Citrus Sinensis ID: 024654

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
cHHHHHHHHHHccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHcccccccccccccccccccccHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHcccccc
cHHHHHHHcHHHccccccccccccccccccccccEcccccccccccccccccccccccccccccccHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccHHHcccccccEcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHcccccc
matstmalsssfvgkavnlapsgnelsnggrismrktgsksvssgspwygpdrvkylgpfsgeppsyltgefpgdygwdtaglsadpetfaKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFseggldylgnpsliHAQSILAIWACQVVLMGAVegyriaggplgevtdplypggsfdplgladdpEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTgkgplenladhladpvnnnawayatnfvpgk
matstmalsssfvgkavnlapsgnelsnggrismrktgsksvssgspwygpDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
***********************************************WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFV***
*AT****************************************************YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG*
*********SSFVGKAVNLAPSGNELSNGGRISM***********SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
**********************************************PWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query264 2.2.26 [Sep-21-2011]
P07369267 Chlorophyll a-b binding p N/A no 1.0 0.988 0.913 1e-141
P27495267 Chlorophyll a-b binding p N/A no 1.0 0.988 0.910 1e-140
P27492266 Chlorophyll a-b binding p N/A no 1.0 0.992 0.902 1e-139
P27493265 Chlorophyll a-b binding p N/A no 1.0 0.996 0.901 1e-139
P07370265 Chlorophyll a-b binding p N/A no 1.0 0.996 0.905 1e-139
P12470266 Chlorophyll a-b binding p N/A no 1.0 0.992 0.890 1e-138
P27496267 Chlorophyll a-b binding p N/A no 1.0 0.988 0.891 1e-138
P12469267 Chlorophyll a-b binding p N/A no 1.0 0.988 0.891 1e-137
P04783267 Chlorophyll a-b binding p N/A no 1.0 0.988 0.895 1e-137
P27491267 Chlorophyll a-b binding p N/A no 1.0 0.988 0.895 1e-137
>sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1 Back     alignment and function desciption
 Score =  499 bits (1286), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/267 (91%), Positives = 255/267 (95%), Gaps = 3/267 (1%)

Query: 1   MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYL 57
           MATSTMALSSS F GKAV L+PS +E++  GR++MRKT +K+   SSGSPWYGPDRVKYL
Sbjct: 1   MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYL 60

Query: 58  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 117
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 118 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 177
           ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 178 GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 237
           GPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 238 LENLADHLADPVNNNAWAYATNFVPGK 264
           LENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAFATNFVPGK 267
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Solanum lycopersicum (taxid: 4081)
>sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1 Back     alignment and function description
>sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1 Back     alignment and function description
>sp|P27493|CB22_TOBAC Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1 Back     alignment and function description
>sp|P07370|CB2B_SOLLC Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1 Back     alignment and function description
>sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1 Back     alignment and function description
>sp|P27496|CB25_TOBAC Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1 Back     alignment and function description
>sp|P12469|CB23_NICPL Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1 Back     alignment and function description
>sp|P04783|CB25_PETSP Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1 Back     alignment and function description
>sp|P27491|CB27_TOBAC Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
255557387265 chlorophyll A/B binding protein, putativ 1.0 0.996 0.943 1e-142
346987809263 chloroplast chlorophyll A/B binding prot 0.996 1.0 0.939 1e-142
255567270265 chlorophyll A/B binding protein, putativ 1.0 0.996 0.935 1e-141
115825267 RecName: Full=Chlorophyll a-b binding pr 1.0 0.988 0.913 1e-139
3036949266 light harvesting chlorophyll a/b-binding 1.0 0.992 0.906 1e-139
3036955267 light harvesting chlorophyll a/b-binding 1.0 0.988 0.910 1e-139
115805267 RecName: Full=Chlorophyll a-b binding pr 1.0 0.988 0.910 1e-139
3036948267 light harvesting chlorophyll a/b-binding 1.0 0.988 0.910 1e-138
379069812265 chloroplast chlorophyll A/B binding prot 1.0 0.996 0.932 1e-138
3036946265 light harvesting chlorophyll a/b-binding 1.0 0.996 0.905 1e-138
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/265 (94%), Positives = 256/265 (96%), Gaps = 1/265 (0%)

Query: 1   MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGP 59
           MATSTMALSS SF GKAV L+PS  EL   GR+SMRKT +KSVSSGSPWYGPDRVKYLGP
Sbjct: 1   MATSTMALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAAKSVSSGSPWYGPDRVKYLGP 60

Query: 60  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120

Query: 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP 179
           NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAGGP 180

Query: 180 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 239
           LGEVTDP+YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 240 NLADHLADPVNNNAWAYATNFVPGK 264
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan] Back     alignment and taxonomy information
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic; AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags: Precursor gi|224932|prf||1204205G protein 3C,chlorophyll binding Back     alignment and taxonomy information
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris] Back     alignment and taxonomy information
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris] Back     alignment and taxonomy information
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic; AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags: Precursor gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris] Back     alignment and taxonomy information
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
TAIR|locus:2019287267 CAB3 "chlorophyll A/B binding 1.0 0.988 0.857 3.5e-123
TAIR|locus:2019372267 CAB2 "chlorophyll A/B-binding 1.0 0.988 0.857 3.5e-123
TAIR|locus:2040944266 LHB1B1 "light-harvesting chlor 1.0 0.992 0.857 7.2e-123
UNIPROTKB|P12330265 CAB1R "Chlorophyll a-b binding 0.988 0.984 0.873 9.2e-123
TAIR|locus:2019322267 CAB1 "chlorophyll A/B binding 1.0 0.988 0.853 1.5e-122
TAIR|locus:2040934265 LHB1B2 "photosystem II light h 0.992 0.988 0.853 1.1e-121
UNIPROTKB|P12331261 CAB2R "Chlorophyll a-b binding 0.977 0.988 0.868 1.7e-121
TAIR|locus:2089139266 LHCB2.3 "photosystem II light 0.984 0.977 0.796 9.7e-112
TAIR|locus:2042148265 LHCB2.1 "photosystem II light 0.977 0.973 0.791 6.8e-111
TAIR|locus:2044988265 LHCB2.2 "photosystem II light 0.984 0.981 0.780 1.4e-110
TAIR|locus:2019287 CAB3 "chlorophyll A/B binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1211 (431.4 bits), Expect = 3.5e-123, P = 3.5e-123
 Identities = 229/267 (85%), Positives = 246/267 (92%)

Query:     1 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLG 58
             MA STMALSS +F GKAVNL+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLG
Sbjct:     1 MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query:    59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118
             PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLA
Sbjct:    61 PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query:   119 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG- 177
             RNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG 
Sbjct:   121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query:   178 GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 237
             GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct:   181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query:   238 LENLADHLADPVNNNAWAYATNFVPGK 264
             +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   241 IENLADHLADPVNNNAWAFATNFVPGK 267
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009765 "photosynthesis, light harvesting" evidence=IEA
GO:0015979 "photosynthesis" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0016168 "chlorophyll binding" evidence=ISS;TAS
GO:0030076 "light-harvesting complex" evidence=ISS
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0010287 "plastoglobule" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
TAIR|locus:2019372 CAB2 "chlorophyll A/B-binding protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040944 LHB1B1 "light-harvesting chlorophyll-protein complex II subunit B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P12330 CAB1R "Chlorophyll a-b binding protein 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2019322 CAB1 "chlorophyll A/B binding protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040934 LHB1B2 "photosystem II light harvesting complex gene B1B2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P12331 CAB2R "Chlorophyll a-b binding protein 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2089139 LHCB2.3 "photosystem II light harvesting complex gene 2.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042148 LHCB2.1 "photosystem II light harvesting complex gene 2.1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044988 LHCB2.2 "photosystem II light harvesting complex gene 2.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P08222CB22_CUCSANo assigned EC number0.96600.78031.0N/Ano
P08221CB21_CUCSANo assigned EC number0.90550.96210.9960N/Ano
P27494CB23_TOBACNo assigned EC number0.78510.98100.9773N/Ano
P12328CB21_LEMGINo assigned EC number0.85530.88250.8825N/Ano
P12329CB21_MAIZENo assigned EC number0.86890.98100.9885N/Ano
P13851CB21_SINALNo assigned EC number0.87211.00.9924N/Ano
P27493CB22_TOBACNo assigned EC number0.90181.00.9962N/Ano
P27490CB28_PEANo assigned EC number0.86240.99620.9813N/Ano
P27491CB27_TOBACNo assigned EC number0.89511.00.9887N/Ano
P27496CB25_TOBACNo assigned EC number0.89131.00.9887N/Ano
P27497CB29_MAIZENo assigned EC number0.87310.98860.9849N/Ano
P06671CB22_MAIZENo assigned EC number0.87310.98860.9849N/Ano
P27495CB24_TOBACNo assigned EC number0.91011.00.9887N/Ano
P20866CB2_PHYPANo assigned EC number0.78060.98860.9702N/Ano
P04778CB1C_ARATHNo assigned EC number0.85391.00.9887yesno
P04779CB21_PETSPNo assigned EC number0.88010.99620.9887N/Ano
P07371CB22_PEANo assigned EC number0.8750.95830.9405N/Ano
P07370CB2B_SOLLCNo assigned EC number0.90561.00.9962N/Ano
Q00827CB48_MAIZENo assigned EC number0.80520.98860.9886N/Ano
P12469CB23_NICPLNo assigned EC number0.89131.00.9887N/Ano
P0CJ48CB1A_ARATHNo assigned EC number0.85761.00.9887yesno
Q8VZ87CB1B_ARATHNo assigned EC number0.85761.00.9887yesno
P24006CB2A_PYRPYNo assigned EC number0.81381.00.9496N/Ano
P27518CB21_GOSHINo assigned EC number0.80370.98100.9773N/Ano
P12333CB2A_SPIOLNo assigned EC number0.89511.00.9887N/Ano
P12331CB22_ORYSJNo assigned EC number0.86890.97720.9885nono
P12330CB21_ORYSJNo assigned EC number0.87310.98860.9849yesno
P09755CB22_SOYBNNo assigned EC number0.86410.96590.9960nono
P09756CB23_SOYBNNo assigned EC number0.92030.93930.9429nono
Q10HD0CB23_ORYSJNo assigned EC number0.78060.97720.9809nono
P04784CB21_WHEATNo assigned EC number0.85010.99620.9887N/Ano
P92919CB23_APIGRNo assigned EC number0.87160.99620.9962N/Ano
P14279CB25_SOLLCNo assigned EC number0.84810.89010.9915N/Ano
P04781CB23_PETSPNo assigned EC number0.88011.00.9887N/Ano
P04780CB22_PETSPNo assigned EC number0.86511.00.9887N/Ano
P04783CB25_PETSPNo assigned EC number0.89511.00.9887N/Ano
P04782CB24_PETSPNo assigned EC number0.89130.99620.9887N/Ano
P27492CB21_TOBACNo assigned EC number0.90221.00.9924N/Ano
P07369CB2G_SOLLCNo assigned EC number0.91381.00.9887N/Ano
A2XJ35CB23_ORYSINo assigned EC number0.78060.97720.9809N/Ano
P14278CB24_SOLLCNo assigned EC number0.78880.98100.9773N/Ano
P12062CB26_PETSPNo assigned EC number0.78140.98100.9773N/Ano
P10049CB21_PINTHNo assigned EC number0.78810.98860.9812N/Ano
P12470CB25_NICPLNo assigned EC number0.89091.00.9924N/Ano
P12471CB21_SOYBNNo assigned EC number0.94890.89010.9591yesno
P15194CB2B_PINSYNo assigned EC number0.84640.96960.9343N/Ano
P15195CB23_POLMUNo assigned EC number0.81410.98480.9811N/Ano
P15193CB2A_PINSYNo assigned EC number0.82111.00.9496N/Ano
P04159CB21_PEANo assigned EC number0.91220.86361.0N/Ano
P08963CB22_HORVUNo assigned EC number0.87540.99620.9962N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Lhcb1-1
light-harvesting complex II protein Lhcb1 (265 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
PLN00025262 PLN00025, PLN00025, photosystem II light harvestin 0.0
PLN00171324 PLN00171, PLN00171, photosystem light-harvesting c 1e-77
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 6e-56
PLN00048262 PLN00048, PLN00048, photosystem I light harvesting 2e-46
PLN00147252 PLN00147, PLN00147, light-harvesting complex I chl 2e-42
PLN00099243 PLN00099, PLN00099, light-harvesting complex IChlo 6e-40
PLN00187286 PLN00187, PLN00187, photosystem II light-harvestin 1e-39
PLN00097244 PLN00097, PLN00097, photosystem I light harvesting 1e-38
PLN00098267 PLN00098, PLN00098, light-harvesting complex I chl 2e-38
PLN00100246 PLN00100, PLN00100, light-harvesting complex chlor 6e-33
PLN00101250 PLN00101, PLN00101, Photosystem I light-harvesting 1e-30
PLN00170255 PLN00170, PLN00170, photosystem II light-harvestin 4e-18
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 2e-08
PLN00120202 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi 8e-05
PLN00089209 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi 8e-05
>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information 
 Score =  535 bits (1381), Expect = 0.0
 Identities = 219/262 (83%), Positives = 233/262 (88%), Gaps = 1/262 (0%)

Query: 4   STMALSSSFVGKAVNLAPSGNELSNG-GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSG 62
           +    S++F G+A    P+      G GR++MRKT +K+  SGS WYGPDR KYLGPFSG
Sbjct: 1   AMALSSTAFAGQAALKPPNELSRKVGNGRVTMRKTVAKAAGSGSIWYGPDRPKYLGPFSG 60

Query: 63  EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 122
           E PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCV PELLA+NGV
Sbjct: 61  ETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGV 120

Query: 123 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGE 182
           KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+ GGPLGE
Sbjct: 121 KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGE 180

Query: 183 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
             DPLYPGGSFDPLGLADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA
Sbjct: 181 GLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 240

Query: 243 DHLADPVNNNAWAYATNFVPGK 264
           DHLADPV NNAWAYATNFVPGK
Sbjct: 241 DHLADPVANNAWAYATNFVPGK 262

Length = 262
>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 264
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 100.0
PLN00171324 photosystem light-harvesting complex -chlorophyll 100.0
PLN00187286 photosystem II light-harvesting complex II protein 100.0
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 100.0
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 100.0
PLN00101250 Photosystem I light-harvesting complex type 4 prot 100.0
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 100.0
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 100.0
PLN00099243 light-harvesting complex IChlorophyll A-B binding 100.0
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 100.0
PLN00170255 photosystem II light-harvesting-Chl-binding protei 100.0
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 100.0
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 100.0
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 100.0
PLN00098 267 light-harvesting complex I chlorophyll a/b-binding 99.57
PLN00101 250 Photosystem I light-harvesting complex type 4 prot 99.57
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 99.49
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 99.46
PLN00170 255 photosystem II light-harvesting-Chl-binding protei 99.45
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 99.44
PLN00171 324 photosystem light-harvesting complex -chlorophyll 99.43
PLN00097 244 photosystem I light harvesting complex Lhca2/4, ch 99.43
PLN00187286 photosystem II light-harvesting complex II protein 99.42
PLN00025 262 photosystem II light harvesting chlorophyll a/b bi 99.41
PLN00100 246 light-harvesting complex chlorophyll-a/b protein o 99.4
PLN00099 243 light-harvesting complex IChlorophyll A-B binding 99.34
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 99.32
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.08
PLN00084214 photosystem II subunit S (PsbS); Provisional 98.1
PHA0233735 putative high light inducible protein 98.02
PLN00014250 light-harvesting-like protein 3; Provisional 97.5
PHA0233735 putative high light inducible protein 97.21
PLN00014250 light-harvesting-like protein 3; Provisional 94.86
PLN00084214 photosystem II subunit S (PsbS); Provisional 90.72
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.8e-82  Score=574.90  Aligned_cols=255  Identities=85%  Similarity=1.428  Sum_probs=232.3

Q ss_pred             ccccccccccCCCCCC--ccccCccccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 024654            9 SSSFVGKAVNLAPSGN--ELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD   86 (264)
Q Consensus         9 ~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wyg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d   86 (264)
                      +++|+|++..+.....  ++ +.+|++||++.++...+.+.||++||++|||||+.++|+||||++||||||||+||++|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~d   84 (262)
T PLN00025          6 STAFAGQAALKPPNELSRKV-GNGRVTMRKTVAKAAGSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSAD   84 (262)
T ss_pred             hhhhhccccccCCcccchhc-cccchhhchhhcccccccccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccC
Confidence            3899999875554422  33 33688888753333235678999999999999998899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCcccCchhhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHH
Q 024654           87 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVL  166 (264)
Q Consensus        87 ~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f~~~~w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l  166 (264)
                      |++++||||+|||||||||||++||++||+++..|+.|++++||++|.++|++++++|+++|.++++|++.+++++|+++
T Consensus        85 p~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~l  164 (262)
T PLN00025         85 PETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVL  164 (262)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999998888888888999999999999999999999999999999999999999


Q ss_pred             HHhhhceeccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhhhhC
Q 024654          167 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA  246 (264)
Q Consensus       167 ~g~vE~~r~~gg~~g~~~d~~yPGg~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~hla  246 (264)
                      ||++|.+|+.+++.++..|+.||||.||||||.+|+|+++++|+||||||||||+||+||++|+++||+||++||.+||+
T Consensus       165 mg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hla  244 (262)
T PLN00025        165 MGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA  244 (262)
T ss_pred             HHHHHHhcccCCcccccccCcCCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhc
Confidence            99999999988777776788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcchhccccccCCCC
Q 024654          247 DPVNNNAWAYATNFVPGK  264 (264)
Q Consensus       247 ~P~~~n~~~~~~~~~~~~  264 (264)
                      ||++||+|+++++|+|++
T Consensus       245 dP~~~n~~~~~~~~~~~~  262 (262)
T PLN00025        245 DPVANNAWAYATNFVPGK  262 (262)
T ss_pred             CccccchhhhhhhcCCCC
Confidence            999999999999999985

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
1rwt_A232 Crystal Structure Of Spinach Major Light-harvesting 1e-127
1vcr_A232 An Icosahedral Assembly Of Light-Harvesting Chlorop 1e-125
2bhw_A232 Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res 1e-124
2wsc_1241 Improved Model Of Plant Photosystem I Length = 241 2e-33
2o01_1187 The Structure Of A Plant Photosystem I Supercomplex 3e-33
2wsc_3276 Improved Model Of Plant Photosystem I Length = 276 8e-31
2o01_2186 The Structure Of A Plant Photosystem I Supercomplex 4e-30
2wsc_2269 Improved Model Of Plant Photosystem I Length = 269 4e-30
3lw5_1170 Improved Model Of Plant Photosystem I Length = 170 3e-29
3pl9_A243 Crystal Structure Of Spinach Minor Light-Harvesting 3e-25
3lw5_2176 Improved Model Of Plant Photosystem I Length = 176 1e-23
2wsc_4251 Improved Model Of Plant Photosystem I Length = 251 2e-23
2o01_3165 The Structure Of A Plant Photosystem I Supercomplex 1e-20
3lw5_3172 Improved Model Of Plant Photosystem I Length = 172 1e-17
2o01_4165 The Structure Of A Plant Photosystem I Supercomplex 2e-17
3lw5_4166 Improved Model Of Plant Photosystem I Length = 166 1e-16
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232 Back     alignment and structure 
Iteration: 1

 Score =  449 bits (1155), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/232 (93%), Positives = 223/232 (96%), Gaps = 2/232 (0%)
Query: 35  RKTGSK--SVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
           RKT  K  +V S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAK
Sbjct: 1   RKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAK 60
Query: 93  NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 152
           NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+H
Sbjct: 61  NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 120
Query: 153 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 212
           AQSILAIWACQV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE
Sbjct: 121 AQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 180
Query: 213 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
           IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct: 181 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 232
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232 Back     alignment and structure
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241 Back     alignment and structure
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276 Back     alignment and structure
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269 Back     alignment and structure
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170 Back     alignment and structure
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243 Back     alignment and structure
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176 Back     alignment and structure
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251 Back     alignment and structure
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172 Back     alignment and structure
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 8e-91
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 2e-59
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 6e-58
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 4e-56
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 5e-56
2wsc_2 269 LHCA2, type II chlorophyll A/B binding protein fro 3e-05
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 6e-53
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232 Back     alignment and structure
 Score =  267 bits (683), Expect = 8e-91
 Identities = 212/229 (92%), Positives = 219/229 (95%)

Query: 36  KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
            T  K  SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRE
Sbjct: 4   ATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRE 63

Query: 96  LEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQS 155
           LEVIH RWAMLGALG VFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQS
Sbjct: 64  LEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQS 123

Query: 156 ILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 215
           ILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KN
Sbjct: 124 ILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKN 183

Query: 216 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
           GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 184 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241 Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276 Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251 Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 100.0
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 100.0
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 100.0
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 100.0
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 99.42
2bhw_A 232 Chlorophyll A-B binding protein AB80; LHC-II, phot 99.42
2wsc_4 251 Chlorophyll A-B binding protein P4, chloroplastic; 99.38
2wsc_2 269 LHCA2, type II chlorophyll A/B binding protein fro 99.35
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 99.34
2wsc_1 241 AT3G54890, LHCA1; photosynthesis, electron transfe 99.23
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
Probab=100.00  E-value=5.3e-79  Score=547.11  Aligned_cols=225  Identities=94%  Similarity=1.560  Sum_probs=213.1

Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhh
Q 024654           40 KSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR  119 (264)
Q Consensus        40 ~~~~~~~~wyg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~  119 (264)
                      |+++++++||++||++|+|||+.++|+||||++|||||||||||++|+|+++||||+|||||||||||++||++||++++
T Consensus         8 ~~~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~   87 (232)
T 2bhw_A            8 KVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR   87 (232)
T ss_dssp             --CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence            34566789999999999999987899999999999999999999999999999999999999999999999999999998


Q ss_pred             cCcccCchhhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccCCCCCCCCCCCCCCCCCCCCCCC
Q 024654          120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA  199 (264)
Q Consensus       120 ~G~~f~~~~w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~gg~~g~~~d~~yPGg~FDPLgl~  199 (264)
                      .|++|++++|+++|.++|++++++|+++|.+.++|++.+++++|+++||++|.+|+.+++.++..|+.||||.||||||.
T Consensus        88 ~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~  167 (232)
T 2bhw_A           88 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA  167 (232)
T ss_dssp             TTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTT
T ss_pred             CCcCCcccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhc
Confidence            99999888999999999999899999999999999999999999999999999998877777777888999999999999


Q ss_pred             CCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhhhhCCCCCcchhccccccCCCC
Q 024654          200 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK  264 (264)
Q Consensus       200 ~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~hla~P~~~n~~~~~~~~~~~~  264 (264)
                      +|+|+++++|++|||||||||+||+|+++|+++||++|++||.+|++||++||+|+++++|+||+
T Consensus       168 ~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~~~~~~~  232 (232)
T 2bhw_A          168 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK  232 (232)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTTTTCSCC
T ss_pred             cchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHHhhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999985
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 264
d1rwta_218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 1e-107
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  308 bits (790), Expect = e-107
 Identities = 211/218 (96%), Positives = 215/218 (98%)

Query: 46  SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 105
           SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM
Sbjct: 1   SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 60

Query: 106 LGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVV 165
           LGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+
Sbjct: 61  LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVI 120

Query: 166 LMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 225
           LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG
Sbjct: 121 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 180

Query: 226 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 263
           FFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPG
Sbjct: 181 FFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPG 218

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 100.0
d1rwta_ 218 Chlorophyll a-b binding protein {Spinach (Spinacia 99.5
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=5.2e-78  Score=533.04  Aligned_cols=218  Identities=97%  Similarity=1.637  Sum_probs=205.8

Q ss_pred             CCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCcccC
Q 024654           46 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG  125 (264)
Q Consensus        46 ~~wyg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f~  125 (264)
                      |+||||||+||++||++++|+||||++||||||||||||+|+++++||||+|||||||||||++||+++|++++.+..++
T Consensus         1 ~~~~~~~r~~~~~~~~~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~~~~~   80 (218)
T d1rwta_           1 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG   80 (218)
T ss_dssp             CTTSSTTCCCTTGGGGCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCS
T ss_pred             CCCCCCCCcccCCccccCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCCCCCC
Confidence            58999999999999987899999999999999999999999999999999999999999999999999999998777777


Q ss_pred             chhhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 024654          126 EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF  205 (264)
Q Consensus       126 ~~~w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~gg~~g~~~d~~yPGg~FDPLgl~~dpe~~  205 (264)
                      ...|++++..++..+.++++..|.....|++..+|++++.+++.+|.+|..+++.+...|..|||+.||||++.+++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~fdPlg~~~~~e~~  160 (218)
T d1rwta_          81 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF  160 (218)
T ss_dssp             CCSHHHHGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHCBTTBCCSSSSCCCGGGCTTCTTCSHHHH
T ss_pred             CcccccccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccCCCcccccCCCCCCCCccccccCCCHHHH
Confidence            78899998888888888888888888888888899999999999999998777777777889999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhhhhCCCCCcchhccccccCCC
Q 024654          206 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG  263 (264)
Q Consensus       206 ~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~hla~P~~~n~~~~~~~~~~~  263 (264)
                      +++|+|||||||||||||+||++|++|||++|++||.||++||++||+|+++||||||
T Consensus       161 ~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~P~~~n~~~~~~~~~~~  218 (218)
T d1rwta_         161 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPG  218 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHCTTTSSGGGGTTSSCCC
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcCchhhhHHHHHhccCCC
Confidence            9999999999999999999999999999999999999999999999999999999997
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure