Citrus Sinensis ID: 024673

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MYHLRRSAISSVRSGLSCALKSEKRLLFPVSSSASAVENSAKSFSTALRSDFARPASADSKQISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNVCLARMVLTEIRSRHLCSFCLCNRRK
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccEEEEccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccEEEEEccEEEEHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHcccEEEEcccccccccccccccEEEEcccccEEEEEEEEEEEccccEEEEEEEEcEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccHHHccccEEEEcccccHHcccccccccHccccccccccHHHHHccccccccccccccccEEEEEcccccccccccccccccEcccccHHcccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHcccccEEccccccccccccccccEEEEccccccEEEEEEHHHHHEHHHHHcccccEEEEEcccc
Coil and Loop (DISEMBL)
MYHLRRSAISSVRSGLSCALksekrllfpvsssasavENSAKSFSTALrsdfarpasadskqisngvsahfrgqcnrgyivnlrlpfqqmdsrvansktycsarsfasktskqgtetssepkkdistvedpfdaptynipekpvtftegASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIqddgqvrvrigspitgygqesrnraarqripnrvytdefgIEHVEVNVCLARMVLTEIRSRHLCSfclcnrrk
Flexible Loop (DISEMBL)
myhlrrsaissvrsgLSCALKSEKRLLfpvsssasaveNSAKSFSTALRSDFARPASADSKQISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSarsfasktskqgtetssepkkdistvedpfdaptyniPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKAlkriqddgqvrVRIGspitgygqesrnraarqripnrvytdefgieHVEVNVCLARMVLTeirsrhlcsfclcnrrk
Low Complexity Region (SEG)
MYHLRRSAISSVRSGLSCALKSEKRLLFPVsssasavensaksFSTALRSDFARPASADSKQISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSliilaglgvagaaayavFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNVCLARMVLTEIRSRHLCSFCLCNRRK
Disordered region (IsUnstruct)
*******************************************************************SAHFRGQCNRGYIVNLRLPFQQM**********************************************YNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG**********RIPNRVYTDEFGIEHVEVNVCLARMVLTEIRSRHLCSFCLCN***
Disordered Region (DISOPRED)
****************************************************************************************************C****************************************KPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQE************RVYTDEFGIEHVEVNVCLARMVLTEIRSRHLCSFCLCNR**
Disordered Region (DISEMBL)
***************LSCALKSEKRLLFPV*************FSTALRSDF***********SNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSAR*********************STVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGY*********RQRIPNRVYTDEFGIEHVEVNVCLARMVLTEIRSRHLCSFCLCNRRK
Disordered Region (DISPRO)
**************GLSCALKSEKRLLFPVS*******************DFARPASADS*QISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSA*S**S***************DISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNVCLARMVLTEIRSRHLCSFCLCNR**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYHLRRSAISSVRSGLSCALKSEKRLLFPVSSSASAVENSAKSFSTALRSDFARPASADSKQISNGVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNVCLARMVLTEIRSRHLCSFCLCNRRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q1G3L1	269	Probable mitochondrial im	yes	no	0.571	0.561	0.735	1e-53
Q5XKA2	232	Mitochondrial import inne	N/A	no	0.329	0.375	0.340	2e-06
Q3SZV6	244	Mitochondrial import inne	yes	no	0.325	0.352	0.306	7e-06
Q5U2X7	245	Mitochondrial import inne	yes	no	0.325	0.351	0.306	7e-05
Q9BVV7	248	Mitochondrial import inne	yes	no	0.325	0.346	0.295	0.0002
Q6CAQ9	269	Mitochondrial import inne	yes	no	0.356	0.349	0.305	0.0004

>sp|Q1G3L1|TIM21_ARATH Probable mitochondrial import inner membrane translocase subunit TIM21 OS=Arabidopsis thaliana GN=TIM21 PE=1 SV=1

 Score =  209 bits (532), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 131/151 (86%)

Query: 91  DSRVANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGA 150
           ++R  N  +    RSFAS+TSK+     ++ KK+++TVEDPFD+PTY+IPEKPVTFTEGA
Sbjct: 72  EARPKNINSSYFTRSFASRTSKEPGNQQNKAKKEVTTVEDPFDSPTYHIPEKPVTFTEGA 131

Query: 151 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 210
           SYSL+ILAGLGVAGAA Y VFKELIF+PKEYK+F+KALKRIQDDGQVRVRIGSPI GYGQ
Sbjct: 132 SYSLVILAGLGVAGAAGYGVFKELIFQPKEYKVFDKALKRIQDDGQVRVRIGSPIKGYGQ 191

Query: 211 ESRNRAARQRIPNRVYTDEFGIEHVEVNVCL 241
           E+RNRAARQRIPNRV+TDE G+EHVEVN  +
Sbjct: 192 ETRNRAARQRIPNRVFTDEDGVEHVEVNFYI 222

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5XKA2|TIM21_XENLA Mitochondrial import inner membrane translocase subunit Tim21 OS=Xenopus laevis GN=timm21 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 134 APTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQD 193
           AP  N   K        +Y +++L G+GV G   Y VF+EL       KI+ +AL++ + 
Sbjct: 80  APPQNASHKVKEAGRDFTYFIVVLIGIGVTGGLFYVVFEELFSSSSPSKIYGEALEKCRS 139

Query: 194 DGQVRVRIGSPITGYGQESRNRAARQRI 221
             +V    G PI GYG+ +R R  RQ +
Sbjct: 140 HPEVIGAFGEPIKGYGETTR-RGRRQHV 166

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Xenopus laevis (taxid: 8355)

>sp|Q3SZV6|TIM21_BOVIN Mitochondrial import inner membrane translocase subunit Tim21 OS=Bos taurus GN=TIMM21 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 2/88 (2%)

Query: 151 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 210
           +Y +++L G+ + G   Y +F+EL       KI+ KAL++ +   +V    G P+ GYG+
Sbjct: 109 TYLIVVLIGISITGGLFYTIFRELFSSSSPNKIYGKALEKCRSHPEVISVFGEPVKGYGE 168

Query: 211 ESRNRAARQRIPNRVYTDEFGIEHVEVN 238
            +R R  RQ +    Y  + G++H+ V 
Sbjct: 169 VTR-RGRRQLVSFIEYKKD-GLKHMRVK 194

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Bos taurus (taxid: 9913)

>sp|Q5U2X7|TIM21_RAT Mitochondrial import inner membrane translocase subunit Tim21 OS=Rattus norvegicus GN=Timm21 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 150 ASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYG 209
            +Y +++L G+ + G+  Y +FKEL        I+ KAL + +   +V    G P+ GYG
Sbjct: 107 VTYLIVVLFGVSITGSLLYTIFKELFSSSSPNIIYGKALGKCRTHPEVISVFGEPVKGYG 166

Query: 210 QESRNRAARQRIPNRVYTDEFGIEHVEV 237
           + SR R  RQ +    Y +  G++ + V
Sbjct: 167 EMSR-RGRRQHVSFTEYANN-GLKRIRV 192

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q9BVV7|TIM21_HUMAN Mitochondrial import inner membrane translocase subunit Tim21 OS=Homo sapiens GN=TIMM21 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 151 SYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQ 210
           +Y +++L G+ + G   Y +FKEL       KI+ +AL++ +   +V    G  + GYG+
Sbjct: 109 TYLIVVLFGISITGGLFYTIFKELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGE 168

Query: 211 ESRNRAARQRIPNRVYTDEFGIEHVEVN 238
            +R R  RQ +    Y  + G++H  V 
Sbjct: 169 VTR-RGRRQHVRFTEYVKD-GLKHTCVK 194

May participate in the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Homo sapiens (taxid: 9606)

>sp|Q6CAQ9|TIM21_YARLI Mitochondrial import inner membrane translocase subunit TIM21 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TIM21 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 145 TFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSP 204
            F + + Y  IILA LG+ G   Y +  EL+    + +IFN+A K I+ +  V   +G  
Sbjct: 102 VFFQLSWYLGIILAALGLFGLVWYYLIMELVMPSGDVRIFNRAFKEIEKNEDVMRVLGGQ 161

Query: 205 ITGYGQESRNRAARQRIP-NRVYTDEFGIEHVEVN 238
           ++  G+    R  R + P ++   D++G EH+ +N
Sbjct: 162 LSSMGEGGGGRWGRNQPPVSKRGIDKYGREHIWMN 196

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Required to keep the TOM and the TIM23 complexes in close contact. At some point, it is released from the TOM23 complex to allow protein translocation into the mitochondrial matrix.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
224136346	304	predicted protein [Populus trichocarpa]	0.905	0.786	0.584	1e-63
224067574	238	predicted protein [Populus trichocarpa]	0.666	0.739	0.75	4e-63
225427488	314	PREDICTED: TIM21-like protein, mitochond	0.897	0.754	0.516	1e-61
255541104	312	Import inner membrane translocase subuni	0.886	0.75	0.565	2e-57
242036295	286	hypothetical protein SORBIDRAFT_01g04084	0.530	0.489	0.723	6e-53
212723808	263	uncharacterized protein LOC100193378 [Ze	0.534	0.536	0.702	1e-52
194703636	263	unknown [Zea mays]	0.534	0.536	0.702	1e-52
449494116	323	PREDICTED: uncharacterized LOC101212713	0.534	0.436	0.801	6e-52
297721981	265	Os03g0253800 [Oryza sativa Japonica Grou	0.522	0.520	0.688	6e-52
449446321	323	PREDICTED: uncharacterized protein LOC10	0.534	0.436	0.801	7e-52

>gi|224136346|ref|XP_002326838.1| predicted protein [Populus trichocarpa] gi|222835153|gb|EEE73588.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 149/255 (58%), Positives = 187/255 (73%), Gaps = 16/255 (6%)

Query: 1   MYHLRR-SAISSVRSGLSCALKSEKRLLFPVS-------SSASAVENSA--KSFSTALRS 50
           M H+RR S     ++GL   L  E++++  VS       S++ A + SA   S +   +S
Sbjct: 1   MQHIRRCSGFLRSQNGLPLFL--ERKIVKGVSDVGLASFSTSMAAQRSALGNSATRLPKS 58

Query: 51  DFARPASADSKQISN----GVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSF 106
           D+ R  ++++  ++     G+ A + G+ NR  +V+L  PFQ M++   ++   C ARSF
Sbjct: 59  DYVRHFASNANHLTKVRWLGIPAMYGGKSNRECLVSLGSPFQIMENHGGSTINICVARSF 118

Query: 107 ASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAA 166
           ASK SK+ T   SE +KD+STVEDPFDAPTYNIPEKPVTFTEGASYS+IILAGLGVA AA
Sbjct: 119 ASKASKKETRNQSETRKDLSTVEDPFDAPTYNIPEKPVTFTEGASYSIIILAGLGVAAAA 178

Query: 167 AYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVY 226
           AYAVFKELIFEPKEYKIFNKALKRIQDD QVRVRIGSPITGYGQESRNRAARQRIPNR++
Sbjct: 179 AYAVFKELIFEPKEYKIFNKALKRIQDDSQVRVRIGSPITGYGQESRNRAARQRIPNRIF 238

Query: 227 TDEFGIEHVEVNVCL 241
           TDE G+EHV++N  +
Sbjct: 239 TDEDGVEHVQINFYI 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067574|ref|XP_002302508.1| predicted protein [Populus trichocarpa] gi|222844234|gb|EEE81781.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 132/176 (75%), Positives = 149/176 (84%)

Query: 66  GVSAHFRGQCNRGYIVNLRLPFQQMDSRVANSKTYCSARSFASKTSKQGTETSSEPKKDI 125
           G+ A + GQ NR Y+V+LR  FQ M++   ++   C ARSFASK SK+ T   SE KKD+
Sbjct: 12  GIPAIYGGQPNREYLVSLRSSFQIMETHGESTINICFARSFASKASKKETHKQSETKKDV 71

Query: 126 STVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFN 185
           STVEDPFDAPTYNIPEKPVTFTEGASYS+IILAGL VA AAAYAVFKELIFEPKEYKIFN
Sbjct: 72  STVEDPFDAPTYNIPEKPVTFTEGASYSIIILAGLAVAAAAAYAVFKELIFEPKEYKIFN 131

Query: 186 KALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNVCL 241
           KALKRIQDD QVRVRIGSPITGYGQESRNRAARQRIPNR++TDE G+EHV++N  +
Sbjct: 132 KALKRIQDDSQVRVRIGSPITGYGQESRNRAARQRIPNRIFTDEDGVEHVQINFYI 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427488|ref|XP_002263208.1| PREDICTED: TIM21-like protein, mitochondrial [Vitis vinifera] gi|296088479|emb|CBI37470.3| unnamed protein product [Vitis vinifera]

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/265 (51%), Positives = 170/265 (64%), Gaps = 28/265 (10%)

Query: 1   MYHLRRSAISSVRSGLSCALKSEKRLLFPVSSSASAVENSA--KSFSTAL--RSDFARPA 56
           M+H+++ A+SS++   S  +KS   +   V    S   + A    FS+ +  R+ F  P 
Sbjct: 1   MHHMKKHAVSSLKRRWSGIIKSPNGVCSLVEHKPSMCVSDAGLSGFSSIVSERTAF-NPG 59

Query: 57  SADSKQI-------------SNGVSAHFRG----------QCNRGYIVNLRLPFQQMDSR 93
           + +  Q+             +N +    RG             R  IV    P++ +++ 
Sbjct: 60  TTNRLQVLIKSRNLRQSAVNANCIIKDVRGVDGTSVLSARWQTRERIVGFCSPYRPIETH 119

Query: 94  VANSKTYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYS 153
             ++   C ARS AS  SK   E  SE +KDISTVEDPFDAPTYNIPEKPVTF EGASYS
Sbjct: 120 GKSTVVPCFARSCASTASKSPEEKQSETRKDISTVEDPFDAPTYNIPEKPVTFAEGASYS 179

Query: 154 LIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESR 213
           +IIL GLG+A AA YAVFKELIFEPKEYKIF KALKR+Q+DGQVRVRIGSPITGYGQESR
Sbjct: 180 VIILVGLGIAAAAGYAVFKELIFEPKEYKIFGKALKRVQEDGQVRVRIGSPITGYGQESR 239

Query: 214 NRAARQRIPNRVYTDEFGIEHVEVN 238
           NRAARQRI NR++TDE G+EHVEVN
Sbjct: 240 NRAARQRISNRIWTDEDGVEHVEVN 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541104|ref|XP_002511616.1| Import inner membrane translocase subunit tim21, mitochondrial precursor, putative [Ricinus communis] gi|223548796|gb|EEF50285.1| Import inner membrane translocase subunit tim21, mitochondrial precursor, putative [Ricinus communis]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 147/260 (56%), Positives = 174/260 (66%), Gaps = 26/260 (10%)

Query: 1   MYHLRRSAIS---------SVRSGLSCALKSE--KRL----LFPVSSSAS----AVENSA 41
           M H RRSA+S           ++GLS  L+ +  KR+    L   SSSA+    AV NS 
Sbjct: 1   MEHFRRSAMSLRSRCSDLFECQNGLSSVLERKLIKRVTDVGLATFSSSATSERAAVNNST 60

Query: 42  KSFSTALRSDFARPASADSKQISNGV---SAHFRGQCNRGYIVNLRLPFQQMDSRVANSK 98
           K      +  + R    ++      +   + ++  QC    I  L   FQ +     ++ 
Sbjct: 61  KKLPRDFKLGYVRRPVGEANHGPKDILCANGNYDKQC----IAGLGSQFQLVKLLGGSTT 116

Query: 99  TYCSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILA 158
               ARSFASK SK+  E +SE +K++STVEDPFDAPTYNIPEKPVTFTEGASYS+IILA
Sbjct: 117 NSWFARSFASKASKKTGEATSETRKEVSTVEDPFDAPTYNIPEKPVTFTEGASYSIIILA 176

Query: 159 GLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAAR 218
           GLGVA AA YAVFKELIFEPKEYKIFNKALKRIQDD QVRVRIGSPITGYGQESRNRAAR
Sbjct: 177 GLGVAAAAGYAVFKELIFEPKEYKIFNKALKRIQDDAQVRVRIGSPITGYGQESRNRAAR 236

Query: 219 QRIPNRVYTDEFGIEHVEVN 238
           QRIPN++YTDE G+EHV VN
Sbjct: 237 QRIPNKIYTDEDGVEHVLVN 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242036295|ref|XP_002465542.1| hypothetical protein SORBIDRAFT_01g040840 [Sorghum bicolor] gi|241919396|gb|EER92540.1| hypothetical protein SORBIDRAFT_01g040840 [Sorghum bicolor]

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 102/141 (72%), Positives = 114/141 (80%), Gaps = 1/141 (0%)

Query: 101 CSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGL 160
           CS R  AS  S Q  + + +  KD+STVE PFD  TYNIPEKPVTFTEGASYSL+ILAGL
Sbjct: 98  CSVRPCAS-YSTQADQKAKQEGKDLSTVEHPFDDITYNIPEKPVTFTEGASYSLVILAGL 156

Query: 161 GVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQR 220
           G+AG A YAVFKELIFEPKEYKIF KAL RIQ D QV  RIG PITGYGQE+RNRAARQR
Sbjct: 157 GIAGVAGYAVFKELIFEPKEYKIFGKALARIQSDSQVTSRIGHPITGYGQETRNRAARQR 216

Query: 221 IPNRVYTDEFGIEHVEVNVCL 241
           IPN+++TDE G+EHVEVN  +
Sbjct: 217 IPNKIWTDEDGVEHVEVNFLI 237

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212723808|ref|NP_001131979.1| uncharacterized protein LOC100193378 [Zea mays] gi|194693092|gb|ACF80630.1| unknown [Zea mays] gi|194703382|gb|ACF85775.1| unknown [Zea mays] gi|414865868|tpg|DAA44425.1| TPA: hypothetical protein ZEAMMB73_295039 [Zea mays] gi|414865869|tpg|DAA44426.1| TPA: hypothetical protein ZEAMMB73_295039 [Zea mays]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/141 (70%), Positives = 113/141 (80%)

Query: 101 CSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGL 160
           CS R  AS +++   +   +  KD+S VE PFD  TYNIPEKPVTFTEGASYSL+ILAGL
Sbjct: 75  CSVRPSASYSTQASDQKGKQEGKDLSNVEHPFDDITYNIPEKPVTFTEGASYSLVILAGL 134

Query: 161 GVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQR 220
           G+AG A YAVFKELIFEPKEYKIF KAL RIQ D QV  RIG PITGYGQE+RNRAARQR
Sbjct: 135 GIAGLAGYAVFKELIFEPKEYKIFGKALARIQSDSQVTSRIGHPITGYGQETRNRAARQR 194

Query: 221 IPNRVYTDEFGIEHVEVNVCL 241
           IPN+++TDE G+EHVEVN  +
Sbjct: 195 IPNKIWTDEDGVEHVEVNFLI 215

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194703636|gb|ACF85902.1| unknown [Zea mays]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/141 (70%), Positives = 113/141 (80%)

Query: 101 CSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGL 160
           CS R  AS +++   +   +  KD+S VE PFD  TYNIPEKPVTFTEGASYSL+ILAGL
Sbjct: 75  CSVRPSASYSTQASDQKGKQEGKDLSNVEHPFDDITYNIPEKPVTFTEGASYSLVILAGL 134

Query: 161 GVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQR 220
           G+AG A YAVFKELIFEPKEYKIF KAL RIQ D QV  RIG PITGYGQE+RNRAARQR
Sbjct: 135 GIAGLAGYAVFKELIFEPKEYKIFGKALARIQSDSQVTSRIGHPITGYGQETRNRAARQR 194

Query: 221 IPNRVYTDEFGIEHVEVNVCL 241
           IPN+++TDE G+EHVEVN  +
Sbjct: 195 IPNKIWTDEDGVEHVEVNFLI 215

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494116|ref|XP_004159453.1| PREDICTED: uncharacterized LOC101212713 [Cucumis sativus]

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 113/141 (80%), Positives = 125/141 (88%)

Query: 101 CSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGL 160
           C AR  +SK+S++  +T SE KK+ISTVEDPFDAPTYNIPEKPVTF EGASYS IILAGL
Sbjct: 136 CFARFMSSKSSEKRGQTESESKKEISTVEDPFDAPTYNIPEKPVTFAEGASYSFIILAGL 195

Query: 161 GVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQR 220
           GVA AA YAVFKELIF+PKEYKIF+KALKRIQDD QVRVRIGSPITGYGQE+RNRAARQR
Sbjct: 196 GVAAAAGYAVFKELIFQPKEYKIFDKALKRIQDDSQVRVRIGSPITGYGQETRNRAARQR 255

Query: 221 IPNRVYTDEFGIEHVEVNVCL 241
           IPNRV+TDE G+E VEVN  +
Sbjct: 256 IPNRVWTDEDGVERVEVNFYI 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297721981|ref|NP_001173354.1| Os03g0253800 [Oryza sativa Japonica Group] gi|108707218|gb|ABF95013.1| expressed protein [Oryza sativa Japonica Group] gi|255674378|dbj|BAH92082.1| Os03g0253800 [Oryza sativa Japonica Group]

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 95/138 (68%), Positives = 112/138 (81%)

Query: 104 RSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGLGVA 163
           R  AS +++   +   E  KD+ TVEDPFD+PTYNIPEKPVTF EGASYSL+I+AGLG+A
Sbjct: 81  RPSASYSTQASEQNPKEGTKDLKTVEDPFDSPTYNIPEKPVTFAEGASYSLVIVAGLGIA 140

Query: 164 GAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQRIPN 223
             A YAVFKELIFEPKEYKIF KAL R+Q+D QV  +IG P+TGYG ESRNRAARQRIPN
Sbjct: 141 AVAGYAVFKELIFEPKEYKIFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPN 200

Query: 224 RVYTDEFGIEHVEVNVCL 241
           +V+TDE G+EHVEVN  +
Sbjct: 201 KVWTDEDGVEHVEVNFYI 218

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446321|ref|XP_004140920.1| PREDICTED: uncharacterized protein LOC101212713 [Cucumis sativus]

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 113/141 (80%), Positives = 125/141 (88%)

Query: 101 CSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSLIILAGL 160
           C AR  +SK+S++  +T SE KK+ISTVEDPFDAPTYNIPEKPVTF EGASYS IILAGL
Sbjct: 136 CFARFMSSKSSEKRGQTESESKKEISTVEDPFDAPTYNIPEKPVTFAEGASYSFIILAGL 195

Query: 161 GVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQR 220
           GVA AA YAVFKELIF+PKEYKIF+KALKRIQDD QVRVRIGSPITGYGQE+RNRAARQR
Sbjct: 196 GVAAAAGYAVFKELIFQPKEYKIFDKALKRIQDDSQVRVRIGSPITGYGQETRNRAARQR 255

Query: 221 IPNRVYTDEFGIEHVEVNVCL 241
           IPNRV+TDE G+E VEVN  +
Sbjct: 256 IPNRVWTDEDGVERVEVNFYI 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
TAIR|locus:1009023383	269	SD3 "AT4G00026" [Arabidopsis t	0.727	0.713	0.555	1.1e-48
FB|FBgn0031708	236	CG7382 [Drosophila melanogaste	0.367	0.411	0.303	0.00062

TAIR|locus:1009023383 SD3 "AT4G00026" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 110/198 (55%), Positives = 135/198 (68%)

Query:    44 FSTALRSDFARPASADSKQI-SNGVSAHFRGQCNRGYIVNLRLPFQQM--DSRVANSKTY 100
             FS+A +     P S  SK++ SN   +      N G +   R P   +  ++R  N  + 
Sbjct:    25 FSSATQPCSGIPKS--SKRVFSNSFLSKDSTGAN-GLLFRFRNPQASICTEARPKNINSS 81

Query:   101 CSARSFASKTSKQGTETSSEPKKDISTVEDPFDAPTYNIPEKPVTFTEGASYSXXXXXXX 160
                RSFAS+TSK+     ++ KK+++TVEDPFD+PTY+IPEKPVTFTEGASYS       
Sbjct:    82 YFTRSFASRTSKEPGNQQNKAKKEVTTVEDPFDSPTYHIPEKPVTFTEGASYSLVILAGL 141

Query:   161 XXXXXXXXXXFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQR 220
                       FKELIF+PKEYK+F+KALKRIQDDGQVRVRIGSPI GYGQE+RNRAARQR
Sbjct:   142 GVAGAAGYGVFKELIFQPKEYKVFDKALKRIQDDGQVRVRIGSPIKGYGQETRNRAARQR 201

Query:   221 IPNRVYTDEFGIEHVEVN 238
             IPNRV+TDE G+EHVEVN
Sbjct:   202 IPNRVFTDEDGVEHVEVN 219

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0090351 "seedling development" evidence=IMP

FB|FBgn0031708 CG7382 [Drosophila melanogaster (taxid:7227)]

 Score = 108 (43.1 bits), Expect = 0.00062, P = 0.00062
 Identities = 30/99 (30%), Positives = 47/99 (47%)

Query:   139 IPEKPVTFTEGASYSXXXXXXXXXXXXXXXXXFKELIFEPKEYKIFNKALKRIQDDGQVR 198
             I EK    T+ ASY+                 F+EL        I+  AL+R+ +D +V+
Sbjct:    65 IGEKIKENTKTASYTAIIIAGLGVTCVMFFAIFRELFSSESPNNIYADALRRVVEDPRVQ 124

Query:   199 VRIGSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEV 237
               IG+PI G+G+ SR R  RQ + +  Y +  G  H+ +
Sbjct:   125 DAIGAPIKGFGETSR-RGRRQHVAHSSY-ERNGKPHMRM 161


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      264       234   0.00087  113 3  11 22  0.39    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  165 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.62u 0.10s 18.72t   Elapsed:  00:00:01
  Total cpu time:  18.62u 0.10s 18.72t   Elapsed:  00:00:01
  Start:  Mon May 20 17:04:27 2013   End:  Mon May 20 17:04:28 2013

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1G3L1	TIM21_ARATH	No assigned EC number	0.7350	0.5719	0.5613	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00400066 hypothetical protein (304 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	264
pfam08294	145	pfam08294, TIM21, TIM21	3e-15

>gnl|CDD|116878 pfam08294, TIM21, TIM21

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 6/97 (6%)

Query: 146 FTEGASYSLIILAGLGVAGAAAYAVFKELIFEPK-EYKIFNKALKRIQDDGQVRVRIGSP 204
            T    Y +I+L G+GV G   Y +F EL F P  + +IFN+A++ ++++ +VR  +G  
Sbjct: 5   ATTFTFYFIIVLGGVGVTGLVIYLIFSEL-FSPSGDTQIFNRAVELVEENERVRDLLGER 63

Query: 205 ITGYGQESRN---RAARQRIPNRVYTDEFGIEHVEVN 238
           I  YG+E+R       R  +  R Y D+ G EH+ + 
Sbjct: 64  IKAYGEETRRGRWTRNRPIVSTREY-DKDGKEHIRMQ 99

TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane. Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
PF08294	145	TIM21: TIM21; InterPro: IPR013261 TIM21 interacts	100.0
KOG4836	215	consensus Uncharacterized conserved protein [Funct	100.0
PF08695	116	Coa1: Cytochrome oxidase complex assembly protein	98.12

>PF08294 TIM21: TIM21; InterPro: IPR013261 TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane []

Probab=100.00  E-value=8e-42  Score=288.04  Aligned_cols=116  Identities=35%  Similarity=0.524  Sum_probs=59.2

Q ss_pred             CceeeeecceeeeehhhHHHHHHHHHHhhhhhhccCCchhHHHHHHHHHhhcchHHHHHhCCCceeecCCCC-cccccCc
Q 024673          142 KPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESR-NRAARQR  220 (264)
Q Consensus       142 Kv~ratq~ssy~~VIL~Glgltg~v~Y~l~sELFfs~Spt~iFnrAv~rIk~Dprv~~~LG~pIkayGe~t~-nRwrRnr  220 (264)
                      |++|++++++|++|||+|+||+|+++|+|++|||+++|||++||+|+++|++||+|+++||+||+||||+++ +||+|+|
T Consensus         1 Kv~~~~~~~~~~~vil~G~gl~g~v~Y~l~sELFs~~s~~~ifn~A~~~i~~d~~v~~~LG~~ikayGe~~~~~Rw~R~R   80 (145)
T PF08294_consen    1 KVKRATKQTSYFGVILAGLGLTGLVIYALFSELFSPSSPTRIFNRAVDRIKKDPRVQDLLGEPIKAYGEETGRNRWRRNR   80 (145)
T ss_dssp             -------------------------------------HHHHHHHHHHHHHHH-HHHHHHT----EEEE-EEE-SS-EEE-
T ss_pred             ChheehcceeeeEeeeehHHHHHHhHHHHhHHHhCCCCchHHHHHHHHHHhcCHHHHHHhCCCeEEecCCCCCCcccccC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999998 8999988


Q ss_pred             -ccceEEECCCCceEEEEEEEEEE-----EEEEEEEecCC-Cce
Q 024673          221 -IPNRVYTDEFGIEHVEVNVCLAR-----MVLTEIRSRHL-CSF  257 (264)
Q Consensus       221 -Ias~~~~D~dG~EHmrMkF~VeG-----~V~lEm~k~~~-~~f  257 (264)
                       +.++.++|+||+|||+|+|||+|     +||+||+|++. .+|
T Consensus        81 ~~~s~~~~d~~G~eh~~m~F~V~G~~~~G~V~~e~~k~~~~~~~  124 (145)
T PF08294_consen   81 PIVSHREYDKDGREHMRMKFYVEGPRGKGVVHLEMVKDDGSGEY  124 (145)
T ss_dssp             ---EEEEE-TTS-EEEEEEEEEE-SS-EEEEEEEEE--SS-SS-
T ss_pred             CccceEEEcCCCCEEEEEEEEEEeCCCeEEEEEEEEECCCCCCe
Confidence             66667779999999999999995     99999999995 544

; PDB: 2CIU_A.

>KOG4836 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.6e-34  Score=255.05  Aligned_cols=114  Identities=31%  Similarity=0.544  Sum_probs=108.3

Q ss_pred             CCCceeeeecceeeeehhhHHHHHHHHHHhhhhhhccCCchhHHHHHHHHHhhcchHHHHHhCCCceeecCCCCcccccC
Q 024673          140 PEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAARQ  219 (264)
Q Consensus       140 ~EKv~ratq~ssy~~VIL~Glgltg~v~Y~l~sELFfs~Spt~iFnrAv~rIk~Dprv~~~LG~pIkayGe~t~nRwrRn  219 (264)
                      +.||++++.+++|+.+||+|+||+|+++|+|++|||+++||+.|||+||++|++||+|+.++|++||||||+++ |+||+
T Consensus        69 ~gkVke~s~nt~~~~iVI~GiGv~g~~iY~i~~ElFs~~sp~~ifn~Al~~v~~~~~~~~ifG~~iKgfGE~t~-rgRR~  147 (215)
T KOG4836|consen   69 GGKVKEASSNTFYYIIVIAGIGVTGAFIYAIFGELFSSSSPQTIFNRALELVRANPEVQGIFGESIKGFGEETR-RGRRQ  147 (215)
T ss_pred             ccchhhccccceeeeeeeeeccHHHHhHHHHHHHHhcCCCcHHHHHHHHHHHhcChHHhhHhhhhhhhhhhhhc-Ccccc
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999 78899


Q ss_pred             cccceEEECCCCceEEEEEEEEEE-----EEEEEEEecCCC
Q 024673          220 RIPNRVYTDEFGIEHVEVNVCLAR-----MVLTEIRSRHLC  255 (264)
Q Consensus       220 rIas~~~~D~dG~EHmrMkF~VeG-----~V~lEm~k~~~~  255 (264)
                      ||+|..| |+||++||+|+|||+|     +|++|+++.+..
T Consensus       148 hVa~~~y-dk~G~~h~~m~Fhv~g~~~~g~v~~~~k~~~g~  187 (215)
T KOG4836|consen  148 HVAHHKY-DKDGMEHLRMQFHVEGSEPQGHVFARLKEVDGD  187 (215)
T ss_pred             eeeeeee-ecCCceEEEEEEEEEcCCcccchhhhhhccCCC
Confidence            9999999 8999999999999996     899999887643

>PF08695 Coa1: Cytochrome oxidase complex assembly protein 1; InterPro: IPR014807 Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly

Probab=98.12  E-value=2.5e-05  Score=62.47  Aligned_cols=81  Identities=20%  Similarity=0.228  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhhhhhhccCCchhHHHHHHHHHhhcchHHHHHhCC--CceeecCCCCcccccCcccceEEECCCCceEEE
Q 024673          159 GLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGS--PITGYGQESRNRAARQRIPNRVYTDEFGIEHVE  236 (264)
Q Consensus       159 Glgltg~v~Y~l~sELFfs~Spt~iFnrAv~rIk~Dprv~~~LG~--pIkayGe~t~nRwrRnrIas~~~~D~dG~EHmr  236 (264)
                      .+++++.++|.+-.++    ....+|..|++.++.||+++++||+  ||+...-         ++.-+.-+. .|  +..
T Consensus         7 ~~~~~~~~~~~~~~~~----~~s~~y~~al~~l~~~~~v~~~LGe~ipi~~~~~---------~i~G~~~~~-~g--~a~   70 (116)
T PF08695_consen    7 VIGWGVFLFYAINSEK----KSSEYYKEALEQLRSNPEVVEALGENIPIKDGWP---------WISGSINTS-KG--RAD   70 (116)
T ss_pred             eHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhCHHHHHHcCCCCCcccCcc---------cccceeecc-Cc--EEE
Confidence            3344445677777776    5557899999999999999999999  8876552         122222222 34  566


Q ss_pred             EEEEEEE-----EEEEEEEecCCC
Q 024673          237 VNVCLAR-----MVLTEIRSRHLC  255 (264)
Q Consensus       237 MkF~VeG-----~V~lEm~k~~~~  255 (264)
                      +.|-|+|     ++|++..+....
T Consensus        71 ~~~pV~G~k~~G~v~~~a~r~~~~   94 (116)
T PF08695_consen   71 LSFPVKGPKGKGTVYVEATRSGGK   94 (116)
T ss_pred             EEEEEEcCCCcEEEEEEEEecCCC
Confidence            9999995     899999988776

It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence []. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
2ciu_A	127	TIM21P, import inner membrane translocase subunit	2e-09

>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae} Length = 127

 Score = 53.9 bits (129), Expect = 2e-09
 Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 182 KIFNKALKRIQDDGQVR--------VRIGSPITGYGQE-SRNRAARQR-IPNRVYTDEFG 231
           ++FN+A+  ++ +  +R        +     +  YG+  + ++  R R I +    D+ G
Sbjct: 9   QLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWTRNRPIVSTKKLDKEG 68

Query: 232 IEHVEVN 238
             H  + 
Sbjct: 69  RTHHYMR 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
2ciu_A	127	TIM21P, import inner membrane translocase subunit	99.96

>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.6e-30  Score=212.40  Aligned_cols=82  Identities=18%  Similarity=0.345  Sum_probs=74.2

Q ss_pred             ccCCchhHHHHHHHHHhhcchHHHHHh----C----CCceeecCC-CCcccccCc-ccceEEECCCCceEEEEEEEEE--
Q 024673          175 IFEPKEYKIFNKALKRIQDDGQVRVRI----G----SPITGYGQE-SRNRAARQR-IPNRVYTDEFGIEHVEVNVCLA--  242 (264)
Q Consensus       175 Ffs~Spt~iFnrAv~rIk~Dprv~~~L----G----~pIkayGe~-t~nRwrRnr-Ias~~~~D~dG~EHmrMkF~Ve--  242 (264)
                      |+++|+|++||+||++|++||+|+++|    |    +|||||||+ +++||+||| |+|++++|+||+|||+|+||||  
T Consensus         2 ~spss~t~~FnrAv~rIk~Dp~v~~~L~~~~G~~~~~~IkayGe~~t~~rw~R~Rpi~s~~~~d~dG~eH~rm~F~VeG~   81 (127)
T 2ciu_A            2 AMGSGDTQLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWTRNRPIVSTKKLDKEGRTHHYMRFHVESK   81 (127)
T ss_dssp             ---CHHHHHHHHHHHHHHHCHHHHHHTTCCCBTTBCCCCEEEECEEECSSCEEECCCCEEEEECTTSCEEEEEEEEEECS
T ss_pred             cCCCCchhHHHHHHHHHhcCHHHHHHhcccCCCCCCcceEEecccCCCChhhhccccceEEEECCCCCEEEEEEEEEEcC
Confidence            477889999999999999999999999    6    899999999 889999999 9999999999999999999999  


Q ss_pred             ---EEEEEEEEecC-CCc
Q 024673          243 ---RMVLTEIRSRH-LCS  256 (264)
Q Consensus       243 ---G~V~lEm~k~~-~~~  256 (264)
                         |+||+||+|+. ..+
T Consensus        82 ~~~G~V~le~~k~~~~~~   99 (127)
T 2ciu_A           82 KKIALVHLEAKESKQNYQ   99 (127)
T ss_dssp             SCEEEEEEEEECCSSCSS
T ss_pred             CCcEEEEEEEEecCCCCc
Confidence               49999999965 444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00