Vitis vinifera]

 Score =  236 bits (603), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 110/155 (70%), Positives = 132/155 (85%)

Query: 107 IITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAI 166
           +  +R  W+R+LFAS+K+R I LLNV+T+VYAS+IP++K  E IM PA+F AVRFV+SAI
Sbjct: 107 LFGRRSLWRRILFASRKVRGIILLNVLTVVYASNIPVVKEVEAIMDPATFAAVRFVVSAI 166

Query: 167 PFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFD 226
           PF+PFV  AR DV+TRNAGIELG WVSLGY +++LGLLTSDAGRASF+S+FTVIVVPL D
Sbjct: 167 PFIPFVVRARGDVQTRNAGIELGFWVSLGYLMQSLGLLTSDAGRASFLSMFTVIVVPLLD 226

Query: 227 GMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVS 261
           GMLGA +PAHTWFG L+S LGV MLE SGSPPSV 
Sbjct: 227 GMLGATVPAHTWFGALMSILGVAMLESSGSPPSVG 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570144|ref|XP_002526034.1| conserved hypothetical protein [Ricinus communis] gi|223534681|gb|EEF36374.1| conserved hypothetical protein [Ricinus communis]

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 107/152 (70%), Positives = 129/152 (84%)

Query: 110 KRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFL 169
           ++  WKR++FAS K+RSI LLNVIT+VYAS+IP++K  E IM PA+F  VRF +SAIPF+
Sbjct: 104 RKSLWKRIVFASTKVRSIILLNVITVVYASNIPVVKEVEAIMDPATFTVVRFAVSAIPFI 163

Query: 170 PFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML 229
           PFVF AR DVKTRNAGIELG WVSLGY  +ALGL+TSDAGRASFIS+FTVI+VPL DGML
Sbjct: 164 PFVFQARGDVKTRNAGIELGFWVSLGYLTQALGLMTSDAGRASFISMFTVILVPLLDGML 223

Query: 230 GAIIPAHTWFGVLISALGVGMLECSGSPPSVS 261
           GA++PA TWFG L+S +GV MLE SGSPP++ 
Sbjct: 224 GAVVPARTWFGALMSIIGVAMLEFSGSPPNIG 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449134|ref|XP_004142320.1| PREDICTED: uncharacterized protein LOC101219169 [Cucumis sativus]

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/156 (65%), Positives = 125/156 (80%)

Query: 105 VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMS 164
           V +  KR  W+R+ FASKK+RSI LLNV+TIVYAS IP++K  EE++ PA+F  VRF M+
Sbjct: 95  VSLFDKRSLWRRIFFASKKVRSIILLNVVTIVYASSIPVVKEVEELVDPATFNVVRFAMT 154

Query: 165 AIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPL 224
           AIPF+P V    DDV+ R+AGIELG WVSLGY ++A GL+TSDAGRASFIS+ TV+VVPL
Sbjct: 155 AIPFVPLVLDKWDDVEIRDAGIELGFWVSLGYLMQAFGLITSDAGRASFISMLTVLVVPL 214

Query: 225 FDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSV 260
            DG+LGAI+PA TWFG L+S +GV MLE SGSPP V
Sbjct: 215 LDGLLGAIVPARTWFGALMSVVGVAMLESSGSPPCV 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520623|ref|XP_004167333.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229323 [Cucumis sativus]

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 122/156 (78%)

Query: 105 VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMS 164
           V +  KR  W R+ FASKK+RSI LLNV+TIVYAS+IP +K  EE++ PA+F  VRF M+
Sbjct: 95  VSLFDKRSLWXRIFFASKKVRSIILLNVVTIVYASNIPFVKEVEELVDPATFNVVRFAMT 154

Query: 165 AIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPL 224
           AIPF+P V    DDV+ R+ GIELG WVSLGY ++A GL+TSDAGRASFIS+ TV+VVPL
Sbjct: 155 AIPFVPLVLDKWDDVEIRDTGIELGFWVSLGYLMQAFGLITSDAGRASFISMLTVLVVPL 214

Query: 225 FDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSV 260
            DG+LGAI+PA TWFG L+S +GV ML  SGSPP V
Sbjct: 215 LDGLLGAIVPARTWFGALMSVVGVAMLASSGSPPCV 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113256|gb|AFW04247.1| integral membrane protein [Triticum aestivum]

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/168 (57%), Positives = 126/168 (75%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           + +  +   ++ + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 63  REEGRKEEGDASKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 122

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPF+PFV  A  D +TRN G+ELGLWVSL Y  +A+GL+TS+AGRASF
Sbjct: 123 AVFNMVRFVIAAIPFIPFVIRAFGDRRTRNGGLELGLWVSLAYLAQAIGLITSEAGRASF 182

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVS 261
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP V 
Sbjct: 183 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSIIGVGLLECGGSPPCVG 230

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326490417|dbj|BAJ84872.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 99/171 (57%), Positives = 125/171 (73%), Gaps = 3/171 (1%)

Query: 91  KEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEI 150
           +E + +  +   + V+    RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +
Sbjct: 62  EEGRKEKGRDVGKRVR---GRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEAL 118

Query: 151 MHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGR 210
             PA F  VRFV++AIPFLPFV  A  D +TRN G+ELGLWVSL Y  +A+GL TS+AGR
Sbjct: 119 TEPAVFNMVRFVIAAIPFLPFVIRAFGDRRTRNGGLELGLWVSLAYLAQAIGLTTSEAGR 178

Query: 211 ASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVS 261
           ASFI+ FTVIVVPL DG  GA IP  TWFG ++S +GVG+LEC GSPP V 
Sbjct: 179 ASFIAAFTVIVVPLIDGFFGASIPMLTWFGAIVSIIGVGLLECGGSPPCVG 229

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310656745|gb|ADP02182.1| EamA domain-containing protein [Triticum aestivum] gi|310656768|gb|ADP02200.1| DUF6 domain-containing protein [Aegilops tauschii]

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 95/168 (56%), Positives = 124/168 (73%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           + +  +      + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 67  REEGGKEKGGVSKRVHGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 126

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPF+PFV  A  D +TRN G+ELG+WVSL Y  +A+GL+TS+AGRASF
Sbjct: 127 AVFNMVRFVIAAIPFIPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIGLITSEAGRASF 186

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVS 261
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP V 
Sbjct: 187 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSVIGVGLLECGGSPPCVG 234

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113253|gb|AFW04245.1| integral membrane protein [Triticum aestivum]

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 95/168 (56%), Positives = 125/168 (74%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           +++  +      + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 67  RDEGGKEKGGVSKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 126

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPFLPFV  A  D +TRN G+ELG+WVSL Y  +A+GL+TS+AGRASF
Sbjct: 127 AVFNMVRFVIAAIPFLPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIGLITSEAGRASF 186

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVS 261
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP + 
Sbjct: 187 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSIIGVGLLECGGSPPCIG 234

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113263|gb|AFW04252.1| integral membrane protein [Triticum urartu]

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 95/168 (56%), Positives = 125/168 (74%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           +++  +      + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 67  RDEGGKEKGGVSKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 126

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPFLPFV  A  D +TRN G+ELG+WVSL Y  +A+GL+TS+AGRASF
Sbjct: 127 AVFNMVRFVIAAIPFLPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIGLITSEAGRASF 186

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVS 261
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP + 
Sbjct: 187 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSIIGVGLLECGGSPPCIG 234

Source: Triticum urartu

Species: Triticum urartu

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
UNIPROTKB|Q48AQ1	322	CPS_0094 "Membrane protein" [C	0.490	0.403	0.267	1.1e-05
TIGR_CMR|CPS_0094	322	CPS_0094 "membrane protein" [C	0.490	0.403	0.267	1.1e-05
UNIPROTKB|Q4KHB5	301	PFL_1237 "Putative membrane pr	0.513	0.451	0.241	3.6e-05
UNIPROTKB|Q3AES3	298	CHY_0503 "Putative membrane pr	0.475	0.422	0.257	0.0001
TIGR_CMR|CHY_0503	298	CHY_0503 "putative membrane pr	0.475	0.422	0.257	0.0001

UNIPROTKB|Q48AQ1 CPS_0094 "Membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 38/142 (26%), Positives = 71/142 (50%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---- 176
             S +I +I LL V  I     +PI   A E+M   +F A+RF ++ +  LP +++ +    
Sbjct:     5 SPRIATILLLIVCFIWGVEFVPI-DLAIEVMPTNTFNAIRFAVATLSMLPLLWFVQKKNK 63

Query:   177 ------DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLG 230
                   D V    +G+ LG ++ +G++ +  G+  +    A FI+   V +VP+   ++ 
Sbjct:    64 GNSKPIDYVLLIRSGMLLGFFLFIGFYTQTEGMRFTTVTNAGFITGLCVPLVPVLGFLIF 123

Query:   231 A-IIPAHTWFGVLISALGVGML 251
               ++P   W GV+ +  G+ ML
Sbjct:   124 RNVVPKSVWIGVVTATAGLYML 145

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_0094 CPS_0094 "membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 38/142 (26%), Positives = 71/142 (50%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---- 176
             S +I +I LL V  I     +PI   A E+M   +F A+RF ++ +  LP +++ +    
Sbjct:     5 SPRIATILLLIVCFIWGVEFVPI-DLAIEVMPTNTFNAIRFAVATLSMLPLLWFVQKKNK 63

Query:   177 ------DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLG 230
                   D V    +G+ LG ++ +G++ +  G+  +    A FI+   V +VP+   ++ 
Sbjct:    64 GNSKPIDYVLLIRSGMLLGFFLFIGFYTQTEGMRFTTVTNAGFITGLCVPLVPVLGFLIF 123

Query:   231 A-IIPAHTWFGVLISALGVGML 251
               ++P   W GV+ +  G+ ML
Sbjct:   124 RNVVPKSVWIGVVTATAGLYML 145

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q4KHB5 PFL_1237 "Putative membrane protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 121 (47.7 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 35/145 (24%), Positives = 70/145 (48%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---- 176
             S+ +R+  L+ +  +++ S      +    + P  +  +RF + ++  LP V        
Sbjct:     3 SQALRADVLMLITAVIWGSAFVAQTSGMNHIGPFLYSGLRFALGSLCLLPLVLRKTPTDR 62

Query:   177 --DDVKTRN---AGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA 231
               + +  R     G+ +GL ++LG  ++ +GL+ +    A FI+   VIVVPL   ++G 
Sbjct:    63 QPEPLLNRGLLLGGVLMGLALALGINLQQVGLMFTTVTNAGFITGLYVIVVPLLGLLIGH 122

Query:   232 IIPAHTWFGVLISALGVGMLECSGS 256
                  TW G +++ +G+ +L  S S
Sbjct:   123 KTGLGTWLGAVLAVVGMFLLSVSDS 147

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AES3 CHY_0503 "Putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 117 (46.2 bits), Expect = 0.00010, P = 0.00010
 Identities = 34/132 (25%), Positives = 65/132 (49%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK 180
             +K++ +   L V+T  + +   I+K     + P SF + RF++S    LP +   ++   
Sbjct:     5 TKQLLADISLIVVTAFWGTTFVIIKNILANIEPFSFLSFRFLLSTFFLLPLLL-QKEGFS 63

Query:   181 TRNA--GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA--IIPAH 236
              +    G   G ++ LGY ++ +GL  + A  + FI+   V++VP+   +L    + P  
Sbjct:    64 PKGVFFGSIAGFFLWLGYILQTIGLKYTSAANSGFITGLAVVMVPVLSSILNKKPVTPG- 122

Query:   237 TWFGVLISALGV 248
               FG  +S LG+
Sbjct:   123 VIFGTGLSFLGL 134

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0503 CHY_0503 "putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 117 (46.2 bits), Expect = 0.00010, P = 0.00010
 Identities = 34/132 (25%), Positives = 65/132 (49%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK 180
             +K++ +   L V+T  + +   I+K     + P SF + RF++S    LP +   ++   
Sbjct:     5 TKQLLADISLIVVTAFWGTTFVIIKNILANIEPFSFLSFRFLLSTFFLLPLLL-QKEGFS 63

Query:   181 TRNA--GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA--IIPAH 236
              +    G   G ++ LGY ++ +GL  + A  + FI+   V++VP+   +L    + P  
Sbjct:    64 PKGVFFGSIAGFFLWLGYILQTIGLKYTSAANSGFITGLAVVMVPVLSSILNKKPVTPG- 122

Query:   237 TWFGVLISALGV 248
               FG  +S LG+
Sbjct:   123 VIFGTGLSFLGL 134


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.135   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      265       244   0.00098  113 3  11 22  0.37    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  183 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.34u 0.08s 17.42t   Elapsed:  00:00:01
  Total cpu time:  17.34u 0.08s 17.42t   Elapsed:  00:00:01
  Start:  Fri May 10 17:15:56 2013   End:  Fri May 10 17:15:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017821001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (461 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
pfam00892	126	pfam00892, EamA, EamA-like transporter family	0.001

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 135 IVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIEL------ 188
           + +A      K   E + P +F A RF+++ I  +  +F  R      +    L      
Sbjct: 1   LSWALYFVFSKKLLERISPLTFTAYRFLIAGILLILLLFLLRKPFALLSLKAILALLYLG 60

Query: 189 GLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALG 247
               +LGY +    L    A  AS I+  + +   +   + LG  +      G+++  LG
Sbjct: 61  LFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLG 120

Query: 248 VGML 251
           V ++
Sbjct: 121 VLLI 124

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
PRK11272	292	putative DMT superfamily transporter inner membran	99.72
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.71
PRK11689	295	aromatic amino acid exporter; Provisional	99.7
PRK15430	296	putative chloramphenical resistance permease RarD;	99.69
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.65
PLN00411	358	nodulin MtN21 family protein; Provisional	99.62
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.57
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.49
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.48
COG2510	140	Predicted membrane protein [Function unknown]	99.37
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.33
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.32
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.19
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.17
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.14
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.14
COG2962	293	RarD Predicted permeases [General function predict	99.07
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.94
PRK11689	295	aromatic amino acid exporter; Provisional	98.9
PRK11272	292	putative DMT superfamily transporter inner membran	98.86
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.84
PLN00411	358	nodulin MtN21 family protein; Provisional	98.8
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.66
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.62
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.59
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.56
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.54
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.5
PRK15430	296	putative chloramphenical resistance permease RarD;	98.49
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.35
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.32
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.31
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.22
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.13
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.07
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.89
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.67
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.62
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.56
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.26
PRK11431	105	multidrug efflux system protein; Provisional	97.25
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.24
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.23
COG2076	106	EmrE Membrane transporters of cations and cationic	97.21
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.2
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.18
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.0
KOG2765	416	consensus Predicted membrane protein [Function unk	96.84
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	96.73
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.58
COG2962	293	RarD Predicted permeases [General function predict	96.16
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.07
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.0
PRK13499	345	rhamnose-proton symporter; Provisional	95.95
PRK13499	345	rhamnose-proton symporter; Provisional	95.83
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.78
KOG4510	346	consensus Permease of the drug/metabolite transpor	95.31
KOG2766	336	consensus Predicted membrane protein [Function unk	95.18
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	94.66
KOG1443	349	consensus Predicted integral membrane protein [Fun	93.85
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	93.35
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	93.1
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	93.03
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	92.7
KOG3912	372	consensus Predicted integral membrane protein [Gen	91.67
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	91.11
KOG4831	125	consensus Unnamed protein [Function unknown]	90.7
KOG1581	327	consensus UDP-galactose transporter related protei	90.45
KOG2765	416	consensus Predicted membrane protein [Function unk	89.98
PRK02237	109	hypothetical protein; Provisional	89.69
KOG2922	335	consensus Uncharacterized conserved protein [Funct	87.98
KOG1580	337	consensus UDP-galactose transporter related protei	87.79
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	87.56
KOG1580	337	consensus UDP-galactose transporter related protei	85.97
COG1742	109	Uncharacterized conserved protein [Function unknow	84.58
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	80.38

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.72  E-value=1.9e-16  Score=145.08  Aligned_cols=138  Identities=17%  Similarity=0.304  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc---CChhhHHHHHHHHHHHH-HHHHHHHHH
Q 024642          127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVS-LGYFVEALG  202 (265)
Q Consensus       127 ~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r---~~~r~~~~~~llGvll~-~~~~l~~~g  202 (265)
                      .+.+++..++||++++++|...++++|..++++|+++++++++++...++   .+++++......|.+.. ..+.+++.+
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   89 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTVA   89 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788999999999999999999999999999999999988876543   24566777778888753 445677888


Q ss_pred             H-hhcchhHHHHHHHhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhHhhcCCC-CC-Cccccc
Q 024642          203 L-LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGS-PP-SVSIFK  264 (265)
Q Consensus       203 L-~~tsa~~AavL~~l~Pvfv~lla~llker~s~~~~iGllLa~iGv~LL~~~G~-~~-~lGDll  264 (265)
                      . +++++++++++.++.|++++++++++|||+++++++|++++++|+.++..+++ +. ..||++
T Consensus        90 ~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~  154 (292)
T PRK11272         90 EHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAIL  154 (292)
T ss_pred             HHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHH
Confidence            8 89999999999999999999999888999999999999999999998865432 22 246653

>TIGR00688 rarD rarD protein

Probab=99.71  E-value=4.1e-16  Score=139.64  Aligned_cols=129  Identities=15%  Similarity=0.130  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcC-----------Chhh-HHHHHHHHHHH
Q 024642          125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD-----------DVKT-RNAGIELGLWV  192 (265)
Q Consensus       125 ~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~-----------~~r~-~~~~~llGvll  192 (265)
                      +|++++++++++||++++++|. .++++|..+.++|+++++++++++...+++           ++++ +....+.|++.
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   80 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI   80 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            5788999999999999999998 567999999999999999888776532210           1222 23345667766


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       193 ~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                      ...+.+++.|++++++++++++.+++|+++++++++ +|||++++++++++++++|+.++..+
T Consensus        81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~  143 (256)
T TIGR00688        81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVL  143 (256)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            677788999999999999999999999999999987 79999999999999999999887543

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.70  E-value=3.4e-16  Score=143.69  Aligned_cols=131  Identities=15%  Similarity=0.119  Sum_probs=102.8

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHH-HHHHHHHHHH
Q 024642          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEALG  202 (265)
Q Consensus       124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll-~~~~~l~~~g  202 (265)
                      .++++++++++++||++++++|.++++++|+.++++|+.+|+++++++...++. ++..+...+.|.+. ...+.+++.|
T Consensus         3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~a   81 (295)
T PRK11689          3 QKATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRL-RQFPKRYLLAGGLLFVSYEICLALS   81 (295)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHcccccc-ccccHHHHHHHhHHHHHHHHHHHHH
Confidence            567888999999999999999999999999999999999999998876432221 12222223333333 3333455566


Q ss_pred             Hhh----cchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642          203 LLT----SDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG  255 (265)
Q Consensus       203 L~~----tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G  255 (265)
                      +++    +++++++++.+++|+++++++++ +|||+++++++|++++++|++++..++
T Consensus        82 ~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~  139 (295)
T PRK11689         82 LGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGD  139 (295)
T ss_pred             HHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCC
Confidence            654    57889999999999999999997 699999999999999999999887653

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.69  E-value=1.4e-15  Score=139.76  Aligned_cols=133  Identities=11%  Similarity=0.105  Sum_probs=109.6

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcC---------ChhhHHHHHHHHH
Q 024642          120 ASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD---------DVKTRNAGIELGL  190 (265)
Q Consensus       120 m~~~~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~---------~~r~~~~~~llGv  190 (265)
                      |.++.+|.+++++++++||.+++++|.. ++++|..+.++|++++.++++++...+++         +++++...+..+.
T Consensus         3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (296)
T PRK15430          3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV   81 (296)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence            5566899999999999999999999985 68999999999999999888776643321         1222222222233


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642          191 WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (265)
Q Consensus       191 ll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~  253 (265)
                      .....+.+++.|++++++++++++.++.|+++.+++++ +|||+++++++|++++++|++++..
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            34556788899999999999999999999999999987 6999999999999999999998864

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.65  E-value=4.5e-15  Score=136.41  Aligned_cols=125  Identities=18%  Similarity=0.260  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHH-HHHHHHHHHHhh
Q 024642          127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVS-LGYFVEALGLLT  205 (265)
Q Consensus       127 ~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll~-~~~~l~~~gL~~  205 (265)
                      .++.++++++||++++++|..+++++|..+.++|+++++++++++..++|.+++   .....|++.. ..+.+++.++++
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~   82 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLN---LLLGYGLTISFGQFAFLFCAINF   82 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence            456788899999999999999999999999999999998877766544333332   2333455433 234456788888


Q ss_pred             -cchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          206 -SDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       206 -tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                       .++++++++.+++|+++++++++ +|||+++++++|++++++|+.++..+
T Consensus        83 ~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         83 GMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             cCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence             58899999999999999999987 79999999999999999999988754

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.62  E-value=1.7e-14  Score=137.12  Aligned_cols=132  Identities=16%  Similarity=0.157  Sum_probs=114.8

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHhh-ccCHHHHHHHHHHHHHHHHHHHHhhh-c-C-----ChhhHHHHHHHHHHHHH
Q 024642          123 KIRSIFLLNVITIVYASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWA-R-D-----DVKTRNAGIELGLWVSL  194 (265)
Q Consensus       123 ~~~g~lllll~~llWGss~i~~K~~l~-~isP~~l~~lRfllAallLl~~~~~~-r-~-----~~r~~~~~~llGvll~~  194 (265)
                      +.+.++.+++.-+..+...++.|.+++ .++|+.++++|+.+|+++++++.+.+ | +     +++++....++|++...
T Consensus        11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~   90 (358)
T PLN00411         11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM   90 (358)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence            578899999999999999999999987 89999999999999999999887643 1 1     24566777778877644


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHHh-------cCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          195 GYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-------GAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       195 ~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~ll-------ker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                      .+.+++.|++|+++++++++.+++|+++.++++++       +||+++++++|++++++|+.++...
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~  157 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY  157 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence            55678899999999999999999999999999875       8999999999999999999987753

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.57  E-value=3.6e-14  Score=126.08  Aligned_cols=118  Identities=13%  Similarity=0.134  Sum_probs=100.6

Q ss_pred             HhhhHHHHHHHhh-ccCHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHH-HHHHHHHHHHHhhcchhHHHHH
Q 024642          137 YASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEALGLLTSDAGRASFI  214 (265)
Q Consensus       137 WGss~i~~K~~l~-~isP~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll-~~~~~l~~~gL~~tsa~~AavL  214 (265)
                      ||.+++..|..++ ..||..+.+.|++.+.+++.++...+ ++++++...++.|.+. ...+.+++.|++++++++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii   79 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALL   79 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence            9999999999887 67888889999988888887766554 4556666666676654 5666788899999999999999


Q ss_pred             HHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642          215 SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG  255 (265)
Q Consensus       215 ~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G  255 (265)
                      .++.|+++++++++ +|||+++++++|++++++|+.++..++
T Consensus        80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~  121 (260)
T TIGR00950        80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG  121 (260)
T ss_pred             HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC
Confidence            99999999999997 699999999999999999999887654

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.49  E-value=4.5e-13  Score=104.90  Aligned_cols=117  Identities=18%  Similarity=0.250  Sum_probs=99.3

Q ss_pred             HHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhh--c----CChhhHHHHHHHHHH-HHHHHHHHHHHHhhcc
Q 024642          135 IVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA--R----DDVKTRNAGIELGLW-VSLGYFVEALGLLTSD  207 (265)
Q Consensus       135 llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~--r----~~~r~~~~~~llGvl-l~~~~~l~~~gL~~ts  207 (265)
                      ++||.+.++.|...+++||....++|++++++ ++++....  +    .+.+++...+..|++ ...++.+++.|+++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   79 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS   79 (126)
T ss_pred             ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence            47999999999999999999999999999997 44443322  1    234556666677776 4677888999999999


Q ss_pred             hhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhh
Q 024642          208 AGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE  252 (265)
Q Consensus       208 a~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~  252 (265)
                      ++.++.+.++.|+++.+++++ ++|++++++++|++++++|++++.
T Consensus        80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987 799999999999999999998875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.48  E-value=1.1e-12  Score=120.32  Aligned_cols=127  Identities=17%  Similarity=0.130  Sum_probs=105.8

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc--CChhhHHHHHHHHHHHHHHHHHHH
Q 024642          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR--DDVKTRNAGIELGLWVSLGYFVEA  200 (265)
Q Consensus       123 ~~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r--~~~r~~~~~~llGvll~~~~~l~~  200 (265)
                      +.++++.++++++.|+++++++|.+.+++||..+.++|+++|+++++++...++  .++++++..+..|++....+.+++
T Consensus        10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   89 (293)
T PRK10532         10 VWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFY   89 (293)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999888765433  346677777777877666677888


Q ss_pred             HHHhhcchhHHHHHHHhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          201 LGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       201 ~gL~~tsa~~AavL~~l~Pvfv~lla~llker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                      +++++++++.++++..+.|+++.+++   +||+.+  +.++.++++|+.++...
T Consensus        90 ~al~~~~~~~a~~l~~t~Pi~~~ll~---~~~~~~--~~~~~i~~~Gv~li~~~  138 (293)
T PRK10532         90 LSIQTVPLGIAVALEFTGPLAVALFS---SRRPVD--FVWVVLAVLGLWFLLPL  138 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHh---cCChHH--HHHHHHHHHHHheeeec
Confidence            99999999999999999999998876   355544  45677889999887643

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.37  E-value=4e-12  Score=104.73  Aligned_cols=128  Identities=18%  Similarity=0.196  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc-------CChhhHHHHHHHHHHHHHHHH
Q 024642          125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR-------DDVKTRNAGIELGLWVSLGYF  197 (265)
Q Consensus       125 ~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r-------~~~r~~~~~~llGvll~~~~~  197 (265)
                      ...++.++++++||...++.|++++++||...+..|-++..++++.++...+       .+.|.|...++-|+.....+.
T Consensus         3 ~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           3 AAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence            3567888999999999999999999999999999999999998888887653       245778888888887788888


Q ss_pred             HHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhh
Q 024642          198 VEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE  252 (265)
Q Consensus       198 l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~  252 (265)
                      ++|.+++.-.++..+=+-.+.|+++.+++++ +|||++..+|+|+++..+|++++.
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            9999999999999999999999999999997 799999999999999999998765

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.33  E-value=3.2e-11  Score=110.60  Aligned_cols=123  Identities=11%  Similarity=0.081  Sum_probs=100.1

Q ss_pred             HHHHHHhhc-cCHHHHHHHHHHHHHHHHHHHHh---hhc--CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 024642          142 PILKAAEEI-MHPASFCAVRFVMSAIPFLPFVF---WAR--DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFIS  215 (265)
Q Consensus       142 i~~K~~l~~-isP~~l~~lRfllAallLl~~~~---~~r--~~~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~AavL~  215 (265)
                      +.-|.++++ ..|..++++|+.++.+++.+...   .++  .++++++..+.+|++....+.+.+.+++|+++++++++.
T Consensus        19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~   98 (302)
T TIGR00817        19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIK   98 (302)
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            356988887 77999999999999887766521   111  356788888899999877778899999999999999999


Q ss_pred             HhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCCCCCCc-cccc
Q 024642          216 LFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPPSV-SIFK  264 (265)
Q Consensus       216 ~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G~~~~l-GDll  264 (265)
                      +++|+++++++++ +|||+++++++|++++++|+.+...++.+.+. ||++
T Consensus        99 ~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~  149 (302)
T TIGR00817        99 AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLS  149 (302)
T ss_pred             hcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHH
Confidence            9999999999997 69999999999999999999876433334443 7654

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.32  E-value=8.1e-11  Score=111.25  Aligned_cols=124  Identities=9%  Similarity=0.064  Sum_probs=98.6

Q ss_pred             HHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHhh--hc-CC----hhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 024642          141 IPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFW--AR-DD----VKTRNAGIELGLWVSLGYFVEALGLLTSDAGRAS  212 (265)
Q Consensus       141 ~i~~K~~l~~is-P~~l~~lRfllAallLl~~~~~--~r-~~----~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~Aa  212 (265)
                      -...|.+++.++ |+.++.+|++++++++.++...  ++ ++    +++++..+.+|++....+...+.|+++++++.+.
T Consensus        65 ~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~  144 (350)
T PTZ00343         65 VVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTH  144 (350)
T ss_pred             HHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            556699999999 9999999999998776554322  11 11    2356677788888765566677999999999999


Q ss_pred             HHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCCCCCC-ccccc
Q 024642          213 FISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPPS-VSIFK  264 (265)
Q Consensus       213 vL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G~~~~-lGDll  264 (265)
                      ++.++.|+++++++++ +|||++++++++++++++|+.+...++.+++ .|+++
T Consensus       145 iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~  198 (350)
T PTZ00343        145 VVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWC  198 (350)
T ss_pred             HHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHH
Confidence            9999999999999997 7999999999999999999999775443443 36543

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.19  E-value=1.3e-09  Score=96.71  Aligned_cols=126  Identities=23%  Similarity=0.257  Sum_probs=105.5

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhhccCH--HHHHHHHHHHHHHHHHHHHhhhcC----ChhhHHHHHHHHHHH-HHHH
Q 024642          124 IRSIFLLNVITIVYASDIPILKAAEEIMHP--ASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWV-SLGY  196 (265)
Q Consensus       124 ~~g~lllll~~llWGss~i~~K~~l~~isP--~~l~~lRfllAallLl~~~~~~r~----~~r~~~~~~llGvll-~~~~  196 (265)
                      .+|.++.++++++|+.+.+..|...++.+|  ..+..+|+.+++++++++....++    +.+++...+..|++. ..+|
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY  206 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999887774  455557899999998888765432    234555556666654 5678


Q ss_pred             HHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhh
Q 024642          197 FVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVG  249 (265)
Q Consensus       197 ~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~  249 (265)
                      .+++.++++.++++++.+.++.|+++.+++++ ++|+++..+++|+++.+.|+.
T Consensus       207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            88999999999999999999999999999986 799999999999999999873

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.17  E-value=1.8e-09  Score=95.69  Aligned_cols=134  Identities=21%  Similarity=0.279  Sum_probs=105.2

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHhhc-cCHHHHHHHHHHHHHHHHHHHHhhhc----CChhhHHHHHHHHHH-HHHHH
Q 024642          123 KIRSIFLLNVITIVYASDIPILKAAEEI-MHPASFCAVRFVMSAIPFLPFVFWAR----DDVKTRNAGIELGLW-VSLGY  196 (265)
Q Consensus       123 ~~~g~lllll~~llWGss~i~~K~~l~~-isP~~l~~lRfllAallLl~~~~~~r----~~~r~~~~~~llGvl-l~~~~  196 (265)
                      ...+....++.++.|+.+....|...++ .++....+.|++.+.+++++...+++    ...+.++...+.+.+ ....+
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF   84 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence            3567778888889999999999998886 77777777799999988555544332    111222344444444 34556


Q ss_pred             HHHHHHHhhcchhHHHHHHHhHHHHHHHHHH-Hh-cCcCcHHHHHHHHHHHHHhhHhhcCCC
Q 024642          197 FVEALGLLTSDAGRASFISLFTVIVVPLFDG-ML-GAIIPAHTWFGVLISALGVGMLECSGS  256 (265)
Q Consensus       197 ~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~-ll-ker~s~~~~iGllLa~iGv~LL~~~G~  256 (265)
                      .+++.++++++++.++++.++.|+++.++++ ++ +||++++++++++++++|++++..++.
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~  146 (292)
T COG0697          85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG  146 (292)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence            7788999999999999999999999999997 54 999999999999999999999887654

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.14  E-value=8.8e-10  Score=87.86  Aligned_cols=97  Identities=19%  Similarity=0.246  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHhhhcC--------ChhhHHHHHHHHHHHH-HHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH
Q 024642          158 AVRFVMSAIPFLPFVFWARD--------DVKTRNAGIELGLWVS-LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM  228 (265)
Q Consensus       158 ~lRfllAallLl~~~~~~r~--------~~r~~~~~~llGvll~-~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l  228 (265)
                      .+|++.+.+++..+...+++        +++.+.+....|++.. .++.+++.|+++++ +.++.+.+++|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            68999999988887765432        1233555566677664 67888899999999 58889999999999999997


Q ss_pred             -hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642          229 -LGAIIPAHTWFGVLISALGVGMLECSG  255 (265)
Q Consensus       229 -lker~s~~~~iGllLa~iGv~LL~~~G  255 (265)
                       +|||++++++++++++++|++++..++
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence             799999999999999999999987754

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.14  E-value=1.9e-09  Score=98.23  Aligned_cols=126  Identities=17%  Similarity=0.212  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhh--c----CChhh-HHHHHHHHHHHHHHHHHH
Q 024642          127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA--R----DDVKT-RNAGIELGLWVSLGYFVE  199 (265)
Q Consensus       127 ~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~--r----~~~r~-~~~~~llGvll~~~~~l~  199 (265)
                      .++.++++++|+...+..|...+.-++  +.++++..++++++++...+  +    ..+++ +...+..|+....++.++
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL   80 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            456788899999999999976555444  35777778888888776543  1    11233 333344444455667788


Q ss_pred             HHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          200 ALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       200 ~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                      +.|++++++++++.+.++.|+++.+++++ +|||+++++++|++++++|+.++..+
T Consensus        81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            89999999999999999999999999997 79999999999999999999988754

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.07  E-value=4e-09  Score=97.38  Aligned_cols=132  Identities=18%  Similarity=0.164  Sum_probs=112.4

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc---------CChhhHHHHHHHHHHHH
Q 024642          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---------DDVKTRNAGIELGLWVS  193 (265)
Q Consensus       123 ~~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r---------~~~r~~~~~~llGvll~  193 (265)
                      ..+|+++.+.+.++||..+...|.. +++++..+...|.+-+..+++.++...|         +++|.+....+.+++..
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~   83 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL-EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG   83 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            3689999999999999999999984 8999999999999999888776654322         23344555666777777


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG  255 (265)
Q Consensus       194 ~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G  255 (265)
                      ..+..+.++...-.+-++++=..++|++..+++++ +|||+++.|+++++++.+||.......
T Consensus        84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~  146 (293)
T COG2962          84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL  146 (293)
T ss_pred             HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            77888889999999999999999999999999997 799999999999999999999877643

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.94  E-value=6.2e-08  Score=88.98  Aligned_cols=130  Identities=13%  Similarity=0.090  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc----CChhhHHHHHHHHHHH-HHHHHH
Q 024642          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR----DDVKTRNAGIELGLWV-SLGYFV  198 (265)
Q Consensus       124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r----~~~r~~~~~~llGvll-~~~~~l  198 (265)
                      ..|.++.+++++.|+...+..|...++.+|....... ++++++++++.....    .+...+...+.+|++. ..+|.+
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGS-LIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH-HHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999988788888776554 556666666665432    1223333445566664 466888


Q ss_pred             HHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       199 ~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                      ++.++++.++++++++.++.|++..+++++ ++|+++..+++|.++.++|+++....
T Consensus       226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999987 79999999999999999999887543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.90  E-value=6.8e-08  Score=88.80  Aligned_cols=128  Identities=13%  Similarity=0.129  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc-----CChhhHHHHHHHHHHHHHHHHH
Q 024642          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR-----DDVKTRNAGIELGLWVSLGYFV  198 (265)
Q Consensus       124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r-----~~~r~~~~~~llGvll~~~~~l  198 (265)
                      ..|.++.++++++|+.+.+..|...++.+|.....   ..+++++.+......     .+...+...+..|+....+|.+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l  231 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAA  231 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            45889999999999999999999877778776532   334444443222222     1234455555566555667899


Q ss_pred             HHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       199 ~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                      ++.++++.++++++.+.++.|++..+++++ ++|+++..+++|.++.++|+++....
T Consensus       232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            999999999999999999999999999986 79999999999999999999876543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.86  E-value=1.3e-07  Score=86.67  Aligned_cols=130  Identities=10%  Similarity=0.011  Sum_probs=106.0

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc------CChhhHHHHHHHHHHH-HHHH
Q 024642          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR------DDVKTRNAGIELGLWV-SLGY  196 (265)
Q Consensus       124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r------~~~r~~~~~~llGvll-~~~~  196 (265)
                      ..|.++.+++++.|+...+..|.... -++.....+.+.++++++.++.....      .+.+.+...+..|++. ..+|
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~  227 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLPL-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI  227 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999988543 34566778888899888877765432      1234555656666653 4678


Q ss_pred             HHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          197 FVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       197 ~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                      .+++.++++.++++++++..+.|++.++++++ ++|+++..+++|.++.+.|++++...
T Consensus       228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999987 79999999999999999999887654

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.84  E-value=5.6e-08  Score=89.66  Aligned_cols=126  Identities=13%  Similarity=0.074  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcC---C-hhhHHHHHHHHHHHHHHHHHHHH
Q 024642          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD---D-VKTRNAGIELGLWVSLGYFVEAL  201 (265)
Q Consensus       126 g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~---~-~r~~~~~~llGvll~~~~~l~~~  201 (265)
                      ++++.++++++||+.++..|... +.++.++.  |..++++++..+....+.   + ++.+...++.|++...++.+++.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~   78 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFK   78 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHH
Confidence            46788899999999999999866 78887775  788888877765443322   1 33345566777777777888999


Q ss_pred             HHhhcchhHHHHHHH-hHHHHHHHHHHH-hcCcCcHHH----HHHHHHHHHHhhHhhcC
Q 024642          202 GLLTSDAGRASFISL-FTVIVVPLFDGM-LGAIIPAHT----WFGVLISALGVGMLECS  254 (265)
Q Consensus       202 gL~~tsa~~AavL~~-l~Pvfv~lla~l-lker~s~~~----~iGllLa~iGv~LL~~~  254 (265)
                      ++++++.+.+-.+.+ +.++++.+++.+ +||+.++++    ++|++++++|+.++...
T Consensus        79 ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        79 SMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             HHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            999999999987776 888888889986 799999999    99999999999887653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.80  E-value=2.1e-07  Score=88.81  Aligned_cols=130  Identities=8%  Similarity=0.067  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhhccCH-HHHHHHHHHHHHHHHHHHHhhh-cCChhh--------HHHHHHHHHHHH
Q 024642          124 IRSIFLLNVITIVYASDIPILKAAEEIMHP-ASFCAVRFVMSAIPFLPFVFWA-RDDVKT--------RNAGIELGLWVS  193 (265)
Q Consensus       124 ~~g~lllll~~llWGss~i~~K~~l~~isP-~~l~~lRfllAallLl~~~~~~-r~~~r~--------~~~~~llGvll~  193 (265)
                      ..|.++++++++.|+.+.+..|......+| ...+++-.+++++.+.++.... +.+...        ....+..|+...
T Consensus       188 ~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~  267 (358)
T PLN00411        188 LIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITS  267 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHH
Confidence            458889999999999999999987776655 4666677777766665444332 211111        112223344444


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (265)
Q Consensus       194 ~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~  253 (265)
                      .+|.+++.++++.+++.++++.++.|++..+++++ ++|+++..+++|.++.++|+++...
T Consensus       268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            57888999999999999999999999999999997 7999999999999999999998765

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.66  E-value=4.7e-09  Score=96.32  Aligned_cols=127  Identities=17%  Similarity=0.206  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc------CChhhHHHHHHHHHHHHHHHH
Q 024642          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR------DDVKTRNAGIELGLWVSLGYF  197 (265)
Q Consensus       124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r------~~~r~~~~~~llGvll~~~~~  197 (265)
                      .+|.+++.+. .++-++.++.+.+ .+.+|......|++.--++-.+.....+      +..|.|  +++-|++.+.+..
T Consensus        37 ~~gl~l~~vs-~ff~~~~vv~t~~-~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~--LiLRg~mG~tgvm  112 (346)
T KOG4510|consen   37 NLGLLLLTVS-YFFNSCMVVSTKV-LENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKW--LILRGFMGFTGVM  112 (346)
T ss_pred             ccCceehhhH-HHHhhHHHhhhhh-hccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEE--EEeehhhhhhHHH
Confidence            4566676666 4455554444432 4789999999996665555555544332      112222  2233444444455


Q ss_pred             HHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          198 VEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       198 l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                      +.+++++|.+-+.|++|..+.|+++.+++|+ +||+.++...++.++.+.||++++-+
T Consensus       113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP  170 (346)
T KOG4510|consen  113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP  170 (346)
T ss_pred             HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence            6679999999999999999999999999997 79999999999999999999998754

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.62  E-value=2.4e-06  Score=78.64  Aligned_cols=130  Identities=15%  Similarity=0.112  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhhccCH---HHHHHHHHHHHHHHHHHHHhh-hc----------CChhhHHHHHHHH
Q 024642          124 IRSIFLLNVITIVYASDIPILKAAEEIMHP---ASFCAVRFVMSAIPFLPFVFW-AR----------DDVKTRNAGIELG  189 (265)
Q Consensus       124 ~~g~lllll~~llWGss~i~~K~~l~~isP---~~l~~lRfllAallLl~~~~~-~r----------~~~r~~~~~~llG  189 (265)
                      ..|.++.+++++.|+...+..|...+..++   ..+..+=.+++.+.+...... .+          .+...+...+.+|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            468899999999999999999986543332   333344444444433332211 11          1234455566667


Q ss_pred             HHH-HHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642          190 LWV-SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (265)
Q Consensus       190 vll-~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~  253 (265)
                      ++. ..+|.+++.++++.++++++.+..+.|++..+++++ ++|+++..+++|.++.++|+.+...
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~  287 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVF  287 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhc
Confidence            654 467888999999999999999999999999999987 7999999999999999999987654

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.59  E-value=2.8e-07  Score=83.98  Aligned_cols=128  Identities=14%  Similarity=0.084  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhhccCHH----HHHHHHHHHHHHHHHHHHhhhc-C----ChhhHHHHHHH-HHHHH
Q 024642          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPA----SFCAVRFVMSAIPFLPFVFWAR-D----DVKTRNAGIEL-GLWVS  193 (265)
Q Consensus       124 ~~g~lllll~~llWGss~i~~K~~l~~isP~----~l~~lRfllAallLl~~~~~~r-~----~~r~~~~~~ll-Gvll~  193 (265)
                      .++..+.++++++|+.+.+..|...++.+|.    ....+.+++.++.+.++...++ .    ....+...+.. ++...
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  222 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIG  222 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence            3566778889999999999998765444442    2333444443333333222111 1    11122222333 34445


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHh
Q 024642          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML  251 (265)
Q Consensus       194 ~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL  251 (265)
                      .+|.+++.++++.+++.++.+.++.|++..+++++ ++|+++..+++|.++.++|+.++
T Consensus       223 l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       223 GAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence            67889999999999999999999999999999986 79999999999999999999864

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.56  E-value=1.4e-06  Score=80.03  Aligned_cols=130  Identities=16%  Similarity=0.078  Sum_probs=101.0

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhh--ccCHHHHHHHHHHHHHHHHHHHHhhhc-CC--hhhH-----------HH--H
Q 024642          124 IRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWAR-DD--VKTR-----------NA--G  185 (265)
Q Consensus       124 ~~g~lllll~~llWGss~i~~K~~l~--~isP~~l~~lRfllAallLl~~~~~~r-~~--~r~~-----------~~--~  185 (265)
                      ..|.++.+++++.|+...+..|...+  +.+|..+..+-..+++++++|+..... ..  ..++           ..  .
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            46889999999999999999999887  899999999999999999888866432 11  1100           11  1


Q ss_pred             HHHHHHH-HHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642          186 IELGLWV-SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (265)
Q Consensus       186 ~llGvll-~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~  253 (265)
                      +..+... ...+.+.+.+++.+++..++++..+.|+++.+++++ ++|+++..+++|.++.++|+.+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            1222211 112235567999999999999999999999999986 7999999999999999999987654

specificities overlap.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.54  E-value=7.9e-06  Score=72.35  Aligned_cols=130  Identities=16%  Similarity=0.271  Sum_probs=100.7

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHH-HHHHHHHHHHHHHHhhhc---CChhhHHHHHHHHHHHH-HHHHH
Q 024642          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCA-VRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVS-LGYFV  198 (265)
Q Consensus       124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~-lRfllAallLl~~~~~~r---~~~r~~~~~~llGvll~-~~~~l  198 (265)
                      ..|.++.+++++.|+.+.+..|... ..++..... +-+..+.++..+......   ...+.+......|++.. .++.+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  231 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999998876 777777776 444433333333333221   23455666667777654 57889


Q ss_pred             HHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       199 ~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                      ++.+++..+++.++.+..+.|++.++++++ ++|+++..+++|..+.+.|+.+...+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999998886 79999999999999999999887543

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.50  E-value=3.4e-06  Score=80.02  Aligned_cols=119  Identities=13%  Similarity=0.141  Sum_probs=85.0

Q ss_pred             HHHhhhHHHHHHHhh-ccC-HHHHHHHHHHHHHHHHHHHHhhhc-C------ChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 024642          135 IVYASDIPILKAAEE-IMH-PASFCAVRFVMSAIPFLPFVFWAR-D------DVKTRNAGIELGLWVSLGYFVEALGLLT  205 (265)
Q Consensus       135 llWGss~i~~K~~l~-~is-P~~l~~lRfllAallLl~~~~~~r-~------~~r~~~~~~llGvll~~~~~l~~~gL~~  205 (265)
                      ++=..+...+....+ +.+ |..-.++=+++-.++..++...|+ .      -+++|+..++++++-..+.++...|++|
T Consensus        23 l~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~y  102 (334)
T PF06027_consen   23 LCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQY  102 (334)
T ss_pred             HHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            333344444444333 232 444444444443444445444442 1      1355777778888877778888999999


Q ss_pred             cchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642          206 SDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (265)
Q Consensus       206 tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~  253 (265)
                      |+.+.+.++.+..-+++++++++ +|+|.++.+++|++++++|+.++..
T Consensus       103 TsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~  151 (334)
T PF06027_consen  103 TSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVV  151 (334)
T ss_pred             ccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheee
Confidence            99999999999999999999997 7999999999999999999988765

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.49  E-value=5e-06  Score=76.47  Aligned_cols=127  Identities=8%  Similarity=-0.035  Sum_probs=87.8

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhc--cCHHHHHHHHHHHHHHHHHHHHhhhc-----CChhhHHHHHHHHHHHHHHHHHHHH
Q 024642          129 LLNVITIVYASDIPILKAAEEI--MHPASFCAVRFVMSAIPFLPFVFWAR-----DDVKTRNAGIELGLWVSLGYFVEAL  201 (265)
Q Consensus       129 llll~~llWGss~i~~K~~l~~--isP~~l~~lRfllAallLl~~~~~~r-----~~~r~~~~~~llGvll~~~~~l~~~  201 (265)
                      ..++++++|+.+.+..|....+  .+......+=..++.+.++++.....     .+...+......|+....+|.+++.
T Consensus       153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~  232 (296)
T PRK15430        153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTA  232 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788999999998886432  22233333333333333222211100     0111123333455555567889999


Q ss_pred             HHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642          202 GLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG  255 (265)
Q Consensus       202 gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G  255 (265)
                      ++++.+++.++.+.++.|++..+++++ ++|+++..+++|.++.++|+.++..+|
T Consensus       233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999987 799999999999999999998877654

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.35  E-value=7.5e-06  Score=75.58  Aligned_cols=128  Identities=20%  Similarity=0.170  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHH---HHHHHHHHHHHhhhcC-ChhhHHHHHHHHHHHHHHHHHH
Q 024642          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRF---VMSAIPFLPFVFWARD-DVKTRNAGIELGLWVSLGYFVE  199 (265)
Q Consensus       124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRf---llAallLl~~~~~~r~-~~r~~~~~~llGvll~~~~~l~  199 (265)
                      .+|.+..+++++.++...+..|..  +.+|....+..+   +++++++.+...+.++ ..+.....++.|++-..+|.++
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~ia~~~y  228 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLMWGIGNFFY  228 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999975  588888844444   4444444333211111 1223444556888767778888


Q ss_pred             HHHHh-hcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHH----HHHHHHHHHhhHhhc
Q 024642          200 ALGLL-TSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTW----FGVLISALGVGMLEC  253 (265)
Q Consensus       200 ~~gL~-~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~----iGllLa~iGv~LL~~  253 (265)
                      +.+++ +..++.++++....|+...+++.+ ++|+.+++++    +|.++.+.|+.++..
T Consensus       229 ~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       229 LFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            89999 999999999999999999999986 8999999999    999999999988643

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.32  E-value=3.2e-05  Score=73.23  Aligned_cols=129  Identities=9%  Similarity=0.110  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhhc-------cCHHHHHHHHHHHHHHHHHHHHhhhc-CC----h-------hh--H
Q 024642          124 IRSIFLLNVITIVYASDIPILKAAEEI-------MHPASFCAVRFVMSAIPFLPFVFWAR-DD----V-------KT--R  182 (265)
Q Consensus       124 ~~g~lllll~~llWGss~i~~K~~l~~-------isP~~l~~lRfllAallLl~~~~~~r-~~----~-------r~--~  182 (265)
                      ..|.++.+++.+.|+...+..|..+++       .++..+..+-.++++++++|+..... ..    +       ..  +
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            568999999999999999999998764       56776666667888888888765221 10    0       01  1


Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhh
Q 024642          183 NAGIELGLWVSLGYFVE----ALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE  252 (265)
Q Consensus       183 ~~~~llGvll~~~~~l~----~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~  252 (265)
                      ...+...+...+.|.++    +.+++.+++.++++...+-|+++.+++++ ++|+++..+++|.+++++|+.+..
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            11111111122233333    46999999999999999999999999996 899999999999999999998753

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.31  E-value=5.5e-05  Score=62.01  Aligned_cols=125  Identities=18%  Similarity=0.160  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhh-------ccCHHHHHHHHHHHHHHHHHHHHhhhc-CC---------------h-hh
Q 024642          126 SIFLLNVITIVYASDIPILKAAEE-------IMHPASFCAVRFVMSAIPFLPFVFWAR-DD---------------V-KT  181 (265)
Q Consensus       126 g~lllll~~llWGss~i~~K~~l~-------~isP~~l~~lRfllAallLl~~~~~~r-~~---------------~-r~  181 (265)
                      |.++.+++.++-+...+..|..++       ..+++.+..+-...+.++++++....+ ..               . +.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            456788888999999999988764       479999999999999999998766432 10               0 11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhH
Q 024642          182 RNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM  250 (265)
Q Consensus       182 ~~~~~llGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~L  250 (265)
                      +...+..|++........+.-++++++-..+++..+-.+++.+++++ ++|+++..+++|++++++|+++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            23334455555555566778899999999999999999999999987 7999999999999999999865

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.22  E-value=4.9e-05  Score=61.07  Aligned_cols=61  Identities=20%  Similarity=0.194  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhh
Q 024642          192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE  252 (265)
Q Consensus       192 l~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~  252 (265)
                      ....+.++..+++..+.+.+-.+.++.++++.+++++ +|||++.++++|+.+.++|++++.
T Consensus        47 ~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         47 LGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3456778889999999999998888999999999987 899999999999999999998864

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.13  E-value=9.8e-05  Score=61.04  Aligned_cols=119  Identities=17%  Similarity=0.048  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHH-HHHHHHHHHHH
Q 024642          125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEALGL  203 (265)
Q Consensus       125 ~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll-~~~~~l~~~gL  203 (265)
                      +++++.++..++=...-++.|.++++.+....... . +..+..    .  ..+    ...+..|+.. ..+|.++..++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~-~~~~~~----~--~~p----~~~i~lgl~~~~la~~~w~~aL   69 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-F-IAALLA----F--GLA----LRAVLLGLAGYALSMLCWLKAL   69 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-H-HHHHHH----H--hcc----HHHHHHHHHHHHHHHHHHHHHH
Confidence            35677777777778888999999887655433221 1 111110    0  011    1123445543 45688899999


Q ss_pred             hhcchhHHHHHHHhHHHHHHHHHH---HhcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642          204 LTSDAGRASFISLFTVIVVPLFDG---MLGAIIPAHTWFGVLISALGVGMLECSG  255 (265)
Q Consensus       204 ~~tsa~~AavL~~l~Pvfv~lla~---llker~s~~~~iGllLa~iGv~LL~~~G  255 (265)
                      +..+.+.+.-+.+..++++.+.++   +++|+++..+++|+++.++|++++..++
T Consensus        70 ~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         70 RYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            999999999888888888888887   4799999999999999999999987544

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.07  E-value=0.00011  Score=67.26  Aligned_cols=126  Identities=20%  Similarity=0.185  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhh--hcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024642          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW--ARDDVKTRNAGIELGLWVSLGYFVEALGL  203 (265)
Q Consensus       126 g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~--~r~~~r~~~~~~llGvll~~~~~l~~~gL  203 (265)
                      .++.++..++.-=....+.|...+.++|.-.+.+|..+++++++++.+-  +|..++++...+..|+.+...+.+||.++
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si   92 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSI   92 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666555666778888999999999999999999999988862  24567888888899999887788999999


Q ss_pred             hhcchhHHHHHHHhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhHhhcCCC
Q 024642          204 LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGS  256 (265)
Q Consensus       204 ~~tsa~~AavL~~l~Pvfv~lla~llker~s~~~~iGllLa~iGv~LL~~~G~  256 (265)
                      +..+-+.+.-|-.+-|+.+.++.   .+|.  +..+-+.+++.|+.++.-.|.
T Consensus        93 ~riPlGiAVAiEF~GPL~vA~~~---sRr~--~d~vwvaLAvlGi~lL~p~~~  140 (292)
T COG5006          93 ERIPLGIAVAIEFTGPLAVALLS---SRRL--RDFVWVALAVLGIWLLLPLGQ  140 (292)
T ss_pred             HhccchhhhhhhhccHHHHHHHh---ccch--hhHHHHHHHHHHHHhheeccC
Confidence            99999999999999998887765   3443  344555667788888766553

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.89  E-value=0.00037  Score=63.94  Aligned_cols=127  Identities=15%  Similarity=0.117  Sum_probs=105.4

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc-C---ChhhHHHHHHHHHHH-HHHHH
Q 024642          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR-D---DVKTRNAGIELGLWV-SLGYF  197 (265)
Q Consensus       123 ~~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r-~---~~r~~~~~~llGvll-~~~~~  197 (265)
                      +..|..+.+.+..+|..+-+..|.+-+..+.-.-+.+-+++|+++.+|+-.... .   ++.-+...+.+|++. .+-|.
T Consensus       146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYs  225 (292)
T COG5006         146 DPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYS  225 (292)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchH
Confidence            367999999999999999999988766677777788889999999999887542 2   233344555666664 45688


Q ss_pred             HHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhh
Q 024642          198 VEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVG  249 (265)
Q Consensus       198 l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~  249 (265)
                      +...+++..+...-+++.++.|.+..+.+++ ++|.++..||++++..+.+..
T Consensus       226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999997 799999999999998777664

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.67  E-value=0.0018  Score=59.76  Aligned_cols=103  Identities=16%  Similarity=0.151  Sum_probs=84.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhc---CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH
Q 024642          152 HPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM  228 (265)
Q Consensus       152 sP~~l~~lRfllAallLl~~~~~~r---~~~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l  228 (265)
                      .|..+++.-+....+.-.+.....+   .++..++..+..+++......+.+.+++|.+...-.++-+..|+.+++++.+
T Consensus        31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l  110 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVL  110 (303)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHH
Confidence            3889999999888877766655433   2333456667778877777778889999999999999999999999999986


Q ss_pred             -hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          229 -LGAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       229 -lker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                       +|||.++++++++++..+|+++....
T Consensus       111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~  137 (303)
T PF08449_consen  111 ILGKRYSRRQYLSVLLITIGVAIFTLS  137 (303)
T ss_pred             hcCccccHHHHHHHHHHHhhHheeeec
Confidence             79999999999999999999887654

; GO: 0055085 transmembrane transport

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.62  E-value=0.0016  Score=61.90  Aligned_cols=132  Identities=14%  Similarity=0.013  Sum_probs=97.4

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhh-cC-----Ch--hhHHHHHHHHHHHHH
Q 024642          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA-RD-----DV--KTRNAGIELGLWVSL  194 (265)
Q Consensus       123 ~~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~-r~-----~~--r~~~~~~llGvll~~  194 (265)
                      ..+|.++++++++++|.+.+..+..+.+.++..+.+.=-+.+.++..+..... +.     ++  +.+...+..++.++.
T Consensus       166 ~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~  245 (334)
T PF06027_consen  166 PILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFL  245 (334)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHH
Confidence            47899999999999999999999999998988887776667776666554322 21     12  222222333344455


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          195 GYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       195 ~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                      .|.+....+++++|....+=.-+..++..++..+ +++++++..++|.++.++|+++....
T Consensus       246 ~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~  306 (334)
T PF06027_consen  246 FYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLA  306 (334)
T ss_pred             HHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEcc
Confidence            6677778899888876655455567788888876 78999999999999999999887654

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.56  E-value=0.0032  Score=50.80  Aligned_cols=71  Identities=15%  Similarity=0.172  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHh
Q 024642          181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML  251 (265)
Q Consensus       181 ~~~~~~llGvll~~~~~l~~~gL~~tsa~~A-avL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL  251 (265)
                      .+...+..-+.....|+++..+++..+.+.+ ++-.++.-+.+.+++.+ ++|+++..+++|+.+.++|++.+
T Consensus        34 ~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         34 RKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            3444444445556678888899999999999 77788888899999986 89999999999999999999876

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.26  E-value=0.0059  Score=50.05  Aligned_cols=68  Identities=13%  Similarity=0.258  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHH-HHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642          188 LGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG  255 (265)
Q Consensus       188 lGvll~~~~~l~~~gL~~tsa~~A-avL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G  255 (265)
                      .-++....|+++..++++.+.+.| ++..++.-+.+.+++.+ ++|+++..+++|+.+.++|++++-..+
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            334445667888899999999998 66678888899999986 899999999999999999998886544

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.25  E-value=0.0059  Score=48.87  Aligned_cols=72  Identities=11%  Similarity=0.047  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642          182 RNAGIELGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (265)
Q Consensus       182 ~~~~~llGvll~~~~~l~~~gL~~tsa~~A-avL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~  253 (265)
                      +...+..-++....|+++..+++..+.+.+ ++-.++--+.+.+++.+ +||+++..+++|+.+.++|++.+-.
T Consensus        29 ~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         29 LTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            333333334445667888899999999998 77788888999999986 8999999999999999999988744

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.24  E-value=0.019  Score=53.09  Aligned_cols=128  Identities=14%  Similarity=0.121  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhh--ccCHHHHHHHHHHHHHHHHHHHHhh--hcC----------ChhhHHHHHHHHHH
Q 024642          126 SIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFW--ARD----------DVKTRNAGIELGLW  191 (265)
Q Consensus       126 g~lllll~~llWGss~i~~K~~l~--~isP~~l~~lRfllAallLl~~~~~--~r~----------~~r~~~~~~llGvl  191 (265)
                      |++++++..++=|...+..+...+  +.++....++-.+.+.+++++....  .+.          .+..+...++..+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            899999999999999999988875  7889999999999988887776655  321          11123343444444


Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642          192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (265)
Q Consensus       192 l~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~  253 (265)
                      ...+..+.+.-.+..++-..+++..+--+++.+++.+ ++++++..+|+|+++.+.|+.+=..
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY  297 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence            4444444456678889999999999999999999986 7999999999999999999987443

; GO: 0055085 transmembrane transport

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.23  E-value=0.002  Score=58.48  Aligned_cols=78  Identities=15%  Similarity=0.215  Sum_probs=67.3

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642          178 DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG  255 (265)
Q Consensus       178 ~~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G  255 (265)
                      ++|+.....+-+++......+.+.++++.+++.--++..+-.+++++++++ +|+|+++++|+++++.++|+.++-.++
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~   91 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS   91 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence            456666666667777777788899999999999999999999999999986 799999999999999999999876543

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.21  E-value=0.0046  Score=49.69  Aligned_cols=70  Identities=19%  Similarity=0.210  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642          184 AGIELGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (265)
Q Consensus       184 ~~~llGvll~~~~~l~~~gL~~tsa~~A-avL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~  253 (265)
                      +.++.-++....|.++..++++.+.+.| ++-.+.--+.+.+.+++ ++|+++..+++|+.+.++|++.+-.
T Consensus        32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            3333333445567888899999999999 78889999999999987 7999999999999999999988654

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.20  E-value=0.0069  Score=48.81  Aligned_cols=64  Identities=16%  Similarity=0.220  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHhhcchhHH-HHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          191 WVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       191 ll~~~~~l~~~gL~~tsa~~A-avL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                      +....|.++..+++..+.+.| ++-.++.-+.+.+++++ ++|+++..+++|+.+.++|++++-..
T Consensus        39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            345567778899999999998 66677888888999986 89999999999999999999988654

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.18  E-value=0.0018  Score=52.66  Aligned_cols=108  Identities=17%  Similarity=0.233  Sum_probs=73.0

Q ss_pred             HHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHH-HHHHHHHHHHHhhcchh
Q 024642          131 NVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEALGLLTSDAG  209 (265)
Q Consensus       131 ll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll-~~~~~l~~~gL~~tsa~  209 (265)
                      ++++++||.+.+++|.+....++..-.. ++.-....++       .+   +...  +++.+ ..+...+++.+..++-+
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~Ll-------~n---~~y~--ipf~lNq~GSv~f~~~L~~~dlS   68 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKFLL-------LN---PKYI--IPFLLNQSGSVLFFLLLGSADLS   68 (113)
T ss_pred             eeehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHHHH-------Hh---HHHH--HHHHHHHHHHHHHHHHHhcCCce
Confidence            4568899999999999887655444331 3222222111       11   2222  23332 23455667888889988


Q ss_pred             HHHHHH-HhHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHhhHh
Q 024642          210 RASFIS-LFTVIVVPLFDGMLGAII-PAHTWFGVLISALGVGML  251 (265)
Q Consensus       210 ~AavL~-~l~Pvfv~lla~llker~-s~~~~iGllLa~iGv~LL  251 (265)
                      .+.-+. ++.-+++.+.+++++|+. +++.++|+++.+.|+.+.
T Consensus        69 lavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   69 LAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             eeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            888664 888999999999887654 688999999999999764

Many members are annotated as potential transmembrane proteins.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.00  E-value=0.027  Score=52.20  Aligned_cols=123  Identities=20%  Similarity=0.099  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHH---HHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHHHH
Q 024642          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAV---RFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEA  200 (265)
Q Consensus       124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~l---RfllAallLl~~~~~~r~~~r~~~~~~llGvll~~~~~l~~  200 (265)
                      .++++.+++..+.+..+.++.|.  .+++|....+-   =++++++++..+. .+....|.....++.|++-..+..+++
T Consensus       137 ~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~~k~~~~nil~G~~w~ignl~~~  213 (269)
T PF06800_consen  137 KKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLPQAIGMLIGAFIFNLFS-KKPFFEKKSWKNILTGLIWGIGNLFYL  213 (269)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHHHHHhhcc-cccccccchHHhhHHHHHHHHHHHHHH
Confidence            67899999999999999888888  46676555442   2333333333222 112222334455667887777777778


Q ss_pred             HHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHH----HHHHHHHHHhh
Q 024642          201 LGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTW----FGVLISALGVG  249 (265)
Q Consensus       201 ~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~----iGllLa~iGv~  249 (265)
                      ++.+....+.+=.+..+.+++..+.+.+ +||+-+++++    +|+++.++|.+
T Consensus       214 is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  214 ISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             HhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence            8888888888888889999888888876 7998776655    44444445543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.84  E-value=0.0015  Score=62.90  Aligned_cols=80  Identities=11%  Similarity=0.130  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHHh-cCcCcHHHHHHHHHHHHHhhHhhcCCC--------
Q 024642          186 IELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECSGS--------  256 (265)
Q Consensus       186 ~llGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~ll-ker~s~~~~iGllLa~iGv~LL~~~G~--------  256 (265)
                      +.+..+=+.+.++...++.+|+++..+++.++.-+|+..++.++ .||++..+++++++.+.|++++..++.        
T Consensus       163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a  242 (416)
T KOG2765|consen  163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPA  242 (416)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCc
Confidence            33333334556777899999999999999999999999999986 899999999999999999999877532        


Q ss_pred             -CCCcccccC
Q 024642          257 -PPSVSIFKS  265 (265)
Q Consensus       257 -~~~lGDlla  265 (265)
                       ..-+||++|
T Consensus       243 ~~~llG~lla  252 (416)
T KOG2765|consen  243 SRPLLGNLLA  252 (416)
T ss_pred             cchhHHHHHH
Confidence             234677664

>TIGR00688 rarD rarD protein

Probab=96.73  E-value=0.045  Score=48.86  Aligned_cols=98  Identities=10%  Similarity=0.059  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc------CC-hhhHHHHHHHHHHHHHHHHHHHH
Q 024642          129 LLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR------DD-VKTRNAGIELGLWVSLGYFVEAL  201 (265)
Q Consensus       129 llll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r------~~-~r~~~~~~llGvll~~~~~l~~~  201 (265)
                      ..+++++.|+...+..|...+. ++......-+... .+..+......      .+ .++|...+..|+....+|.+++.
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~~  227 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKNT-DLAGFCLETLSLM-PVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAFVI  227 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCC-CcchHHHHHHHHH-HHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788999999888886432 2222222111111 11111111111      11 23677777778776678999999


Q ss_pred             HHhhcchhHHHHHHHhHHHHHHHHHHH
Q 024642          202 GLLTSDAGRASFISLFTVIVVPLFDGM  228 (265)
Q Consensus       202 gL~~tsa~~AavL~~l~Pvfv~lla~l  228 (265)
                      |+++.+++.++.+.++.|++..+++.+
T Consensus       228 a~~~~~a~~~s~~~yl~Pv~~~~~~~~  254 (256)
T TIGR00688       228 AANRLPLNLLGLLQYIGPTIMMLCVSF  254 (256)
T ss_pred             HHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999865

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.58  E-value=0.11  Score=49.74  Aligned_cols=128  Identities=13%  Similarity=0.185  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhh-c---cCHHHHHHHHHHHHHHHHHHHHhhh-----cC-----------ChhhHHH
Q 024642          125 RSIFLLNVITIVYASDIPILKAAEE-I---MHPASFCAVRFVMSAIPFLPFVFWA-----RD-----------DVKTRNA  184 (265)
Q Consensus       125 ~g~lllll~~llWGss~i~~K~~l~-~---isP~~l~~lRfllAallLl~~~~~~-----r~-----------~~r~~~~  184 (265)
                      .-.+.+++..+.++...+..|..-. +   ..|....+.--++-.++.+.++++.     ++           .+++...
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            3445666677789999999998643 3   5666666666666655555544433     11           1123333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhh
Q 024642          185 GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE  252 (265)
Q Consensus       185 ~~llGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~  252 (265)
                      ..+=.++..+.+.+++.++.+.+++.-.+...+--+.++++..+ ++||++++||.++++.++|+.++-
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            33344455555558899999999999999999999999999986 899999999999999999999886

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.16  E-value=0.33  Score=45.45  Aligned_cols=123  Identities=8%  Similarity=0.059  Sum_probs=90.7

Q ss_pred             HHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhh---c-----CChhhHHHHHHHHHHHHHHHHHHHHH
Q 024642          131 NVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA---R-----DDVKTRNAGIELGLWVSLGYFVEALG  202 (265)
Q Consensus       131 ll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~---r-----~~~r~~~~~~llGvll~~~~~l~~~g  202 (265)
                      +..++.||..+.+=|..  .+|+..-..+-.+.-...-+.++...   .     .+...+...+..|....+...++..|
T Consensus       154 l~la~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~a  231 (293)
T COG2962         154 LALALSFGLYGLLRKKL--KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAA  231 (293)
T ss_pred             HHHHHHHHHHHHHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence            34455677777776663  56665555555544444333333322   1     13345667778888888888888899


Q ss_pred             HhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642          203 LLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG  255 (265)
Q Consensus       203 L~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G  255 (265)
                      -+..+-+.-+++++..|.+..+++.+ ++|.++..++++-+..-.|+++...++
T Consensus       232 a~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~  285 (293)
T COG2962         232 AKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG  285 (293)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999986 689999999999999999998877654

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.07  E-value=0.035  Score=52.01  Aligned_cols=118  Identities=15%  Similarity=0.173  Sum_probs=82.4

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHH-HHHHHHHHH
Q 024642          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEAL  201 (265)
Q Consensus       123 ~~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll-~~~~~l~~~  201 (265)
                      ...|.++.+++.++-|.+..+.|......+.   ...|---.          .+...++..  ...|+.. ..+..+.+.
T Consensus         5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~---~~~~~~~~----------~~~~l~~~~--W~~G~~~~~~g~~~~~~   69 (300)
T PF05653_consen    5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR---GSLRAGSG----------GRSYLRRPL--WWIGLLLMVLGEILNFV   69 (300)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccccccch----------hhHHHhhHH--HHHHHHHHhcchHHHHH
Confidence            4679999999999999999999986443222   11110000          000011111  1233332 344566678


Q ss_pred             HHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642          202 GLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG  255 (265)
Q Consensus       202 gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G  255 (265)
                      ++.+.+++..+-+.++.-++..+++.+ +|||++++.++|.+++++|..++...+
T Consensus        70 Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~  124 (300)
T PF05653_consen   70 ALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA  124 (300)
T ss_pred             HHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence            999999999999999999999999986 799999999999999999998876543

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.00  E-value=0.5  Score=39.34  Aligned_cols=122  Identities=12%  Similarity=0.063  Sum_probs=74.9

Q ss_pred             HHHHHHHHHhhhHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHhhhcC-Ch---hhH-HHHHHHHHHHHHHHHHHHHH
Q 024642          129 LLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFWARD-DV---KTR-NAGIELGLWVSLGYFVEALG  202 (265)
Q Consensus       129 llll~~llWGss~i~~K~~l~~is-P~~l~~lRfllAallLl~~~~~~r~-~~---r~~-~~~~llGvll~~~~~l~~~g  202 (265)
                      +.+++.++-+....+--..-+..+ |+..+++=+..+.+++..+....+. +.   ++. ++..+-|++....-.+....
T Consensus         5 la~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~~~   84 (138)
T PF04657_consen    5 LALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNIIL   84 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHHHH
Confidence            334444444444444333334554 9999999999999988887765432 22   111 12222333322222344566


Q ss_pred             HhhcchhHHHHH-HHhHHHHHHHHHHH--h---cCcCcHHHHHHHHHHHHHhhH
Q 024642          203 LLTSDAGRASFI-SLFTVIVVPLFDGM--L---GAIIPAHTWFGVLISALGVGM  250 (265)
Q Consensus       203 L~~tsa~~AavL-~~l~Pvfv~lla~l--l---ker~s~~~~iGllLa~iGv~L  250 (265)
                      +....++.+..+ ..-+-+...++..+  +   +++++..+++|+++.++|+.+
T Consensus        85 vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   85 VPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            777777777644 35556666666664  3   678899999999999999864

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.95  E-value=0.34  Score=46.51  Aligned_cols=131  Identities=18%  Similarity=0.124  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHHHHHHhhhH-------HHHHHHh-hccCHHHHHHHHHH---HHHHHHHH-HHh---hhcCC------h--
Q 024642          123 KIRSIFLLNVITIVYASDI-------PILKAAE-EIMHPASFCAVRFV---MSAIPFLP-FVF---WARDD------V--  179 (265)
Q Consensus       123 ~~~g~lllll~~llWGss~-------i~~K~~l-~~isP~~l~~lRfl---lAallLl~-~~~---~~r~~------~--  179 (265)
                      ..||++.++++.+..+...       +.-+... .+.+|.....--+.   +++++.-+ +..   +++++      +  
T Consensus       172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~  251 (345)
T PRK13499        172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL  251 (345)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence            3689999999998877777       4444422 25666655555544   55554432 222   12111      1  


Q ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH---HH-HhHHHHHHHHHHHhcCcCc------HHHHHHHHH
Q 024642          180 ------KTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF---IS-LFTVIVVPLFDGMLGAIIP------AHTWFGVLI  243 (265)
Q Consensus       180 ------r~~~~~~llGvll~~~~~l~~~gL~~tsa~~Aav---L~-~l~Pvfv~lla~llker~s------~~~~iGllL  243 (265)
                            ++....++.|++-+.++.++..|-.....+.+.+   +. .+..++..+.+.++||+-+      +..++|+++
T Consensus       252 ~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~lkE~K~a~~k~~~~l~~G~vl  331 (345)
T PRK13499        252 AKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLVLKEWKGASRRPVRVLSLGCVV  331 (345)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhhhhhccCCCccchhHHHHHHHH
Confidence                  1222335556655555555556666554443333   33 6777777777777877544      567888888


Q ss_pred             HHHHhhHhhc
Q 024642          244 SALGVGMLEC  253 (265)
Q Consensus       244 a~iGv~LL~~  253 (265)
                      .++|+.++..
T Consensus       332 iI~g~~lig~  341 (345)
T PRK13499        332 IILAANIVGL  341 (345)
T ss_pred             HHHHHHHHhh
Confidence            8999887754

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.83  E-value=0.31  Score=46.76  Aligned_cols=127  Identities=17%  Similarity=0.068  Sum_probs=85.7

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHhhccC--HHHHHHHHHHHHHHHHHHHHh----h-------hcCChhhHHHHHHHH
Q 024642          123 KIRSIFLLNVITIVYASDIPILKAAEEIMH--PASFCAVRFVMSAIPFLPFVF----W-------ARDDVKTRNAGIELG  189 (265)
Q Consensus       123 ~~~g~lllll~~llWGss~i~~K~~l~~is--P~~l~~lRfllAallLl~~~~----~-------~r~~~r~~~~~~llG  189 (265)
                      ...|++..++++++||+.++-.|. .++.+  -++.+.  .+++. ++.++..    .       +..+.+.+...++.|
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~--gi~~w-l~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G   80 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVG--GIFSW-LILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG   80 (345)
T ss_pred             hHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHH--HHHHH-HHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence            467999999999999999999999 44444  222211  00111 1111111    0       112445567777888


Q ss_pred             HHHHHHHHHHHHHHhhcchhHHH-HHHHhHHHHHHHHHHH-hcC-------cCcHHHHHHHHHHHHHhhHhhc
Q 024642          190 LWVSLGYFVEALGLLTSDAGRAS-FISLFTVIVVPLFDGM-LGA-------IIPAHTWFGVLISALGVGMLEC  253 (265)
Q Consensus       190 vll~~~~~l~~~gL~~tsa~~Aa-vL~~l~Pvfv~lla~l-lke-------r~s~~~~iGllLa~iGv~LL~~  253 (265)
                      ++-..+...++.++++...+.+- +-.+++-++..++..+ ++|       +-....++|+++.++|+++...
T Consensus        81 ~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         81 ALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             HHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            88778888888999998888885 4457777777777765 343       2225688999999999998876

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.78  E-value=0.074  Score=41.19  Aligned_cols=53  Identities=17%  Similarity=0.322  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHhhcchhHH-HHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHH
Q 024642          191 WVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLI  243 (265)
Q Consensus       191 ll~~~~~l~~~gL~~tsa~~A-avL~~l~Pvfv~lla~l-lker~s~~~~iGllL  243 (265)
                      +....+.++..+++..+.+.+ ++..++..+.+.+++.+ ++|+++..+++|+.+
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l   92 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence            345567788899999999999 77788999999999986 799999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=95.31  E-value=0.0096  Score=55.41  Aligned_cols=126  Identities=15%  Similarity=0.138  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhh----h-cCChhhHHHHHHHHHHHHHHHHHHH
Q 024642          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW----A-RDDVKTRNAGIELGLWVSLGYFVEA  200 (265)
Q Consensus       126 g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~----~-r~~~r~~~~~~llGvll~~~~~l~~  200 (265)
                      +.++.+..+++-+..++..|..-...+.+....+=-+++.+.-++.+..    . ...+||++..+.+|++.+.+..+..
T Consensus       192 gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIllT  271 (346)
T KOG4510|consen  192 GTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILLT  271 (346)
T ss_pred             chHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHHH
Confidence            3455555565556667777776454444333333333333332222221    1 1235677766778888888888999


Q ss_pred             HHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHh
Q 024642          201 LGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML  251 (265)
Q Consensus       201 ~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL  251 (265)
                      .|+|.--||..+++.++..++..++-.+ +++-++.+.|.|++..+...+..
T Consensus       272 m~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~  323 (346)
T KOG4510|consen  272 MGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV  323 (346)
T ss_pred             HHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence            9999999999999999999999999976 79999999999998865555443

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=95.18  E-value=0.004  Score=57.53  Aligned_cols=118  Identities=15%  Similarity=0.186  Sum_probs=84.8

Q ss_pred             HHhhhHHHHHHHhhcc-CHHHHHHHHHHHHHHHHHHHHhhhcCChhh-HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 024642          136 VYASDIPILKAAEEIM-HPASFCAVRFVMSAIPFLPFVFWARDDVKT-RNAGIELGLWVSLGYFVEALGLLTSDAGRASF  213 (265)
Q Consensus       136 lWGss~i~~K~~l~~i-sP~~l~~lRfllAallLl~~~~~~r~~~r~-~~~~~llGvll~~~~~l~~~gL~~tsa~~Aav  213 (265)
                      +=+.++..+-++-.++ .|..=.++-+.+-+++-.++...|++..+. |...+++++.-.-+.++...|.|||+-....+
T Consensus        30 ~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~l  109 (336)
T KOG2766|consen   30 ITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIML  109 (336)
T ss_pred             HHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHH
Confidence            3344444444433323 466667778877778888887776643332 44566666654444455568999999999888


Q ss_pred             HHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642          214 ISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (265)
Q Consensus       214 L~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~  253 (265)
                      +-+-.-..+.+++|+ +|.|-+..++.|+++|++|+.+++.
T Consensus       110 LDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~  150 (336)
T KOG2766|consen  110 LDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVF  150 (336)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEE
Confidence            887777788899997 7999999999999999999988765

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.66  E-value=1  Score=42.63  Aligned_cols=119  Identities=11%  Similarity=0.064  Sum_probs=77.0

Q ss_pred             HHHHHHHhh--ccCHHHHH-HHHHHHHHHHHHHHHhhhc------CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 024642          141 IPILKAAEE--IMHPASFC-AVRFVMSAIPFLPFVFWAR------DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRA  211 (265)
Q Consensus       141 ~i~~K~~l~--~isP~~l~-~lRfllAallLl~~~~~~r------~~~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~A  211 (265)
                      -++-|.++.  +.+...++ .+..+...+.+ .+..+.|      .+++..+.-....+++......-..+++|.+...-
T Consensus        28 ~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v-~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~  106 (314)
T KOG1444|consen   28 TVVNKIVLSSYNFPMGLLLMLLQSLASVLVV-LVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMF  106 (314)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchHH
Confidence            344477765  44444444 35555544444 3333222      23444333333444433322333488999999999


Q ss_pred             HHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCCCCCCc
Q 024642          212 SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPPSV  260 (265)
Q Consensus       212 avL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G~~~~l  260 (265)
                      +++-.+.|+++++...+ +|.|+++..+.++.+..+|..+......+++.
T Consensus       107 tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~  156 (314)
T KOG1444|consen  107 TVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNL  156 (314)
T ss_pred             HHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecc
Confidence            99999999999999986 68899999999999999888776665545554

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=93.85  E-value=0.2  Score=47.52  Aligned_cols=122  Identities=8%  Similarity=-0.017  Sum_probs=82.9

Q ss_pred             hhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhh-h-c-C------Chhh-HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024642          138 ASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW-A-R-D------DVKT-RNAGIELGLWVSLGYFVEALGLLTSD  207 (265)
Q Consensus       138 Gss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~-~-r-~------~~r~-~~~~~llGvll~~~~~l~~~gL~~ts  207 (265)
                      |..|...+.-.+.-=|+.++..-.++=.++-....+. + + +      +|++ ..+.+.+|+..+..-.+.+++++|++
T Consensus        30 ~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVt  109 (349)
T KOG1443|consen   30 GLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVT  109 (349)
T ss_pred             HHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeee
Confidence            3445554443333347777776665544333322221 1 1 1      2333 34556777776666677889999999


Q ss_pred             hhHHHHHHHhHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHhhHhhcCCCCCC
Q 024642          208 AGRASFISLFTVIVVPLFDGMLG-AIIPAHTWFGVLISALGVGMLECSGSPPS  259 (265)
Q Consensus       208 a~~AavL~~l~Pvfv~lla~llk-er~s~~~~iGllLa~iGv~LL~~~G~~~~  259 (265)
                      .+.=+..=+..++|+.+++.++| |++++.-..-+++..+|+++.+.+..+++
T Consensus       110 lSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~  162 (349)
T KOG1443|consen  110 LSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFN  162 (349)
T ss_pred             eeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccccee
Confidence            99888888999999999999885 88888888888888899988887765554

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=93.35  E-value=0.28  Score=46.50  Aligned_cols=129  Identities=16%  Similarity=0.083  Sum_probs=94.6

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHhh----ccCHHHHHHHHHHHHHHHHH-HHHhhhcCChh------h----HHHHHH
Q 024642          123 KIRSIFLLNVITIVYASDIPILKAAEE----IMHPASFCAVRFVMSAIPFL-PFVFWARDDVK------T----RNAGIE  187 (265)
Q Consensus       123 ~~~g~lllll~~llWGss~i~~K~~l~----~isP~~l~~lRfllAallLl-~~~~~~r~~~r------~----~~~~~l  187 (265)
                      ...|.+..+++.+....--+++|..+.    .++++.+..+---++.++|+ |+......+..      .    ....++
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL  240 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence            368999999999999999999999883    58999999999889999888 87654321111      1    112223


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHh
Q 024642          188 LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML  251 (265)
Q Consensus       188 lGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL  251 (265)
                      ..++....+...+.-+..++|-+=.+....=-+++.+.+++ ++++++..+.+|.+++++|+.+-
T Consensus       241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y  305 (316)
T KOG1441|consen  241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLY  305 (316)
T ss_pred             HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHH
Confidence            33444444455667788888877776666666666777765 78899999999999999999874

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.10  E-value=5  Score=34.21  Aligned_cols=126  Identities=11%  Similarity=0.115  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhhcc-CHHHHHHHHHHHHHHHHHHHHhhhc--CCh----hhHHHHHHHHHHHHHHHHHH
Q 024642          127 IFLLNVITIVYASDIPILKAAEEIM-HPASFCAVRFVMSAIPFLPFVFWAR--DDV----KTRNAGIELGLWVSLGYFVE  199 (265)
Q Consensus       127 ~lllll~~llWGss~i~~K~~l~~i-sP~~l~~lRfllAallLl~~~~~~r--~~~----r~~~~~~llGvll~~~~~l~  199 (265)
                      .+..+++..+-..-..+--...+.. +|+...+.-|+.+.+++..+...+.  ...    +.-++..+-|++ ...|.+-
T Consensus         7 ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~l-Ga~~vt~   85 (150)
T COG3238           7 LLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLL-GAIFVTS   85 (150)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccch-hhhhhhh
Confidence            3344444443333333332222333 5999999999999988887766532  111    111222223322 2222221


Q ss_pred             -HHHHhhcchhH-HHHHHHhHHHHHHHHHHH--h---cCcCcHHHHHHHHHHHHHhhHhhc
Q 024642          200 -ALGLLTSDAGR-ASFISLFTVIVVPLFDGM--L---GAIIPAHTWFGVLISALGVGMLEC  253 (265)
Q Consensus       200 -~~gL~~tsa~~-AavL~~l~Pvfv~lla~l--l---ker~s~~~~iGllLa~iGv~LL~~  253 (265)
                       ........++. .+++.+-+-+...++..+  +   +++++..+++|+++.++|++++..
T Consensus        86 s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~  146 (150)
T COG3238          86 SILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR  146 (150)
T ss_pred             hHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence             12222333333 345556666667777654  3   567889999999999999655433

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=93.03  E-value=0.069  Score=50.58  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=80.9

Q ss_pred             HHHHhh--c-cCHHHHHHHHHHHHHHHHHHHHhhh-cC--C---hhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 024642          144 LKAAEE--I-MHPASFCAVRFVMSAIPFLPFVFWA-RD--D---VKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFI  214 (265)
Q Consensus       144 ~K~~l~--~-isP~~l~~lRfllAallLl~~~~~~-r~--~---~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~AavL  214 (265)
                      -|.+++  + --|..++.+.+..+.+.++..-..+ .+  +   +..+...+.+|++...+-.+-+.++.+.+++-.-.+
T Consensus        36 nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~i  115 (316)
T KOG1441|consen   36 NKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTI  115 (316)
T ss_pred             eHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHH
Confidence            377666  3 3488888887777777666554433 11  1   123666677888877777788899999999999999


Q ss_pred             HHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642          215 SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (265)
Q Consensus       215 ~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~  253 (265)
                      =+++|+++.+++++ .+|+.++..++.++....|+.+-..
T Consensus       116 Ka~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~  155 (316)
T KOG1441|consen  116 KALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV  155 (316)
T ss_pred             HhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence            99999999999997 5888887766666666666655444

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=92.70  E-value=0.16  Score=45.76  Aligned_cols=58  Identities=19%  Similarity=0.203  Sum_probs=53.2

Q ss_pred             HHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642          196 YFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (265)
Q Consensus       196 ~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~  253 (265)
                      .+.+..+++..+++.++-+.++.-.|+.+++++ +|+|+...++++.++++.|++++..
T Consensus        67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay  125 (290)
T KOG4314|consen   67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAY  125 (290)
T ss_pred             CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEe
Confidence            455668999999999999999999999999997 8999999999999999999998874

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=91.67  E-value=1.2  Score=41.97  Aligned_cols=116  Identities=20%  Similarity=0.253  Sum_probs=80.3

Q ss_pred             hhhHHHHHHHhh----cc----CHHHHHHHHHHHHHHHHHHHHhhhcC-Ch------------hh---HHHH--HHHHHH
Q 024642          138 ASDIPILKAAEE----IM----HPASFCAVRFVMSAIPFLPFVFWARD-DV------------KT---RNAG--IELGLW  191 (265)
Q Consensus       138 Gss~i~~K~~l~----~i----sP~~l~~lRfllAallLl~~~~~~r~-~~------------r~---~~~~--~llGvl  191 (265)
                      ..+-++.|.+-+    ..    .|+..+..=|+-=++++..+...+++ +.            ++   ....  +.=.++
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~   95 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC   95 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence            345677787632    22    47777777777777777777665421 10            11   1111  111233


Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642          192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (265)
Q Consensus       192 l~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~-llker~s~~~~iGllLa~iGv~LL~~  253 (265)
                      -..+-.+++.|+.+|+++.--.+-+..-+|+.+++. ++++++..++|+|+.....|++++..
T Consensus        96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~  158 (372)
T KOG3912|consen   96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS  158 (372)
T ss_pred             HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence            234456778999999999888888888999999997 48999999999999999999987644

>TIGR00803 nst UDP-galactose transporter

Probab=91.11  E-value=0.36  Score=42.33  Aligned_cols=58  Identities=17%  Similarity=0.201  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhH
Q 024642          193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM  250 (265)
Q Consensus       193 ~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~L  250 (265)
                      ..+..+...-+++.++..-++...+.++++.+++.+ ++++++..+++|+.+.+.|+.+
T Consensus       163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            334445567889999999999999999999999986 7999999999999999998753

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=90.70  E-value=0.62  Score=37.79  Aligned_cols=111  Identities=13%  Similarity=0.110  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhhhHHHHHHHhhccCH------HHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 024642          128 FLLNVITIVYASDIPILKAAEEIMHP------ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEAL  201 (265)
Q Consensus       128 lllll~~llWGss~i~~K~~l~~isP------~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll~~~~~l~~~  201 (265)
                      ..++.++++||...+++|.+...++-      -...++|-.....          .+++.+.   -+++- -.+..+++.
T Consensus         6 ~~lvaVgllWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~----------l~w~Y~i---PFllN-qcgSaly~~   71 (125)
T KOG4831|consen    6 DKLVAVGLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLF----------LNWEYLI---PFLLN-QCGSALYYL   71 (125)
T ss_pred             HHHHHHHHHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHH----------HhHHHHH---HHHHH-HhhHHHHHH
Confidence            45677889999999999997653321      2222222211110          0112222   22221 112334456


Q ss_pred             HHhhcchhHHH-HHHHhHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHhhHhh
Q 024642          202 GLLTSDAGRAS-FISLFTVIVVPLFDGMLGAIIP-AHTWFGVLISALGVGMLE  252 (265)
Q Consensus       202 gL~~tsa~~Aa-vL~~l~Pvfv~lla~llker~s-~~~~iGllLa~iGv~LL~  252 (265)
                      -++.++-+.+. +-.++.-.|+.+.+..++|+.+ ++.++|..+...|+.+.+
T Consensus        72 tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   72 TLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             HHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            67777666665 4456777888899988998876 789999999999987643

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=90.45  E-value=4.4  Score=38.49  Aligned_cols=128  Identities=13%  Similarity=0.054  Sum_probs=88.4

Q ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHhh--ccCHHHHHHHHHHHHHHHHHHHHhhhc----------CChhhHHHHHHHHH
Q 024642          123 KIRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWAR----------DDVKTRNAGIELGL  190 (265)
Q Consensus       123 ~~~g~lllll~~llWGss~i~~K~~l~--~isP~~l~~lRfllAallLl~~~~~~r----------~~~r~~~~~~llGv  190 (265)
                      ...|+.+++.--++=|......+-+..  .++++.+.+.--+..++.=...+.-.+          ..+.-++..++...
T Consensus       170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~  249 (327)
T KOG1581|consen  170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST  249 (327)
T ss_pred             chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH
Confidence            356777777666666777766666554  688888888777776665554433222          12233455566666


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhH
Q 024642          191 WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM  250 (265)
Q Consensus       191 ll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~L  250 (265)
                      +..++..+.+..++.-.+-.-+.|+.+-=++..+++.+ ++++++..+|+|+++.|.|+.+
T Consensus       250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            66666666667777655555556666677788888876 8999999999999999999976

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=89.98  E-value=2.8  Score=40.87  Aligned_cols=132  Identities=13%  Similarity=0.083  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhh----ccCHHHHHHHHHHHHHHHHHHHHhhh---cCC------hhhHHHHHHHHH
Q 024642          124 IRSIFLLNVITIVYASDIPILKAAEE----IMHPASFCAVRFVMSAIPFLPFVFWA---RDD------VKTRNAGIELGL  190 (265)
Q Consensus       124 ~~g~lllll~~llWGss~i~~K~~l~----~isP~~l~~lRfllAallLl~~~~~~---r~~------~r~~~~~~llGv  190 (265)
                      ..|.++.+++++++|..-++.|.=.+    .+|--.+-.+=-++..++++|.++.-   +.+      ..+....++.|.
T Consensus       246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l  325 (416)
T KOG2765|consen  246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL  325 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence            67999999999999999999988554    35555555555666677777554421   211      112222223333


Q ss_pred             HH-HHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHHh-cCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642          191 WV-SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECSG  255 (265)
Q Consensus       191 ll-~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~ll-ker~s~~~~iGllLa~iGv~LL~~~G  255 (265)
                      +. .+.=++|..|.-+|++-.+++=++++.-..++.-.++ ++.++...++|.+..++|.+++...+
T Consensus       326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence            32 2233577899999999988877766655666666666 56788999999999999998876544

>PRK02237 hypothetical protein; Provisional

Probab=89.69  E-value=6.2  Score=31.96  Aligned_cols=49  Identities=18%  Similarity=0.260  Sum_probs=34.2

Q ss_pred             cchhHH-HHHHHhHHHHHHHHHHHh-cCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          206 SDAGRA-SFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       206 tsa~~A-avL~~l~Pvfv~lla~ll-ker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                      .+.+++ +.--+...+...+..|+. ++|+++..++|..++++|+.++...
T Consensus        56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~  106 (109)
T PRK02237         56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA  106 (109)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence            334444 233344455555666654 8899999999999999999888653

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.98  E-value=0.056  Score=51.22  Aligned_cols=121  Identities=13%  Similarity=0.119  Sum_probs=84.2

Q ss_pred             hhh-hhhHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcCChhh-HHHHHHHHHHH-HHH
Q 024642          119 FAS-KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKT-RNAGIELGLWV-SLG  195 (265)
Q Consensus       119 ~m~-~~~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~~~r~-~~~~~llGvll-~~~  195 (265)
                      .|+ +...|.++.+...++-|+++++-|.+..+...   ...|..-+.-          .-.++ +++   .|++. .++
T Consensus        14 ~~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~~ra~~gg~----------~yl~~~~Ww---~G~ltm~vG   77 (335)
T KOG2922|consen   14 RMSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SGLRAGEGGY----------GYLKEPLWW---AGMLTMIVG   77 (335)
T ss_pred             hhccCceeeeeehhhccEEEeeehhhhHHHHHHHhh---hcccccCCCc----------chhhhHHHH---HHHHHHHHH
Confidence            454 45889999999999999999999996543322   2222111110          11122 222   23332 233


Q ss_pred             HHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642          196 YFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG  255 (265)
Q Consensus       196 ~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G  255 (265)
                      -..-|.+..+.+++..+-+.++..++..+++.. ++|+++....+|.+++++|-.+++..+
T Consensus        78 ei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha  138 (335)
T KOG2922|consen   78 EIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA  138 (335)
T ss_pred             hHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence            344456677888888888889999999999975 799999999999999999999888754

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=87.79  E-value=5.8  Score=36.78  Aligned_cols=131  Identities=10%  Similarity=0.011  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhh--ccCHHHHHHHHHHHHHHHHHHHHhhhc----------CChhhHHHHHHHHHHH
Q 024642          125 RSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWAR----------DDVKTRNAGIELGLWV  192 (265)
Q Consensus       125 ~g~lllll~~llWGss~i~~K~~l~--~isP~~l~~lRfllAallLl~~~~~~r----------~~~r~~~~~~llGvll  192 (265)
                      .|.+++++.-.+=|....+....-.  .-+.-.+.+.-.+-+.+.|..-+...+          +....+....++++..
T Consensus       172 ~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s  251 (337)
T KOG1580|consen  172 FGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS  251 (337)
T ss_pred             hHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4667777777777777776644322  122233333333333333332222111          2223355566677776


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642          193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG  255 (265)
Q Consensus       193 ~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G  255 (265)
                      .++..+.+..+.+-++-.-+++..+--+|+.+++.+ ++..++.+||+|..+.+.|+.+=..+|
T Consensus       252 ~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~G  315 (337)
T KOG1580|consen  252 CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDG  315 (337)
T ss_pred             HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence            666667777888877777788888889999999986 799999999999999999987755444

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=87.56  E-value=11  Score=30.52  Aligned_cols=52  Identities=19%  Similarity=0.347  Sum_probs=36.8

Q ss_pred             HhhcchhHH-HHHHHhHHHHHHHHHHHh-cCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          203 LLTSDAGRA-SFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       203 L~~tsa~~A-avL~~l~Pvfv~lla~ll-ker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                      ++-.+.+++ +.--+...+...+..|.. ++||++..++|..++++|+.++...
T Consensus        51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~  104 (107)
T PF02694_consen   51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA  104 (107)
T ss_pred             cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence            444445554 333455555566666654 8899999999999999999988764

; GO: 0016020 membrane

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=85.97  E-value=1.2  Score=41.18  Aligned_cols=79  Identities=10%  Similarity=-0.014  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCCC--------
Q 024642          186 IELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS--------  256 (265)
Q Consensus       186 ~llGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G~--------  256 (265)
                      +.+++-.-..+..-+.+++|.+=-+..+--+.-|+=+++++.+ .+++.++++...+++.++|+++...+.+        
T Consensus        89 aAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~  168 (337)
T KOG1580|consen   89 AACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDK  168 (337)
T ss_pred             HHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCccc
Confidence            3444444344566678999988777766678899999999987 5788999999999999999999887522        


Q ss_pred             CCCccccc
Q 024642          257 PPSVSIFK  264 (265)
Q Consensus       257 ~~~lGDll  264 (265)
                      .+.+|+++
T Consensus       169 t~g~GElL  176 (337)
T KOG1580|consen  169 TFGFGELL  176 (337)
T ss_pred             ccchHHHH
Confidence            46677754

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=84.58  E-value=11  Score=30.32  Aligned_cols=37  Identities=16%  Similarity=0.248  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHh-cCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          218 TVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       218 ~Pvfv~lla~ll-ker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                      ..+...+..++. +.++.+..|+|..++++|+.++...
T Consensus        68 yI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~  105 (109)
T COG1742          68 YIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG  105 (109)
T ss_pred             HHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence            333444444554 7899999999999999999887654

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=80.38  E-value=26  Score=32.67  Aligned_cols=76  Identities=9%  Similarity=0.154  Sum_probs=58.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HHhHHHHHHHHHHH-hcCcCcHH----HHHHHHHHHHHhhHhhc
Q 024642          180 KTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDGM-LGAIIPAH----TWFGVLISALGVGMLEC  253 (265)
Q Consensus       180 r~~~~~~llGvll~~~~~l~~~gL~~tsa~~AavL-~~l~Pvfv~lla~l-lker~s~~----~~iGllLa~iGv~LL~~  253 (265)
                      +.+...++.|++-..+...++.++++...+++-=+ .+++-+.+.+++.+ |+|-.+..    -.+++++.++|+.+...
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            56778888898888888899999999888887644 47778888888876 78855532    34577788889988766


Q ss_pred             CC
Q 024642          254 SG  255 (265)
Q Consensus       254 ~G  255 (265)
                      .+
T Consensus       123 ~~  124 (269)
T PF06800_consen  123 QD  124 (269)
T ss_pred             cc
Confidence            43

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.17
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.0

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.17  E-value=2.3e-05  Score=61.57  Aligned_cols=64  Identities=17%  Similarity=0.230  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHhhcchhHHHHH-HHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642          192 VSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG  255 (265)
Q Consensus       192 l~~~~~l~~~gL~~tsa~~AavL-~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G  255 (265)
                      ....|.++..++++.+.+.+.-+ .++.|+++.+++++ ++|+++..+++|+++.++|++++...+
T Consensus        40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            45667788899999999999766 79999999999986 799999999999999999999886643

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.00  E-value=1.8e-05  Score=64.84  Aligned_cols=63  Identities=17%  Similarity=0.231  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhhcchhHHHHH-HHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642          192 VSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (265)
Q Consensus       192 l~~~~~l~~~gL~~tsa~~AavL-~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~  254 (265)
                      ...+|.++..++++.+++.+..+ .++.|+++.+++++ ++|+++..+++|+++.++|++++...
T Consensus        40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            45667888999999999999877 89999999999986 79999999999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00