Citrus Sinensis ID: 024710

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MSESRSQSQNMASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccEEEcccccEEEEccccccccccccccccEEEEEcccccccccEEEEEEccccccccccccccHHHHHHHHHHccccccccccccEEEEEEccccccEEEEEEEEEccccccEEEEEEEEEEccccccEEEEEEcccccHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHEcHHHHHcccccccccccccccccccccccEEEEEccccccHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHccHcccHHHHHccccEEEEcccccEEEEEccccEEEcccccccEEEEEEcccccccccEEEEEEccccccccccccccHHHHHHHHHccccccccccccEEEEEEEccccccEEEEEEEEccccccccEEEEEEEEcccccEcEEEEEEccccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
msesrsqsqnmasisplhtwsqrphhasftafsnnkgtnqyKKQFVFCCKKQEQEDDARTLNRFrieeqdddsrTKRREVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFeisipqdwqlgagepngfksitafypqeassssVSVVITGlgpdftrmesfgKVEAFADTLVSGldrswrrppgvaaklidckaskgfYYIEYtlqnpgesRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Flexible Loop (DISEMBL)
msesrsqsqNMASisplhtwsqrPHHASFTAFSNNKGTNQYKKQFVFCCKKQeqeddartlnrfrieeqdddsrtkRREVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYpqeassssVSVVITGLGPDFTRMESFGKVEAFADTLVSgldrswrrppgvaaKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEeesekygsniekavasfrfi
Low Complexity Region (SEG)
MSESRSQSQNMASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Disordered region (IsUnstruct)
*************************************TNQYKKQFVFCCK****************************EVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQE****SVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVE********************
Disordered Region (DISOPRED)
**************SPLHTWSQRP******************************************************EVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVS*******************KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Disordered Region (DISEMBL)
*************ISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Disordered Region (DISPRO)
***********ASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSESRSQSQNMASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q9S720	247	PsbP domain-containing pr	yes	no	0.916	0.979	0.613	1e-81

>sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana GN=PPD3 PE=1 SV=2

 Score =  303 bits (775), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 159/259 (61%), Positives = 186/259 (71%), Gaps = 17/259 (6%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQED--DARTLNRFRIEE 68
           MA+ISP   W   P      +FSN + T    ++   C          D+    + RI  
Sbjct: 1   MAAISP---WLSSPQ-----SFSNPRVTITDSRR---CSSISAAISVLDSSNEEQHRISS 49

Query: 69  QDDDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQL 125
           +D     KRR+VM Q+A +    P  +S A A   A+E  RVYTDE NKFEISIPQDWQ+
Sbjct: 50  RDHVG-MKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQV 108

Query: 126 GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWR 185
           G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+
Sbjct: 109 GQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQ 168

Query: 186 RPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEE 245
           +P GV AKLID +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +E
Sbjct: 169 KPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDE 228

Query: 246 ESEKYGSNIEKAVASFRFI 264
           ES +  S I+K V SFRFI
Sbjct: 229 ESAEQSSKIQKTVKSFRFI 247

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
255539324	264	conserved hypothetical protein [Ricinus	0.916	0.916	0.652	5e-88
225457650	253	PREDICTED: psbP domain-containing protei	0.928	0.968	0.618	2e-84
449458059	257	PREDICTED: psbP domain-containing protei	0.727	0.747	0.734	3e-81
188509930	274	unknown predicted protein [Gossypioides	0.719	0.693	0.753	6e-81
147809819	247	hypothetical protein VITISV_030793 [Viti	0.901	0.963	0.607	1e-80
21537211	247	thylakoid lumen protein, chloroplast pre	0.916	0.979	0.613	6e-80
18411110	247	PsbP domain-containing protein 3 [Arabid	0.916	0.979	0.613	7e-80
224083366	193	predicted protein [Populus trichocarpa]	0.689	0.943	0.762	1e-79
449522159	188	PREDICTED: psbP domain-containing protei	0.696	0.978	0.75	2e-79
297839519	225	hypothetical protein ARALYDRAFT_476802 [	0.784	0.92	0.693	4e-78

>gi|255539324|ref|XP_002510727.1| conserved hypothetical protein [Ricinus communis] gi|223551428|gb|EEF52914.1| conserved hypothetical protein [Ricinus communis]

 Score =  330 bits (845), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 165/253 (65%), Positives = 198/253 (78%), Gaps = 11/253 (4%)

Query: 15  SPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDAR--TLNRFRIEEQDDD 72
           +PLH    +P+  +F + S +   N  +KQ + CC     ++D       RFR++E    
Sbjct: 20  TPLHLL--KPN-LNFLSASPSFRFNSCRKQHLPCCTNSFPDEDQHQPLFCRFRLQEP--- 73

Query: 73  SRTKRREVMFQLAFT-ACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPN 131
               RRE +F +AFT   +FP ++S A A  +D R+YTD+ NKF+ISIPQDW++GAGEPN
Sbjct: 74  --YGRREALFSVAFTTGFTFPGLISNAFAEIDDFRLYTDDANKFQISIPQDWRVGAGEPN 131

Query: 132 GFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVA 191
           GFKS+TAFYP+EAS SSVSVVITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+RPPGVA
Sbjct: 132 GFKSVTAFYPEEASGSSVSVVITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQRPPGVA 191

Query: 192 AKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYG 251
           AKLIDCKA+KG YYIEYTLQNPGE RKHLFSA+GMA NGWYNRLYTVTGQFVEEESE YG
Sbjct: 192 AKLIDCKATKGIYYIEYTLQNPGEGRKHLFSALGMAFNGWYNRLYTVTGQFVEEESENYG 251

Query: 252 SNIEKAVASFRFI 264
           S ++K V+SF+FI
Sbjct: 252 SKVQKVVSSFKFI 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457650|ref|XP_002273332.1| PREDICTED: psbP domain-containing protein 3, chloroplastic [Vitis vinifera] gi|297745601|emb|CBI40766.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 162/262 (61%), Positives = 198/262 (75%), Gaps = 17/262 (6%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQY-----KKQFVFCCKKQEQEDDARTLNRFR 65
           MA   PL     R     F+A+S+ KG         KKQ V  CK + +E++  +   F 
Sbjct: 1   MALYFPLPL---RSGSCDFSAYSSKKGYGSRTGKCGKKQRVVFCKNENKEEEKTS---FG 54

Query: 66  IEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQD 122
           I+EQ    R   REV+ Q+ F+  S  AIV  ALA     ED +VY+DE+NKF+I IPQD
Sbjct: 55  IKEQHGGGR---REVVLQMVFSTISLQAIVPNALADTEVPEDFKVYSDEVNKFKIQIPQD 111

Query: 123 WQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR 182
           WQ+G+GEP+GFKS+TAFYP+EAS S+VSVVITGLG DFTR+ESFGKV+AFA+ LV+GLDR
Sbjct: 112 WQVGSGEPSGFKSVTAFYPEEASGSNVSVVITGLGADFTRLESFGKVDAFAENLVNGLDR 171

Query: 183 SWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQF 242
           SW+RPPG+AAKLIDC+A+ GFYYIEY LQNPGESR+HLFSA+GMA+NGWYNRLYTVTGQ+
Sbjct: 172 SWQRPPGIAAKLIDCRAANGFYYIEYWLQNPGESRRHLFSAVGMANNGWYNRLYTVTGQY 231

Query: 243 VEEESEKYGSNIEKAVASFRFI 264
           +EEESEK+ S IEK VASFRFI
Sbjct: 232 LEEESEKFSSKIEKVVASFRFI 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458059|ref|XP_004146765.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like [Cucumis sativus]

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 144/196 (73%), Positives = 164/196 (83%), Gaps = 4/196 (2%)

Query: 73  SRTKRREVMFQLAFTACSFPAIVSYALAAN----EDLRVYTDELNKFEISIPQDWQLGAG 128
           S   RRE+M  + FTA SF  + S ALA +    ED R YTDE NKF + IPQDWQ+G G
Sbjct: 62  SGVNRREIMLGIGFTAFSFQEVGSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNG 121

Query: 129 EPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPP 188
           EPNGFKS+TAF+PQE S+S+VSVVI+GLGPD+TRMESFGKVE FADTLVSGLDRSW+RPP
Sbjct: 122 EPNGFKSVTAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPP 181

Query: 189 GVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESE 248
           GVAAKLIDC++SKG YYIEYTLQNPGESRKHL+SAIGM+SNGWYNRLYT+TGQ+ +EESE
Sbjct: 182 GVAAKLIDCRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYNRLYTITGQYADEESE 241

Query: 249 KYGSNIEKAVASFRFI 264
            Y S IEK V SF FI
Sbjct: 242 SYSSKIEKVVNSFAFI 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188509930|gb|ACD56619.1| unknown predicted protein [Gossypioides kirkii]

 Score =  306 bits (784), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 150/199 (75%), Positives = 169/199 (84%), Gaps = 9/199 (4%)

Query: 67  EEQDDD---SRTKRREVMFQLAFTACSFP-AIVSYALAANE-----DLRVYTDELNKFEI 117
           E ++DD   + T+RR+ + Q    A SFP  I+S A+A  E     D RVYTDE NKF+I
Sbjct: 46  EMKEDDGHATSTRRRQFILQAPLIAFSFPQLIMSTAIAVAEIDVPQDFRVYTDEQNKFKI 105

Query: 118 SIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLV 177
            IPQDWQ+GAGEPN FKSITAFYP+E ++S+VSV ITGLGPDFTRMESFGKV+AFADTLV
Sbjct: 106 FIPQDWQVGAGEPNNFKSITAFYPEEEANSNVSVAITGLGPDFTRMESFGKVDAFADTLV 165

Query: 178 SGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYT 237
           SGLDRSW+RPPGVAAKLIDCKA+ GFYYIEYTLQNPGESR+HLFSAIGMASNGWYNRLYT
Sbjct: 166 SGLDRSWQRPPGVAAKLIDCKAANGFYYIEYTLQNPGESRRHLFSAIGMASNGWYNRLYT 225

Query: 238 VTGQFVEEESEKYGSNIEK 256
           VTGQFVEEE+EKYGS IEK
Sbjct: 226 VTGQFVEEEAEKYGSRIEK 244

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147809819|emb|CAN64877.1| hypothetical protein VITISV_030793 [Vitis vinifera]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 155/255 (60%), Positives = 191/255 (74%), Gaps = 17/255 (6%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQY-----KKQFVFCCKKQEQEDDARTLNRFR 65
           MA   PL     R     F+A+S+ KG         KKQ V  CK + +E++  +   F 
Sbjct: 1   MALYFPLPL---RSGSCDFSAYSSKKGCGSRTGKCGKKQRVVFCKNENKEEEKTS---FG 54

Query: 66  IEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQD 122
           I+EQ    R   REV+ Q+ F+  S  AIV  ALA     ED +VY+DE+NKF+I IPQD
Sbjct: 55  IKEQHGGGR---REVVLQIVFSTISLQAIVPNALADTEVPEDFKVYSDEVNKFKIQIPQD 111

Query: 123 WQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR 182
           WQ+G+GEP+GFKS+TAFYP+EAS S+VSVVITGLG DFTR+ESFGKV+AFA+ LV+GLDR
Sbjct: 112 WQVGSGEPSGFKSVTAFYPEEASGSNVSVVITGLGADFTRLESFGKVDAFAENLVNGLDR 171

Query: 183 SWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQF 242
           SW+RPPG+AAKLIDC+A+ GFYYIEY LQNPGESR+HLFSA+GMA+NGWYNRLYTVTGQ+
Sbjct: 172 SWQRPPGIAAKLIDCRAANGFYYIEYWLQNPGESRRHLFSAVGMANNGWYNRLYTVTGQY 231

Query: 243 VEEESEKYGSNIEKA 257
           +EEESEK+ S IEK 
Sbjct: 232 LEEESEKFSSKIEKV 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537211|gb|AAM61552.1| thylakoid lumen protein, chloroplast precursor [Arabidopsis thaliana]

 Score =  303 bits (775), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 159/259 (61%), Positives = 186/259 (71%), Gaps = 17/259 (6%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQED--DARTLNRFRIEE 68
           MA+ISP   W   P      +FSN + T    ++   C          D+    + RI  
Sbjct: 1   MAAISP---WLSSPQ-----SFSNPRVTITDSRR---CSSISAAISVLDSSNEEQHRISS 49

Query: 69  QDDDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQL 125
           +D     KRR+VM Q+A +    P  +S A A   A+E  RVYTDE NKFEISIPQDWQ+
Sbjct: 50  RDHVG-MKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQV 108

Query: 126 GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWR 185
           G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+
Sbjct: 109 GQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQ 168

Query: 186 RPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEE 245
           +P GV AKLID +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +E
Sbjct: 169 KPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDE 228

Query: 246 ESEKYGSNIEKAVASFRFI 264
           ES +  S I+K V SFRFI
Sbjct: 229 ESSEQSSKIQKTVKSFRFI 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411110|ref|NP_565131.1| PsbP domain-containing protein 3 [Arabidopsis thaliana] gi|18203439|sp|Q9S720.2|PPD3_ARATH RecName: Full=PsbP domain-containing protein 3, chloroplastic; AltName: Full=OEC23-like protein 2; Flags: Precursor gi|32815945|gb|AAP88357.1| At1g76450 [Arabidopsis thaliana] gi|110742837|dbj|BAE99317.1| hypothetical protein [Arabidopsis thaliana] gi|332197723|gb|AEE35844.1| PsbP domain-containing protein 3 [Arabidopsis thaliana]

 Score =  303 bits (775), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 159/259 (61%), Positives = 186/259 (71%), Gaps = 17/259 (6%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQED--DARTLNRFRIEE 68
           MA+ISP   W   P      +FSN + T    ++   C          D+    + RI  
Sbjct: 1   MAAISP---WLSSPQ-----SFSNPRVTITDSRR---CSSISAAISVLDSSNEEQHRISS 49

Query: 69  QDDDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQL 125
           +D     KRR+VM Q+A +    P  +S A A   A+E  RVYTDE NKFEISIPQDWQ+
Sbjct: 50  RDHVG-MKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQV 108

Query: 126 GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWR 185
           G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+
Sbjct: 109 GQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQ 168

Query: 186 RPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEE 245
           +P GV AKLID +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +E
Sbjct: 169 KPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDE 228

Query: 246 ESEKYGSNIEKAVASFRFI 264
           ES +  S I+K V SFRFI
Sbjct: 229 ESAEQSSKIQKTVKSFRFI 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083366|ref|XP_002306998.1| predicted protein [Populus trichocarpa] gi|222856447|gb|EEE93994.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 141/185 (76%), Positives = 163/185 (88%), Gaps = 3/185 (1%)

Query: 75  TKRREVMFQLAFTACSFPAIVSYALAAN---EDLRVYTDELNKFEISIPQDWQLGAGEPN 131
           TKRRE +F + FTA +FPAI S ALAA    ED RVYTD+ NKF+ISIPQ WQ+GAGEP+
Sbjct: 2   TKRREALFNMVFTAFTFPAIASTALAATGVAEDSRVYTDDANKFKISIPQGWQVGAGEPS 61

Query: 132 GFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVA 191
           G+KS+TAFYP+EAS+SSVSVVITGLGPDFTR+ESFGKV+AFA+TLV GLDRSW+RPPGVA
Sbjct: 62  GYKSVTAFYPEEASNSSVSVVITGLGPDFTRLESFGKVDAFAETLVGGLDRSWQRPPGVA 121

Query: 192 AKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYG 251
           AKLID KA+ G YYIEYTLQNPGESR+HL SA+G+  NGWYNRLYTVTGQFV+EESEK+G
Sbjct: 122 AKLIDSKAANGLYYIEYTLQNPGESRRHLLSALGVTFNGWYNRLYTVTGQFVDEESEKFG 181

Query: 252 SNIEK 256
           + I K
Sbjct: 182 TEIRK 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522159|ref|XP_004168095.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like [Cucumis sativus]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 141/188 (75%), Positives = 160/188 (85%), Gaps = 4/188 (2%)

Query: 81  MFQLAFTACSFPAIVSYALAAN----EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSI 136
           M  + FTA SF  +VS ALA +    ED R YTDE NKF + IPQDWQ+G GEPNGFKS+
Sbjct: 1   MLGIGFTAFSFQEVVSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNGEPNGFKSV 60

Query: 137 TAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID 196
           TAF+PQE S+S+VSVVI+GLGPD+TRMESFGKVE FADTLVSGLDRSW+RPPGVAAKLID
Sbjct: 61  TAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLID 120

Query: 197 CKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 256
           C++SKG YYIEYTLQNPGESRKHL+SAIGM+SNGWYNRLYT+TGQ+ +EESE Y S IEK
Sbjct: 121 CRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYNRLYTITGQYADEESESYSSKIEK 180

Query: 257 AVASFRFI 264
            V SF FI
Sbjct: 181 VVNSFAFI 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839519|ref|XP_002887641.1| hypothetical protein ARALYDRAFT_476802 [Arabidopsis lyrata subsp. lyrata] gi|297333482|gb|EFH63900.1| hypothetical protein ARALYDRAFT_476802 [Arabidopsis lyrata subsp. lyrata]

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 147/212 (69%), Positives = 168/212 (79%), Gaps = 5/212 (2%)

Query: 57  DARTLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELN 113
           D+    + RI  +D     KRRE M Q+A +    P  VS A A   A+E  RVYTDE N
Sbjct: 15  DSSNEEQHRISSRDHVG-IKRREAMLQIASSVFFLPLAVSPAFAETNASEAFRVYTDEAN 73

Query: 114 KFEISIPQ-DWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAF 172
           KFEISIPQ DWQ+G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAF
Sbjct: 74  KFEISIPQEDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAF 133

Query: 173 ADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWY 232
           A+TLVSGLDRSW++P GV AKLID ++SKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWY
Sbjct: 134 AETLVSGLDRSWQKPAGVTAKLIDSRSSKGFYYIEYTLQNPGEARKHLYSAIGMATNGWY 193

Query: 233 NRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 264
           NRLYTVTGQF +EES +  S I+K V SFRFI
Sbjct: 194 NRLYTVTGQFTDEESAEQSSKIQKTVKSFRFI 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
TAIR|locus:2011711	247	AT1G76450 [Arabidopsis thalian	0.924	0.987	0.614	1.9e-74

TAIR|locus:2011711 AT1G76450 [Arabidopsis thaliana (taxid:3702)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 158/257 (61%), Positives = 185/257 (71%)

Query:    11 MASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTLNRFRIEEQD 70
             MA+ISP   W   P      +FSN + T    ++           D +    + RI  +D
Sbjct:     1 MAAISP---WLSSPQ-----SFSNPRVTITDSRRCSSISAAISVLDSSNE-EQHRISSRD 51

Query:    71 DDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQLGA 127
                  KRR+VM Q+A +    P  +S A A   A+E  RVYTDE NKFEISIPQDWQ+G 
Sbjct:    52 HVGM-KRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQ 110

Query:   128 GEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRP 187
              EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P
Sbjct:   111 AEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKP 170

Query:   188 PGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEES 247
              GV AKLID +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES
Sbjct:   171 VGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEES 230

Query:   248 EKYGSNIEKAVASFRFI 264
              +  S I+K V SFRFI
Sbjct:   231 AEQSSKIQKTVKSFRFI 247


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.130   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      264       264   0.00092  114 3  11 22  0.48    33
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  203 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.44u 0.14s 24.58t   Elapsed:  00:00:01
  Total cpu time:  24.44u 0.14s 24.58t   Elapsed:  00:00:01
  Start:  Mon May 20 17:56:19 2013   End:  Mon May 20 17:56:20 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S720	PPD3_ARATH	No assigned EC number	0.6138	0.9166	0.9797	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G76450	oxygen-evolving complex-related; oxygen-evolving complex-related; LOCATED IN- thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro-IPR016124); Has 30 Blast hits to 30 proteins in 13 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (247 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G11450	oxygen-evolving complex-related; oxygen-evolving complex-related; FUNCTIONS IN- calcium ion bin [...] (297 aa)				•		•	•		0.969
	AT3G56650	thylakoid lumenal 20 kDa protein; thylakoid lumenal 20 kDa protein; LOCATED IN- thylakoid, thyl [...] (262 aa)				•		•	•		0.958
	PPL1	PPL1 (PsbP-like protein 1); calcium ion binding; PsbP-like protein 1 (PPL1); FUNCTIONS IN- calc [...] (230 aa)				•		•	•		0.925
	AT1G77090	thylakoid lumenal 29.8 kDa protein; thylakoid lumenal 29.8 kDa protein; FUNCTIONS IN- calcium i [...] (260 aa)				•		•	•		0.880
	PPL2	PPL2 (PsbP-like protein 2); calcium ion binding; PsbP-like protein 2 (PPL2); FUNCTIONS IN- calc [...] (238 aa)				•		•	•		0.864
	MFP1	MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1); DNA binding; encodes a DNA-binding protein that bin [...] (726 aa)				•					0.796
	AT2G43560	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein; immunophilin / FKB [...] (223 aa)				•					0.786
	PSB28	PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN); Similar to PsbW subunit of photosystem II [...] (183 aa)				•		•			0.784
	ATPRX_Q	ATPRX Q; antioxidant/ peroxiredoxin; encodes periredoxin Q which decomposes peroxides and plays [...] (216 aa)				•					0.758
	AT4G02530	chloroplast thylakoid lumen protein; chloroplast thylakoid lumen protein; FUNCTIONS IN- molecul [...] (216 aa)				•					0.754

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	264
pfam01789	163	pfam01789, PsbP, PsbP	4e-07

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 17/126 (13%)

Query: 145 SSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSG-LDRSWRRPPGV--AAKLIDCKA-- 199
           S  +VSVVI+ +    + +E  G  E   + L+ G L      P G    A+L++     
Sbjct: 47  SDENVSVVISPVDKKKS-LEDLGSPEEVGERLLRGVLA-----PEGSGREAELLEASERE 100

Query: 200 --SKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 257
              K +Y +EY ++      +H  + +     G   +LYT+  Q  E+   K     E+ 
Sbjct: 101 VDGKTYYDLEYLVRLADGGDRHELATVT-VDRG---KLYTLAAQTNEKRWFKVKKLFERV 156

Query: 258 VASFRF 263
           V SF  
Sbjct: 157 VDSFSV 162

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PLN00066	262	PsbP domain-containing protein 4; Provisional	100.0
PLN03152	241	hypothetical protein; Provisional	99.95
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	97.55
PF10738	175	Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR	94.65
PF12712	153	DUF3805: Domain of unknown function (DUF3805); Int	92.7
COG5435	147	Uncharacterized conserved protein [Function unknow	91.96

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=2.8e-47  Score=347.33  Aligned_cols=182  Identities=19%  Similarity=0.297  Sum_probs=154.3

Q ss_pred             ccchhHHHHHHHH--HHhhhcccchhhhhhccCCceeeeeCCCceEEEccCCCccCC--CCCCCcceEEEeccCCCCCce
Q 024710           73 SRTKRREVMFQLA--FTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGA--GEPNGFKSITAFYPQEASSSS  148 (264)
Q Consensus        73 ~~~~RR~aLl~i~--~a~~a~~~~~s~A~A~~~gf~~y~D~~dGYsf~yPs~W~~~~--G~~~g~k~Vv~F~p~~~~~eN  148 (264)
                      +++.||++|+..+  +.++...+..++|+|+..||++|+|+.|||+|+||.||+..+  |+|      ++|+|+++.+||
T Consensus        75 ~~~~rr~~~~~~l~~~~~~~s~~~~~~a~a~~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~D------VvFrD~Ie~~EN  148 (286)
T PLN00059         75 CAVGRRKSMMMGLLMSGLIVSEANLPTAFASIPVFREYIDTFDGYSFKYPQNWIQVRGAGAD------IFFRDPVVLDEN  148 (286)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHhhcCchhhcCCcccceeEcCCCCeEEeCCCCCeEeccCCCc------eEEeccCccccc
Confidence            8899999966333  333233333456788888999999999999999999999543  444      789999999999


Q ss_pred             eEEEEecCCC-CccccccCCCHHHHHHHHHhcccccC---CCCCCCeeeEEEeeec---Cc--eEEEEEEEECC------
Q 024710          149 VSVVITGLGP-DFTRMESFGKVEAFADTLVSGLDRSW---RRPPGVAAKLIDCKAS---KG--FYYIEYTLQNP------  213 (264)
Q Consensus       149 VSVvITpv~~-d~~sL~dfGsPeeva~~Lv~~l~~s~---~~~~~~~A~LldA~sr---~g--yY~~EY~v~~p------  213 (264)
                      |||+|+|+++ ++++|+|||+|+|||++|+++++.++   +.+++++++||+|.+|   +|  ||+|||.++.+      
T Consensus       149 VSV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~  228 (286)
T PLN00059        149 LSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNEL  228 (286)
T ss_pred             eEEEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCcccccc
Confidence            9999998864 67999999999999999999997543   3456899999999988   23  99999999996      


Q ss_pred             ----------CCCceeEEEEEEEecCCccceeEEEEcccCchhhHHHHHHHHHhhcceeeC
Q 024710          214 ----------GESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  264 (264)
Q Consensus       214 ----------~e~~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~~~~l~~vvdSF~v~  264 (264)
                                .+|.||+|++|+|.| |   |||||++|+||+||+|+++.|++||+||+|+
T Consensus       229 ~~~~qdr~~~~~w~RH~LA~v~V~n-G---kLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~  285 (286)
T PLN00059        229 AVMPQDRVARLEWNRRYLAVLGVEN-D---RLYSIRLQTPEKVFLEEEKDLRRVMDSFRVE  285 (286)
T ss_pred             cccccccccccccceeeEEEEEEeC-C---EEEEEEcCCcHHHHHHHHHHHHHHHhheeec
Confidence                      256999999999985 3   9999999999999999999999999999985

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=3.6e-45  Score=332.97  Aligned_cols=190  Identities=24%  Similarity=0.316  Sum_probs=152.6

Q ss_pred             cccccccccccccccchhHHHHHHHHHHhhhcccchhhhhh-------------ccCCceeeeeCCCceEEEccCCCccC
Q 024710           60 TLNRFRIEEQDDDSRTKRREVMFQLAFTACSFPAIVSYALA-------------ANEDLRVYTDELNKFEISIPQDWQLG  126 (264)
Q Consensus        60 ~~~~~~~~~~~~~~~~~RR~aLl~i~~a~~a~~~~~s~A~A-------------~~~gf~~y~D~~dGYsf~yPs~W~~~  126 (264)
                      ++||++.++.   ..++||.+|+++++++ ++++.+.+|.|             ..+||.+|+  +|||+|+||++|+++
T Consensus        38 ~~~~~~~~~~---~~~srr~~l~~~~ga~-a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~--~dgY~FlyP~~W~~~  111 (260)
T PLN00042         38 VVCRAQEEDN---SAVSRRAALALLAGAA-AAGAKVSPANAAYGESANVFGKPKTNTGFLPYN--GDGFKLLVPSKWNPS  111 (260)
T ss_pred             eeeecccccc---ccccHHHHHHHHHHHH-HhhcccCchhhhhcchhhccCCCCCCCCCeEee--CCCeEEecCCCCccc
Confidence            6788875544   6799999999888875 44555555422             136999998  699999999999955


Q ss_pred             -CCCCCCcceEEEeccCCCCCceeEEEEecCCCCccccccCCCHHHHHHHHHhcccccCCCC---------C--CCeeeE
Q 024710          127 -AGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRP---------P--GVAAKL  194 (264)
Q Consensus       127 -~G~~~g~k~Vv~F~p~~~~~eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~l~~s~~~~---------~--~~~A~L  194 (264)
                       +.+.+|.  +++|+|+++.++||||+|+|+  ++++|+|||+|+||++++.+.|.+....+         |  .++|+|
T Consensus       112 ke~~~~G~--dv~f~D~~~~~eNVSV~Ispt--~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~L  187 (260)
T PLN00042        112 KEREFPGQ--VLRFEDNFDATSNLSVMVTPT--DKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAV  187 (260)
T ss_pred             cccccCCc--eEEeeccccccccEEEEEecC--CcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeE
Confidence             3344565  588999999999999999998  67899999999997777665554321121         2  347899


Q ss_pred             EEeeec----CceEEEEEEEECCC--CCceeEEEEEEEecCCccceeEEEEcccCchhhHHH-HHHHHHhhcceee
Q 024710          195 IDCKAS----KGFYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY-GSNIEKAVASFRF  263 (264)
Q Consensus       195 ldA~sr----~gyY~~EY~v~~p~--e~~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~-~~~l~~vvdSF~v  263 (264)
                      |++++|    +.||+|||.++.++  ++.||+|++++|. ||   |||||++|+||+||.|+ ++.|+.|++||+|
T Consensus       188 leas~re~dGk~YY~lE~~~~~ad~d~~~RH~LatatV~-~G---kLYtl~aqa~EkRW~K~~~k~l~~v~~SFsV  259 (260)
T PLN00042        188 LESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVS-DG---KLYICKAQAGDKRWFKGARKFVEGAASSFSV  259 (260)
T ss_pred             EEeeeEEeCCeEEEEEEEEEecCCCCCCCceEEEEEEEE-CC---EEEEEEecCchhhhhHHHHHHHHHHHhceec
Confidence            999998    34999999999875  5789999999997 44   99999999999999998 6789999999997

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=1.2e-39  Score=279.40  Aligned_cols=152  Identities=32%  Similarity=0.503  Sum_probs=130.4

Q ss_pred             ccCCceeeeeCCCceEEEccCCCccCCCCCCCcceEEEeccCCCCCceeEEEEecCCCCccccccCCCHHHHHHHHHhcc
Q 024710          101 ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL  180 (264)
Q Consensus       101 ~~~gf~~y~D~~dGYsf~yPs~W~~~~G~~~g~k~Vv~F~p~~~~~eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~l  180 (264)
                      ..+||++|.|+.+||+|+||++|+..++  +|.  .++|+|+.+.++||+|+|+|++.++ +|+|||+|++||++|+...
T Consensus        19 ~~~~~~~y~d~~~~y~f~~P~gW~~~~~--~G~--~v~f~d~~~~~~nvsV~v~p~~~~~-sl~~lGs~~~va~~l~~~~   93 (175)
T PF01789_consen   19 ASTGFQPYTDSDDGYSFLYPSGWEEVDV--SGA--DVVFRDPIDADENVSVVVSPVPKDF-SLEDLGSPEEVAERLLNGE   93 (175)
T ss_dssp             --SSEEEEEECTTTEEEEEETTEEEEES--TTE--EEEEEETTETTSEEEEEEEE-STS--SGGGG-SHHHHHHHHHHHC
T ss_pred             CCCCceEEEcCCCCEEEECCCCCeecCC--CCe--EEEEECcccccceEEEEEEecCCcC-chhhcCCHHHHHHHHhhhh
Confidence            3479999999999999999999986544  443  4789999999999999999998776 9999999999999999987


Q ss_pred             cccCCCCCCCeeeEEEeeec--C--ceEEEEEEEECCCCCceeEEEEEEEecCCccceeEEEEcccCchhhHHHHHHHHH
Q 024710          181 DRSWRRPPGVAAKLIDCKAS--K--GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK  256 (264)
Q Consensus       181 ~~s~~~~~~~~A~LldA~sr--~--gyY~~EY~v~~p~e~~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~~~~l~~  256 (264)
                      .++  ...++.++||++.++  +  .||+|||.++.+++++||.|++++|. ||   |||||++|++|++|+|+++.|++
T Consensus        94 ~~~--~~~~~~a~li~a~~~~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~-~g---~lY~l~~~a~e~~w~k~~~~l~~  167 (175)
T PF01789_consen   94 LAS--PGSGREAELISASEREVDGKTYYEYEYTVQSPNEGRRHNLAVVTVK-NG---KLYTLTAQAPESRWDKVEPKLRK  167 (175)
T ss_dssp             CCH--CTSSEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEE-TT---EEEEEEEEEEHHHHHTCHHHHHH
T ss_pred             ccc--ccCCcceEEEEeeeeecCCccEEEEEEEeccCCCcccEEEEEEEEE-CC---EEEEEEEEcCHHHHHHHHHHHHH
Confidence            632  222499999999998  3  49999999999987789999999997 44   99999999999999999999999


Q ss_pred             hhcceee
Q 024710          257 AVASFRF  263 (264)
Q Consensus       257 vvdSF~v  263 (264)
                      |++||+|
T Consensus       168 iv~SF~v  174 (175)
T PF01789_consen  168 IVDSFRV  174 (175)
T ss_dssp             HHHC-EE
T ss_pred             HHhcEEe
Confidence            9999998

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=2.2e-34  Score=262.24  Aligned_cols=177  Identities=14%  Similarity=0.194  Sum_probs=138.2

Q ss_pred             ccchhHHHHHHHHHHhh-hcccchhhhhh-------------ccCCceeeee-----------CCCceEEEccCCCccCC
Q 024710           73 SRTKRREVMFQLAFTAC-SFPAIVSYALA-------------ANEDLRVYTD-----------ELNKFEISIPQDWQLGA  127 (264)
Q Consensus        73 ~~~~RR~aLl~i~~a~~-a~~~~~s~A~A-------------~~~gf~~y~D-----------~~dGYsf~yPs~W~~~~  127 (264)
                      ....||++|.+++++.+ .... ..++.|             ...||--|.-           .-.||+|+||.||+...
T Consensus        41 ~~~~rr~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~  119 (263)
T PLN00067         41 VVIHRRELLLGLALAPLILIAP-EPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTR  119 (263)
T ss_pred             chhHHHHHHhhhhhhhhhhccC-CchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCcc
Confidence            34789999999988631 2221 112222             1237766652           34699999999999331


Q ss_pred             ------C-------CCCCcceEEEeccCCCCCceeEEEEecCC----CCccccccCCCHHHHHHHHHhcccccCCCCCCC
Q 024710          128 ------G-------EPNGFKSITAFYPQEASSSSVSVVITGLG----PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGV  190 (264)
Q Consensus       128 ------G-------~~~g~k~Vv~F~p~~~~~eNVSVvITpv~----~d~~sL~dfGsPeeva~~Lv~~l~~s~~~~~~~  190 (264)
                            |       +.|+.  .++|+|+  .++||+|||+|+.    .+.++|+|||+|++|+++|.+.+.    .++++
T Consensus       120 Vs~~~sGnycqp~c~~p~~--dv~F~D~--~dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~----g~~~~  191 (263)
T PLN00067        120 VANILSGNYCQPKCAEPWV--EVKFEDE--KQGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVT----GNSYD  191 (263)
T ss_pred             ccccccCccccccccCCCc--eEEEeCC--CCCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhh----cCCCC
Confidence                  2       12233  3789994  4779999999983    234799999999999999998876    56788


Q ss_pred             eeeEEEeeec----CceEEEEEEEECCCCCceeEEEEEEEecCCccceeEEEEcccCchhhHHHHHHHHHhhcceee
Q 024710          191 AAKLIDCKAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  263 (264)
Q Consensus       191 ~A~LldA~sr----~gyY~~EY~v~~p~e~~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~~~~l~~vvdSF~v  263 (264)
                      .++||+++++    +.||+|||.+..++. .||+|++++|. +   ||||||++|++|+||.|+++.|++|++||+|
T Consensus       192 ~~eLLeAs~re~dGktYY~~E~~tp~a~~-gRHnLataTV~-~---GkLYtf~asanEkRW~K~k~~l~~V~dSFsV  263 (263)
T PLN00067        192 PDELLETSVEKIGDQTYYKYVLETPFALT-GSHNLAKATAK-G---NTVVLFVVSASDKQWQSSEKTLKAILDSFQA  263 (263)
T ss_pred             CcceEEeeeEeeCCeEEEEEEEEecCCCC-CceEEEEEEEE-C---CEEEEEEecCCHHHHHHHHHHHHHHHHhccC
Confidence            9999999999    349999999999984 79999999995 4   4999999999999999999999999999986

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=100.00  E-value=1.3e-32  Score=251.69  Aligned_cols=174  Identities=18%  Similarity=0.262  Sum_probs=133.3

Q ss_pred             ccchhHHHHHHHHHHh-hhcccchhhhhh----------------ccCCceeeeeCC-------------CceEEEccCC
Q 024710           73 SRTKRREVMFQLAFTA-CSFPAIVSYALA----------------ANEDLRVYTDEL-------------NKFEISIPQD  122 (264)
Q Consensus        73 ~~~~RR~aLl~i~~a~-~a~~~~~s~A~A----------------~~~gf~~y~D~~-------------dGYsf~yPs~  122 (264)
                      ..++||.+|+.+++++ +++.+.+..+.|                ...||++|.-+.             ..|+|+||.|
T Consensus        43 ~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~G  122 (262)
T PLN00066         43 TAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQG  122 (262)
T ss_pred             chhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCCC
Confidence            4579999999776652 122222222222                124899998654             5799999999


Q ss_pred             CccC---CCCCCCcceEEEeccCCCCCceeEEEEecCC------CCccccccCCCHHHHHHHHHhcccccCCCCCCCeee
Q 024710          123 WQLG---AGEPNGFKSITAFYPQEASSSSVSVVITGLG------PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAK  193 (264)
Q Consensus       123 W~~~---~G~~~g~k~Vv~F~p~~~~~eNVSVvITpv~------~d~~sL~dfGsPeeva~~Lv~~l~~s~~~~~~~~A~  193 (264)
                      |...   ..+..|..  +.++.....++||+|+|+|+.      .++++|+|||+|++|+++|.+.++    .++.++++
T Consensus       123 W~ev~VS~~d~gg~~--vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~----g~~~~e~e  196 (262)
T PLN00066        123 WEEVPVSIADLGGTE--IDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELI----GEPVEEGK  196 (262)
T ss_pred             CeEeecccccCCCCc--eEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhc----CCCccccc
Confidence            9932   21112222  233444478999999999985      266899999999999999998865    55678899


Q ss_pred             EEEeeec----CceEEEEEEEECCCCCceeEEEEEEEecCCccceeEEEEcccCchhhHHHHHHHHHhhcceeeC
Q 024710          194 LIDCKAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  264 (264)
Q Consensus       194 LldA~sr----~gyY~~EY~v~~p~e~~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~~~~l~~vvdSF~v~  264 (264)
                      ||++.++    +.||.|||        .||+|++|+|. +|   |||||++|+||+||+|.++.|++|++||+|+
T Consensus       197 Ll~a~~re~dGktYY~~E~--------~rH~LasaTV~-~G---rLYt~~asape~rW~k~~~~lr~v~dSF~V~  259 (262)
T PLN00066        197 VLSMEVAEHSGRTYYQFEL--------PPHTLVTATAA-GN---RVYIFSVTANGLQWKRHYKDLKRIAKSFRVV  259 (262)
T ss_pred             eeEeeeeecCCcEEEEEEE--------eCceEEEEEEE-CC---EEEEEEeecchHhhHHHHHHHHHHhhceeee
Confidence            9999998    34999999        38999999997 43   9999999999999999999999999999985

>PLN03152 hypothetical protein; Provisional

Probab=99.95  E-value=1.5e-27  Score=213.44  Aligned_cols=143  Identities=18%  Similarity=0.312  Sum_probs=110.5

Q ss_pred             CceeeeeCCCceEEEccCCCccC-C-----------CCCCCcceEEEeccCCCCCceeEEEEecCC------CCcccccc
Q 024710          104 DLRVYTDELNKFEISIPQDWQLG-A-----------GEPNGFKSITAFYPQEASSSSVSVVITGLG------PDFTRMES  165 (264)
Q Consensus       104 gf~~y~D~~dGYsf~yPs~W~~~-~-----------G~~~g~k~Vv~F~p~~~~~eNVSVvITpv~------~d~~sL~d  165 (264)
                      ..-.|.  ++||++-||-++... +           |+.+--|.+.+-|.-.+.+|||||+|+|++      -+.++|+|
T Consensus        77 ~w~~~~--g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~D~sEnVSVVIspv~~LK~tfle~kDLtD  154 (241)
T PLN03152         77 SWFQFY--GDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASPDGSEVLSVVIRPSNQLKITFLEAKDITD  154 (241)
T ss_pred             hhhhhh--CCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCCCCCceEEEEEecCccccccccccCChhH
Confidence            444555  899999999999832 1           222233335677777889999999999986      25589999


Q ss_pred             CCCHHHHHHHHHhcccccCCCCC-CCeeeEEEeeec---CceEEEEEEEECCCCCceeEEEEEEEecCCccceeEEEEcc
Q 024710          166 FGKVEAFADTLVSGLDRSWRRPP-GVAAKLIDCKAS---KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQ  241 (264)
Q Consensus       166 fGsPeeva~~Lv~~l~~s~~~~~-~~~A~LldA~sr---~gyY~~EY~v~~p~e~~RH~ls~v~V~~nG~y~kLYTltaq  241 (264)
                      ||+|+|||+.++..       +. .+.+++++.++.   ++||+|||.++     .||+|++|+|. +|   |||||+++
T Consensus       155 LGsp~EVgkv~vP~-------g~~~~saR~iel~~E~dGKtYY~lEy~v~-----~RH~LaTVaVs-rG---KLYTl~aS  218 (241)
T PLN03152        155 LGSLKEAAKIFVPG-------GATLYSARTIKVKEEEGIRTYYFYEFGRD-----EQHVALVATVN-SG---KAYIAGAT  218 (241)
T ss_pred             cCCHHHHHHhhCCC-------cccccccceeeeeeecCCceeEEEEEEeC-----CcEEEEEEEEc-CC---eEEEEecC
Confidence            99999999666421       10 013444444332   66999999985     59999999996 44   99999999


Q ss_pred             cCchhhHHHHHHHHHhhcceeeC
Q 024710          242 FVEEESEKYGSNIEKAVASFRFI  264 (264)
Q Consensus       242 ~~E~rw~k~~~~l~~vvdSF~v~  264 (264)
                      ++|+||.|++++|+.+++||+|+
T Consensus       219 t~EkRW~Kvk~kfr~aa~SFsV~  241 (241)
T PLN03152        219 APESKWDDDGVKLRSAAISLTVL  241 (241)
T ss_pred             CchhchHHHHHHHHHHHhheeeC
Confidence            99999999999999999999986

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=97.55  E-value=0.0031  Score=51.29  Aligned_cols=124  Identities=16%  Similarity=0.207  Sum_probs=76.6

Q ss_pred             EEEccCCCccCCCCCCCcceEEEeccCCCCCceeEEEEecCCCCccccccCCCHHHHHHHHHhcccccCCCCCCCeeeEE
Q 024710          116 EISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLI  195 (264)
Q Consensus       116 sf~yPs~W~~~~G~~~g~k~Vv~F~p~~~~~eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~l~~s~~~~~~~~A~Ll  195 (264)
                      +|..|.+|+...-.      |.++.++.....|+.|...+++++       .+.+++.++.+..+-+     --..-+++
T Consensus         3 ~~~lP~~~~D~t~n------v~~~~~~~~~~~slvIsR~~l~~g-------~tl~~~~~~q~~~l~~-----~l~~~~~~   64 (130)
T PF08786_consen    3 SLTLPDGWQDRTMN------VLVLPDSGGSGPSLVISRDPLPDG-------ETLEDYLQRQLAQLRK-----QLPGFQLV   64 (130)
T ss_dssp             EEEEETTSEE--BE------EEEE--BTTB-EEEEEEEE---TT-------S-HHHHHHHHHHHHHC-----CSTT-EEE
T ss_pred             eEeCCCcceeceEE------EEEccCCCCCcceEEEEeccCCCC-------CCHHHHHHHHHHHHHh-----hCCCcEEE
Confidence            46779999854211      333333333355555555566544       4677888888887632     12223455


Q ss_pred             Eeeec--C--ceEEEEEEEECCCCCceeEEEEEEEecCCccceeEEEEcccCchhhHHHHHHHHHhhcce
Q 024710          196 DCKAS--K--GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASF  261 (264)
Q Consensus       196 dA~sr--~--gyY~~EY~v~~p~e~~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~~~~l~~vvdSF  261 (264)
                      +...-  +  .-+.++|+-..++. .-|...++..-. |  +++|++|..++..-.+..+..++.+++||
T Consensus        65 ~~~~~~l~~~~a~~l~~~~~~~g~-~v~Q~q~~~~~~-~--~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf  130 (130)
T PF08786_consen   65 ERQPITLGGRPARELEYSFRSGGQ-PVYQRQAAVLLP-G--RRVLVFTYTAPGPFTEEQRAHWEAILKSF  130 (130)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTC-EEEEEEEEEEEC----CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred             eeEEEEeCCCCeEEEEEEEeeCCE-EEEEEEEEEEEC-C--CEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            54433  3  36889999887764 567776655543 2  49999999999999999999999999998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein []

Probab=94.65  E-value=1.2  Score=39.34  Aligned_cols=133  Identities=18%  Similarity=0.232  Sum_probs=78.8

Q ss_pred             eEEEccCCCccCC-CCCCCcceEEEeccC-CCCCceeEEEEecCCCCccccccCCCHHHHHHHHHhcccccCCCCCCCee
Q 024710          115 FEISIPQDWQLGA-GEPNGFKSITAFYPQ-EASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAA  192 (264)
Q Consensus       115 Ysf~yPs~W~~~~-G~~~g~k~Vv~F~p~-~~~~eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~l~~s~~~~~~~~A  192 (264)
                      -++-.|.||.... ...+..-.+++.... ..-..|+-|+|..+..++       +|+|+.+.=-..+    +.-++-+ 
T Consensus        33 v~lP~P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~G~~-------Dp~e~l~~a~~d~----~~l~g~~-  100 (175)
T PF10738_consen   33 VSLPTPPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLTGDF-------DPAEALEHAPADA----QNLPGFR-  100 (175)
T ss_pred             EeccCCcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEeccCCC-------CHHHHHHhchhhH----hhCcCcc-
Confidence            5678899999653 223333334555442 333789999998775454       4666655321111    1112322 


Q ss_pred             eEEEeeec--Cce--EEEEEEEECCCCCceeEEEE--EEEecCCccceeEEEEcccCchhhHHHHHHHHHhhcceee
Q 024710          193 KLIDCKAS--KGF--YYIEYTLQNPGESRKHLFSA--IGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  263 (264)
Q Consensus       193 ~LldA~sr--~gy--Y~~EY~v~~p~e~~RH~ls~--v~V~~nG~y~kLYTltaq~~E~rw~k~~~~l~~vvdSF~v  263 (264)
                       .++++.-  +|+  +.+|-+-+.++. +||...-  |.-+.+++|  |..|++++.+..-....+.++.|++.|+|
T Consensus       101 -~~~~s~~~~~GfpS~~i~GtY~~~g~-~~~~~~r~VV~~~~~~~Y--lvqltvt~~~~qa~~~~~a~~aI~~g~~I  173 (175)
T PF10738_consen  101 -ELDGSPSDFSGFPSSQIEGTYDKDGM-RLHTSQRTVVIPGDDQRY--LVQLTVTTTADQAVALADATEAIDEGFTI  173 (175)
T ss_pred             -cccCCccccCCCceeEEEEEEeeCCE-EeEeEEEEEEEeCCCcEE--EEEEEeeccccchhhhhhHHHHHHcCCEe
Confidence             3333222  664  777755444432 3443332  333345554  78899999998888899999999999997

>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown

Probab=92.70  E-value=1.5  Score=38.02  Aligned_cols=128  Identities=16%  Similarity=0.169  Sum_probs=65.1

Q ss_pred             eeeeeCCCceEEEccCCCccC-CCCCCCcceEEEeccCCCCCceeEEEEecCCCCccccccCCCHHHHHHHHHhcccccC
Q 024710          106 RVYTDELNKFEISIPQDWQLG-AGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSW  184 (264)
Q Consensus       106 ~~y~D~~dGYsf~yPs~W~~~-~G~~~g~k~Vv~F~p~~~~~eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~l~~s~  184 (264)
                      +-|+.++.=|++.||.+|... +|+.+     ..|+.+..=+-|..+..-.       =++-+-+.++...-++.     
T Consensus         2 kKfiSpg~WFS~~YP~~W~EfED~E~s-----flFYnp~~WTGNfRISayk-------~~~~~ygk~~i~~EL~e-----   64 (153)
T PF12712_consen    2 KKFISPGAWFSMEYPADWNEFEDGEGS-----FLFYNPDQWTGNFRISAYK-------GGSAQYGKECIRQELKE-----   64 (153)
T ss_dssp             EEEE-GGG-EEEEE-TT-EEE---TTE-----EEEE-SSS---EEEEEEEE---------STTHHHHHHHHHHHH-----
T ss_pred             CcccCCCceEEEecCCCcchhccCCcc-----eEEEChHHhcCceEEEEEe-------cccccchHHHHHHHHHh-----
Confidence            468888889999999999843 45432     5688876677787765431       11222344555444443     


Q ss_pred             CCCCCCeeeEEEeeecCceEEEEEEEECCCCCceeEEEEEEEecCCccceeEEEEcccCchhhHHHHHHHHHhhcceee
Q 024710          185 RRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  263 (264)
Q Consensus       185 ~~~~~~~A~LldA~sr~gyY~~EY~v~~p~e~~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~~~~l~~vvdSF~v  263 (264)
                          +..|+++....-+.-|.-|---..+.+-.-|+-.+ +.+     +..|.|.-..+-   ..-.+..+.|+.|..|
T Consensus        65 ----n~~a~~vkvg~~~caYs~E~f~eeg~~YtsH~Wvt-g~~-----~~sfeCSFTv~k---g~~~~~aE~iiasL~v  130 (153)
T PF12712_consen   65 ----NPSAKLVKVGNWECAYSKEMFQEEGAYYTSHLWVT-GEG-----DVSFECSFTVPK---GESVKEAEEIIASLEV  130 (153)
T ss_dssp             -----TT-EEEEETTEEEEEEEEEEEETTEEEEEEEEEE-EET-----TEEEEEEEEEET---T---HHHHHHHHH-EE
T ss_pred             ----CCCcceEEeccEEEEEEhhhhhccCeeEEEEEEEE-ecC-----ceEEEEEEEccC---CCCcchHHHHHhhhee
Confidence                23356776665566676665444443334666655 553     277766555444   2234466777777654

In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.

>COG5435 Uncharacterized conserved protein [Function unknown]

Probab=91.96  E-value=2.4  Score=36.81  Aligned_cols=125  Identities=20%  Similarity=0.325  Sum_probs=74.0

Q ss_pred             EEEccCCCccCCCCCCCcceEEEeccCCCCCceeEEEEe--cCCCCccccccCCCHHHHHHHHHhcccccCCCCCCCeee
Q 024710          116 EISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVIT--GLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAK  193 (264)
Q Consensus       116 sf~yPs~W~~~~G~~~g~k~Vv~F~p~~~~~eNVSVvIT--pv~~d~~sL~dfGsPeeva~~Lv~~l~~s~~~~~~~~A~  193 (264)
                      .|..|..|+.-.        |-+|--....++-+|.+|+  |+.++ .      +-.++.++.+..+-+   .=|+=+  
T Consensus        10 ~l~lP~~w~DrS--------vNvf~~~~~gt~~~sfvIsRd~~~~g-~------~~~~y~~rql~~l~k---~Lpgy~--   69 (147)
T COG5435          10 TLELPAAWQDRS--------VNVFVSGDNGTSGFSFVISRDPLEPG-D------TFPEYVQRQLALLRK---QLPGYE--   69 (147)
T ss_pred             eEcCcchhccce--------EEEEEecCCCcceeEEEEecCCCCCC-C------cHHHHHHHHHHHHHh---hCCCeE--
Confidence            578999998432        3333333333667778887  55443 1      234556666655532   112211  


Q ss_pred             EEEeeec--Cc--eEEEEEEEECC-CCCceeEEEEEEEecCCccceeEEEEcccCchhhHHHHHHHHHhhcceee
Q 024710          194 LIDCKAS--KG--FYYIEYTLQNP-GESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  263 (264)
Q Consensus       194 LldA~sr--~g--yY~~EY~v~~p-~e~~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~~~~l~~vvdSF~v  263 (264)
                      |..-.+-  +|  .-..+|.-+.+ .+++|=..-.+.+.++   .++-++|+.++-.--++-++...++|.||..
T Consensus        70 ~~~~~e~~v~~~aa~~~~y~w~~~~~~~r~v~q~~~~i~~g---~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p  141 (147)
T COG5435          70 LHHRREIEVGGAAAPLLDYQWTSPEGEQRRVQQRQVFIERG---DTVLIFTLTTPGEFTPSQKKAWEQVIQSFVP  141 (147)
T ss_pred             EeeccccccCccccceeEEEeecCCCCCceEEEEEeecccC---CeEEEEEecCCCCCCHHHHHHHHHHHHhcCC
Confidence            1111111  22  46667776664 3433333333466554   4999999999999899999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	4e-25
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	3e-21
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	7e-11

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 96.9 bits (240), Expect = 4e-25
 Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 11/162 (6%)

Query: 105 LRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRME 164
           L+ Y+D  + +E   P  W     +         F        ++SV+I+ +  D T + 
Sbjct: 14  LQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKT-LT 72

Query: 165 SFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPGESRKHL 220
             G         +  ++          A+LI+ +A     + +Y +EY +       +H 
Sbjct: 73  DLGTATDVGYRFMKTVND--ASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHD 130

Query: 221 FSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFR 262
            +++         +L T      E+  +   S  +   +SF 
Sbjct: 131 LASVTTNR----GKLITFDLSTAEDRWDTVKSLFDTVASSFH 168

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 86.8 bits (214), Expect = 3e-21
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 18/173 (10%)

Query: 98  ALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLG 157
             +A   L+ Y D  + +E   P+ W     E         F+    ++ +VSVV+  + 
Sbjct: 1   GSSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVV---FHDIIETTENVSVVVNTVA 57

Query: 158 PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNP 213
              + +E  G  E   D L+  +        G ++ LI   +     K +Y +EY +  P
Sbjct: 58  STKS-LEELGSPEEVGDRLLRNIIA--PSESGRSSALIAATSQKADDKTYYILEYAVTLP 114

Query: 214 G----ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFR 262
           G      ++H  S+I ++      ++YT++    EE   K     +  V+SF 
Sbjct: 115 GDGNTAQQRHNLSSIAVSR----GKVYTLSVSAPEERWPKVEDQFKTIVSSFT 163

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 58.7 bits (141), Expect = 7e-11
 Identities = 34/183 (18%), Positives = 57/183 (31%), Gaps = 27/183 (14%)

Query: 98  ALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLG 157
               + D + Y    + F++ IP  W     E      +  F     ++S+V V IT   
Sbjct: 2   KPKTDTDFQTYNG--DGFKLQIPSKW-NPNKEVEYPGQVLRFEDNFDATSNVIVAITP-- 56

Query: 158 PDFTRMESFGKVEAFADTLVSGLDRSW-----------RRPPGVAAKLIDCKAS----KG 202
            D   +  FG  E F   +   L R                    A +++   +    K 
Sbjct: 57  TDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQ 116

Query: 203 FYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSN-IEKAVA 259
           +YY+    +     E  KH      +       +LY    Q  ++   K     +E    
Sbjct: 117 YYYLSILTRTADGNEGGKHQLVTATVNDG----KLYICKAQAGDKRWFKGAKKFVENTAT 172

Query: 260 SFR 262
           SF 
Sbjct: 173 SFS 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	98.02
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	96.91

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=6.2e-37  Score=257.95  Aligned_cols=153  Identities=24%  Similarity=0.441  Sum_probs=132.5

Q ss_pred             cCCceeeeeCCCceEEEccCCCccCCCCCCCcceEEEeccCCCCCceeEEEEecCCCCccccccCCCHHHHHHHHHhccc
Q 024710          102 NEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLD  181 (264)
Q Consensus       102 ~~gf~~y~D~~dGYsf~yPs~W~~~~G~~~g~k~Vv~F~p~~~~~eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~l~  181 (264)
                      .+||++|.|+.+||+|+||++|+..... .|.  .++|+|+++..+||+|+|+|+++ +++|++||+|++||++|++...
T Consensus         5 ~~g~~~~~D~~~gysf~~P~~W~~~~~~-~g~--~v~f~d~~~~~~~v~V~v~p~~~-~~~l~~~G~~e~va~~l~~~~~   80 (165)
T 2xb3_A            5 TSGLQAYVDSYDGYEFLYPRGWVQVQVE-DPV--DVVFHDIIETTENVSVVVNTVAS-TKSLEELGSPEEVGDRLLRNII   80 (165)
T ss_dssp             -CCEEEEEETTTTEEEEEETTEEEECCC-TTE--EEEEEESSCTTSEEEEEEEECSS-CCCSGGGCCHHHHHHHHHHHTT
T ss_pred             CCCceEEEcCCCCEEEEcCCCCeEecCC-CCc--eEEEECcccCCceEEEEEecCCC-CCChHHcCCHHHHHHHHHHHhh
Confidence            4699999999999999999999976532 133  47899999889999999999975 5899999999999999999864


Q ss_pred             ccCCCCCCCeeeEEEeeec--Cc--eEEEEEEEECCC----CCceeEEEEEEEecCCccceeEEEEcccCchhhHHHHHH
Q 024710          182 RSWRRPPGVAAKLIDCKAS--KG--FYYIEYTLQNPG----ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSN  253 (264)
Q Consensus       182 ~s~~~~~~~~A~LldA~sr--~g--yY~~EY~v~~p~----e~~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~~~~  253 (264)
                      .+  .++++.++||++.+|  +|  ||+|||+++.|+    ++.||.|++++|. ||   |||||++|+||.+|+++++.
T Consensus        81 ~~--~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~-~g---~lY~l~~sape~~w~~~~~~  154 (165)
T 2xb3_A           81 AP--SESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVS-RG---KVYTLSVSAPEERWPKVEDQ  154 (165)
T ss_dssp             SC--TTSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEE-TT---EEEEEEEEEEGGGHHHHHHH
T ss_pred             cC--CCCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEE-CC---EEEEEEEecCHHHhHHHHHH
Confidence            21  224899999999998  33  999999999987    4789999999997 54   99999999999999999999


Q ss_pred             HHHhhcceeeC
Q 024710          254 IEKAVASFRFI  264 (264)
Q Consensus       254 l~~vvdSF~v~  264 (264)
                      |++|++||+|+
T Consensus       155 l~~v~~SF~v~  165 (165)
T 2xb3_A          155 FKTIVSSFTVY  165 (165)
T ss_dssp             HHHHHHTCEEC
T ss_pred             HHHHHhhEEeC
Confidence            99999999986

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=1.9e-36  Score=261.29  Aligned_cols=153  Identities=24%  Similarity=0.368  Sum_probs=124.8

Q ss_pred             cCCceeeeeCCCceEEEccCCCccCC-CCCCCcceEEEeccCCCCCceeEEEEecCCCCccccccCCCHHHHHHHHHhcc
Q 024710          102 NEDLRVYTDELNKFEISIPQDWQLGA-GEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL  180 (264)
Q Consensus       102 ~~gf~~y~D~~dGYsf~yPs~W~~~~-G~~~g~k~Vv~F~p~~~~~eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~l  180 (264)
                      .+||++|.  +|||+|+||++|+... ...+|.  .++|+|+++.++||+|+|+|+  ++++|+|||+|++|++++.+.+
T Consensus         6 ~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~--~~~f~d~~~~~~nvsV~v~p~--~~~si~dlGspe~~~~~v~~~l   79 (177)
T 1v2b_A            6 DTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQ--VLRFEDNFDATSNVIVAITPT--DKKSITDFGSPEQFLSQVDYLL   79 (177)
T ss_dssp             -CCEEEEE--CSSEEEEEETTCEECCCCCSTTE--EEEEEETTEEEEEEEEEEEEC--SCSSGGGGCSHHHHHHHTGGGC
T ss_pred             CCCceEEe--cCCEEEEcCCCCcccccccCCCc--eEEEeCCcCCCccEEEEEeCC--CCCChhHCCCHHHHHHHHHHHH
Confidence            36999998  9999999999999542 223454  478999999999999999999  4589999999999877777666


Q ss_pred             cccCCC-----------CCCCeeeEEEeeec--Cc--eEEEEEEEECCC--CCceeEEEEEEEecCCccceeEEEEcccC
Q 024710          181 DRSWRR-----------PPGVAAKLIDCKAS--KG--FYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFV  243 (264)
Q Consensus       181 ~~s~~~-----------~~~~~A~LldA~sr--~g--yY~~EY~v~~p~--e~~RH~ls~v~V~~nG~y~kLYTltaq~~  243 (264)
                      .+....           +++++|+||++.+|  +|  ||+|||.++.++  ++.||+|++++|. ||   |||||++|++
T Consensus        80 ~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~-~g---kLY~l~~~a~  155 (177)
T 1v2b_A           80 GRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVN-DG---KLYICKAQAG  155 (177)
T ss_dssp             ------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEE-TT---EEEEEEEEEE
T ss_pred             HHHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEE-CC---EEEEEEEecC
Confidence            543222           23488999999998  55  999999999886  3689999999997 54   9999999999


Q ss_pred             chhhHHH-HHHHHHhhcceeeC
Q 024710          244 EEESEKY-GSNIEKAVASFRFI  264 (264)
Q Consensus       244 E~rw~k~-~~~l~~vvdSF~v~  264 (264)
                      |++|+|. ++.|++|++||+|.
T Consensus       156 e~~W~k~~~~~l~~v~~SF~v~  177 (177)
T 1v2b_A          156 DKRWFKGAKKFVENTATSFSLA  177 (177)
T ss_dssp             GGGCSTTTTHHHHHHHHTCEEC
T ss_pred             HHHhhhhHHHHHHHHHhheecC
Confidence            9999995 99999999999983

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=1e-38  Score=271.60  Aligned_cols=154  Identities=18%  Similarity=0.311  Sum_probs=134.3

Q ss_pred             cCCceeeeeCCCceEEEccCCCccCCCC--CCCcceEEEeccCCCCCceeEEEEecCCCCccccccCCCHHHHHHHHHhc
Q 024710          102 NEDLRVYTDELNKFEISIPQDWQLGAGE--PNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSG  179 (264)
Q Consensus       102 ~~gf~~y~D~~dGYsf~yPs~W~~~~G~--~~g~k~Vv~F~p~~~~~eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~  179 (264)
                      .+||++|+|+.|||+|+||++|+..+++  ..|.  +++|+|+.+.++||+|+|+|++.+ ++|+|||+|++||++|++.
T Consensus        11 ~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~--~v~f~d~~~~~~nvsV~v~p~~~~-~si~d~G~pe~va~~l~~~   87 (170)
T 2lnj_A           11 IASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGV--DVVFRDLIERDENLSVIISEIPSD-KTLTDLGTATDVGYRFMKT   87 (170)
Confidence            4699999999999999999999965432  2233  578999999999999999999754 8999999999999999998


Q ss_pred             ccccCCCCCCCeeeEEEeeec--C--ceEEEEEEEECCCCCceeEEEEEEEecCCccceeEEEEcccCchhhHHHHHHHH
Q 024710          180 LDRSWRRPPGVAAKLIDCKAS--K--GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIE  255 (264)
Q Consensus       180 l~~s~~~~~~~~A~LldA~sr--~--gyY~~EY~v~~p~e~~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~~~~l~  255 (264)
                      +.++  .++++.|+||++.++  +  .||+|||+++.|+++.||+|++++|. +|   |||||++|+||++|++.++.|+
T Consensus        88 ~~~~--~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~-~g---klY~l~~~ape~~w~~~~~~l~  161 (170)
T 2lnj_A           88 VNDA--SQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTN-RG---KLITFDLSTAEDRWDTVKSLFD  161 (170)
Confidence            6522  234899999999998  3  49999999999955789999999996 44   9999999999999999999999


Q ss_pred             HhhcceeeC
Q 024710          256 KAVASFRFI  264 (264)
Q Consensus       256 ~vvdSF~v~  264 (264)
                      +|++||+|+
T Consensus       162 ~v~~SF~v~  170 (170)
T 2lnj_A          162 TVASSFHVY  170 (170)
Confidence            999999985

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=98.02  E-value=0.00011  Score=60.40  Aligned_cols=132  Identities=16%  Similarity=0.220  Sum_probs=85.9

Q ss_pred             ceeeeeCCCceEEEccCCCccCCCCCCCcceEEEeccC-CCCC--ceeEEEEecCCCCccccccCCCHHHHHHHHHhccc
Q 024710          105 LRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQ-EASS--SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLD  181 (264)
Q Consensus       105 f~~y~D~~dGYsf~yPs~W~~~~G~~~g~k~Vv~F~p~-~~~~--eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~l~  181 (264)
                      ...|.  -+.++|..|.+|+...        +.+|... ....  -||.|...+++++       .+.+++.++-++.+-
T Consensus         3 m~~y~--~~Egsl~lP~gw~D~t--------~nv~~~~~~~~~g~~~lvIsR~~~~~~-------~~l~~~~~~q~~~l~   65 (148)
T 1tu1_A            3 MTLYR--LHEADLEIPDAWQDQS--------INIFKLPASGPAREASFVISRDASQGD-------APFADYVARQLENAE   65 (148)
T ss_dssp             EEEEE--CSSEEEEEETTSEECC--------BEEEEECCBTTBCCEEEEEEEECCCTT-------SCHHHHHHHHHHHHH
T ss_pred             CceEE--ECCEEEeCCCCcEeee--------EEEEEcCCCCCCCceEEEEEeccCCCC-------CCHHHHHHHHHHHHH
Confidence            46687  8999999999999332        2445543 2212  4555555555444       456666655555442


Q ss_pred             ccCCCCCCCeeeEEEeeec--Cc--eEEEEEEEECCCCCceeEEEEEEEecCCccceeEEEEcccCchhhHHHHHHHHHh
Q 024710          182 RSWRRPPGVAAKLIDCKAS--KG--FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA  257 (264)
Q Consensus       182 ~s~~~~~~~~A~LldA~sr--~g--yY~~EY~v~~p~e~~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~~~~l~~v  257 (264)
                      +. .  ++  =+++.....  +|  --.+||+-+.++ +.+|.+-++.+- .+   ++|.++..++...|+..+..++.|
T Consensus        66 ~~-l--~~--y~~~~~~~~~l~g~~a~~~e~~~~~~g-~~~~Q~q~~~~~-~~---~~l~~t~t~~~~~~~~~~~~~~~i  135 (148)
T 1tu1_A           66 KQ-L--PG--FKLHKRWDINIHGHAAVLLDYQWQREG-RDLMLRQVFIER-RP---AVLITTLTTTPADLPHHEPAWKQA  135 (148)
T ss_dssp             HH-S--TT--CEEEEEEEEEETTEEEEEEEEEEEETT-EEEEEEEEEECC-SS---SEEEEEEEECGGGHHHHHHHHHHH
T ss_pred             hh-C--cC--cEEeeeEeEEEcCCcEEEEEEEEccCC-EEEEEEEEEEEE-CC---eEEEEEEEcCCCCCHHHHHHHHHH
Confidence            11 0  11  011111111  33  477888877655 479999887775 33   999999999999999999999999


Q ss_pred             hcceee
Q 024710          258 VASFRF  263 (264)
Q Consensus       258 vdSF~v  263 (264)
                      ++||++
T Consensus       136 ~~Sf~~  141 (148)
T 1tu1_A          136 MQTLVP  141 (148)
T ss_dssp             HHTCEE
T ss_pred             HHhccc
Confidence            999985

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=96.91  E-value=0.031  Score=47.48  Aligned_cols=132  Identities=14%  Similarity=0.209  Sum_probs=85.4

Q ss_pred             CceEEEccCCCccCCCCCCCcceEEEeccC-CC--CCceeEEEEecCCCCccccccCCCHHHHHHHHHhcccccCCCCCC
Q 024710          113 NKFEISIPQDWQLGAGEPNGFKSITAFYPQ-EA--SSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPG  189 (264)
Q Consensus       113 dGYsf~yPs~W~~~~G~~~g~k~Vv~F~p~-~~--~~eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~l~~s~~~~~~  189 (264)
                      -++++-.|.||........    .++--|+ ..  =..|+-|.+.-.+.|+     |   ++.-..|.+.+.    .-++
T Consensus        18 p~~~v~~P~gWe~~~~~~~----~~~~~~~~~~~~F~pN~vVtv~r~~~~~-----~---e~~r~el~~~~~----~lp~   81 (161)
T 3lyd_A           18 TGFTVPIPETWQPDPTMGT----QFAARPHTPPQGFTPNIIGTVRRAATGA-----L---HNQRTELDQRAT----QLPD   81 (161)
T ss_dssp             CEEEEECCTTEEECTTSSS----SEEEEESSCCSSSCCEEEEEEEEECTTH-----H---HHHHHHHHHHHT----TSTT
T ss_pred             ceeeccCCCCceEcCCCCc----eEEeccCCCCCCccccEEEEEEecCcHH-----H---HHHHHHHHHHHh----hCCC
Confidence            3788999999997643322    1333433 22  2789999888775553     2   443333333221    1133


Q ss_pred             CeeeEEEeeecCc--eEEEEEEEECCCCCcee--EEEEEEEecCCccceeEEE--EcccCchhhHHHHHHHHHhhcceee
Q 024710          190 VAAKLIDCKASKG--FYYIEYTLQNPGESRKH--LFSAIGMASNGWYNRLYTV--TGQFVEEESEKYGSNIEKAVASFRF  263 (264)
Q Consensus       190 ~~A~LldA~sr~g--yY~~EY~v~~p~e~~RH--~ls~v~V~~nG~y~kLYTl--taq~~E~rw~k~~~~l~~vvdSF~v  263 (264)
                      -+-.-....+.+|  -|..||.-+.+.. ..+  .+..+.|.++|   ..|.+  ++++.+..-+.+.+.++.+++|++|
T Consensus        82 ~~~~~r~~~~~~G~pa~~iey~y~~~~~-g~~aq~~~~vvve~~~---v~~vv~lt~T~~~~q~~~~~~d~q~iv~sl~v  157 (161)
T 3lyd_A           82 YAERGRTETTVDGFPAYHIEYAYRHHGT-ITIAQMITLVEVSHPH---AVDIIQLTATCAGDQTADYWDTFRLMHADLTV  157 (161)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEEETTT-EEEEEEEEEEEEECSS---CEEEEEEEEEEEGGGHHHHHHHHHHHHHTCEE
T ss_pred             cEeecccccccCCcccEEEEEEEecCCC-ceEeeEEEEEEEecCC---EEEEEEEEEEeccccchHHHHHHHHHhheeEe
Confidence            3222223334466  5999999877764 355  25677888776   55555  9999999999999999999999997


Q ss_pred             C
Q 024710          264 I  264 (264)
Q Consensus       264 ~  264 (264)
                      .
T Consensus       158 ~  158 (161)
T 3lyd_A          158 Q  158 (161)
T ss_dssp             E
T ss_pred             c
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	264
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	4e-19

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 80.1 bits (197), Expect = 4e-19
 Identities = 34/177 (19%), Positives = 56/177 (31%), Gaps = 27/177 (15%)

Query: 104 DLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRM 163
           D + Y    + F++ IP  W     E      +  F     ++S+V V IT    D   +
Sbjct: 2   DFQTYNG--DGFKLQIPSKW-NPNKEVEYPGQVLRFEDNFDATSNVIVAITP--TDKKSI 56

Query: 164 ESFGKVEAFADTLVSGLDRSW-----------RRPPGVAAKLIDCKAS----KGFYYIEY 208
             FG  E F   +   L R                    A +++   +    K +YY+  
Sbjct: 57  TDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSI 116

Query: 209 TLQNP--GESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSN-IEKAVASFR 262
             +     E  KH      +       +LY    Q  ++   K     +E    SF 
Sbjct: 117 LTRTADGNEGGKHQLVTATV----NDGKLYICKAQAGDKRWFKGAKKFVENTATSFS 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	98.24

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=5.9e-37  Score=258.69  Aligned_cols=151  Identities=24%  Similarity=0.388  Sum_probs=123.6

Q ss_pred             CCceeeeeCCCceEEEccCCCccCC-CCCCCcceEEEeccCCCCCceeEEEEecCCCCccccccCCCHHHHHHHHHhccc
Q 024710          103 EDLRVYTDELNKFEISIPQDWQLGA-GEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLD  181 (264)
Q Consensus       103 ~gf~~y~D~~dGYsf~yPs~W~~~~-G~~~g~k~Vv~F~p~~~~~eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~l~  181 (264)
                      ++|++|.|  |||+|+||++|+... ...+|.  .++|+|+.+.++||+|+|+|+  ++++|++||+|+++++++...+.
T Consensus         1 ~~~~~y~~--dgy~f~~P~~W~~~~~~~~~g~--d~~f~d~~~~~~nv~V~v~p~--~~~sl~~~G~p~~~~~~v~~~l~   74 (171)
T d1v2ba_           1 TDFQTYNG--DGFKLQIPSKWNPNKEVEYPGQ--VLRFEDNFDATSNVIVAITPT--DKKSITDFGSPEQFLSQVDYLLG   74 (171)
T ss_dssp             CCEEEEEC--SSEEEEEETTCEECCCCCSTTE--EEEEEETTEEEEEEEEEEEEC--SCSSGGGGCSHHHHHHHTGGGC-
T ss_pred             CCcccccC--CCEEEECCCCCceecccCCCCc--eEEEeccccCCceEEEEEecC--CCcchhhccChHHHHHHHHHHHh
Confidence            47999996  899999999998542 223343  477999999999999999998  67899999999999999988886


Q ss_pred             ccC-----------CCCCCCeeeEEEeeec--Cc--eEEEEEEEECCC--CCceeEEEEEEEecCCccceeEEEEcccCc
Q 024710          182 RSW-----------RRPPGVAAKLIDCKAS--KG--FYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVE  244 (264)
Q Consensus       182 ~s~-----------~~~~~~~A~LldA~sr--~g--yY~~EY~v~~p~--e~~RH~ls~v~V~~nG~y~kLYTltaq~~E  244 (264)
                      +.+           ..++++.|+|+++.++  +|  ||+|||.++.++  ++.||+|++++|. ||   |||||++|+||
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~~~v~-~g---rLYtl~~~~pe  150 (171)
T d1v2ba_          75 RQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVN-DG---KLYICKAQAGD  150 (171)
T ss_dssp             -----------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEE-TT---EEEEEEEEEEG
T ss_pred             hhhhcccccccccccccccceeEEEEeeeeecCCEEEEEEEEEEecCCCCCcccEEEEEEEEe-CC---EEEEEEEecCH
Confidence            543           2345899999999998  33  999999999864  5689999999997 44   99999999999


Q ss_pred             hhhHH-HHHHHHHhhcceee
Q 024710          245 EESEK-YGSNIEKAVASFRF  263 (264)
Q Consensus       245 ~rw~k-~~~~l~~vvdSF~v  263 (264)
                      ++|.+ .++.|++||+||+|
T Consensus       151 ~~w~~~~~~~l~~~v~SF~v  170 (171)
T d1v2ba_         151 KRWFKGAKKFVENTATSFSL  170 (171)
T ss_dssp             GGCSTTTTHHHHHHHHTCEE
T ss_pred             HHhhhhhHHHHHHHHhceEe
Confidence            99988 46789999999998

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.24  E-value=1e-05  Score=63.98  Aligned_cols=133  Identities=14%  Similarity=0.160  Sum_probs=90.0

Q ss_pred             ceeeeeCCCceEEEccCCCccCCCCCCCcceEEEeccCCCCC--ceeEEEEecCCCCccccccCCCHHHHHHHHHhcccc
Q 024710          105 LRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASS--SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR  182 (264)
Q Consensus       105 f~~y~D~~dGYsf~yPs~W~~~~G~~~g~k~Vv~F~p~~~~~--eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~l~~  182 (264)
                      ...|.  -+.=+|.+|.+|..-...      |.+ .|+....  .||.|...++++       =.+++++.++.+..+-+
T Consensus         3 ~~~Y~--~~Egs~~lP~gw~d~t~n------i~~-~~~~~~~~~~~lvIsr~~l~~-------~~~l~~~~~~~~~~l~~   66 (144)
T d1tu1a_           3 MTLYR--LHEADLEIPDAWQDQSIN------IFK-LPASGPAREASFVISRDASQG-------DAPFADYVARQLENAEK   66 (144)
T ss_dssp             EEEEE--CSSEEEEEETTSEECCBE------EEE-ECCBTTBCCEEEEEEEECCCT-------TSCHHHHHHHHHHHHHH
T ss_pred             CceeE--EcCEEEeCCCCceeCcce------EEE-ecCCCCCcceEEEEEeecCCC-------CCCHHHHHHHHHHHHHh
Confidence            34555  333489999999843211      222 3444443  345444445543       35888999999888743


Q ss_pred             cCCCCCCCeeeEEEeeec--Cc--eEEEEEEEECCCCCceeEEEEEEEecCCccceeEEEEcccCchhhHHHHHHHHHhh
Q 024710          183 SWRRPPGVAAKLIDCKAS--KG--FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAV  258 (264)
Q Consensus       183 s~~~~~~~~A~LldA~sr--~g--yY~~EY~v~~p~e~~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~~~~l~~vv  258 (264)
                      .. .    .-++++...-  +|  -+.+||+-..++ ...|+.-++.+- +|   ++|+|+..++...++..++.+++++
T Consensus        67 ~l-~----~~~~~~~~~~~l~g~pa~~~~~t~~~~~-~~v~Q~q~~~~~-~~---~~~~lt~t~~~~~~~~~~~~~~~il  136 (144)
T d1tu1a_          67 QL-P----GFKLHKRWDINIHGHAAVLLDYQWQREG-RDLMLRQVFIER-RP---AVLITTLTTTPADLPHHEPAWKQAM  136 (144)
T ss_dssp             HS-T----TCEEEEEEEEEETTEEEEEEEEEEEETT-EEEEEEEEEECC-SS---SEEEEEEEECGGGHHHHHHHHHHHH
T ss_pred             hC-C----CcEEEeeEecccCCCcEEEEEEEEeeCC-EeEEEEEEEEEe-CC---CEEEEEEecCCcCCHHHHHHHHHHH
Confidence            21 1    2356665443  44  588999988776 468888886664 54   7899999999999999999999999


Q ss_pred             cceee
Q 024710          259 ASFRF  263 (264)
Q Consensus       259 dSF~v  263 (264)
                      +||+.
T Consensus       137 ~Sf~p  141 (144)
T d1tu1a_         137 QTLVP  141 (144)
T ss_dssp             HTCEE
T ss_pred             HhCcc
Confidence            99974