Citrus Sinensis ID: 024650

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MGMQAASAAASLSFIYSLKWGAPNSAQIFVTPSNKLPLKTNATHFPCPKFTNNKVKTRATLGEKDDIAPPTPLLVQEKEQSNREVEESVKILKKAAKTRKVAAAEILSALSVIEKAKIDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGPIGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDPFFVWFYIDEEIAVARGRAGGTAFWCRCRRVTTSYSL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHccccccccccEEEEEEccccccccEEEEEEEEEEEccccEEEEEEEEcccccEEEEEEEcccccEEEEEEcEEEEEEccccccccccccccccccccccccccEEEEEEcccEEEEEccccEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHEEEEEEccccccEEcccccccccccccccccccccccccEEEEEEccccccccccccHEEEHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHcccccccccEEEEEEEEccccccccEEccHHEEEEccccccEEccEEEccccEEEEcccEcccccEEEEEEEEEEEEEcccccEEEcccccccccccccccccEEEEEEEcccEEEEEccccHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MGMQAASAAASLSFIYSlkwgapnsaqifvtpsnklplktnathfpcpkftnnkvktratlgekddiapptpllvqekeqsNREVEESVKILKKAAKTRKVAAAEILSALSVIEKAKIDYSGfletlggsespgrTWMLIFTAEKklksgryfpvTAVQRFDAAAKRIEngvylgpigcltfegRFSWKKRMLAFIFERVhikigplkpleigfgqkdnrepstvskdpffvWFYIDEEIAVARGRaggtafwcrcrrvttsysl
Flexible Loop (DISEMBL)
MGMQAASAAASLSFIYSLKWGAPNSAQIFVTPSNKLPLKTNathfpcpkftnnkVKTRATlgekddiapptpllvqekeqsnreveeSVKILKKAAKTRKVAAAEILSALSVIEKAKIDYSGFLetlggsespgrtWMLIFTAEkklksgryFPVTAVQRFDAAAKRIENGVYLGPIGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDPFFVWFYIDEEIAVARGraggtafwcrcrrvttsysl
Low Complexity Region (SEG)
MGMQAASAAASLSFIYSLKWGAPNSAQIFVTPSNKLPLKTNATHFPCPKFTNNKVKTRATLGEKDDIAPPTPLLVQEKEQSNREVEESVKILkkaaktrkvaaaEILSALSVIEKAKIDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGPIGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDPFFVWFYIDEEIAVARGRAGGTAFWCRCRRVTTSYSL
Disordered region (IsUnstruct)
**********SLSFIYSLKWGAPNSAQIFVTPSNKLPLKTNATHFPCPKFT********************************************AKTRKVAAAEILSALSVIEKAKIDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGPIGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFG***********KDPFFVWFYIDEEIAVARGRAGGTAFWCRCRRVT*****
Disordered Region (DISOPRED)
**************IYSLKW**************************************************************************************LSALSVIEKA******FLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGPIGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPL*****************DPFFVWFYIDEEIAVARGRAGGTAFWCRCRRVTT****
Disordered Region (DISEMBL)
**********SLSFIYSLKWGAPNSAQIFVTPSNKLPLKTNATHFPCPKFTNNKVKTRATLGEKDDIAPPTPLLVQ***********SVKILKKAAKTRKVAAAEILSALSVIEKAKIDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGPIGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDPFFVWFYIDEEIAVARGRAGGTAFWCRCRRVTTSYSL
Disordered Region (DISPRO)
********AASLSFIYSLKWGAPNSAQIFVTPSNKLPLKTNATHFPCPKFTNNKVKTRATLGEKDDIAPPTPLLVQEKEQSNREVEESVKILKKAAKTRKVAAAEILSALSVIEKAKIDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGPIGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDPFFVWFYIDEEIAVARGRAGGTAFWCRCRRVTTSYSL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGMQAASAAASLSFIYSLKWGAPNSAQIFVTPSNKLPLKTNATHFPCPKFTNNKVKTRATLGEKDDIAPPTPLLxxxxxxxxxxxxxxxxxxxxxAKTRKVAAAEILSALSVIEKAKIDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGPIGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDPFFVWFYIDEEIAVARGRAGGTAFWCRCRRVTTSYSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
224118714	274	predicted protein [Populus trichocarpa]	0.950	0.919	0.643	8e-91
225456077	259	PREDICTED: uncharacterized protein LOC10	0.958	0.980	0.649	6e-88
356513004	256	PREDICTED: uncharacterized protein LOC10	0.913	0.945	0.644	6e-86
255583538	269	conserved hypothetical protein [Ricinus	0.769	0.758	0.744	2e-85
351721020	254	uncharacterized protein LOC100305950 [Gl	0.939	0.980	0.639	4e-85
357521545	232	hypothetical protein MTR_8g106690 [Medic	0.8	0.913	0.706	2e-81
449439107	270	PREDICTED: uncharacterized protein LOC10	0.769	0.755	0.726	2e-81
449497531	271	PREDICTED: uncharacterized LOC101217184	0.769	0.752	0.726	3e-81
297850200	226	hypothetical protein ARALYDRAFT_889219 [	0.750	0.880	0.714	4e-79
18394569	226	uncharacterized protein [Arabidopsis tha	0.747	0.876	0.703	4e-77

>gi|224118714|ref|XP_002317888.1| predicted protein [Populus trichocarpa] gi|222858561|gb|EEE96108.1| predicted protein [Populus trichocarpa]

 Score =  339 bits (869), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 182/283 (64%), Positives = 207/283 (73%), Gaps = 31/283 (10%)

Query: 1   MGMQAASAAASLSFIYSLKWGAPNSAQIFVTPSNKLPLKTNATHFPCP----------KF 50
           MG QA +AA+ LS I    W A NS+QI     + LPLK    HFP            K+
Sbjct: 1   MGSQATAAASYLSCI---NWVALNSSQISSLNPSFLPLKAETCHFPLHSDIKQDASSLKY 57

Query: 51  TN------NKVKTRATLGEKDDIAPPTPLLVQEKE------QSNREVEESVKILKKAAKT 98
            N        V+TRATL E    + P P+ VQE+E      Q + EV+ESVK+LK AAKT
Sbjct: 58  PNLHLLKLRNVRTRATLDE----SAPAPIRVQEEEDEGPQPQPSEEVKESVKVLKNAAKT 113

Query: 99  RKVAAAEILSALSVIEKAKIDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAV 158
           RKVAA  +LSAL+VIEKAK+D SGFL TLGGS+SPGRTWMLIFTAEKKL  GRYFP+TA+
Sbjct: 114 RKVAAEVVLSALTVIEKAKLDPSGFLNTLGGSKSPGRTWMLIFTAEKKLDRGRYFPLTAI 173

Query: 159 QRFDAAAKRIENGVYLGPIGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKD 218
           QRFDAA KRIENGVYLGPIG LTFEGR SWK R+LAFIFER+ IKIGPL P EI  GQK+
Sbjct: 174 QRFDAAGKRIENGVYLGPIGFLTFEGRLSWKNRILAFIFERMRIKIGPLNPFEISLGQKE 233

Query: 219 NREPSTVSKDPFFVWFYIDEEIAVARGRAGGTAFWCRCRRVTT 261
           +REPST  KDPFF+WFYIDEE+AVARGR+GGTAFWCRCRRV T
Sbjct: 234 DREPST--KDPFFIWFYIDEELAVARGRSGGTAFWCRCRRVAT 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456077|ref|XP_002277812.1| PREDICTED: uncharacterized protein LOC100252476 [Vitis vinifera] gi|297734278|emb|CBI15525.3| unnamed protein product [Vitis vinifera]

 Score =  329 bits (844), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 172/265 (64%), Positives = 199/265 (75%), Gaps = 11/265 (4%)

Query: 3   MQAASAAASLSFIYSLKWGAPNSAQIFVTPS-----NKLPLKTNATHFPCPKFTNNKVKT 57
           M ++SAA S     S      NS   F+ PS      K  L    +H   P+F  ++ KT
Sbjct: 1   MGSSSAAPSNLLSTSFTCVTSNSTHTFLRPSKLSCITKTTLPPKISHTYLPRF--HRGKT 58

Query: 58  RATLGEKDDIAPPTPLLVQEKEQSNREVEESVKILKKAAKTRKVAAAEILSALSVIEKAK 117
           RA L E D+    TP+ VQE +Q + EVEESVK+LK AAKTR+V   E+LSALSVIEKA 
Sbjct: 59  RAALDE-DNQTITTPIAVQE-QQPSEEVEESVKVLKNAAKTRRVPKEEVLSALSVIEKAN 116

Query: 118 IDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGPI 177
           +D SGFL+TLGGS+SPGRTWMLIFTA+K+LK G YFP+TAVQRFDAA KRIENGVYLGPI
Sbjct: 117 LDPSGFLDTLGGSKSPGRTWMLIFTAQKQLKGGSYFPLTAVQRFDAAGKRIENGVYLGPI 176

Query: 178 GCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDPFFVWFYID 237
           GCLTFEGRFSWKKR+LAFIFE + IK+GP  PLEI  GQKD+REP T  KDPFF+WFYID
Sbjct: 177 GCLTFEGRFSWKKRILAFIFECIRIKVGPFNPLEISLGQKDDREPGT--KDPFFIWFYID 234

Query: 238 EEIAVARGRAGGTAFWCRCRRVTTS 262
           EEIAVARGR+GGTAFWCRC RV +S
Sbjct: 235 EEIAVARGRSGGTAFWCRCSRVMSS 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513004|ref|XP_003525204.1| PREDICTED: uncharacterized protein LOC100785302 [Glycine max]

 Score =  323 bits (827), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 163/253 (64%), Positives = 197/253 (77%), Gaps = 11/253 (4%)

Query: 14  FIYSLKWGAPNSAQIFVTPSNKLPLKTNATHFPCP----KFTNNKVKTRATLGE-KDDIA 68
           + +S +   PNS+  F  P N +PL+    H+       KF   + +TRATL + + D  
Sbjct: 10  YAFSFRLCFPNSSPQF-KPLNAIPLR-RTKHYNNNNNNVKFPRERTRTRATLDDVETDQL 67

Query: 69  PPTPLLVQEKEQSNREVEESVKILKKAAKTRKVAAAEILSALSVIEKAKIDYSGFLETLG 128
              PL+  E E++ ++VEESVK+LK AAKTRKVAA EILSALS+IEKAK+D S F ETLG
Sbjct: 68  SSIPLV--ENEKAKKDVEESVKVLKDAAKTRKVAAEEILSALSIIEKAKVDPSAFFETLG 125

Query: 129 GSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGPIGCLTFEGRFSW 188
           G ESPGRTWMLIFTAEK+LK GRYFP+TAVQRFDAAAKRIENG+YLGPIG LTFEGR SW
Sbjct: 126 GKESPGRTWMLIFTAEKQLKGGRYFPLTAVQRFDAAAKRIENGIYLGPIGQLTFEGRLSW 185

Query: 189 KKRMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDPFFVWFYIDEEIAVARGRAG 248
           KKR+LAF+FE + IK+GPL+PLEI  G+K+++EPST  KDPFF+WFY+DEEIAVARGR+G
Sbjct: 186 KKRILAFVFENIRIKVGPLQPLEISLGKKEDKEPST--KDPFFIWFYVDEEIAVARGRSG 243

Query: 249 GTAFWCRCRRVTT 261
           GTAFWCRCRR   
Sbjct: 244 GTAFWCRCRRANN 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583538|ref|XP_002532526.1| conserved hypothetical protein [Ricinus communis] gi|223527757|gb|EEF29860.1| conserved hypothetical protein [Ricinus communis]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 157/211 (74%), Positives = 179/211 (84%), Gaps = 7/211 (3%)

Query: 54  KVKTRATLGEKDDIAPPTPLLVQEKE----QSNREVEESVKILKKAAKTRKVAAAEILSA 109
           ++KTRA L EKD     T  LVQE++    Q++ EVEESVK+LK AAKTRKV  AE+LSA
Sbjct: 61  RLKTRAALDEKDQTLS-TSFLVQEEQELQTQTDPEVEESVKVLKNAAKTRKVPVAEVLSA 119

Query: 110 LSVIEKAKIDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIE 169
           LSVIEKA +D S FL+TLGGS SPGRTWMLIFTA+KKLKSG+YFP+TAVQRFDAA KRIE
Sbjct: 120 LSVIEKANVDPSTFLDTLGGSASPGRTWMLIFTAQKKLKSGKYFPLTAVQRFDAAGKRIE 179

Query: 170 NGVYLGPIGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDP 229
           NGVY G +GCLTFEGRF+WKKR+LAFIFER+ +KIG L PLEI  GQKD+REPST  KDP
Sbjct: 180 NGVYFGSLGCLTFEGRFTWKKRILAFIFERIRVKIGLLNPLEINLGQKDDREPST--KDP 237

Query: 230 FFVWFYIDEEIAVARGRAGGTAFWCRCRRVT 260
           FF+WFYIDEEIAVARGR+GGTAFW RCRR+T
Sbjct: 238 FFIWFYIDEEIAVARGRSGGTAFWVRCRRIT 268

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721020|ref|NP_001235404.1| uncharacterized protein LOC100305950 [Glycine max] gi|255627079|gb|ACU13884.1| unknown [Glycine max]

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 165/258 (63%), Positives = 202/258 (78%), Gaps = 9/258 (3%)

Query: 8   AAASLSFIY--SLKWGAPNSAQIFVTPSNKLPLK-TNATHFPCPKFTNNKVKTRATLGE- 63
           A +S+  +Y  S +   PNS+  F  P N +PL  T   +    KF   + +TRATL + 
Sbjct: 2   AMSSIHTLYASSFRLCFPNSSPQF-KPLNAIPLGGTKLYNNNNVKFPRERTRTRATLDDV 60

Query: 64  KDDIAPPTPLLVQEKEQSNREVEESVKILKKAAKTRKVAAAEILSALSVIEKAKIDYSGF 123
           + D    TPL+  E +++ ++V+ESVK+LK AAKTRKVAA +ILSALS+IEKAK+D S F
Sbjct: 61  ETDQLSSTPLV--ENDKAKKDVDESVKVLKDAAKTRKVAAEDILSALSIIEKAKVDPSAF 118

Query: 124 LETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGPIGCLTFE 183
            ETLGG ESPGRTWMLIFTAEK+LK GRYFP+TAVQRFDAAAKRIENGVYLGPIG LTFE
Sbjct: 119 FETLGGKESPGRTWMLIFTAEKQLKGGRYFPLTAVQRFDAAAKRIENGVYLGPIGQLTFE 178

Query: 184 GRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDPFFVWFYIDEEIAVA 243
           GR S+KKR+LAF+FE + IK+GPL+PLEI  G+K+++EPST  KDPFF+WFY+DEEIAVA
Sbjct: 179 GRLSFKKRILAFVFENIRIKVGPLQPLEISLGKKEDKEPST--KDPFFIWFYVDEEIAVA 236

Query: 244 RGRAGGTAFWCRCRRVTT 261
           RGR+GGTAFWCRCRRV  
Sbjct: 237 RGRSGGTAFWCRCRRVNN 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521545|ref|XP_003631061.1| hypothetical protein MTR_8g106690 [Medicago truncatula] gi|355525083|gb|AET05537.1| hypothetical protein MTR_8g106690 [Medicago truncatula]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 154/218 (70%), Positives = 178/218 (81%), Gaps = 6/218 (2%)

Query: 42  ATHFPCPKFTNNKVKTRATLGEKDDIAPPTPLLVQEKEQSNREVEESVKILKKAAKTRKV 101
           ++ F   K    +++TRAT    DDI   TPL+V +     REVEE VK+LK AAKTRKV
Sbjct: 19  SSSFKPSKPLRTRIRTRATF---DDIQK-TPLVVVQDNNPKREVEECVKLLKNAAKTRKV 74

Query: 102 AAAEILSALSVIEKAKIDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRF 161
            A EILSALS+IEKAKID S FL+TLGG ESPGRTWMLIFTA+KKL  G YFP+TAVQRF
Sbjct: 75  PAEEILSALSLIEKAKIDPSAFLDTLGGKESPGRTWMLIFTAKKKLDGGGYFPLTAVQRF 134

Query: 162 DAAAKRIENGVYLGPIGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDNRE 221
           DAAAKRIENGV+LGPIG LTFEGR SWK R+L+FIFE + IK+GPLKPL+I  GQK++RE
Sbjct: 135 DAAAKRIENGVFLGPIGQLTFEGRLSWKNRILSFIFENLRIKVGPLKPLQISLGQKEDRE 194

Query: 222 PSTVSKDPFFVWFYIDEEIAVARGRAGGTAFWCRCRRV 259
           PST  KDPFF+WFY+DEEIAVARGR+GGTAFWCRCR+V
Sbjct: 195 PST--KDPFFIWFYVDEEIAVARGRSGGTAFWCRCRQV 230

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439107|ref|XP_004137329.1| PREDICTED: uncharacterized protein LOC101217184 [Cucumis sativus]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 154/212 (72%), Positives = 172/212 (81%), Gaps = 8/212 (3%)

Query: 55  VKTRATLGEKDDIAPPTPLLVQEKEQS-----NREVEESVKILKKAAKTRKVAAAEILSA 109
           +KT A L  KD     TP+LV+E+  +     N EVE+SVK+LK AAKTRKV A E+LSA
Sbjct: 62  LKTCAALDGKDPNGA-TPVLVEEESSTSSNIVNEEVEKSVKVLKNAAKTRKVPAEEVLSA 120

Query: 110 LSVIEKAKIDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIE 169
            SV+EKAK+D S F  TLGG+ SPGRTWMLIFTAEKKLK GRYFPVTA+QRFDAA KRIE
Sbjct: 121 FSVLEKAKLDPSKFFNTLGGTSSPGRTWMLIFTAEKKLKKGRYFPVTAIQRFDAAGKRIE 180

Query: 170 NGVYLGPIGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDP 229
           NGV+LGPIG LTFEGR SWK R+LAFIFERV IKIGPL PLEI  GQK+ REPST  KDP
Sbjct: 181 NGVFLGPIGSLTFEGRLSWKTRILAFIFERVRIKIGPLNPLEISLGQKEEREPST--KDP 238

Query: 230 FFVWFYIDEEIAVARGRAGGTAFWCRCRRVTT 261
            F+WFY+DEEIAVARGR+GGTAFWCRCRRV T
Sbjct: 239 CFIWFYVDEEIAVARGRSGGTAFWCRCRRVNT 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497531|ref|XP_004160428.1| PREDICTED: uncharacterized LOC101217184 [Cucumis sativus]

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 154/212 (72%), Positives = 172/212 (81%), Gaps = 8/212 (3%)

Query: 55  VKTRATLGEKDDIAPPTPLLVQEKEQS-----NREVEESVKILKKAAKTRKVAAAEILSA 109
           +KT A L  KD     TP+LV+E+  +     N EVE+SVK+LK AAKTRKV A E+LSA
Sbjct: 63  LKTCAALDGKDPNGA-TPVLVEEESSTSSNIVNEEVEKSVKVLKNAAKTRKVPAEEVLSA 121

Query: 110 LSVIEKAKIDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIE 169
            SV+EKAK+D S F  TLGG+ SPGRTWMLIFTAEKKLK GRYFPVTA+QRFDAA KRIE
Sbjct: 122 FSVLEKAKLDPSKFFNTLGGTSSPGRTWMLIFTAEKKLKKGRYFPVTAIQRFDAAGKRIE 181

Query: 170 NGVYLGPIGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDP 229
           NGV+LGPIG LTFEGR SWK R+LAFIFERV IKIGPL PLEI  GQK+ REPST  KDP
Sbjct: 182 NGVFLGPIGSLTFEGRLSWKTRILAFIFERVRIKIGPLNPLEISLGQKEEREPST--KDP 239

Query: 230 FFVWFYIDEEIAVARGRAGGTAFWCRCRRVTT 261
            F+WFY+DEEIAVARGR+GGTAFWCRCRRV T
Sbjct: 240 CFIWFYVDEEIAVARGRSGGTAFWCRCRRVNT 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850200|ref|XP_002892981.1| hypothetical protein ARALYDRAFT_889219 [Arabidopsis lyrata subsp. lyrata] gi|297338823|gb|EFH69240.1| hypothetical protein ARALYDRAFT_889219 [Arabidopsis lyrata subsp. lyrata]

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 148/207 (71%), Positives = 170/207 (82%), Gaps = 8/207 (3%)

Query: 57  TRATLGEKDDIAPPTPLLVQEKEQSNREVEESVKILKKAAKTRKVAAAEILSALSVIEKA 116
            +AT+  ++ I PP      + +  N+EV ESV +LK AAKTRKVAA EIL+A S IEKA
Sbjct: 27  VKATVDGRNRIVPPA-----KDQIPNKEVTESVNLLKTAAKTRKVAADEILAAFSAIEKA 81

Query: 117 KIDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGP 176
           KID S FLETLGG+ESPGRTWMLIFTAEKKL  GRYFP+TAVQRFDAA KRIENGVYLGP
Sbjct: 82  KIDPSTFLETLGGTESPGRTWMLIFTAEKKLNKGRYFPLTAVQRFDAAGKRIENGVYLGP 141

Query: 177 IGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKD-NREPSTVSKDPFFVWFY 235
           +G LTFEGRFSWK R+LAF+FE++ IKIGPL PLEI  G+KD   EPS  +KDPFF+WFY
Sbjct: 142 LGALTFEGRFSWKNRILAFVFEQIRIKIGPLDPLEISLGKKDAEEEPS--NKDPFFIWFY 199

Query: 236 IDEEIAVARGRAGGTAFWCRCRRVTTS 262
           IDEEIAVARGR+GGTAFWCRCRR+ +S
Sbjct: 200 IDEEIAVARGRSGGTAFWCRCRRIASS 226

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394569|ref|NP_564046.1| uncharacterized protein [Arabidopsis thaliana] gi|8671786|gb|AAF78392.1|AC069551_25 T10O22.3 [Arabidopsis thaliana] gi|15081664|gb|AAK82487.1| AT1g18060/T10F20.23 [Arabidopsis thaliana] gi|20147167|gb|AAM10300.1| AT1g18060/T10F20.23 [Arabidopsis thaliana] gi|110738963|dbj|BAF01402.1| hypothetical protein [Arabidopsis thaliana] gi|332191548|gb|AEE29669.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  293 bits (751), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 145/206 (70%), Positives = 166/206 (80%), Gaps = 8/206 (3%)

Query: 57  TRATLGEKDDIAPPTPLLVQEKEQSNREVEESVKILKKAAKTRKVAAAEILSALSVIEKA 116
            +AT+  ++ I PP      + +  N++V ESV +LK AAKTRKVAA EIL+A S IEKA
Sbjct: 28  VKATVDGRNQIVPPA-----KDQIPNKQVTESVNVLKTAAKTRKVAADEILAAFSAIEKA 82

Query: 117 KIDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGP 176
           KID S FLETLGG ESPGRTWMLIFTAEKKL  GRYFP+TAVQRFDAA KRIENGVYLGP
Sbjct: 83  KIDPSTFLETLGGPESPGRTWMLIFTAEKKLTKGRYFPLTAVQRFDAAGKRIENGVYLGP 142

Query: 177 IGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDN-REPSTVSKDPFFVWFY 235
            G LTFEGRFSWK R+LAF+FE++ IKIGPL PLE   G+KD   EPS  +KDPFF+WFY
Sbjct: 143 FGALTFEGRFSWKNRILAFVFEQIRIKIGPLDPLEFSLGKKDAVEEPS--NKDPFFIWFY 200

Query: 236 IDEEIAVARGRAGGTAFWCRCRRVTT 261
           IDEEIAVARGR+GGTAFWCRCRR+ +
Sbjct: 201 IDEEIAVARGRSGGTAFWCRCRRIAS 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2194120	226	AT1G18060 "AT1G18060" [Arabido	0.739	0.867	0.665	1.3e-68

TAIR|locus:2194120 AT1G18060 "AT1G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 137/206 (66%), Positives = 157/206 (76%)

Query:    58 RATLGEKDDIAPPTPLLVQEKEQ-SNREVEESVKILXXXXXXXXXXXXEILSALSVIEKA 116
             +AT+  ++ I PP       K+Q  N++V ESV +L            EIL+A S IEKA
Sbjct:    29 KATVDGRNQIVPPA------KDQIPNKQVTESVNVLKTAAKTRKVAADEILAAFSAIEKA 82

Query:   117 KIDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGP 176
             KID S FLETLGG ESPGRTWMLIFTAEKKL  GRYFP+TAVQRFDAA KRIENGVYLGP
Sbjct:    83 KIDPSTFLETLGGPESPGRTWMLIFTAEKKLTKGRYFPLTAVQRFDAAGKRIENGVYLGP 142

Query:   177 IGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDN-REPSTVSKDPFFVWFY 235
              G LTFEGRFSWK R+LAF+FE++ IKIGPL PLE   G+KD   EPS  +KDPFF+WFY
Sbjct:   143 FGALTFEGRFSWKNRILAFVFEQIRIKIGPLDPLEFSLGKKDAVEEPS--NKDPFFIWFY 200

Query:   236 IDEEIAVARGRAGGTAFWCRCRRVTT 261
             IDEEIAVARGR+GGTAFWCRCRR+ +
Sbjct:   201 IDEEIAVARGRSGGTAFWCRCRRIAS 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      265       253   0.00083  114 3  11 22  0.44    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  190 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.06u 0.14s 20.20t   Elapsed:  00:00:01
  Total cpu time:  20.06u 0.14s 20.20t   Elapsed:  00:00:01
  Start:  Fri May 10 17:39:20 2013   End:  Fri May 10 17:39:21 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XII0424 hypothetical protein (274 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	99.16

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=99.16  E-value=7.9e-10  Score=93.67  Aligned_cols=148  Identities=22%  Similarity=0.276  Sum_probs=95.9

Q ss_pred             CCCChHHHHHHHHHHHHhhcccCcc--ccccCCCCCCCCceEEEEEeeeecc------cccceec-eeEEeeecccceEE
Q 024650           99 RKVAAAEILSALSVIEKAKIDYSGF--LETLGGSESPGRTWMLIFTAEKKLK------SGRYFPV-TAVQRFDAAAKRIE  169 (265)
Q Consensus        99 rkv~~~~V~~ALl~LEKa~~~~s~f--~e~L~G~~~pg~~WrLvFtt~k~l~------~G~Y~P~-~avq~fda~~~~Ie  169 (265)
                      ....-++|.+++.+||...-.+...  .+.|.|      .|+|+|++.....      ...++++ .+.|.+|...++++
T Consensus        21 ~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G------~W~Lvytt~~~~~~~l~~~~~~~~~~~~v~Q~id~~~~~~~   94 (198)
T PF04755_consen   21 SPEDREEIEELVEELEALNPTPDPADSLPLLDG------RWELVYTTSPEIRSLLQRGRLPGVRVGRVFQTIDADNGRVE   94 (198)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCc------EEEEEeecCCCccccccccccccccccceEEEEECCCceEE
Confidence            3445578999999999987444332  255788      9999999844222      2223445 67777899889999


Q ss_pred             eeeEeccce----eeEEEeeeec-CceeeeEEeceEEEeecCC--------cce--eecCCCC----CCCCCCCCCCCCc
Q 024650          170 NGVYLGPIG----CLTFEGRFSW-KKRMLAFIFERVHIKIGPL--------KPL--EIGFGQK----DNREPSTVSKDPF  230 (265)
Q Consensus       170 N~V~LGpl~----~L~F~G~f~~-kk~lLaF~F~~i~lklG~~--------~l~--~i~lg~~----~~f~p~~~kk~PF  230 (265)
                      |.|.+.++|    .+...+.+.. ...-+.+.|++..++....        .-.  .++....    ..+.........+
T Consensus        95 N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~  174 (198)
T PF04755_consen   95 NVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGISDELPVPLPLPGGSPKGW  174 (198)
T ss_pred             EEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhcccccccccccccccCCCCCceE
Confidence            999987764    2333445555 3577899999987755221        000  0100000    0111111346679


Q ss_pred             eEEEEecCceEEeecCCCeeEe
Q 024650          231 FVWFYIDEEIAVARGRAGGTAF  252 (265)
Q Consensus       231 Fa~f~vde~iiaARGRGGGLAL  252 (265)
                      |...|+||++-+.||..|++-+
T Consensus       175 l~~tYLDedlRI~Rg~~G~~fV  196 (198)
T PF04755_consen  175 LDTTYLDEDLRISRGNKGSLFV  196 (198)
T ss_pred             EEEEEECCCeEEEEcCCCCEEE
Confidence            9999999999999999999754

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00