Citrus Sinensis ID: 024653

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MADFAQDLQYFRASSSFPFLDIDPNIEQINNNLSVLDNTSLLNYQSFMPFSNPDNFFEFPGNLAENFPGNFIQNNMLPVCHTVTSTKCESKNRKAVEISESSNEDSSPVSEIETNKRKKNSGRRKRVKGNEKEEEKSKEVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDAVETMQKAKAYKAKEMERLMKEGNFACSSSSSFLTITRPL
Secondary Structure (PSIPRED)
cccHHHHHHHHccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccHHHHHHHHHHcccccccccccccccEEcccc
Coil and Loop (DISEMBL)
MADFAQDLQyfrasssfpfldidpnieqinnnlsvldntsllnyqsfmpfsnpdnffefpgnlaenfpgnfiqnnmlpvchtvtstkcesknrkaveisessnedsspvseietnkrkknsgrrkrvkgnekeeeKSKEVVHVRarrgqatdshsLAERVRRGKINERLRCLQdivpgcyktmGMTMMLDEIINYVQSLQNQVEFLSMKLTAastfydfnsesDAVETMQKAKAYKAKEMERLMKEgnfacsssssfltitrpl
Flexible Loop (DISEMBL)
MADFAQDLQYFRASSSFPFLDIDPNIEQINNNLSVLDNTSLLNYQSFMPFSNPDNFFEFPGNLAENFPGNFIQNNMLPVCHTVTstkcesknrkaveisessnedsspvseietnkrkknsgrrkrvkgnekeeekskevvhvrarrgqatdshslaervrrgkinerlrclqdIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDAVETMQKAKAYKAKEMERLMKegnfacsssssfltitrpl
Low Complexity Region (SEG)
MADFAQDLQYFRASSSFPFLDIDPNIEQINNNLSVLDNTSLLNYQSFMPFSNPDNFFEFPGNLAENFPGNFIQNNMLPVCHTVTSTKCESKNRKAVeisessnedsspvseIETnkrkknsgrrkrvkgnekeeekskevvhvRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDAVETMQKAKAYKAKEMERLMKEGNFACSSSSSFLTITRPL
Disordered region (IsUnstruct)
*******LQYFRASSSFPFLDIDPNIEQINNNLSVLDNTSLLNYQSFMPFSNPDNFFEFPGNLAENFPGNFIQNNMLPVCHTVTS******************************************************************************KINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFN********************************************
Disordered Region (DISOPRED)
*ADFA***************************************************************************************************************************************************************INERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLT**********************************************LTITRP*
Disordered Region (DISEMBL)
MADFAQDLQYFRASSSFPFLDIDPNIEQINNNLSVLDNTSLLNYQSFMPFSNPDNFFEFPGNLAENFPGNFIQNNMLPVCHTVT***********************************************************************LAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDAVETMQKAKAYKAKEMERLMKEGNFAC*************
Disordered Region (DISPRO)
*******L*******SFPFLDIDPNIEQ*NNNLSVLDNTS************************************************************************************************SKEVVHVRARRGQ***SHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDAVETMQKAKAYKAKEMERLMKEGNFACSSSSSFLTITRPL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADFAQDLQYFRASSSFPFLDIDPNIEQINNNLSVLDNTSLLNYQSFMPFSNPDNFFEFPGNLAENFPGNFIQNNMLPVCHTVTSTKCESKNRKAVEISESSNEDSSPVSEIETNKRKKNSGRRKRVKGNEKEEEKSKEVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDAVETMQKAKAYKAKEMERLMKEGNFACSSSSSFLTITRPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q8GWK7	261	Transcription factor BEE	yes	no	0.878	0.888	0.544	2e-54
Q8GZ13	260	Transcription factor BEE	no	no	0.821	0.834	0.526	6e-50
A4D998	223	Transcription factor bHLH	no	no	0.443	0.524	0.661	1e-40
Q93W88	286	Transcription factor bHLH	no	no	0.424	0.391	0.592	1e-32
Q9SRT2	456	Transcription factor bHLH	no	no	0.363	0.210	0.647	6e-32
Q9FJL4	498	Transcription factor bHLH	no	no	0.454	0.240	0.571	7e-31
Q9CAA9	486	Transcription factor bHLH	no	no	0.443	0.240	0.556	2e-30
Q9LK48	371	Transcription factor bHLH	no	no	0.579	0.412	0.429	8e-30
Q9C670	390	Transcription factor bHLH	no	no	0.496	0.335	0.5	6e-29
Q0JXE7	343	Transcription factor BPE	no	no	0.462	0.355	0.481	7e-29

>sp|Q8GWK7|BEE3_ARATH Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1

 Score =  212 bits (540), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 147/270 (54%), Positives = 176/270 (65%), Gaps = 38/270 (14%)

Query: 14  SSSFPFLDIDPNIEQINNNLSVLDNTSLLNYQSFMP-FSNP-DNFF-------EFPGNLA 64
           SS F    +D  I Q    L+ L NT L ++Q+F P FS+  D+ F        FPG   
Sbjct: 5   SSDFQTFTMDDPIRQ----LAELSNT-LHHFQTFPPPFSSSLDSLFFHNQFPDHFPGKSL 59

Query: 65  EN-------FPGNFIQNNMLPVCHTVTSTKCESKNRK----AVEISESSNED-----SSP 108
           EN       FP N IQNN        +S++ ++K RK    AV  SE+S  D     SS 
Sbjct: 60  ENNFHQGIFFPSN-IQNN------EESSSQFDTKKRKSLMEAVSTSENSVSDQTLSTSSA 112

Query: 109 VSEIETNKRKKNSGRRKRVKGNEKEEEKSKEVVHVRARRGQATDSHSLAERVRRGKINER 168
              I  N   KN+  R+  +   +EEEK +EVVHVRARRGQATDSHS+AERVRRGKINER
Sbjct: 113 QVSINGNISTKNNSSRRGKRSKNREEEKEREVVHVRARRGQATDSHSIAERVRRGKINER 172

Query: 169 LRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDAVET 228
           L+CLQDIVPGCYKTMGM  MLDEIINYVQSLQNQVEFLSMKLTAAS++YDFNSE+DAVE+
Sbjct: 173 LKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSETDAVES 232

Query: 229 MQKAKAYKAKEMERLMKEGNFACSSSSSFL 258
           MQKAKA +A EM +  ++G+    SSS  L
Sbjct: 233 MQKAKAREAVEMGQ-GRDGSSVFHSSSWTL 261

Positive regulator of brassinosteroid signaling.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GZ13|BEE1_ARATH Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1

 Score =  197 bits (501), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 129/245 (52%), Positives = 161/245 (65%), Gaps = 28/245 (11%)

Query: 20  LDIDPNIEQ---INNNLSVLDNTSLLNYQSFMPFSNP----------DNFFEFPGNLAEN 66
           +DI  +I Q   +NNN       S L++Q+F P S                 FPGN  ++
Sbjct: 16  MDIYSSITQAADLNNN------NSNLHFQTFHPSSTSLESLFLHHHQQQLLHFPGNSPDS 69

Query: 67  FPGNFIQNNMLPVCHTVTSTKCESKNRKAVEISESSNEDSSPVSEIETNKRKKNSG---- 122
                  ++ L   H +     E+K RKA+  + SS+E +S VS+  TN     +G    
Sbjct: 70  SNNFSSTSSFLHSDHNIVD---ETKKRKALLPTLSSSE-TSGVSD-NTNVIATETGSLRR 124

Query: 123 RRKRVKGNEKEEEKSKEVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKT 182
            ++  K  E+E+EK +EVVHVRARRGQATDSHSLAERVRRGKINERLRCLQD+VPGCYK 
Sbjct: 125 GKRLKKKKEEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKA 184

Query: 183 MGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDAVETMQKAKAYKAKEMER 242
           MGM  MLDEIINYVQSLQNQVEFLSMKLTAAS+FYDFNSE+DAV++MQ+AKA +  EM R
Sbjct: 185 MGMATMLDEIINYVQSLQNQVEFLSMKLTAASSFYDFNSETDAVDSMQRAKARETVEMGR 244

Query: 243 LMKEG 247
             ++G
Sbjct: 245 QTRDG 249

Positive regulator of brassinosteroid signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|A4D998|BH075_ARATH Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 95/118 (80%), Gaps = 1/118 (0%)

Query: 130 NEKEEEKSKEVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMML 189
           N  E +K K+VVHVRA+RGQATDSHSLAERVRR KINERL+CLQD+VPGCYK MGM +ML
Sbjct: 91  NGDETQKPKDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVML 150

Query: 190 DEIINYVQSLQNQVEFLSMKLTAASTFYDFNS-ESDAVETMQKAKAYKAKEMERLMKE 246
           D II+YV+SLQNQ+EFLSMKL+AAS  YD NS + +  +  Q    + A EMER+++E
Sbjct: 151 DVIIDYVRSLQNQIEFLSMKLSAASACYDLNSLDIEPTDIFQGGNIHSAAEMERILRE 208

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/113 (59%), Positives = 84/113 (74%), Gaps = 1/113 (0%)

Query: 115 NKRKKNSGRRKRVKGNEKEEEKSKEVVHVRARRGQATDSHSLAERVRRGKINERLRCLQD 174
           N ++   GR+ + +    +EE   + +HVRARRGQATDSHSLAERVRR KI+ER+R LQ+
Sbjct: 108 NSKEGVEGRKSKKQKRGSKEEPPTDYIHVRARRGQATDSHSLAERVRREKISERMRTLQN 167

Query: 175 IVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAAS-TFYDFNSESDAV 226
           +VPGC K  G  +MLDEIINYVQ+LQ QVEFLSMKLT+ S   YDF S+ D +
Sbjct: 168 LVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSISPVVYDFGSDLDGL 220

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1

 Score =  137 bits (346), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 80/102 (78%), Gaps = 6/102 (5%)

Query: 125 KRVKGNEKEEEKSKEV------VHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPG 178
           KR K +E+  +K+K +      +HVRARRGQATDSHSLAERVRR KI+ER++ LQD+VPG
Sbjct: 234 KRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPG 293

Query: 179 CYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFN 220
           C K  G  +MLDEIINYVQSLQ QVEFLSMKL++ +T  DFN
Sbjct: 294 CNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFN 335

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 72/126 (57%), Positives = 85/126 (67%), Gaps = 6/126 (4%)

Query: 130 NEKEEEKSKEVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMML 189
           N K  E  K+ +HVRARRGQATDSHSLAERVRR KI ER++ LQD+VPGC K  G  +ML
Sbjct: 288 NTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALML 347

Query: 190 DEIINYVQSLQNQVEFLSMKLTAAS-TFYDFNSESDAVETMQKAKAYKAKEMERLMKEGN 248
           DEIINYVQSLQ QVEFLSMKL++ + T  DFN     V+ +            RL +EG 
Sbjct: 348 DEIINYVQSLQRQVEFLSMKLSSVNDTRLDFN-----VDALVSKDVMIPSSNNRLHEEGL 402

Query: 249 FACSSS 254
            + SSS
Sbjct: 403 QSKSSS 408

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 85/124 (68%), Gaps = 7/124 (5%)

Query: 100 ESSNEDSSPVSEIETNKRKKNSGRRKRVKGNEKEEEKSKEVVHVRARRGQATDSHSLAER 159
           E  N++ SP S      +K NSG+++   G +  +      +HVRARRGQAT+SHSLAER
Sbjct: 267 EKRNDEQSPNSP----GKKSNSGKQQ---GKQSSDPPKDGYIHVRARRGQATNSHSLAER 319

Query: 160 VRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDF 219
           VRR KI+ER++ LQD+VPGC K  G  +MLDEIINYVQSLQ QVEFLSMKL   +   DF
Sbjct: 320 VRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDF 379

Query: 220 NSES 223
           N E 
Sbjct: 380 NLEG 383

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1

 Score =  130 bits (328), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 99/184 (53%), Gaps = 31/184 (16%)

Query: 79  VCHTVTSTKCESKNRKAVEISESSNEDSSPVSEIETNKRKKNSGRRKRVKGNE------- 131
           V   V +TK  S+ RK++    S N   SP S   T    K SG     KG +       
Sbjct: 103 VSDRVHTTKSNSRKRKSIP---SGNGKESPASSSLTASNSKVSGENGGSKGGKRSKQDVA 159

Query: 132 --------------------KEEEKSKEVVHVRARRGQATDSHSLAERVRRGKINERLRC 171
                               K  E  K+ +HVRARRGQATDSHSLAER RR KI+ER+  
Sbjct: 160 GSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTL 219

Query: 172 LQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESD-AVETMQ 230
           LQD+VPGC +  G  +MLDEIINYVQSLQ QVEFLSMKL   +   +FN+ +  + E +Q
Sbjct: 220 LQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMEFNANASLSTEMIQ 279

Query: 231 KAKA 234
             ++
Sbjct: 280 PGES 283

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1

 Score =  127 bits (320), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/152 (50%), Positives = 94/152 (61%), Gaps = 21/152 (13%)

Query: 80  CHTVTSTKCESKNRKAV------EISESSNEDSSPVSEIETNKRKKNSGRRKRVKGNEKE 133
           C   +S    SK RK +      E  +   ++ SP S    N  K NS         EK+
Sbjct: 165 CGQTSSKGFSSKKRKRIGKDCEEEEDKKQKDEQSPTS----NANKTNS---------EKQ 211

Query: 134 EEKSKE--VVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDE 191
              S +   +H+RARRGQAT+SHSLAERVRR KI+ER++ LQD+VPGC K  G  +MLDE
Sbjct: 212 PSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDE 271

Query: 192 IINYVQSLQNQVEFLSMKLTAASTFYDFNSES 223
           IINYVQSLQ Q+EFLSMKL+A +   DFN ES
Sbjct: 272 IINYVQSLQCQIEFLSMKLSAVNPVLDFNLES 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1

 Score =  127 bits (320), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 91/137 (66%), Gaps = 15/137 (10%)

Query: 79  VCHTVTSTKCESKNRKAVEISESSNEDSSPVSEIETNKRKKNSGRRKRVKGNEKEEEKSK 138
           +  T+ +++ E+K +K  E+ +   E  S  +E E  K               ++ E +K
Sbjct: 87  IVSTIGASEGENKRQKIDEVCDGKAEAESLGTETEQKK---------------QQMEPTK 131

Query: 139 EVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQS 198
           + +HVRARRGQATDSHSLAER RR KI+ER++ LQD+VPGC K +G  ++LDEIINY+QS
Sbjct: 132 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQS 191

Query: 199 LQNQVEFLSMKLTAAST 215
           LQ QVEFLSMKL A ++
Sbjct: 192 LQRQVEFLSMKLEAVNS 208

Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
224118802	273	predicted protein [Populus trichocarpa]	0.920	0.890	0.642	1e-79
224135389	270	predicted protein [Populus trichocarpa]	0.958	0.937	0.608	2e-78
356529573	273	PREDICTED: transcription factor BEE 3-li	0.977	0.945	0.566	3e-76
356520601	272	PREDICTED: transcription factor BEE 3-li	0.973	0.944	0.559	1e-74
356554137	305	PREDICTED: transcription factor BEE 3-li	0.950	0.822	0.581	4e-72
223702430	268	putative basic helix-loop-helix protein	0.920	0.906	0.596	2e-68
356527821	252	PREDICTED: transcription factor BEE 3-li	0.859	0.900	0.563	3e-67
356513103	246	PREDICTED: transcription factor BEE 3-li	0.909	0.975	0.544	5e-66
449439537	265	PREDICTED: transcription factor BEE 3-li	0.867	0.864	0.579	1e-65
388519201	274	unknown [Lotus japonicus]	0.939	0.905	0.548	2e-62

>gi|224118802|ref|XP_002317910.1| predicted protein [Populus trichocarpa] gi|222858583|gb|EEE96130.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 171/266 (64%), Positives = 204/266 (76%), Gaps = 23/266 (8%)

Query: 1   MADFAQDLQYFRASSSFPFLDIDPNIEQINN----NLSVLDNTSLLNYQSFMPFSNPDNF 56
           MADF  DLQ FR    FPFLDIDP++  ++     + ++LDN S+ N  SFMPF++ DNF
Sbjct: 1   MADFTADLQSFRPP--FPFLDIDPSMVALSQFTEVSQAILDNPSVNNIHSFMPFTS-DNF 57

Query: 57  F-----EFPGNLAENFPGNFIQNN--MLPVCHTVTSTK-----CESKNRKAVEISESSNE 104
           F     EFPGNLAE F G F QN+  ++PV    T+        ESK RKA+++SESS+ 
Sbjct: 58  FSHQAPEFPGNLAEGFAGIFHQNDQTVMPVSQPFTTPGNESEFQESKKRKAMDVSESSSM 117

Query: 105 DSSP-VSEIETNKRKKNSGRR-KRVKGNEKEEEKSKEVVHVRARRGQATDSHSLAERVRR 162
           +SSP VSE  + +R  NS RR K VK NE  + K K+VVHVRARRGQATDSHSLAERVRR
Sbjct: 118 NSSPQVSESGSKRRNVNSSRRGKGVKSNE--DGKPKDVVHVRARRGQATDSHSLAERVRR 175

Query: 163 GKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSE 222
           GKINERLRCLQDIVPGCYKTMGM +MLDEIINYVQSLQNQVEFLSMKLTAASTFYDFN+E
Sbjct: 176 GKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNAE 235

Query: 223 SDAVETMQKAKAYKAKEMERLMKEGN 248
           +DA+ETMQ+AKA +AKE++R M+EG+
Sbjct: 236 TDAIETMQRAKAQEAKELQRAMREGS 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135389|ref|XP_002322061.1| predicted protein [Populus trichocarpa] gi|222869057|gb|EEF06188.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 166/273 (60%), Positives = 204/273 (74%), Gaps = 20/273 (7%)

Query: 1   MADFAQDLQYFRASSSFPFLDIDPNIEQIN-----NNLSVLDNTSLLNYQSFMPFSNPDN 55
           MADF  DLQ F+    FPFLDID ++  IN     N    LDN  + N+ SF PF++ +N
Sbjct: 1   MADFTVDLQSFKPP--FPFLDIDASMAAINQFTEVNQAIQLDNPIMNNFHSFTPFTS-NN 57

Query: 56  FF-----EFPGNLAENF-PGNFIQN--NMLPVCHTVTSTKCESK----NRKAVEISESSN 103
           FF     EFPGN A +F PG+F QN  N++PV  T T    ES+     R+A+++SESS 
Sbjct: 58  FFSHQAPEFPGNFAGSFLPGSFHQNDQNVMPVSQTFTIPAKESEFQESKRRAMDVSESSC 117

Query: 104 EDSSPVSEIETNKRKKNSGRRKRVKGNEKEEEKSKEVVHVRARRGQATDSHSLAERVRRG 163
            +S P      +K++K+S R KRVK NE+EEEK++EVVHVRARRGQATDSHSLAERVRRG
Sbjct: 118 MNSYPRVSESGSKKRKSSRRGKRVKSNEEEEEKTREVVHVRARRGQATDSHSLAERVRRG 177

Query: 164 KINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSES 223
           KINERLRCLQDIVPGCYKTMGM +MLDEIINYVQSLQNQVEFLSMKLTAASTFYDFN+E+
Sbjct: 178 KINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNAET 237

Query: 224 DAVETMQKAKAYKAKEMERLMKEGNFACSSSSS 256
           +A+ET+Q+AKA + KE++R M+EG+   + S S
Sbjct: 238 EAIETVQRAKAQETKELQRAMREGSGGLAQSHS 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529573|ref|XP_003533364.1| PREDICTED: transcription factor BEE 3-like [Glycine max]

 Score =  291 bits (744), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 158/279 (56%), Positives = 197/279 (70%), Gaps = 21/279 (7%)

Query: 1   MADFAQDLQY---FRASSSFPFLDIDPNIEQINN----NLSVLDNTSLLNYQSFMPFSNP 53
           MA+F +++Q        S FPFL+IDP++E +N     N  VL+N++L    + +PFS  
Sbjct: 1   MAEFTENMQLQSNIIRPSQFPFLEIDPSMELLNQFIGMNQHVLENSNLSTMHNLVPFSC- 59

Query: 54  DNFF-----EFPGNLAENFPGNFIQNNMLPVCHTVTSTK---CESKNRKAVEISESSNED 105
           D F      EFPGNL ENFP   + +N LPV   +   +    E K RK+V++ E+S+ +
Sbjct: 60  DTFLGPQEPEFPGNLEENFPA-LVNHNALPVSLPIFQAENEIHEGKKRKSVDLPETSSAN 118

Query: 106 SSPVSEIETNKRKKNSGRRKRVKGNEKEEEKSKEVVHVRARRGQATDSHSLAERVRRGKI 165
           S+P      +K K +SGR KRVK N  EEEK+KEVVHVRARRGQATDSHSLAERVRRGKI
Sbjct: 119 STPAVSESGSKIKHSSGRGKRVKSNVTEEEKAKEVVHVRARRGQATDSHSLAERVRRGKI 178

Query: 166 NERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDA 225
           NE+LRCLQ+IVPGCYKTMGM +MLDEIINYVQSLQ+QVEFLS+KLTAASTFYDFNSE+DA
Sbjct: 179 NEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDA 238

Query: 226 VETMQKAKAYKAKEMERLMKEGNFACSSSSSFLTITRPL 264
           +ETMQ+A+A +AKE+ +  KEG        SF     PL
Sbjct: 239 LETMQRARASEAKELGKYKKEG----YGGVSFFQPAWPL 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520601|ref|XP_003528950.1| PREDICTED: transcription factor BEE 3-like [Glycine max]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 156/279 (55%), Positives = 199/279 (71%), Gaps = 22/279 (7%)

Query: 1   MADFAQDLQY---FRASSSFPFLDIDPNIEQINN----NLSVLDNTSLLNYQSFMPFSNP 53
           MA+F +++Q     R S  FPFL+IDP++E +N     N  VL+N++L+   + +PFS  
Sbjct: 1   MAEFTENMQLQSNIRPSQ-FPFLEIDPSMELLNQFLGMNQHVLENSNLIPMHNLVPFSC- 58

Query: 54  DNFF-----EFPGNLAENFPGNFIQNNMLPVCHTVTSTK---CESKNRKAVEISESSNED 105
           D F      E PGNL ENFP + + +N LP+   +   +    E K RK++++ E+S+ +
Sbjct: 59  DTFLGPQEPECPGNLEENFPAH-VNHNALPISLPIFQAENEIHEGKKRKSMDLPETSSAN 117

Query: 106 SSPVSEIETNKRKKNSGRRKRVKGNEKEEEKSKEVVHVRARRGQATDSHSLAERVRRGKI 165
           S+P      +K K +SGR KRVK N  EEEK+KEVVHVRARRGQATDSHSLAERVRRGKI
Sbjct: 118 STPAVSESGSKIKHSSGRGKRVKSNVTEEEKAKEVVHVRARRGQATDSHSLAERVRRGKI 177

Query: 166 NERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDA 225
           NE+LRCLQ+IVPGCYKTMGM +MLDEIINYVQSLQ+QVEFLS+KLTAASTFYDFNSE+DA
Sbjct: 178 NEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDA 237

Query: 226 VETMQKAKAYKAKEMERLMKEGNFACSSSSSFLTITRPL 264
           +ETMQ+A+A +AKE+ +  KEG        SF     PL
Sbjct: 238 LETMQRARASEAKELGKYKKEG----YGGVSFFQPAWPL 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554137|ref|XP_003545405.1| PREDICTED: transcription factor BEE 3-like [Glycine max]

 Score =  277 bits (708), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 153/263 (58%), Positives = 189/263 (71%), Gaps = 12/263 (4%)

Query: 1   MADFAQDLQYFRASSSFPFLDIDPNIEQIN-----NNLSVLDNTSLLNYQSFMPFSNPDN 55
           MA+F ++LQ     SSFPFLDIDP++E +N     N L VLDN++L+ Y SF  F     
Sbjct: 1   MAEFTENLQRI-GPSSFPFLDIDPSMELLNQFIGMNQLYVLDNSNLMPYFSFDTFLLGPQ 59

Query: 56  FFEFPGNLAENFPGNFIQ---NNMLPVCHTVTSTK---CESKNRKAVEISESSNEDSSPV 109
             EFPGNL E+FP  F     NN LP+   +   +    E K RK++++ E+S+ +S+P 
Sbjct: 60  EPEFPGNLEEDFPFLFNHVNHNNALPISLPIFQAENEIHEGKKRKSMDLPETSSVNSTPK 119

Query: 110 SEIETNKRKKNSGRRKRVKGNEKEEEKSKEVVHVRARRGQATDSHSLAERVRRGKINERL 169
                NK K +SGR KRVK N  EEEK+KEVV+VRAR GQATDS +LAERVRRGKINE+L
Sbjct: 120 VSESGNKFKHSSGRGKRVKNNVTEEEKAKEVVNVRARSGQATDSRNLAERVRRGKINEKL 179

Query: 170 RCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDAVETM 229
           R LQ+IVPGCYKTMGM +MLDEIINYVQSLQNQVEFLS+KLTA STFYDFNSE DA+ETM
Sbjct: 180 RYLQNIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSLKLTAPSTFYDFNSEIDALETM 239

Query: 230 QKAKAYKAKEMERLMKEGNFACS 252
           Q+A+A +AKE+    +EG   C+
Sbjct: 240 QRARASEAKELGMYKREGYGGCA 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223702430|gb|ACN21646.1| putative basic helix-loop-helix protein BHLH5 [Lotus japonicus] gi|388495576|gb|AFK35854.1| unknown [Lotus japonicus]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/260 (59%), Positives = 190/260 (73%), Gaps = 17/260 (6%)

Query: 1   MADFAQDLQYFRASSSFPFLDIDPNIEQINN----NLSVLDNTSLLNYQSFMPFSNPDNF 56
           MA+F  D Q  R SS FPFLDID N+E +N+    N   LDN S+LN Q+ M FS+   F
Sbjct: 1   MAEFTADWQSLRPSS-FPFLDID-NMELLNHLKGVNSHTLDN-SILNMQNLMQFSSGSFF 57

Query: 57  F----EFPGNLAENFPG--NFIQNNMLPVCHTVTSTKCESKNRKAVEISESSNEDSSP-V 109
                EF GNL EN PG  +    N  PV   ++S + E + RKA  +S  S+ +S+P V
Sbjct: 58  CSSEPEFQGNLEENMPGLVHHFNQNAAPVSPPISSVENEGRKRKATNMSGPSSANSTPSV 117

Query: 110 SEIETNKRKKNSGRRKRVKGN--EKEEEKSKEVVHVRARRGQATDSHSLAERVRRGKINE 167
           SE E+ K K  SGR KRVK N  E+E++KS +VVHVRARRGQATDSHSLAERVRRGKINE
Sbjct: 118 SESES-KIKNCSGRGKRVKKNMMEEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINE 176

Query: 168 RLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDAVE 227
           +L+CLQ+IVPGCYKTMGM +MLDEIINYVQSLQ+QVEFLSMKLTAASTFYDFNSE +++E
Sbjct: 177 KLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAASTFYDFNSEINSLE 236

Query: 228 TMQKAKAYKAKEMERLMKEG 247
            MQ+A+  +AKE+ + + EG
Sbjct: 237 AMQRARVSEAKELAKYVTEG 256

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527821|ref|XP_003532505.1| PREDICTED: transcription factor BEE 3-like [Glycine max]

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 146/259 (56%), Positives = 179/259 (69%), Gaps = 32/259 (12%)

Query: 1   MADFAQDLQYFRASSSFPFLDIDPNIEQINNNLSVLDNTSLLNYQSFMPFSNPDNFF--- 57
           MA+F  DLQ  R    FPFLDID              N  + N+   MPFS  ++F    
Sbjct: 1   MAEFTADLQSLR----FPFLDID--------------NMEIQNF--MMPFSC-ESFLGSP 39

Query: 58  --EFPGNLAE-NFPG--NFIQNNMLPVCHTVTSTK---CESKNRKAVEISESSNEDSSPV 109
             EFPGNL E NFP     + +N +PV   + S K    E + RKA +I E S+ +S+P 
Sbjct: 40  EAEFPGNLLEENFPALVQCVDHNEVPVLVPIGSVKNEIHEGQKRKATDICEPSSANSTPA 99

Query: 110 SEIETNKRKKNSGRRKRVKGNEKEEEKSKEVVHVRARRGQATDSHSLAERVRRGKINERL 169
                +K K +SGR KRVK N  E++K  EVVHVRA+RGQATDSHSLAERVRRGKINE+L
Sbjct: 100 VSESGSKTKNSSGRGKRVKRNSIEDKKPNEVVHVRAKRGQATDSHSLAERVRRGKINEKL 159

Query: 170 RCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDAVETM 229
           RCLQ+IVPGCYKTMGM +MLDEIINYVQSLQ+QVEFLSMKLTAAST+YD NSESDA+ETM
Sbjct: 160 RCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAASTYYDLNSESDALETM 219

Query: 230 QKAKAYKAKEMERLMKEGN 248
           Q+A+A + KE+ + ++EG+
Sbjct: 220 QRARASEVKELGKCVREGS 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513103|ref|XP_003525253.1| PREDICTED: transcription factor BEE 3-like [Glycine max]

 Score =  256 bits (655), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 147/270 (54%), Positives = 182/270 (67%), Gaps = 30/270 (11%)

Query: 1   MADFAQDLQYFRASSSFPFLDIDPNIEQINNNLSVLDNTSLLNYQSFMPFSNPDNFF--- 57
           MA+F  DLQ  R    FPFLDID N+E  N                 MPFS  ++F    
Sbjct: 1   MAEFTADLQSLR----FPFLDID-NMEMQN---------------LMMPFSC-ESFLGSP 39

Query: 58  --EFPGNLAENFPGNFIQNNMLPVCHTVTSTKCESKNRKAVEISESSNEDSSPVSEIETN 115
             EF GNL ENFP +     ++P+ ++V +   E + RKA +I E S+ +S+P      +
Sbjct: 40  EAEFAGNLEENFPDHNEVPVLVPIINSVKNEIHEGQKRKATDIWEPSSANSTPAVFESGS 99

Query: 116 KRKKNSGRRKRVKGNEKEEEKSKEVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDI 175
           K K + GR KRVK N  E++K  EVVHVRA+RGQATDSHSLAERVRRGKINE+LRCLQ+I
Sbjct: 100 KTKNSCGRGKRVKRNMIEDKKPNEVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNI 159

Query: 176 VPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDAVETMQKAKAY 235
           VPGCYKTMGM +MLDEIINYVQSLQ+QVEFLSMKL AAST+YDFNSESD +ETMQ+A+A 
Sbjct: 160 VPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLNAASTYYDFNSESDVLETMQRARAS 219

Query: 236 KAKEMERLMKEGNFACSSSSSF-LTITRPL 264
           + KE++R ++E    C   S F  T + PL
Sbjct: 220 EVKELDRYVRE---ECEGVSCFEPTWSWPL 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439537|ref|XP_004137542.1| PREDICTED: transcription factor BEE 3-like [Cucumis sativus] gi|449532109|ref|XP_004173026.1| PREDICTED: transcription factor BEE 3-like [Cucumis sativus]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 150/259 (57%), Positives = 187/259 (72%), Gaps = 30/259 (11%)

Query: 15  SSFPFLDIDPNIEQINNNLSVLDNTSLLNYQSFMPFS--NPDNFFEFPGNLAENFPGNFI 72
           SSFP  D  PN+E + ++ S    +S+ N+  F+PFS  N + F +FP N  EN   +F 
Sbjct: 8   SSFPLED--PNLELMASHFS----SSIPNFTHFLPFSTTNTEIFSQFPPNFPENNATSFT 61

Query: 73  QNNMLPVCHTV----------TSTKCE----SKNRKAV--EISESSNEDSSP-VSEIETN 115
            + +LP  H+V          T+T       +  RK++  ++SES++  S+P VSE   N
Sbjct: 62  TSPVLP-SHSVFPPAPTPSVSTTTHHHFHDINNKRKSMPMDVSESTSGISTPQVSESGFN 120

Query: 116 KRKKNSGRRKRVKGNEKEEEKS-KEVVHVRARRGQATDSHSLAERVRRGKINERLRCLQD 174
             K +SG+ KR+K  EKEEEKS +EVVHVRARRGQATDSHSLAERVRRGKINERLRCL+D
Sbjct: 121 T-KYSSGKGKRLKSLEKEEEKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKD 179

Query: 175 IVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDAVETMQKAKA 234
           IVPGCYKTMGM +MLDEIINYVQSLQNQVEFLSMKL AAS+FYDFNSE+DA+  +Q+AKA
Sbjct: 180 IVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSEADAISKLQRAKA 239

Query: 235 YKAKEMERLMKE--GNFAC 251
           ++AKE+ERLMKE  G  AC
Sbjct: 240 HEAKELERLMKEGYGGIAC 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519201|gb|AFK47662.1| unknown [Lotus japonicus]

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 148/270 (54%), Positives = 189/270 (70%), Gaps = 22/270 (8%)

Query: 1   MADFAQDLQYFRASSSFPFLDIDPNIEQINNNLSV------LDNTSLLNYQSFMPFSNPD 54
           MA+  ++LQ  R S  FPFLDIDP++E ++  + +       ++   +N Q+ MPFS  D
Sbjct: 1   MAEITENLQSIRPS--FPFLDIDPSMELLSQFMGMNPQHVMDNSNMNMNMQNLMPFSC-D 57

Query: 55  NFF-----EFPGNLAENFPG--NFIQNNMLPVCHTVTSTK---CESKNRKAV-EISESSN 103
           +       EFP NL   FPG  + + +N  PV   +   +    E K RK + +I E+S+
Sbjct: 58  SILGPEEPEFPENLEGTFPGLVHHVSHNAFPVSLPIFPAEDEIIEGKKRKMIMDIQETSS 117

Query: 104 EDSSPVSEIETNKRKKNSGRRKRVKGNEKEEEKSKEVVHVRARRGQATDSHSLAERVRRG 163
            +S+P      ++ K NSGR KR K N  EEEK KEVVHVRARRGQATDSHSLAERVRRG
Sbjct: 118 ANSTPAVSESGSRIKNNSGRGKRAKSNVTEEEKEKEVVHVRARRGQATDSHSLAERVRRG 177

Query: 164 KINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSES 223
           KINE+LRCLQ+IVPGCYKTMGM +MLDEIINYVQSLQ+QVEFLS+KLTAAST+YDFNSE+
Sbjct: 178 KINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSET 237

Query: 224 DAVETMQKAKAYKAKEMERLMKE--GNFAC 251
           DA+ETMQ+A+A +AKE+ R  +E  G  +C
Sbjct: 238 DAIETMQRARASEAKELARYKREEYGGISC 267

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
TAIR|locus:2027809	261	BEE3 "AT1G73830" [Arabidopsis	0.420	0.425	0.803	4.7e-48
TAIR|locus:2014144	260	BEE1 "BR enhanced expression 1	0.397	0.403	0.819	2.6e-45
TAIR|locus:2032990	223	CES "AT1G25330" [Arabidopsis t	0.390	0.461	0.673	6.7e-33
TAIR|locus:505006688	286	AT5G50915 "AT5G50915" [Arabido	0.314	0.290	0.714	5.2e-26
TAIR|locus:2079676	456	AT3G07340 "AT3G07340" [Arabido	0.303	0.175	0.725	6.8e-26
TAIR|locus:2028804	390	CIB5 "AT1G26260" [Arabidopsis	0.303	0.205	0.725	2.9e-25
TAIR|locus:2152551	498	AT5G48560 "AT5G48560" [Arabido	0.401	0.212	0.589	1.2e-24
UNIPROTKB|Q5VR96	437	P0038C05.31-1 "Os06g0275600 pr	0.299	0.180	0.721	1.2e-24
UNIPROTKB|Q75M33	339	P0668H12.5 "BHLH transcription	0.382	0.297	0.598	2e-24
UNIPROTKB|Q6Z2G7	361	P0680A05.9 "Putative bHLH tran	0.306	0.224	0.691	3.3e-24

TAIR|locus:2027809 BEE3 "AT1G73830" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
 Identities = 90/112 (80%), Positives = 101/112 (90%)

Query:   144 RARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQV 203
             RARRGQATDSHS+AERVRRGKINERL+CLQDIVPGCYKTMGM  MLDEIINYVQSLQNQV
Sbjct:   148 RARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQV 207

Query:   204 EFLSMKLTAASTFYDFNSESDAVETMQKAKAYKAKEMERLMKEGNFACSSSS 255
             EFLSMKLTAAS++YDFNSE+DAVE+MQKAKA +A EM +  ++G+    SSS
Sbjct:   208 EFLSMKLTAASSYYDFNSETDAVESMQKAKAREAVEMGQ-GRDGSSVFHSSS 258

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2014144 BEE1 "BR enhanced expression 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
 Identities = 86/105 (81%), Positives = 96/105 (91%)

Query:   144 RARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQV 203
             RARRGQATDSHSLAERVRRGKINERLRCLQD+VPGCYK MGM  MLDEIINYVQSLQNQV
Sbjct:   146 RARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQV 205

Query:   204 EFLSMKLTAASTFYDFNSESDAVETMQKAKAYKAKEMERLMKEGN 248
             EFLSMKLTAAS+FYDFNSE+DAV++MQ+AKA +  EM R  ++G+
Sbjct:   206 EFLSMKLTAASSFYDFNSETDAVDSMQRAKARETVEMGRQTRDGS 250

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2032990 CES "AT1G25330" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 70/104 (67%), Positives = 85/104 (81%)

Query:   144 RARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQV 203
             RA+RGQATDSHSLAERVRR KINERL+CLQD+VPGCYK MGM +MLD II+YV+SLQNQ+
Sbjct:   105 RAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQI 164

Query:   204 EFLSMKLTAASTFYDFNS-ESDAVETMQKAKAYKAKEMERLMKE 246
             EFLSMKL+AAS  YD NS + +  +  Q    + A EMER+++E
Sbjct:   165 EFLSMKLSAASACYDLNSLDIEPTDIFQGGNIHSAAEMERILRE 208

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:2000488 "positive regulation of brassinosteroid biosynthetic process" evidence=IMP

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:505006688 AT5G50915 "AT5G50915" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 60/84 (71%), Positives = 69/84 (82%)

Query:   144 RARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQV 203
             RARRGQATDSHSLAERVRR KI+ER+R LQ++VPGC K  G  +MLDEIINYVQ+LQ QV
Sbjct:   137 RARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQV 196

Query:   204 EFLSMKLTAAS-TFYDFNSESDAV 226
             EFLSMKLT+ S   YDF S+ D +
Sbjct:   197 EFLSMKLTSISPVVYDFGSDLDGL 220

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=IEP

TAIR|locus:2079676 AT3G07340 "AT3G07340" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 6.8e-26, P = 6.8e-26
 Identities = 58/80 (72%), Positives = 68/80 (85%)

Query:   144 RARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQV 203
             RARRGQATDSHSLAERVRR KI+ER++ LQD+VPGC K  G  +MLDEIINYVQSLQ QV
Sbjct:   259 RARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQV 318

Query:   204 EFLSMKLTAASTFYDFNSES 223
             EFLSMKL++ +T  DFN ++
Sbjct:   319 EFLSMKLSSVNTRLDFNMDA 338

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2028804 CIB5 "AT1G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 58/80 (72%), Positives = 67/80 (83%)

Query:   144 RARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQV 203
             RARRGQAT+SHSLAERVRR KI+ER++ LQD+VPGC K  G  +MLDEIINYVQSLQ Q+
Sbjct:   224 RARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQI 283

Query:   204 EFLSMKLTAASTFYDFNSES 223
             EFLSMKL+A +   DFN ES
Sbjct:   284 EFLSMKLSAVNPVLDFNLES 303

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0048513 "organ development" evidence=RCA

TAIR|locus:2152551 AT5G48560 "AT5G48560" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 66/112 (58%), Positives = 77/112 (68%)

Query:   144 RARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQV 203
             RARRGQATDSHSLAERVRR KI ER++ LQD+VPGC K  G  +MLDEIINYVQSLQ QV
Sbjct:   302 RARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQV 361

Query:   204 EFLSMKLTAAS-TFYDFNSESDAVETMQKAKAYKAKEMERLMKEGNFACSSS 254
             EFLSMKL++ + T  DFN     V+ +            RL +EG  + SSS
Sbjct:   362 EFLSMKLSSVNDTRLDFN-----VDALVSKDVMIPSSNNRLHEEGLQSKSSS 408

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

UNIPROTKB|Q5VR96 P0038C05.31-1 "Os06g0275600 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 283 (104.7 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 57/79 (72%), Positives = 65/79 (82%)

Query:   144 RARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQV 203
             RARRGQAT+SHSLAERVRR KI+ER++ LQD+VPGC K  G  +MLDEIINYVQSLQ QV
Sbjct:   261 RARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQV 320

Query:   204 EFLSMKLTAASTFYDFNSE 222
             EFLSMKL + +   DFN E
Sbjct:   321 EFLSMKLASVNPTLDFNIE 339

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q75M33 P0668H12.5 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 61/102 (59%), Positives = 72/102 (70%)

Query:   144 RARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQV 203
             RARRGQATDSHSLAERVRR KI+ER++ LQ +VPGC K  G  +MLDEII+YVQSLQNQV
Sbjct:   181 RARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALMLDEIISYVQSLQNQV 240

Query:   204 EFLSMKLTAASTF-YDFNSESDAVETMQKAKAYKAKEMERLM 244
             EFLSMKL + S   Y+F    D    + +  A    EM + M
Sbjct:   241 EFLSMKLASLSPLMYEFGPGIDMHPDVLRQLAKMPHEMVQCM 282

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q6Z2G7 P0680A05.9 "Putative bHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 56/81 (69%), Positives = 65/81 (80%)

Query:   144 RARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQV 203
             RARRGQATDSHSLAERVRR +I+ER+R LQ++VPGC K  G   MLDEIINYVQSLQ QV
Sbjct:   165 RARRGQATDSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQSLQKQV 224

Query:   204 EFLSMKLTAASTFYDFNSESD 224
             EFLSMK+ A++   +FN   D
Sbjct:   225 EFLSMKIAASNPVVNFNIVED 245

GO:0005634 "nucleus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GWK7	BEE3_ARATH	No assigned EC number	0.5444	0.8787	0.8888	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0042007702 hypothetical protein (274 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	264
smart00353	53	smart00353, HLH, helix loop helix domain	2e-08
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	8e-08
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	3e-04

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 155 SLAERVRRGKINERLRCLQDIVPGCYKTMGMT--MMLDEIINYVQSLQNQVE 204
           +  ER RR KINE    L+ ++P   K   ++   +L   I Y++SLQ +++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 47.6 bits (114), Expect = 8e-08
 Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 147 RGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMT--MMLDEIINYVQSLQNQVE 204
           R    ++H+L ER RR +IN+    L+ ++P    +  ++   +L + ++Y++SLQ  ++
Sbjct: 1   RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 37.4 bits (88), Expect = 3e-04
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 153 SHSLAERVRRGKINERLRCLQDIVPGCYKT-MGMTMMLDEIINYVQSLQ 200
           +H+  ER RR +IN+    L++++P      +    +L   I Y++ LQ
Sbjct: 4   AHNERERRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
KOG1318	411	consensus Helix loop helix transcription factor EB	99.46
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.42
smart00353	53	HLH helix loop helix domain.	99.35
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.34
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	99.11
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.34
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	98.32
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.22
KOG0561	373	consensus bHLH transcription factor [Transcription	97.77
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.7
PLN03217	93	transcription factor ATBS1; Provisional	97.25
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.12
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.03
KOG3910	632	consensus Helix loop helix transcription factor [T	96.33
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	87.84
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	85.07

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.46  E-value=1e-13  Score=134.19  Aligned_cols=96  Identities=21%  Similarity=0.367  Sum_probs=80.3

Q ss_pred             CcCCccchHHHhhhhhhhHHHHHhhhcCCCCCc---CCChhchHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCchh
Q 024653          149 QATDSHSLAERVRRGKINERLRCLQDIVPGCYK---TMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDA  225 (264)
Q Consensus       149 ~a~~sHs~aERrRRekIneri~~Lr~LVP~~~K---k~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a~~~~~~~~~~~~~  225 (264)
                      ++++.|+++|||||++||++|++|..|||.|..   +++|.+||..+.+||+.||+..+...+..          ...+.
T Consensus       232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~----------~rqk~  301 (411)
T KOG1318|consen  232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELE----------NRQKK  301 (411)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHH----------hhhhH
Confidence            445689999999999999999999999999942   26899999999999999999888665333          34667


Q ss_pred             HHHHHHHhhhhhHHHHHHHHhcCCccccC
Q 024653          226 VETMQKAKAYKAKEMERLMKEGNFACSSS  254 (264)
Q Consensus       226 ~e~~q~a~~~~~~e~e~~~r~~gl~~~~~  254 (264)
                      ++...+.++.+++|++..++.+|+.+-.+
T Consensus       302 le~~n~~L~~rieeLk~~~~~~~~~~~~~  330 (411)
T KOG1318|consen  302 LESTNQELALRIEELKSEAGRHGLQVEPS  330 (411)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            77778889999999999999998865444

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.42  E-value=1.4e-13  Score=97.09  Aligned_cols=54  Identities=30%  Similarity=0.578  Sum_probs=49.2

Q ss_pred             CCccchHHHhhhhhhhHHHHHhhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHH
Q 024653          151 TDSHSLAERVRRGKINERLRCLQDIVPGC--YKTMGMTMMLDEIINYVQSLQNQVE  204 (264)
Q Consensus       151 ~~sHs~aERrRRekIneri~~Lr~LVP~~--~Kk~dKAsIL~eAI~YIK~LQ~QV~  204 (264)
                      ...|+..||+||++||+.|..|+.+||++  ..++||++||+.||+||+.|+.+++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            34799999999999999999999999999  3458999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.35  E-value=1.3e-12  Score=90.88  Aligned_cols=50  Identities=34%  Similarity=0.529  Sum_probs=44.8

Q ss_pred             chHHHhhhhhhhHHHHHhhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHH
Q 024653          155 SLAERVRRGKINERLRCLQDIVPGC--YKTMGMTMMLDEIINYVQSLQNQVE  204 (264)
Q Consensus       155 s~aERrRRekIneri~~Lr~LVP~~--~Kk~dKAsIL~eAI~YIK~LQ~QV~  204 (264)
                      +..||+||++||+.|..|+.+||.+  ..+++|++||++||+||+.|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999964  2337999999999999999999886

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.34  E-value=1.1e-12  Score=92.72  Aligned_cols=49  Identities=31%  Similarity=0.664  Sum_probs=45.2

Q ss_pred             CccchHHHhhhhhhhHHHHHhhhcCCCC----CcCCChhchHHHHHHHHHHHH
Q 024653          152 DSHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMTMMLDEIINYVQSLQ  200 (264)
Q Consensus       152 ~sHs~aERrRRekIneri~~Lr~LVP~~----~Kk~dKAsIL~eAI~YIK~LQ  200 (264)
                      ..|+..||+||++||+.|..|+.+||.+    ..+++|++||+.||+||+.||
T Consensus         3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            3699999999999999999999999998    344899999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=99.11  E-value=3.7e-11  Score=107.16  Aligned_cols=85  Identities=24%  Similarity=0.355  Sum_probs=65.8

Q ss_pred             ccchHHHhhhhhhhHHHHHhhhcCCCCCcC------CChhchHHHHHHHHHHHHHHHHHHHhhhhhcc-cccccCCCchh
Q 024653          153 SHSLAERVRRGKINERLRCLQDIVPGCYKT------MGMTMMLDEIINYVQSLQNQVEFLSMKLTAAS-TFYDFNSESDA  225 (264)
Q Consensus       153 sHs~aERrRRekIneri~~Lr~LVP~~~Kk------~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a~~-~~~~~~~~~~~  225 (264)
                      .|..+||+||+.|+..+..|+.|||.|...      +.||.||..+|+||.+|..++.+-+.++.++. ..-.+..-...
T Consensus        65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iIk~~  144 (229)
T KOG1319|consen   65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIIKVN  144 (229)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999976532      57999999999999999998888887776654 22233333456


Q ss_pred             HHHHHHHhhhhh
Q 024653          226 VETMQKAKAYKA  237 (264)
Q Consensus       226 ~e~~q~a~~~~~  237 (264)
                      +|.|..+..+.+
T Consensus       145 YEqM~~~~qdnp  156 (229)
T KOG1319|consen  145 YEQMVKAHQDNP  156 (229)
T ss_pred             HHHHHHhcccCC
Confidence            666666555444

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.34  E-value=1.6e-07  Score=86.37  Aligned_cols=53  Identities=28%  Similarity=0.451  Sum_probs=46.8

Q ss_pred             ccchHHHhhhhhhhHHHHHhhhcCCCCCcC-------CChhchHHHHHHHHHHHHHHHHH
Q 024653          153 SHSLAERVRRGKINERLRCLQDIVPGCYKT-------MGMTMMLDEIINYVQSLQNQVEF  205 (264)
Q Consensus       153 sHs~aERrRRekIneri~~Lr~LVP~~~Kk-------~dKAsIL~eAI~YIK~LQ~QV~~  205 (264)
                      .|-+.||+||.|||+-|..|++|||.+-++       ++||.||+-+++|++.||.+...
T Consensus        35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~   94 (250)
T KOG4304|consen   35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA   94 (250)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence            578999999999999999999999965443       68999999999999999986554

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=98.32  E-value=4.6e-07  Score=95.35  Aligned_cols=65  Identities=26%  Similarity=0.509  Sum_probs=58.4

Q ss_pred             CCcCCccchHHHhhhhhhhHHHHHhhhcCCCCCcCCChhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 024653          148 GQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTA  212 (264)
Q Consensus       148 g~a~~sHs~aERrRRekIneri~~Lr~LVP~~~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a  212 (264)
                      |..+.+||++|||.|-.|||||..|+++|||..-++.|..+|..||+||++||..-+.+....+.
T Consensus       274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~  338 (953)
T KOG2588|consen  274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENAS  338 (953)
T ss_pred             CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhh
Confidence            46678999999999999999999999999998877899999999999999999988877655444

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.22  E-value=1e-06  Score=91.96  Aligned_cols=52  Identities=19%  Similarity=0.328  Sum_probs=48.5

Q ss_pred             CCccchHHHhhhhhhhHHHHHhhhcCCCCC---cCCChhchHHHHHHHHHHHHHH
Q 024653          151 TDSHSLAERVRRGKINERLRCLQDIVPGCY---KTMGMTMMLDEIINYVQSLQNQ  202 (264)
Q Consensus       151 ~~sHs~aERrRRekIneri~~Lr~LVP~~~---Kk~dKAsIL~eAI~YIK~LQ~Q  202 (264)
                      +++|+.+|||||+++|.-|.+|.+|||.|.   .|+||-+||.+||+.||.++.+
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            458999999999999999999999999998   6689999999999999998875

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.77  E-value=1.6e-05  Score=75.79  Aligned_cols=51  Identities=22%  Similarity=0.387  Sum_probs=44.4

Q ss_pred             ccchHHHhhhhhhhHHHHHhhhcCCC--CCcCCChhchHHHHHHHHHHHHHHHH
Q 024653          153 SHSLAERVRRGKINERLRCLQDIVPG--CYKTMGMTMMLDEIINYVQSLQNQVE  204 (264)
Q Consensus       153 sHs~aERrRRekIneri~~Lr~LVP~--~~Kk~dKAsIL~eAI~YIK~LQ~QV~  204 (264)
                      --+-.||||=.-||-.|..||.|+|.  +.| +.||.||+.+.+||..|..+.-
T Consensus        63 IANsNERRRMQSINAGFqsLr~LlPr~eGEK-LSKAAILQQTa~yI~~Le~~Kt  115 (373)
T KOG0561|consen   63 IANSNERRRMQSINAGFQSLRALLPRKEGEK-LSKAAILQQTADYIHQLEGHKT  115 (373)
T ss_pred             hhcchHHHHHHhhhHHHHHHHHhcCcccchh-hHHHHHHHHHHHHHHHHHhccc
Confidence            34567999999999999999999996  445 7999999999999999987543

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.70  E-value=6.5e-05  Score=68.80  Aligned_cols=58  Identities=22%  Similarity=0.316  Sum_probs=48.7

Q ss_pred             CccchHHHhhhhhhhHHHHHhhhcCCCCCcCC--ChhchHHHHHHHHHHHHHHHHHHHhh
Q 024653          152 DSHSLAERVRRGKINERLRCLQDIVPGCYKTM--GMTMMLDEIINYVQSLQNQVEFLSMK  209 (264)
Q Consensus       152 ~sHs~aERrRRekIneri~~Lr~LVP~~~Kk~--dKAsIL~eAI~YIK~LQ~QV~~Ls~~  209 (264)
                      ..|+.-||+||..|.+.|..|+.+||......  +.++||+.|+.||+.|+.+.......
T Consensus        61 ~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~  120 (232)
T KOG2483|consen   61 AHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQD  120 (232)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHH
Confidence            46999999999999999999999999755322  25899999999999999877665533

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.25  E-value=0.00061  Score=54.55  Aligned_cols=53  Identities=26%  Similarity=0.463  Sum_probs=44.6

Q ss_pred             hhhhhhhHHHHHhhhcCCCC------CcCCChhchHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024653          160 VRRGKINERLRCLQDIVPGC------YKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAA  213 (264)
Q Consensus       160 rRRekIneri~~Lr~LVP~~------~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a~  213 (264)
                      ---+.|+|-+..||+|+|..      .+ ...+-||+|+-.||+.|+.+|..|++.|..+
T Consensus        17 isddqi~dLvsKLq~llPe~r~~r~s~k-~saskvLqEtC~YIrsLhrEvDdLSerLs~L   75 (93)
T PLN03217         17 ISEDQINDLIIKLQQLLPELRDSRRSDK-VSAARVLQDTCNYIRNLHREVDDLSERLSEL   75 (93)
T ss_pred             CCHHHHHHHHHHHHHHChHHHhhhcccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33468999999999999953      33 4678899999999999999999999887654

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.12  E-value=0.00048  Score=61.67  Aligned_cols=58  Identities=19%  Similarity=0.249  Sum_probs=50.4

Q ss_pred             ccchHHHhhhhhhhHHHHHhhhcCCC--C-CcCCChhchHHHHHHHHHHHHHHHHHHHhhh
Q 024653          153 SHSLAERVRRGKINERLRCLQDIVPG--C-YKTMGMTMMLDEIINYVQSLQNQVEFLSMKL  210 (264)
Q Consensus       153 sHs~aERrRRekIneri~~Lr~LVP~--~-~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l  210 (264)
                      .++..||.|=.-+|..|..||.+||.  . +|++.|..+|..||.||++|+.-++.-+..+
T Consensus       112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            46777999999999999999999995  3 6678999999999999999999887765443

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.03  E-value=0.00098  Score=62.31  Aligned_cols=56  Identities=21%  Similarity=0.301  Sum_probs=47.9

Q ss_pred             ccchHHHhhhhhhhHHHHHhhh-cCCCCCcCCChhchHHHHHHHHHHHHHHHHHHHh
Q 024653          153 SHSLAERVRRGKINERLRCLQD-IVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSM  208 (264)
Q Consensus       153 sHs~aERrRRekIneri~~Lr~-LVP~~~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~  208 (264)
                      +-.+-||||=.|+||-|.+|+. -+++.+..+-|..||..||+||..||.=++++..
T Consensus       121 AATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~  177 (284)
T KOG3960|consen  121 AATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQ  177 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3457899999999999999964 5667666678999999999999999998887763

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=96.33  E-value=0.0064  Score=61.53  Aligned_cols=56  Identities=23%  Similarity=0.230  Sum_probs=47.2

Q ss_pred             CccchHHHhhhhhhhHHHHHhhhcCCC---CCcCCChhchHHHHHHHHHHHHHHHHHHH
Q 024653          152 DSHSLAERVRRGKINERLRCLQDIVPG---CYKTMGMTMMLDEIINYVQSLQNQVEFLS  207 (264)
Q Consensus       152 ~sHs~aERrRRekIneri~~Lr~LVP~---~~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls  207 (264)
                      ...+..||.|=..|||.|++|.++.--   ..|.--|-.||..||.-|-.|++||.+-.
T Consensus       528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN  586 (632)
T KOG3910|consen  528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN  586 (632)
T ss_pred             hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence            357889999999999999999998652   33334588999999999999999999754

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=87.84  E-value=0.27  Score=43.43  Aligned_cols=48  Identities=25%  Similarity=0.376  Sum_probs=42.1

Q ss_pred             ccchHHHhhhhhhhHHHHHhhhcCCC--CCcCCChhchHHHHHHHHHHHHH
Q 024653          153 SHSLAERVRRGKINERLRCLQDIVPG--CYKTMGMTMMLDEIINYVQSLQN  201 (264)
Q Consensus       153 sHs~aERrRRekIneri~~Lr~LVP~--~~Kk~dKAsIL~eAI~YIK~LQ~  201 (264)
                      -|++-||+|-..+|+.|.+||.++|.  .+| ..|---|.-|-.||-+|=.
T Consensus        81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdk-lSkiqtLklA~ryidfl~~  130 (173)
T KOG4447|consen   81 MANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFLYQ  130 (173)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhcCCCCccc-cccccchhhcccCCchhhh
Confidence            49999999999999999999999995  456 5888889999999988854

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=85.07  E-value=0.78  Score=48.44  Aligned_cols=43  Identities=26%  Similarity=0.324  Sum_probs=36.8

Q ss_pred             chHHHhhhhhhhHHHHHhhhcCCCCCc---CCChhchHHHHHHHHH
Q 024653          155 SLAERVRRGKINERLRCLQDIVPGCYK---TMGMTMMLDEIINYVQ  197 (264)
Q Consensus       155 s~aERrRRekIneri~~Lr~LVP~~~K---k~dKAsIL~eAI~YIK  197 (264)
                      .-|.|.||.|=|+-|.+|..+||-...   .+|||+|+.-||-|+|
T Consensus        51 RdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR   96 (768)
T KOG3558|consen   51 RDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR   96 (768)
T ss_pred             hhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence            346899999999999999999994332   2799999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	5e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	3e-07
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	4e-05
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	2e-04
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	2e-04

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 67.4 bits (165), Expect = 5e-15
 Identities = 17/67 (25%), Positives = 37/67 (55%)

Query: 146 RRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEF 205
            RG+   +H+  E+  R  IN+++  L+D+V G    +  + +L + I+Y++ LQ+  + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 206 LSMKLTA 212
           L  +  +
Sbjct: 62  LKQENLS 68

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 2e-07
 Identities = 41/278 (14%), Positives = 83/278 (29%), Gaps = 81/278 (29%)

Query: 48  MPFSNPDNFFEFPGNLAENFPGNFIQNNMLPVCHTVTSTKCESKNRKAVEISESSNEDSS 107
             +   D    F     +NF    +Q+    +   ++  + +        I  S +  S 
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI---LSKEEID-------HIIMSKDAVSG 63

Query: 108 PVSEIETNKRKKNSGRRKRVKGNE-----------KEEEKSKE---VVHVRARRGQATDS 153
            +    T   K+    +K V+              K E++       +++  R     D+
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 154 HSLAER-VRRGKINERLR-CLQDIVP----------GCYKT------------------- 182
              A+  V R +   +LR  L ++ P          G  KT                   
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 183 -----MGMTMMLDEIINYVQSLQNQVE--FLSMKLTAASTFYDFNSESDAVETMQKAKAY 235
                +      + ++  +Q L  Q++  + S    +++     +S    +  + K+K Y
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 236 K-----------AKEMERLMKEGNFACSSSSSFLTITR 262
           +           AK         N +C      L  TR
Sbjct: 244 ENCLLVLLNVQNAKAWNAF----NLSCKI----LLTTR 273

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 152 DSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMT-----MMLDEIINYVQSLQNQVE 204
             H+  ER RR KIN  +  L  I+P        +      +L +  +Y+Q L+    
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 152 DSHSLAERVRRGKINERLRCLQDIVPGCYKT-MGMTMMLDEIINYVQSLQNQ 202
             H+  ER RR  I +    L+D VP           +LD+   Y+Q ++ +
Sbjct: 4   AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 55

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 152 DSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMT--MMLDEIINYVQSLQNQVEFLSMK 209
             H+  ER RR  I +    L+D VP   +    +   +LD+   Y+Q ++ +       
Sbjct: 14  AHHNALERKRRDHIKDSFHSLRDSVPSL-QGEKASRAQILDKATEYIQYMRRKNHTHQQD 72

Query: 210 L 210
           +
Sbjct: 73  I 73

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 153 SHSLAERVRRGKINERLRCLQDIVPGCYKTMGMT--MMLDEIINYVQSLQNQVE 204
           +H++ ER RR ++      L+D +P           ++L +   Y+ S+Q + +
Sbjct: 9   THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.81
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.69
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.6
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.58
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.57
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.52
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.49
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.48
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.44
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.4
4ath_A	83	MITF, microphthalmia-associated transcription fact	99.39
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.26
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.05
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.99
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.93
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.9
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.5
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.86

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.81  E-value=1.8e-20  Score=152.29  Aligned_cols=99  Identities=21%  Similarity=0.325  Sum_probs=52.0

Q ss_pred             hhhhhhccCCcCCccchHHHhhhhhhhHHHHHhhhcCCCCCc---CCChhchHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 024653          140 VVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYK---TMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTF  216 (264)
Q Consensus       140 ~~~~Rarrg~a~~sHs~aERrRRekIneri~~Lr~LVP~~~K---k~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a~~~~  216 (264)
                      .....+++++++.+|+++||+||++||++|.+|++|||+|.+   +++|++||++||+||++||.+++.|....      
T Consensus        17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~------   90 (118)
T 4ati_A           17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE------   90 (118)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            344567777788899999999999999999999999999853   47899999999999999999999998543      


Q ss_pred             cccCCCchhHHHHHHHhhhhhHHHHHHHHhcC
Q 024653          217 YDFNSESDAVETMQKAKAYKAKEMERLMKEGN  248 (264)
Q Consensus       217 ~~~~~~~~~~e~~q~a~~~~~~e~e~~~r~~g  248 (264)
                          .+.+.++..+..+...++|+|++++.||
T Consensus        91 ----~~~~~l~~~n~~L~~riqeLE~~a~~~g  118 (118)
T 4ati_A           91 ----NRQKKLEHANRHLLLRVQELEMQARAHG  118 (118)
T ss_dssp             ----C---------------------------
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                3345667778888889999999999887

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.69  E-value=7.3e-18  Score=128.88  Aligned_cols=63  Identities=24%  Similarity=0.372  Sum_probs=57.8

Q ss_pred             CCccchHHHhhhhhhhHHHHHhhhcCCCCCcCCChhchHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024653          151 TDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAA  213 (264)
Q Consensus       151 ~~sHs~aERrRRekIneri~~Lr~LVP~~~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a~  213 (264)
                      +.+|+++||+||++||++|.+|++|||+++.++||++||++||+||++||.+++.|+.+..++
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L   69 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL   69 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357999999999999999999999999996568999999999999999999999999777653

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.60  E-value=2.6e-16  Score=118.70  Aligned_cols=57  Identities=21%  Similarity=0.411  Sum_probs=52.2

Q ss_pred             CCccchHHHhhhhhhhHHHHHhhhcCCCCCcCCChhchHHHHHHHHHHHHHHHHHHH
Q 024653          151 TDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLS  207 (264)
Q Consensus       151 ~~sHs~aERrRRekIneri~~Lr~LVP~~~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls  207 (264)
                      +.+|+++||+||++||++|.+|+.|||++..++||++||+.||+||+.||.++.-|+
T Consensus         9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B            9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            347999999999999999999999999876558999999999999999999988764

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.58  E-value=3.9e-16  Score=114.57  Aligned_cols=54  Identities=24%  Similarity=0.433  Sum_probs=48.3

Q ss_pred             CCccchHHHhhhhhhhHHHHHhhhcCCCCCc------CCChhchHHHHHHHHHHHHHHHH
Q 024653          151 TDSHSLAERVRRGKINERLRCLQDIVPGCYK------TMGMTMMLDEIINYVQSLQNQVE  204 (264)
Q Consensus       151 ~~sHs~aERrRRekIneri~~Lr~LVP~~~K------k~dKAsIL~eAI~YIK~LQ~QV~  204 (264)
                      +.+|+++||+||++||+.|..|+.|||+|.+      +++||+||+.||+||+.||++|+
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            4689999999999999999999999997633      35799999999999999998764

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.57  E-value=5.1e-16  Score=113.16  Aligned_cols=56  Identities=27%  Similarity=0.383  Sum_probs=50.3

Q ss_pred             CcCCccchHHHhhhhhhhHHHHHhhhcCCCCCc-----CCChhchHHHHHHHHHHHHHHHH
Q 024653          149 QATDSHSLAERVRRGKINERLRCLQDIVPGCYK-----TMGMTMMLDEIINYVQSLQNQVE  204 (264)
Q Consensus       149 ~a~~sHs~aERrRRekIneri~~Lr~LVP~~~K-----k~dKAsIL~eAI~YIK~LQ~QV~  204 (264)
                      ....+|+++||+||++||+.|..|+.|||+|..     +++|++||++||+||+.||.+++
T Consensus         4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            445689999999999999999999999999872     37999999999999999998753

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.52  E-value=1.1e-15  Score=115.53  Aligned_cols=52  Identities=27%  Similarity=0.486  Sum_probs=46.8

Q ss_pred             cCCccchHHHhhhhhhhHHHHHhhhcCCCCC---cCCChhchHHHHHHHHHHHHH
Q 024653          150 ATDSHSLAERVRRGKINERLRCLQDIVPGCY---KTMGMTMMLDEIINYVQSLQN  201 (264)
Q Consensus       150 a~~sHs~aERrRRekIneri~~Lr~LVP~~~---Kk~dKAsIL~eAI~YIK~LQ~  201 (264)
                      ++.+|+++||+||++||+.|.+|+.|||.|.   .++|||+||+.||+||+.||.
T Consensus         9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            3458999999999999999999999999883   338999999999999999974

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.49  E-value=2.1e-14  Score=108.70  Aligned_cols=61  Identities=23%  Similarity=0.396  Sum_probs=55.7

Q ss_pred             CccchHHHhhhhhhhHHHHHhhhcCCCCC-cCCChhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 024653          152 DSHSLAERVRRGKINERLRCLQDIVPGCY-KTMGMTMMLDEIINYVQSLQNQVEFLSMKLTA  212 (264)
Q Consensus       152 ~sHs~aERrRRekIneri~~Lr~LVP~~~-Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a  212 (264)
                      ..|+.+||+||..||+.|..|+.+||.+. .+++|++||..||+||+.||.+++.|+.++..
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~   75 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD   75 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999873 23799999999999999999999999987765

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.48  E-value=2.6e-14  Score=108.59  Aligned_cols=60  Identities=25%  Similarity=0.407  Sum_probs=54.3

Q ss_pred             CccchHHHhhhhhhhHHHHHhhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 024653          152 DSHSLAERVRRGKINERLRCLQDIVPGC--YKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTA  212 (264)
Q Consensus       152 ~sHs~aERrRRekIneri~~Lr~LVP~~--~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a  212 (264)
                      ..|+..||+||++||+.|..|+++||.+  .| ++|++||..||+||+.|+.+++.|+.++..
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~   65 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDD   65 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999985  45 799999999999999999999999865543

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.44  E-value=8.3e-14  Score=107.95  Aligned_cols=59  Identities=22%  Similarity=0.356  Sum_probs=53.3

Q ss_pred             ccchHHHhhhhhhhHHHHHhhhcCCCCC--cCCChhchHHHHHHHHHHHHHHHHHHHhhhh
Q 024653          153 SHSLAERVRRGKINERLRCLQDIVPGCY--KTMGMTMMLDEIINYVQSLQNQVEFLSMKLT  211 (264)
Q Consensus       153 sHs~aERrRRekIneri~~Lr~LVP~~~--Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~  211 (264)
                      .|+..||+||++||+.|..|+++||.+.  .+++|++||..||+||++|+.+.+.+.....
T Consensus         9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~   69 (88)
T 1nkp_A            9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED   69 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999863  3479999999999999999999998876543

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.40  E-value=9.8e-14  Score=105.41  Aligned_cols=56  Identities=27%  Similarity=0.330  Sum_probs=48.9

Q ss_pred             CccchHHHhhhhhhhHHHHHhhhcCCC---CCcCCChhchHHHHHHHHHHHHHHHHHHH
Q 024653          152 DSHSLAERVRRGKINERLRCLQDIVPG---CYKTMGMTMMLDEIINYVQSLQNQVEFLS  207 (264)
Q Consensus       152 ~sHs~aERrRRekIneri~~Lr~LVP~---~~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls  207 (264)
                      ..|+..||+||+.||+.|..|+.+||.   +.|..+|+.||..||+||++||.+|++++
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~   65 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN   65 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            479999999999999999999999995   34534688999999999999999999875

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=99.39  E-value=1.1e-12  Score=101.84  Aligned_cols=78  Identities=17%  Similarity=0.273  Sum_probs=67.8

Q ss_pred             hhhhhhHHHHHhhhcCCCCCc---CCChhchHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCchhHHHHHHHhhhhh
Q 024653          161 RRGKINERLRCLQDIVPGCYK---TMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDAVETMQKAKAYKA  237 (264)
Q Consensus       161 RRekIneri~~Lr~LVP~~~K---k~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a~~~~~~~~~~~~~~e~~q~a~~~~~  237 (264)
                      -|..||++|.+|..|||.+..   +++|++||..||+||++||..++.+.....          ....++..++....++
T Consensus         3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~----------r~k~le~~n~~l~~ri   72 (83)
T 4ath_A            3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN----------RQKKLEHANRHLLLRV   72 (83)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred             chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhhhHHHHHHH
Confidence            488999999999999998642   369999999999999999999988875543          3677889999999999


Q ss_pred             HHHHHHHHhcC
Q 024653          238 KEMERLMKEGN  248 (264)
Q Consensus       238 ~e~e~~~r~~g  248 (264)
                      +|+|++|+.||
T Consensus        73 qELE~qa~~hg   83 (83)
T 4ath_A           73 QELEMQARAHG   83 (83)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHcC
Confidence            99999999987

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.26  E-value=7.5e-12  Score=95.62  Aligned_cols=59  Identities=17%  Similarity=0.188  Sum_probs=52.5

Q ss_pred             ccchHHHhhhhhhhHHHHHhhhcCCCCC--cCCChhchHHHHHHHHHHHHHHHHHHHhhhh
Q 024653          153 SHSLAERVRRGKINERLRCLQDIVPGCY--KTMGMTMMLDEIINYVQSLQNQVEFLSMKLT  211 (264)
Q Consensus       153 sHs~aERrRRekIneri~~Lr~LVP~~~--Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~  211 (264)
                      .|+..||+||..||+.|..|+++||.+.  .+++|+.||..||+||+.|+.+.+.|..+..
T Consensus         4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~   64 (80)
T 1nlw_A            4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQID   64 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999652  2368999999999999999999998876543

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.05  E-value=1.3e-10  Score=106.29  Aligned_cols=55  Identities=20%  Similarity=0.387  Sum_probs=42.6

Q ss_pred             CcCCccchHHHhhhhhhhHHHHHhhhcCCCCCcCCChhchHHHHHHHHHHHHHHH
Q 024653          149 QATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQV  203 (264)
Q Consensus       149 ~a~~sHs~aERrRRekIneri~~Lr~LVP~~~Kk~dKAsIL~eAI~YIK~LQ~QV  203 (264)
                      ..+.+|+++||+||++||+.|.+|+.|||....++||++||..||+|||.|+...
T Consensus        11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            3445799999999999999999999999955444899999999999999998653

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.99  E-value=2.5e-10  Score=85.02  Aligned_cols=52  Identities=23%  Similarity=0.379  Sum_probs=47.0

Q ss_pred             ccchHHHhhhhhhhHHHHHhhhcCCCC-CcCCChhchHHHHHHHHHHHHHHHH
Q 024653          153 SHSLAERVRRGKINERLRCLQDIVPGC-YKTMGMTMMLDEIINYVQSLQNQVE  204 (264)
Q Consensus       153 sHs~aERrRRekIneri~~Lr~LVP~~-~Kk~dKAsIL~eAI~YIK~LQ~QV~  204 (264)
                      .|+..||+|+..||+.|..|+++||.. +++++|..||..||+||.+||..++
T Consensus        15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            599999999999999999999999964 3458999999999999999998653

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.93  E-value=8.4e-10  Score=80.28  Aligned_cols=52  Identities=23%  Similarity=0.292  Sum_probs=47.1

Q ss_pred             ccchHHHhhhhhhhHHHHHhhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHH
Q 024653          153 SHSLAERVRRGKINERLRCLQDIVPGC--YKTMGMTMMLDEIINYVQSLQNQVE  204 (264)
Q Consensus       153 sHs~aERrRRekIneri~~Lr~LVP~~--~Kk~dKAsIL~eAI~YIK~LQ~QV~  204 (264)
                      .|+.-||+|+..||+.|..|+.+||..  +++++|..+|..||+||..||..++
T Consensus         5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            488999999999999999999999964  4568999999999999999998764

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.90  E-value=3.8e-10  Score=104.54  Aligned_cols=54  Identities=26%  Similarity=0.394  Sum_probs=47.5

Q ss_pred             CCcCCccchHHHhhhhhhhHHHHHhhhcCCC----CCcCCChhchHHHHHHHHHHHHHH
Q 024653          148 GQATDSHSLAERVRRGKINERLRCLQDIVPG----CYKTMGMTMMLDEIINYVQSLQNQ  202 (264)
Q Consensus       148 g~a~~sHs~aERrRRekIneri~~Lr~LVP~----~~Kk~dKAsIL~eAI~YIK~LQ~Q  202 (264)
                      ++++++|+.+||+||++||+.|.+|+.|||.    ..| +||++||..||+|||.|+..
T Consensus        11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHCC
T ss_pred             hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhcc
Confidence            3345689999999999999999999999994    456 79999999999999999853

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.50  E-value=6.5e-08  Score=72.57  Aligned_cols=47  Identities=21%  Similarity=0.350  Sum_probs=41.5

Q ss_pred             chHHHhhhhhhhHHHHHhhhcCCCC--CcCCChhchHHHHHHHHHHHHH
Q 024653          155 SLAERVRRGKINERLRCLQDIVPGC--YKTMGMTMMLDEIINYVQSLQN  201 (264)
Q Consensus       155 s~aERrRRekIneri~~Lr~LVP~~--~Kk~dKAsIL~eAI~YIK~LQ~  201 (264)
                      +.-||+|...||+.|..||.+||..  +++++|..+|.-||+||..||.
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            3458999999999999999999964  4558999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.86  E-value=2e-05  Score=62.59  Aligned_cols=49  Identities=20%  Similarity=0.305  Sum_probs=42.8

Q ss_pred             HHhhhhhhhHHHHHhhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHHHH
Q 024653          158 ERVRRGKINERLRCLQDIVPGC--YKTMGMTMMLDEIINYVQSLQNQVEFL  206 (264)
Q Consensus       158 ERrRRekIneri~~Lr~LVP~~--~Kk~dKAsIL~eAI~YIK~LQ~QV~~L  206 (264)
                      ||.|=..||+.|..||.+||..  ++++.|..+|.-||+||..||..++.-
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~   83 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH   83 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            4677788999999999999964  556899999999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	264
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	3e-12
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	8e-12
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	1e-11
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	2e-11
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	7e-09
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	3e-08
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	3e-08
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	1e-07

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (141), Expect = 3e-12
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 162 RGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTA 212
           R  IN+++  L+D+V G    M  + +L + I+Y++ LQ     L  +   
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMV 51

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 8e-12
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 142 HVRARRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTM--MLDEIINYVQSL 199
           H+  +R     +H++ ER RR ++      L+D +P            +L +   Y+ S+
Sbjct: 2   HMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

Query: 200 QNQVEFLSMKL 210
           Q + + L  + 
Sbjct: 58  QAEEQKLISEE 68

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (137), Expect = 1e-11
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 152 DSHSLAERVRRGKINERLRCLQDIVPGCYKT------MGMTMMLDEIINYVQSLQNQVE 204
           +SH  AE+ RR ++   L  L  ++P  +K             ++    Y++ LQ    
Sbjct: 4   ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 17/67 (25%), Positives = 37/67 (55%)

Query: 146 RRGQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEF 205
            RG+   +H+  E+  R  IN+++  L+D+V G    +  + +L + I+Y++ LQ+  + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 206 LSMKLTA 212
           L  +  +
Sbjct: 62  LKQENLS 68

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.1 bits (117), Expect = 7e-09
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 153 SHSLAERVRRGKINERLRCLQDIVPGCY-KTMGMTMMLDEIINYVQSLQNQVE 204
           + ++ ER R  K+NE    L+        + +    +L   I Y++ LQ  + 
Sbjct: 15  AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 3e-08
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 152 DSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMT-----MMLDEIINYVQSLQNQVE 204
             H+  ER RR KIN  +  L  I+P        +      +L +  +Y+Q L+    
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 153 SHSLAERVRRGKINERLRCLQDIVPGCYKT-MGMTMMLDEIINYVQSLQNQVEFLSMKL 210
            H+  ER RR  I +    L+D VP           +LD+   Y+Q ++ +       +
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 153 SHSLAERVRRGKINERLRCLQDIVPGCYKTMGMT--MMLDEIINYVQSLQNQVEFLSMKL 210
           +H+  E+ RR  +   L  L+ +VP    +   T   +L +   +++ L++       ++
Sbjct: 4   THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.52
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.49
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.44
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.4

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.2e-16  Score=119.33  Aligned_cols=61  Identities=25%  Similarity=0.392  Sum_probs=56.9

Q ss_pred             CccchHHHhhhhhhhHHHHHhhhcCCCCCcCCChhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 024653          152 DSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTA  212 (264)
Q Consensus       152 ~sHs~aERrRRekIneri~~Lr~LVP~~~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a  212 (264)
                      ..|+.+||+||++||+.|..|++|||++..+++|++||..||+||+.|+.+++.|..+...
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~   68 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLS   68 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999998877899999999999999999999999876654

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=2.7e-15  Score=107.51  Aligned_cols=52  Identities=23%  Similarity=0.388  Sum_probs=47.1

Q ss_pred             CccchHHHhhhhhhhHHHHHhhhcCCCC------CcCCChhchHHHHHHHHHHHHHHH
Q 024653          152 DSHSLAERVRRGKINERLRCLQDIVPGC------YKTMGMTMMLDEIINYVQSLQNQV  203 (264)
Q Consensus       152 ~sHs~aERrRRekIneri~~Lr~LVP~~------~Kk~dKAsIL~eAI~YIK~LQ~QV  203 (264)
                      ..|+++||+||++||+.|..|+.|||++      +.+++|+.||+.||+||+.||++|
T Consensus         4 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            4799999999999999999999999953      334799999999999999999876

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.2e-15  Score=106.15  Aligned_cols=52  Identities=27%  Similarity=0.353  Sum_probs=48.1

Q ss_pred             hhhhhHHHHHhhhcCCCCCcCCChhchHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024653          162 RGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAA  213 (264)
Q Consensus       162 RekIneri~~Lr~LVP~~~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a~  213 (264)
                      |++||++|.+|++|||++.+++|||+||.+||+||++||.|++.|+++....
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L   52 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVL   52 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999998668999999999999999999999999877653

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=3.8e-15  Score=108.56  Aligned_cols=52  Identities=23%  Similarity=0.368  Sum_probs=48.1

Q ss_pred             ccchHHHhhhhhhhHHHHHhhhcCCCCC-cCCChhchHHHHHHHHHHHHHHHH
Q 024653          153 SHSLAERVRRGKINERLRCLQDIVPGCY-KTMGMTMMLDEIINYVQSLQNQVE  204 (264)
Q Consensus       153 sHs~aERrRRekIneri~~Lr~LVP~~~-Kk~dKAsIL~eAI~YIK~LQ~QV~  204 (264)
                      .|+..||+||++||+.|..|+.|||++. ++++|++||+.||+||++||++|+
T Consensus        15 ~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            6999999999999999999999999875 447999999999999999998775

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.9e-14  Score=106.45  Aligned_cols=61  Identities=16%  Similarity=0.184  Sum_probs=54.3

Q ss_pred             CccchHHHhhhhhhhHHHHHhhhcCCCCC--cCCChhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 024653          152 DSHSLAERVRRGKINERLRCLQDIVPGCY--KTMGMTMMLDEIINYVQSLQNQVEFLSMKLTA  212 (264)
Q Consensus       152 ~sHs~aERrRRekIneri~~Lr~LVP~~~--Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a  212 (264)
                      ..|+.+||+||++||+.|..|++|||++.  .+++|++||..||+||+.|+.+++.+..+...
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~   65 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ   65 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999753  23799999999999999999999999866543

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.6e-14  Score=106.63  Aligned_cols=60  Identities=23%  Similarity=0.404  Sum_probs=54.0

Q ss_pred             CccchHHHhhhhhhhHHHHHhhhcCCCCC-cCCChhchHHHHHHHHHHHHHHHHHHHhhhh
Q 024653          152 DSHSLAERVRRGKINERLRCLQDIVPGCY-KTMGMTMMLDEIINYVQSLQNQVEFLSMKLT  211 (264)
Q Consensus       152 ~sHs~aERrRRekIneri~~Lr~LVP~~~-Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~  211 (264)
                      ..|+.+||+||++||+.|..|++|||++. ++++|++||..||+||+.|+.++..|..++.
T Consensus         4 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~   64 (83)
T d1nkpb_           4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID   64 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999999753 4489999999999999999999999886654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.7e-14  Score=106.21  Aligned_cols=61  Identities=21%  Similarity=0.336  Sum_probs=54.6

Q ss_pred             CccchHHHhhhhhhhHHHHHhhhcCCCCC--cCCChhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 024653          152 DSHSLAERVRRGKINERLRCLQDIVPGCY--KTMGMTMMLDEIINYVQSLQNQVEFLSMKLTA  212 (264)
Q Consensus       152 ~sHs~aERrRRekIneri~~Lr~LVP~~~--Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a  212 (264)
                      ..|+.+||+||++||+.|..|++|||++.  .+++|++||..||+||+.|+.+++.|..+...
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~   70 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL   70 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999999753  33799999999999999999999999876554

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.7e-14  Score=102.04  Aligned_cols=53  Identities=28%  Similarity=0.406  Sum_probs=47.1

Q ss_pred             CCccchHHHhhhhhhhHHHHHhhhcCCCCC-----cCCChhchHHHHHHHHHHHHHHH
Q 024653          151 TDSHSLAERVRRGKINERLRCLQDIVPGCY-----KTMGMTMMLDEIINYVQSLQNQV  203 (264)
Q Consensus       151 ~~sHs~aERrRRekIneri~~Lr~LVP~~~-----Kk~dKAsIL~eAI~YIK~LQ~QV  203 (264)
                      ...|+.+||+||++||+.|.+|++|||.+.     .+++|++||..||+||+.||.+.
T Consensus         6 R~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            357999999999999999999999999764     23799999999999999999753