Citrus Sinensis ID: 024712

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCHSTTYERAEQGR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MVTKTEETQLNRLENqvdnggggAWEYLCLVKKlkvrrpdkvlrhglsilndpkkrsalgpdvwTLYEQVSIAAMDCQCLDVAKDCIKVLQKqfpeskrvgRLEGILLEAKGLWAEAEKAYSSllednpldpvlHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELilsqptvplyhLAYADVLYTLGGVDNILLAKKYYAStidltggkntkALFGICLVMFVCHSTTYERAEQGR
Flexible Loop (DISEMBL)
mvtkteetqlnrlenqvdnggggAWEYLCLVKKLKVRRPDKVLrhglsilndpkkrsalgpdVWTLYEQVSIAAMDCQCLDVAKDCIKVLQkqfpeskrvgrlEGILLEAKGLWAEAEKAYSSllednpldPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCHSTTYERAEQGR
Low Complexity Region (SEG)
MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCHSTTYERAEQGR
Disordered region (IsUnstruct)
*******************GGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCHSTTY*******
Disordered Region (DISOPRED)
*****EE**LNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVM***************
Disordered Region (DISEMBL)
MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCHSTT********
Disordered Region (DISPRO)
******ETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCHST*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCHSTTYERAEQGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
Q6TGY8	297	ER membrane protein compl	yes	no	0.802	0.710	0.435	3e-46
Q6INS3	297	ER membrane protein compl	N/A	no	0.787	0.696	0.428	3e-45
Q5M7J9	297	ER membrane protein compl	yes	no	0.787	0.696	0.428	3e-45
Q8AVU9	297	ER membrane protein compl	N/A	no	0.787	0.696	0.423	1e-44
B0BNG0	297	ER membrane protein compl	yes	no	0.828	0.734	0.417	1e-43
Q9CRD2	297	ER membrane protein compl	yes	no	0.802	0.710	0.425	1e-43
Q15006	297	ER membrane protein compl	yes	no	0.802	0.710	0.421	6e-43
Q5R882	297	ER membrane protein compl	yes	no	0.828	0.734	0.412	7e-43
Q5E993	297	ER membrane protein compl	yes	no	0.802	0.710	0.416	4e-42
Q86K48	322	ER membrane protein compl	yes	no	0.878	0.717	0.334	5e-30

>sp|Q6TGY8|EMC2_DANRE ER membrane protein complex subunit 2 OS=Danio rerio GN=emc2 PE=2 SV=1

 Score =  185 bits (470), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 94/216 (43%), Positives = 140/216 (64%), Gaps = 5/216 (2%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  ++++  G  ++N+    S LG D+W +YEQV IAA+DC   D+A  C++ L++QFP+
Sbjct: 28  RNSEQIVDVGEELINEHA--SKLGDDIWIIYEQVMIAALDCSRDDLAWSCLQELKRQFPD 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+ LEA   + +A K Y S+L+D+P +    KR++ I +AQG    AI  LN
Sbjct: 86  SHRVKRLAGMRLEALERYDDANKLYDSILQDDPTNTAARKRKICILRAQGKSSEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW EL+E+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELSELYINEHDYAKAAFCLEELMMTNPHNHLYCEQYAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCH 252
           +N+ LA+KY+A  + L   +N +ALFG  L M   H
Sbjct: 206 ENLELARKYFAQALKL-NNRNMRALFG--LYMSASH 238

Danio rerio (taxid: 7955)

>sp|Q6INS3|EMC2A_XENLA ER membrane protein complex subunit 2-A OS=Xenopus laevis GN=emc2-a PE=2 SV=1

 Score =  182 bits (461), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/210 (42%), Positives = 135/210 (64%), Gaps = 3/210 (1%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  + V+  G  ++N+    S LG D+W +YEQV IAA+DC   D+A  C++ L++QFP 
Sbjct: 28  RNSEHVIEVGEELINEHA--SKLGDDIWIIYEQVMIAALDCGRDDIAMSCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+D+P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAARKRKIAIRKAQGRNSEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL+ P    Y+  +A+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICL 246
           +N+ L++KY++  + L    N +ALFG+ +
Sbjct: 206 ENLELSRKYFSQALKL-NNHNMRALFGLYI 234

Xenopus laevis (taxid: 8355)

>sp|Q5M7J9|EMC2_XENTR ER membrane protein complex subunit 2 OS=Xenopus tropicalis GN=emc2 PE=2 SV=1

 Score =  182 bits (461), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/210 (42%), Positives = 135/210 (64%), Gaps = 3/210 (1%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  + V+  G  ++N+    S LG D+W +YEQV IAA+DC   D+A  C++ L++QFP 
Sbjct: 28  RNSEHVIEVGEELINEHA--SKLGDDIWIIYEQVMIAALDCGRDDIAMSCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+D+P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAARKRKIAIRKAQGRNAEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL+ P    Y+  +A+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICL 246
           +N+ L++KY++  + L    N +ALFG+ +
Sbjct: 206 ENLELSRKYFSQALKL-NNHNMRALFGLYI 234

Xenopus tropicalis (taxid: 8364)

>sp|Q8AVU9|EMC2B_XENLA ER membrane protein complex subunit 2-B OS=Xenopus laevis GN=emc2-b PE=2 SV=1

 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/210 (42%), Positives = 136/210 (64%), Gaps = 3/210 (1%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  ++++  G  ++N+    S LG DVW +YEQV IAA+DC   D+A  C++ L++QFP 
Sbjct: 28  RNSEQIVDVGEELINEHA--SKLGDDVWIIYEQVMIAALDCGRDDIAMSCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+D+P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTATRKRKIAIRKAQGRNAEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL+ P    Y+  +A+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICL 246
           +N+ L++KY++  + L    + +ALFG+ +
Sbjct: 206 ENLELSRKYFSQALKL-NNHSMRALFGLYM 234

Xenopus laevis (taxid: 8355)

>sp|B0BNG0|EMC2_RAT ER membrane protein complex subunit 2 OS=Rattus norvegicus GN=Emc2 PE=2 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/223 (41%), Positives = 140/223 (62%), Gaps = 5/223 (2%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  ++++  G  ++ND    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct: 28  RNSEQIMEVGEELINDYA--SKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCHSTTYERA 259
           +N+ L++KY+A  + L   +N +ALFG  L M   H  +  +A
Sbjct: 206 ENLELSRKYFAQALKLN-NRNMRALFG--LYMSASHIASNPKA 245

Rattus norvegicus (taxid: 10116)

>sp|Q9CRD2|EMC2_MOUSE ER membrane protein complex subunit 2 OS=Mus musculus GN=Emc2 PE=2 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/216 (42%), Positives = 137/216 (63%), Gaps = 5/216 (2%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  ++++  G  ++ND    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct: 28  RNSEQIMEVGEELINDYA--SKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKTVEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCH 252
           +N+ L++KY+A  + L   +N +ALFG  L M   H
Sbjct: 206 ENLELSRKYFAQALKL-NNRNMRALFG--LYMSASH 238

Mus musculus (taxid: 10090)

>sp|Q15006|EMC2_HUMAN ER membrane protein complex subunit 2 OS=Homo sapiens GN=EMC2 PE=1 SV=1

 Score =  174 bits (441), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 91/216 (42%), Positives = 137/216 (63%), Gaps = 5/216 (2%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  ++++  G  ++N+    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct: 28  RNSEQIVEVGEELINEYA--SKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCH 252
           +N+ L++KY+A  + L   +N +ALFG  L M   H
Sbjct: 206 ENLELSRKYFAQALKL-NNRNMRALFG--LYMSASH 238

Homo sapiens (taxid: 9606)

>sp|Q5R882|EMC2_PONAB ER membrane protein complex subunit 2 OS=Pongo abelii GN=EMC2 PE=2 SV=1

 Score =  174 bits (440), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 140/223 (62%), Gaps = 5/223 (2%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  ++++  G  ++N+    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct: 28  RNSEQIVEVGEELINEYG--SKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCHSTTYERA 259
           +N+ L++KY+A  + L   +N +ALFG  L M   H  +  +A
Sbjct: 206 ENLELSRKYFAQALKL-NNRNMRALFG--LYMSASHIASNPKA 245

Pongo abelii (taxid: 9601)

>sp|Q5E993|EMC2_BOVIN ER membrane protein complex subunit 2 OS=Bos taurus GN=EMC2 PE=2 SV=1

 Score =  171 bits (434), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/216 (41%), Positives = 137/216 (63%), Gaps = 5/216 (2%)

Query: 37  RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
           R  ++++  G  ++++    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct: 28  RNSEQIVEVGEELISEYA--SKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query: 97  SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
           S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct: 86  SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145

Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
           +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPYNHLYCQQYAEVKYTQGGL 205

Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCH 252
           +N+ L++KY+A  + L   +N +ALFG  L M   H
Sbjct: 206 ENLELSRKYFAQALKL-NNRNMRALFG--LYMSASH 238

Bos taurus (taxid: 9913)

>sp|Q86K48|EMC2_DICDI ER membrane protein complex subunit 2 OS=Dictyostelium discoideum GN=emc2 PE=3 SV=1

 Score =  131 bits (330), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 132/242 (54%), Gaps = 11/242 (4%)

Query: 1   MVTKTEETQLNRLENQVDNGGGG-AW----EYLCLVKKLKVRRPDKVLRHGLSILND--P 53
           M+T ++  ++NR E  + N G    W    + L  ++K K+R+ + V ++GL ++     
Sbjct: 6   MLTSSDSIEINRYEEGIRNSGRSFNWVLVRDTLRFLRKSKIRKSNLVSKYGLKLVTQYFN 65

Query: 54  KKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKG 112
           K     G D     EQV +A +DC      K   + L+ +F  +S RV R+  + LE+  
Sbjct: 66  KLEDQEGYDT---IEQVIVACLDCGDHTNPKKLFEQLKSKFGKDSVRVQRIHALCLESNN 122

Query: 113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL 172
             AEA + + S+L+  P D +  KR+VAI K QGN   AI+ LN YL+ +M D +AW EL
Sbjct: 123 QLAEALQIFESILKKYPSDALSMKRQVAIFKGQGNLSKAIQVLNAYLQIYMCDLEAWLEL 182

Query: 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
           +  ++S   Y  A +C EE++L+ P   ++++ YA+ LY LGG +N   A +YY   ++L
Sbjct: 183 SSFHISYLSYSTALYCLEEVLLNAPINFVFYIKYAEPLYCLGGNENYNSAVQYYTHALEL 242

Query: 233 TG 234
             
Sbjct: 243 NS 244

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
225451281	300	PREDICTED: tetratricopeptide repeat prot	0.935	0.82	0.869	1e-125
356505931	302	PREDICTED: tetratricopeptide repeat prot	0.935	0.814	0.849	1e-124
255637779	302	unknown [Glycine max]	1.0	0.870	0.794	1e-123
224130686	302	predicted protein [Populus trichocarpa]	0.935	0.814	0.841	1e-123
363807355	302	uncharacterized protein LOC100796542 [Gl	0.935	0.814	0.837	1e-121
224125612	302	predicted protein [Populus trichocarpa]	0.935	0.814	0.833	1e-121
418731088	300	O-linked GlcNAc transferase [Solanum tub	0.935	0.82	0.821	1e-120
255542336	302	conserved hypothetical protein [Ricinus	1.0	0.870	0.790	1e-119
388505014	302	unknown [Medicago truncatula]	0.935	0.814	0.821	1e-118
449442911	303	PREDICTED: ER membrane protein complex s	1.0	0.867	0.768	1e-118

>gi|225451281|ref|XP_002277809.1| PREDICTED: tetratricopeptide repeat protein 35 [Vitis vinifera] gi|298204889|emb|CBI34196.3| unnamed protein product [Vitis vinifera]

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/246 (86%), Positives = 233/246 (94%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTKTEET+LNRLE QVDNGGGGAWEYLCLV+KLKVRR DKVL+HGLSILNDPKKRS LG
Sbjct: 1   MVTKTEETELNRLEIQVDNGGGGAWEYLCLVRKLKVRRSDKVLKHGLSILNDPKKRSNLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
           P+ WTLYEQV++AAMDCQCLDVAKDCIKVLQK+FPESKRVGRLEG+LLE+KG WAEAEKA
Sbjct: 61  PEEWTLYEQVAVAAMDCQCLDVAKDCIKVLQKRFPESKRVGRLEGMLLESKGSWAEAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           YSSLLE+NP D V+ KRRVA+AKAQGN   AIEWLNKYLETFMADHDAWRELAEIYVSLQ
Sbjct: 121 YSSLLEENPFDQVVLKRRVAMAKAQGNMSGAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAA+CYEELILSQPT+PLYHLAYA+VLYTLGG++N+  AKKYYASTIDLTGGKNT+A
Sbjct: 181 MYKQAAYCYEELILSQPTLPLYHLAYAEVLYTLGGLENLQTAKKYYASTIDLTGGKNTRA 240

Query: 241 LFGICL 246
           LFGICL
Sbjct: 241 LFGICL 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505931|ref|XP_003521742.1| PREDICTED: tetratricopeptide repeat protein 35-A-like [Glycine max]

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/246 (84%), Positives = 229/246 (93%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTK+EETQL+RLENQVDNGGGGAWEYLCLV+KLKVRR +KVL+HGLSILNDPK RS+LG
Sbjct: 1   MVTKSEETQLSRLENQVDNGGGGAWEYLCLVRKLKVRRSEKVLKHGLSILNDPKHRSSLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
            D WTLYEQV++AAMDCQCLDVAKDC KVLQK+FPESKRVGRLE +LLEAKG W  AEKA
Sbjct: 61  SDEWTLYEQVAVAAMDCQCLDVAKDCTKVLQKRFPESKRVGRLEAMLLEAKGSWELAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           Y+SLLEDNPLD  +HKRRVA+AKAQG    AI+WLNKYLETFMADHDAWRELAEIY+SLQ
Sbjct: 121 YTSLLEDNPLDQAIHKRRVAMAKAQGKISVAIDWLNKYLETFMADHDAWRELAEIYISLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG++N+  AKKYY+STIDLTGGKNT+A
Sbjct: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGLENLQTAKKYYSSTIDLTGGKNTRA 240

Query: 241 LFGICL 246
           LFGICL
Sbjct: 241 LFGICL 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637779|gb|ACU19211.1| unknown [Glycine max]

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/263 (79%), Positives = 234/263 (88%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTK+EETQL+RLENQVDNGGGGAWEYLCLV+KLKVRR +KVL+HGLSILNDPK RS+LG
Sbjct: 1   MVTKSEETQLSRLENQVDNGGGGAWEYLCLVRKLKVRRSEKVLKHGLSILNDPKHRSSLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
            D WTLYEQV++AAMDCQCLDVAKDC KVLQK+FPESKRVGRLE +LLEAKG W  AEKA
Sbjct: 61  SDEWTLYEQVAVAAMDCQCLDVAKDCTKVLQKRFPESKRVGRLEAMLLEAKGSWELAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           Y+SLLEDNPLD  +HKRRVA+AKAQG    AI+WLNKY ETFMADHDAWRELAEIY+SLQ
Sbjct: 121 YTSLLEDNPLDQAIHKRRVAMAKAQGKISVAIDWLNKYPETFMADHDAWRELAEIYISLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG++N+  AKKYY+STIDLTGGKNT+A
Sbjct: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGLENLQTAKKYYSSTIDLTGGKNTRA 240

Query: 241 LFGICLVMFVCHSTTYERAEQGR 263
           LFGICL        T  ++++ +
Sbjct: 241 LFGICLCTSAVTQLTKGKSKEDK 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130686|ref|XP_002328351.1| predicted protein [Populus trichocarpa] gi|222838066|gb|EEE76431.1| predicted protein [Populus trichocarpa]

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/246 (84%), Positives = 230/246 (93%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTK+EET+LNRLE+QVDNGGGGAWEYLCLV+KLKVRR DKVL+HGLSILND KKRS+LG
Sbjct: 1   MVTKSEETELNRLESQVDNGGGGAWEYLCLVRKLKVRRSDKVLKHGLSILNDSKKRSSLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
            + WTLYE+V+IAAMDCQ L+VAKDC+ VL+K+FPESKRVGRLE +LLEAKG W EAEKA
Sbjct: 61  SEEWTLYEEVAIAAMDCQSLEVAKDCVNVLRKKFPESKRVGRLEALLLEAKGSWGEAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           YSSLLEDNP D V+HKRRVA+AKAQGN   AIEWLNKYLETFMADHDAWRELAEIYVSLQ
Sbjct: 121 YSSLLEDNPFDQVVHKRRVALAKAQGNLSGAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEELILSQPTVPL+HLAYADVLYTLGG++N+  A+KYY+STIDLTGGKNT+A
Sbjct: 181 MYKQAAFCYEELILSQPTVPLFHLAYADVLYTLGGLENLQTARKYYSSTIDLTGGKNTRA 240

Query: 241 LFGICL 246
           LFGICL
Sbjct: 241 LFGICL 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807355|ref|NP_001242375.1| uncharacterized protein LOC100796542 [Glycine max] gi|255645329|gb|ACU23161.1| unknown [Glycine max]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/246 (83%), Positives = 228/246 (92%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTKTEETQLNRLENQVDNGGGGAWEYLCLV+KLKVRR +KVL+HGLSILND K+RS+LG
Sbjct: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVRKLKVRRSEKVLKHGLSILNDLKQRSSLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
            D WTLYEQV++AAMDCQCLDVAKDC KVL+K+F ESKRVGRLE +LLEAKG W  AEKA
Sbjct: 61  SDEWTLYEQVAVAAMDCQCLDVAKDCTKVLRKRFLESKRVGRLEAMLLEAKGSWELAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           Y+SLLEDNPLD  +HKRRVA+AKAQGN   AI+WLNKYLETFMADH+AWR LAEIYVSLQ
Sbjct: 121 YTSLLEDNPLDQAIHKRRVAMAKAQGNISVAIDWLNKYLETFMADHEAWRGLAEIYVSLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEELIL+QPTVPL+HLAYADVLYTLGG++N+  AKKYY+STIDLTGGKNT+A
Sbjct: 181 MYKQAAFCYEELILTQPTVPLFHLAYADVLYTLGGLENLQTAKKYYSSTIDLTGGKNTRA 240

Query: 241 LFGICL 246
           LFGICL
Sbjct: 241 LFGICL 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125612|ref|XP_002319632.1| predicted protein [Populus trichocarpa] gi|222858008|gb|EEE95555.1| predicted protein [Populus trichocarpa]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/246 (83%), Positives = 226/246 (91%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTKTEETQLNRLE+QVDNGGGGAWEYLC+V+KLKVRR  KVL+HGL ILND KKRS+LG
Sbjct: 1   MVTKTEETQLNRLESQVDNGGGGAWEYLCMVRKLKVRRSVKVLKHGLLILNDSKKRSSLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
           P+ WTLYEQV++AAMDCQ L+VAKDC+  LQK+FPESKRVGRLE +L EAKG W EAEKA
Sbjct: 61  PEEWTLYEQVAVAAMDCQSLEVAKDCVNALQKKFPESKRVGRLEAMLFEAKGSWGEAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           YSSLLEDNP D V+HKRRVA+AKAQGN   AI+ LNKYLETFMADHDAWRELAEIY+SLQ
Sbjct: 121 YSSLLEDNPFDQVVHKRRVALAKAQGNLTGAIDLLNKYLETFMADHDAWRELAEIYISLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEELILSQ TVPLYHLAYADVLYTLGG++N+L AKKYY+STIDLTGGKNT+A
Sbjct: 181 MYKQAAFCYEELILSQHTVPLYHLAYADVLYTLGGIENLLTAKKYYSSTIDLTGGKNTRA 240

Query: 241 LFGICL 246
           LFGICL
Sbjct: 241 LFGICL 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731088|gb|AFX67010.1| O-linked GlcNAc transferase [Solanum tuberosum]

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/246 (82%), Positives = 227/246 (92%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVT+TEE ++NRLENQV+NGGGG WEYLCLV KLK+RR D VL+HGLSILND KKRSALG
Sbjct: 1   MVTRTEEEEVNRLENQVENGGGGVWEYLCLVHKLKLRRSDMVLKHGLSILNDSKKRSALG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
           P+ WTLYEQV++AAMDCQ +DVAKDCIKVLQ++FP SKRVGRLE +LLEA+GLW+EAE A
Sbjct: 61  PEEWTLYEQVAVAAMDCQSIDVAKDCIKVLQRKFPGSKRVGRLEAMLLEARGLWSEAENA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           YSSLLE+NP D V+HKRRVA+AKAQGN   AI+WLNKYL+ FMADH+AWRELAEIYVSLQ
Sbjct: 121 YSSLLEENPFDQVVHKRRVAMAKAQGNTSAAIDWLNKYLDLFMADHEAWRELAEIYVSLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG++N+  AKKYYASTIDLTGGKNT+A
Sbjct: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGLENLQTAKKYYASTIDLTGGKNTRA 240

Query: 241 LFGICL 246
           LFGICL
Sbjct: 241 LFGICL 246

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542336|ref|XP_002512231.1| conserved hypothetical protein [Ricinus communis] gi|223548192|gb|EEF49683.1| conserved hypothetical protein [Ricinus communis]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/263 (79%), Positives = 231/263 (87%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTKTEETQLNRLE+QV++GGGGAWEYL LV+KLKVRR DKVL++GLSILNDPKKRS LG
Sbjct: 1   MVTKTEETQLNRLESQVEHGGGGAWEYLSLVRKLKVRRSDKVLKYGLSILNDPKKRSGLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
            + WTLYEQV+IAAMDCQ LDVAKDCI VLQK+FPESKRVGRLEG+LLEAKG WAEAEKA
Sbjct: 61  SEEWTLYEQVAIAAMDCQSLDVAKDCITVLQKRFPESKRVGRLEGMLLEAKGSWAEAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           Y+SLLEDN LD V+ KRRVA+AKAQGN   AIE LNKYLE FMAD DAWRELAE+YVSLQ
Sbjct: 121 YASLLEDNQLDQVIFKRRVAVAKAQGNVSGAIELLNKYLEIFMADSDAWRELAEMYVSLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG++N+  AKKYY+STIDLTGG NT+A
Sbjct: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGLENLQAAKKYYSSTIDLTGGMNTRA 240

Query: 241 LFGICLVMFVCHSTTYERAEQGR 263
           LFG+CL        T  R ++ +
Sbjct: 241 LFGVCLCTSAIAQLTKGRNKEDK 263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505014|gb|AFK40573.1| unknown [Medicago truncatula]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/246 (82%), Positives = 222/246 (90%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MVTKTEE++L  LE QVDNGGGGAWEYL LV+KLKVRR DKVL+HGLSILND K RS LG
Sbjct: 1   MVTKTEESELKNLEIQVDNGGGGAWEYLSLVRKLKVRRSDKVLKHGLSILNDSKLRSKLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
            D WTLYEQV++AAMDCQCLDVA+DC K L+K+F ESKRVGRLE +LLEAKG W EAEKA
Sbjct: 61  ADEWTLYEQVAVAAMDCQCLDVAQDCTKALRKRFSESKRVGRLEAMLLEAKGSWEEAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           YSSLLEDNPLD ++HKRRVA+AKAQGN   AIEWLNKYLE FMADHDAWRELAEIY SLQ
Sbjct: 121 YSSLLEDNPLDQIIHKRRVAMAKAQGNISGAIEWLNKYLEIFMADHDAWRELAEIYTSLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQAAFCYEE+IL+QPTVPLYHLAYADVLYT+GG++N+  AKKYYASTIDLTGGKNT+A
Sbjct: 181 MYKQAAFCYEEVILAQPTVPLYHLAYADVLYTIGGLENVQTAKKYYASTIDLTGGKNTRA 240

Query: 241 LFGICL 246
           LFGICL
Sbjct: 241 LFGICL 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442911|ref|XP_004139224.1| PREDICTED: ER membrane protein complex subunit 2-like [Cucumis sativus] gi|449482954|ref|XP_004156453.1| PREDICTED: ER membrane protein complex subunit 2-like [Cucumis sativus]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/263 (76%), Positives = 231/263 (87%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
           MV+K EE +LNRLE QVDNGGGGAW+YLCL++KLKVRR  KVL +GLSILND +KRS LG
Sbjct: 1   MVSKAEEAELNRLETQVDNGGGGAWDYLCLIRKLKVRRSHKVLNYGLSILNDSRKRSGLG 60

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
            + WTLYEQV+IAA+DCQ +DVAKDCIKVLQK+FP+SKRVGRLE +LLEAKGLWAEAEKA
Sbjct: 61  QEEWTLYEQVAIAALDCQAIDVAKDCIKVLQKKFPQSKRVGRLEAMLLEAKGLWAEAEKA 120

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           Y+SLLE+NP D ++HKRRVA+AKAQGN   AIEWLNKYLETFMADHDAWRELAE+Y+SLQ
Sbjct: 121 YASLLEENPCDQIVHKRRVALAKAQGNIAGAIEWLNKYLETFMADHDAWRELAELYISLQ 180

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
           MYKQA FCYEELILSQPTVPL+HLAYADVLYTLGG++N+  AKKYYASTIDLTGGKNT+A
Sbjct: 181 MYKQAVFCYEELILSQPTVPLFHLAYADVLYTLGGLENLQTAKKYYASTIDLTGGKNTRA 240

Query: 241 LFGICLVMFVCHSTTYERAEQGR 263
           LFGICL        T  R ++ +
Sbjct: 241 LFGICLCTSAIAQLTRGRNKEDK 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
TAIR|locus:2114855	303	AT3G04830 [Arabidopsis thalian	0.935	0.811	0.804	5.7e-107
TAIR|locus:2147555	316	AT5G28220 [Arabidopsis thalian	0.935	0.778	0.800	4.6e-105
ZFIN|ZDB-GENE-040625-82	297	emc2 "ER membrane protein comp	0.779	0.690	0.437	3.9e-44
UNIPROTKB|Q5M7J9	297	emc2 "ER membrane protein comp	0.779	0.690	0.432	9.3e-43
UNIPROTKB|Q6INS3	297	emc2-a "ER membrane protein co	0.779	0.690	0.432	9.3e-43
UNIPROTKB|Q8AVU9	297	emc2-b "ER membrane protein co	0.779	0.690	0.427	4e-42
MGI|MGI:1913986	297	Emc2 "ER membrane protein comp	0.828	0.734	0.417	1.1e-41
RGD|1310430	297	Emc2 "ER membrane protein comp	0.828	0.734	0.417	1.4e-41
UNIPROTKB|E1BRW7	297	TTC35 "Uncharacterized protein	0.828	0.734	0.412	2.8e-41
UNIPROTKB|Q15006	297	EMC2 "ER membrane protein comp	0.828	0.734	0.412	4.6e-41

TAIR|locus:2114855 AT3G04830 [Arabidopsis thaliana (taxid:3702)]

 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 198/246 (80%), Positives = 226/246 (91%)

Query:     1 MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
             MVTKTEE QLN+LENQV+NGGGG WEYLCLV+KLKVRR + VL+HGLSILND  KRSALG
Sbjct:     1 MVTKTEEIQLNQLENQVENGGGGVWEYLCLVRKLKVRRSEIVLKHGLSILNDSGKRSALG 60

Query:    61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
             PD WTLYEQV+IAAMDCQ L VA++CIKVL+K+FPESKRVG+LE +LLEAKG+W EAEKA
Sbjct:    61 PDEWTLYEQVAIAAMDCQSLGVAQNCIKVLKKKFPESKRVGKLEALLLEAKGMWEEAEKA 120

Query:   121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
             Y+SLLEDNPLD V+HKR+VA+AKAQG    AIE LNKYLE FMADHDAWRELAEIYVSLQ
Sbjct:   121 YTSLLEDNPLDQVIHKRKVAMAKAQGKSSLAIEHLNKYLEVFMADHDAWRELAEIYVSLQ 180

Query:   181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
             MYKQAAFCYEELIL+QPT+PLYHLAYADVLYT+GG++N++ A+KYYA+TIDLTGGK+T+A
Sbjct:   181 MYKQAAFCYEELILTQPTLPLYHLAYADVLYTIGGLENLIAARKYYAATIDLTGGKSTRA 240

Query:   241 LFGICL 246
             L GICL
Sbjct:   241 LLGICL 246

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2147555 AT5G28220 [Arabidopsis thaliana (taxid:3702)]

 Score = 1040 (371.2 bits), Expect = 4.6e-105, P = 4.6e-105
 Identities = 197/246 (80%), Positives = 219/246 (89%)

Query:     1 MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALG 60
             MVTKTEE QLN+LE QVDNGGGG WEYLCLV+ LKVRR +KVL+HG SILND KKRSALG
Sbjct:    14 MVTKTEEKQLNQLEIQVDNGGGGTWEYLCLVRNLKVRRSEKVLKHGSSILNDQKKRSALG 73

Query:    61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
             PD WTL EQV+IAAMDCQCL VA+ CIK LQ +FP SKRVGRLE +LLEAKGLW EAE+A
Sbjct:    74 PDEWTLNEQVAIAAMDCQCLGVAQSCIKALQTKFPGSKRVGRLEALLLEAKGLWGEAEEA 133

Query:   121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
             Y+SLLEDNPLD  +HKRRVAI+KA G    AIE LNKYLE FMADHDAWRELAE+Y+SLQ
Sbjct:   134 YASLLEDNPLDQAIHKRRVAISKALGKPSIAIELLNKYLELFMADHDAWRELAELYLSLQ 193

Query:   181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240
             MYKQAAFCYEELILSQPTVPLYHLAYA+VLYT+GGV+NI+ A+KYYA+T+DLTGGKNT+A
Sbjct:   194 MYKQAAFCYEELILSQPTVPLYHLAYAEVLYTIGGVENIISARKYYAATVDLTGGKNTRA 253

Query:   241 LFGICL 246
             L GICL
Sbjct:   254 LLGICL 259

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040625-82 emc2 "ER membrane protein complex subunit 2" [Danio rerio (taxid:7955)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 91/208 (43%), Positives = 138/208 (66%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  ++++  G  ++N+    S LG D+W +YEQV IAA+DC   D+A  C++ L++QFP+
Sbjct:    28 RNSEQIVDVGEELINE--HASKLGDDIWIIYEQVMIAALDCSRDDLAWSCLQELKRQFPD 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+ LEA   + +A K Y S+L+D+P +    KR++ I +AQG    AI  LN
Sbjct:    86 SHRVKRLAGMRLEALERYDDANKLYDSILQDDPTNTAARKRKICILRAQGKSSEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW EL+E+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELSELYINEHDYAKAAFCLEELMMTNPHNHLYCEQYAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGI 244
             +N+ LA+KY+A  + L   +N +ALFG+
Sbjct:   206 ENLELARKYFAQALKLNN-RNMRALFGL 232

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5M7J9 emc2 "ER membrane protein complex subunit 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 90/208 (43%), Positives = 134/208 (64%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  + V+  G  ++N+    S LG D+W +YEQV IAA+DC   D+A  C++ L++QFP 
Sbjct:    28 RNSEHVIEVGEELINE--HASKLGDDIWIIYEQVMIAALDCGRDDIAMSCLQELRRQFPG 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+  EA   + +A + Y  +L+D+P +    KR++AI KAQG    AI  LN
Sbjct:    86 SHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAARKRKIAIRKAQGRNAEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL+ P    Y+  +A+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGI 244
             +N+ L++KY++  + L    N +ALFG+
Sbjct:   206 ENLELSRKYFSQALKLNN-HNMRALFGL 232

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

UNIPROTKB|Q6INS3 emc2-a "ER membrane protein complex subunit 2-A" [Xenopus laevis (taxid:8355)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 90/208 (43%), Positives = 134/208 (64%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  + V+  G  ++N+    S LG D+W +YEQV IAA+DC   D+A  C++ L++QFP 
Sbjct:    28 RNSEHVIEVGEELINE--HASKLGDDIWIIYEQVMIAALDCGRDDIAMSCLQELRRQFPG 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+  EA   + +A + Y  +L+D+P +    KR++AI KAQG    AI  LN
Sbjct:    86 SHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAARKRKIAIRKAQGRNSEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL+ P    Y+  +A+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGI 244
             +N+ L++KY++  + L    N +ALFG+
Sbjct:   206 ENLELSRKYFSQALKLNN-HNMRALFGL 232

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

UNIPROTKB|Q8AVU9 emc2-b "ER membrane protein complex subunit 2-B" [Xenopus laevis (taxid:8355)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 89/208 (42%), Positives = 135/208 (64%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  ++++  G  ++N+    S LG DVW +YEQV IAA+DC   D+A  C++ L++QFP 
Sbjct:    28 RNSEQIVDVGEELINE--HASKLGDDVWIIYEQVMIAALDCGRDDIAMSCLQELRRQFPG 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+  EA   + +A + Y  +L+D+P +    KR++AI KAQG    AI  LN
Sbjct:    86 SHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTATRKRKIAIRKAQGRNAEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW ELAE+Y++   Y +AAFC EELIL+ P    Y+  +A+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGI 244
             +N+ L++KY++  + L    + +ALFG+
Sbjct:   206 ENLELSRKYFSQALKLNN-HSMRALFGL 232

GO:0005737 "cytoplasm" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

MGI|MGI:1913986 Emc2 "ER membrane protein complex subunit 2" [Mus musculus (taxid:10090)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 93/223 (41%), Positives = 140/223 (62%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  ++++  G  ++ND    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct:    28 RNSEQIMEVGEELIND--YASKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct:    86 SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKTVEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCHSTTYERA 259
             +N+ L++KY+A  + L   +N +ALFG  L M   H  +  +A
Sbjct:   206 ENLELSRKYFAQALKLNN-RNMRALFG--LYMSASHIASNPKA 245

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0072546 "ER membrane protein complex" evidence=ISO

RGD|1310430 Emc2 "ER membrane protein complex subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 93/223 (41%), Positives = 140/223 (62%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  ++++  G  ++ND    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct:    28 RNSEQIMEVGEELIND--YASKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct:    86 SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCHSTTYERA 259
             +N+ L++KY+A  + L   +N +ALFG  L M   H  +  +A
Sbjct:   206 ENLELSRKYFAQALKLNN-RNMRALFG--LYMSASHIASNPKA 245

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0072546 "ER membrane protein complex" evidence=ISO;ISS

UNIPROTKB|E1BRW7 TTC35 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 92/223 (41%), Positives = 140/223 (62%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  ++++  G  ++N+    S LG D+W +YEQV IAA+DC   D+A  C++ L++QFP 
Sbjct:    28 RNSEQIVDVGEELINE--YASKLGDDIWIIYEQVMIAALDCSRDDLALFCLQELRRQFPG 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+  EA   + +A + Y  +L+++  +    KR++AI KAQG    AI  LN
Sbjct:    86 SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDATNTAARKRKIAIRKAQGKNLEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMANPHNHLYCQQYAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCHSTTYERA 259
             +N+ L++KY+A  + L   +N +ALFG  L M   H  +  +A
Sbjct:   206 ENLELSRKYFAQALKLNN-RNMRALFG--LYMSASHIASNPKA 245

GO:0005739 "mitochondrion" evidence=IEA

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|Q15006 EMC2 "ER membrane protein complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 92/223 (41%), Positives = 140/223 (62%)

Query:    37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
             R  ++++  G  ++N+    S LG D+W +YEQV IAA+D    D+A  C++ L++QFP 
Sbjct:    28 RNSEQIVEVGEELINE--YASKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85

Query:    97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
             S RV RL G+  EA   + +A + Y  +L+++P +    KR++AI KAQG    AI  LN
Sbjct:    86 SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145

Query:   157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
             +YLE F+ D +AW ELAE+Y++   Y +AAFC EEL+++ P   LY   YA+V YT GG+
Sbjct:   146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205

Query:   217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCHSTTYERA 259
             +N+ L++KY+A  + L   +N +ALFG  L M   H  +  +A
Sbjct:   206 ENLELSRKYFAQALKLNN-RNMRALFG--LYMSASHIASNPKA 245

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0072546 "ER membrane protein complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	263
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-07
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	6e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	7e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.001
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.002
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.002

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200
           +    G++  A+E+  K LE    + DA+  LA  Y  L  Y++A   YE+ +   P   
Sbjct: 9   LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68

Query: 201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
             +       Y LG       A + Y   ++L
Sbjct: 69  KAYYNLGLAYYKLG---KYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 24/90 (26%), Positives = 37/90 (41%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
            G L    G + EA + Y   LE +P +   +    A     G +  A+E   K LE   
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELI 193
            +  A+  L   Y  L  Y++A   YE+ +
Sbjct: 66  DNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 4/110 (3%)

Query: 110 AKGLWAEAEKAYSSLLEDNP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD 167
             G    A+K+Y   L  +P  L   L   ++A+A  +  F  A   +++ L     + D
Sbjct: 137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALA--ENRFDEARALIDEVLTADPGNVD 194

Query: 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217
           A     ++ +SL   + A   Y + I  +P      LA A +L   G  +
Sbjct: 195 ALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFE 244

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 38/192 (19%), Positives = 66/192 (34%), Gaps = 8/192 (4%)

Query: 56  RSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRV-GRLEGILLEAKGLW 114
              L P++      + +        + A + ++      P+       L    L   G +
Sbjct: 87  ELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDY 146

Query: 115 AEAEKAYSSLLEDNP---LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-MADHDAWR 170
            EA + Y   LE +P             A+ +A G +  A+E L K L+     D +A  
Sbjct: 147 EEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206

Query: 171 ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230
            L  +Y+ L  Y++A   YE+ +   P         A +L  LG       A +     +
Sbjct: 207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG---RYEEALEALEKAL 263

Query: 231 DLTGGKNTKALF 242
           +L        L 
Sbjct: 264 ELDPDLYNLGLA 275

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 5/193 (2%)

Query: 62  DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRL--EGILLEAKGLWAEAEK 119
           +   L E           L  A + ++   +  P S   G L    + L   G   EA +
Sbjct: 21  EALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALE 80

Query: 120 AYSSLLE--DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA-EIY 176
                LE    P           + +A G +  A+E L K L        A   LA    
Sbjct: 81  LLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140

Query: 177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK 236
             L  Y++A   YE+ +   P +     A   +   L  +     A +     + L    
Sbjct: 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD 200

Query: 237 NTKALFGICLVMF 249
           + +AL  + L+  
Sbjct: 201 DAEALLNLGLLYL 213

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 226
           +A + L      L  Y +A   YE+ +   P     +   A     LG   +   A +  
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLG--KDYEEALEDL 61

Query: 227 ASTIDL 232
              ++L
Sbjct: 62  EKALEL 67

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 3/156 (1%)

Query: 54  KKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL 113
           K+   L PD       ++   +  +  + AK   K LQKQ P++     LEG L   +  
Sbjct: 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718

Query: 114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA 173
           +  A +AY   L+  P      K   A+  A GN   A++ L  +L+T   D      LA
Sbjct: 719 YPAAIQAYRKALKRAPSSQNAIKLHRALL-ASGNTAEAVKTLEAWLKTHPNDAVLRTALA 777

Query: 174 EIYVSLQMYKQAAFCYEELILSQP--TVPLYHLAYA 207
           E+Y++ + Y +A   Y+ ++   P   V L +LA+ 
Sbjct: 778 ELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWL 813

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 13/62 (20%), Positives = 15/62 (24%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
                   G + EA  A  + L   PL              QG    A   L   L    
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 164 AD 165
            D
Sbjct: 63  DD 64

Length = 65

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 13/56 (23%), Positives = 20/56 (35%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160
                  G + EA + Y   LE +P +   +          G +  A+E   K LE
Sbjct: 41  AAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL-QMYKQAAFCY 189
           +    K         G++  AIE   K LE    + +A+  LA  Y+ L + Y++A    
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 190 EELI 193
           E+ +
Sbjct: 62  EKAL 65

Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
KOG3060	289	consensus Uncharacterized conserved protein [Funct	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.94
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.93
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.92
KOG1126	638	consensus DNA-binding cell division cycle control	99.91
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
PRK12370	553	invasion protein regulator; Provisional	99.89
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.89
KOG1125	579	consensus TPR repeat-containing protein [General f	99.88
PRK11189	296	lipoprotein NlpI; Provisional	99.88
KOG1126	638	consensus DNA-binding cell division cycle control	99.88
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.87
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.87
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.87
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.86
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.86
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.86
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.85
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.85
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.85
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.85
PRK12370	553	invasion protein regulator; Provisional	99.84
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.84
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.84
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.83
PLN02789	320	farnesyltranstransferase	99.83
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.82
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.82
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.82
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.82
KOG1125	579	consensus TPR repeat-containing protein [General f	99.82
PLN02789	320	farnesyltranstransferase	99.81
PRK15359	144	type III secretion system chaperone protein SscB;	99.81
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.78
PRK15359	144	type III secretion system chaperone protein SscB;	99.78
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.77
PRK11189	296	lipoprotein NlpI; Provisional	99.77
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.76
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.76
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.76
KOG1129	478	consensus TPR repeat-containing protein [General f	99.75
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.75
KOG2003	840	consensus TPR repeat-containing protein [General f	99.73
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.73
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.73
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.73
KOG1129	478	consensus TPR repeat-containing protein [General f	99.72
PRK14574	822	hmsH outer membrane protein; Provisional	99.72
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.72
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.71
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.71
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.7
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.7
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.7
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.7
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.69
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.68
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.68
KOG2003	840	consensus TPR repeat-containing protein [General f	99.67
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.67
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.66
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.66
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.66
KOG0553	304	consensus TPR repeat-containing protein [General f	99.66
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.66
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.65
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.65
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.64
KOG2076	895	consensus RNA polymerase III transcription factor	99.64
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.63
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.63
PRK14574	822	hmsH outer membrane protein; Provisional	99.62
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.61
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.61
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.6
KOG2076	895	consensus RNA polymerase III transcription factor	99.6
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.6
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.59
KOG0553	304	consensus TPR repeat-containing protein [General f	99.59
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.59
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.59
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.58
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.57
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.56
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.55
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.55
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.55
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.55
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.53
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.53
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.53
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.52
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.52
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.5
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.48
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.46
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.45
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.45
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.45
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.45
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.44
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.43
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.42
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.41
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.41
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.4
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.4
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.4
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.4
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.38
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.38
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.38
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.38
PRK11906	458	transcriptional regulator; Provisional	99.37
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.37
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.36
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.36
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.36
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.36
PLN03218	1060	maturation of RBCL 1; Provisional	99.35
PLN03218	1060	maturation of RBCL 1; Provisional	99.35
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.35
PRK15331	165	chaperone protein SicA; Provisional	99.34
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.33
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.32
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.31
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.3
PRK11906	458	transcriptional regulator; Provisional	99.29
PRK10803	263	tol-pal system protein YbgF; Provisional	99.29
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.28
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.28
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.28
PRK15331	165	chaperone protein SicA; Provisional	99.27
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.27
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.27
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.24
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.24
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.24
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.23
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.23
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.23
PRK10803	263	tol-pal system protein YbgF; Provisional	99.22
PF12688	120	TPR_5: Tetratrico peptide repeat	99.22
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.21
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.2
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.19
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.17
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.16
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.16
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.16
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.16
PF13512	142	TPR_18: Tetratricopeptide repeat	99.13
PF13371	73	TPR_9: Tetratricopeptide repeat	99.1
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.1
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.06
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.05
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.05
PF12688	120	TPR_5: Tetratrico peptide repeat	99.05
PLN03077	857	Protein ECB2; Provisional	99.04
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.04
PLN03077	857	Protein ECB2; Provisional	99.03
PF13371	73	TPR_9: Tetratricopeptide repeat	99.02
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.02
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.02
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.01
PF13512	142	TPR_18: Tetratricopeptide repeat	98.98
KOG4234	271	consensus TPR repeat-containing protein [General f	98.97
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.97
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.97
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.96
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.94
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.92
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.92
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.91
KOG4234	271	consensus TPR repeat-containing protein [General f	98.91
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.9
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.89
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.88
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.87
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.87
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.86
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.86
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.85
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.84
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.84
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.8
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.8
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.8
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.78
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.78
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.78
KOG4555	175	consensus TPR repeat-containing protein [Function	98.76
KOG4555	175	consensus TPR repeat-containing protein [Function	98.74
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.71
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.71
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.71
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.68
PRK04841	903	transcriptional regulator MalT; Provisional	98.66
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.63
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.62
PRK04841	903	transcriptional regulator MalT; Provisional	98.61
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.61
KOG1586	288	consensus Protein required for fusion of vesicles	98.6
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.58
PF13428	44	TPR_14: Tetratricopeptide repeat	98.56
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.53
PF13428	44	TPR_14: Tetratricopeptide repeat	98.53
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.51
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.49
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.48
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.46
KOG2471	696	consensus TPR repeat-containing protein [General f	98.43
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.42
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.4
PF13431	34	TPR_17: Tetratricopeptide repeat	98.39
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.38
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.35
KOG1585	308	consensus Protein required for fusion of vesicles	98.32
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.26
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.26
PF13431	34	TPR_17: Tetratricopeptide repeat	98.26
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.25
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.24
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.24
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.23
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.21
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.2
KOG2471	696	consensus TPR repeat-containing protein [General f	98.17
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.13
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	98.11
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	98.11
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.06
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.05
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.04
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	98.01
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.0
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.99
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.97
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.95
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.92
KOG1585	308	consensus Protein required for fusion of vesicles	97.85
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.83
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.81
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.79
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.79
KOG1586	288	consensus Protein required for fusion of vesicles	97.79
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.78
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.76
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.74
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.7
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.69
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.68
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.68
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.66
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.63
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.62
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.61
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.61
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.6
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.59
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.58
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.54
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.54
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.5
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.46
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.43
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.43
PRK10941	269	hypothetical protein; Provisional	97.43
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.42
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	97.42
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.42
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.41
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.4
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.36
PRK10941	269	hypothetical protein; Provisional	97.34
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.3
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.25
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.19
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.19
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.18
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.18
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.18
KOG1258	577	consensus mRNA processing protein [RNA processing	97.09
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.06
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.03
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.98
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.97
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.95
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.9
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.9
KOG0529	421	consensus Protein geranylgeranyltransferase type I	96.85
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	96.82
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.76
KOG1258	577	consensus mRNA processing protein [RNA processing	96.76
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.7
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.68
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.61
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.6
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.57
KOG1310	758	consensus WD40 repeat protein [General function pr	96.55
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.53
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.52
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.52
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.48
KOG3364	149	consensus Membrane protein involved in organellar	96.4
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.34
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.33
KOG3364	149	consensus Membrane protein involved in organellar	96.32
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.24
KOG1310	758	consensus WD40 repeat protein [General function pr	96.21
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.1
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.1
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.09
KOG2422	665	consensus Uncharacterized conserved protein [Funct	96.03
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.0
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.98
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	95.95
COG2912	269	Uncharacterized conserved protein [Function unknow	95.89
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.89
KOG3616	1636	consensus Selective LIM binding factor [Transcript	95.87
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.81
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.78
KOG0529	421	consensus Protein geranylgeranyltransferase type I	95.77
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	95.61
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.55
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.44
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.43
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.4
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.32
COG2912	269	Uncharacterized conserved protein [Function unknow	95.27
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	95.12
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.07
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	94.98
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.96
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.85
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	94.79
KOG3616	1636	consensus Selective LIM binding factor [Transcript	94.79
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	94.79
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.64
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.52
KOG4014	248	consensus Uncharacterized conserved protein (conta	94.46
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.45
KOG2581	493	consensus 26S proteasome regulatory complex, subun	94.31
KOG2422	665	consensus Uncharacterized conserved protein [Funct	94.25
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	94.21
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.14
COG3947	361	Response regulator containing CheY-like receiver a	94.13
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.04
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.92
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	93.9
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	93.89
COG3947	361	Response regulator containing CheY-like receiver a	93.89
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.71
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.67
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	93.5
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	93.49
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	93.41
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	93.36
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.32
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	93.28
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	93.22
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.15
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.15
KOG2041	1189	consensus WD40 repeat protein [General function pr	93.13
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	93.12
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.97
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	92.84
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	92.6
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	92.56
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	92.54
KOG2581	493	consensus 26S proteasome regulatory complex, subun	92.14
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.55
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	91.29
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.21
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.13
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	91.11
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.03
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	90.98
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	90.43
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.2
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	90.04
KOG2041	1189	consensus WD40 repeat protein [General function pr	89.92
PF12854	34	PPR_1: PPR repeat	89.78
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	89.71
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	89.67
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.65
COG1747	711	Uncharacterized N-terminal domain of the transcrip	89.44
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.21
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.17
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	88.89
PF12854	34	PPR_1: PPR repeat	88.61
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	88.52
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.48
COG4941	415	Predicted RNA polymerase sigma factor containing a	88.12
cd00280	200	TRFH Telomeric Repeat binding Factor or TTAGGG Rep	88.03
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	87.73
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	87.28
PF13041	50	PPR_2: PPR repeat family	87.11
COG1747	711	Uncharacterized N-terminal domain of the transcrip	86.74
KOG2758	432	consensus Translation initiation factor 3, subunit	85.83
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	85.62
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	85.31
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	85.29
COG4941	415	Predicted RNA polymerase sigma factor containing a	84.84
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	84.18
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	83.92
PF13041	50	PPR_2: PPR repeat family	83.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	83.81
KOG3677	525	consensus RNA polymerase I-associated factor - PAF	83.65
smart00299	140	CLH Clathrin heavy chain repeat homology.	83.28
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	82.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	82.56
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	81.39
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	81.31
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	81.27
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	81.12
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	80.97
KOG3783	546	consensus Uncharacterized conserved protein [Funct	80.69
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	80.63
KOG0687	393	consensus 26S proteasome regulatory complex, subun	80.46
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	80.21
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	80.08

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.5e-31  Score=195.93  Aligned_cols=237  Identities=49%  Similarity=0.778  Sum_probs=223.3

Q ss_pred             CcchhhHHHHHHHHhhhcCCCccHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCCh
Q 024712            1 MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCL   80 (263)
Q Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   80 (263)
                      |+++....+.++++.+.+           .||+-..++++++++++..++...+.. .++|+.|.+++++..+.+..|..
T Consensus         1 ~~t~~~~~~~~~l~~~~~-----------~wr~~~~rnseevv~l~~~~~~~~k~~-~~g~e~w~l~EqV~IAAld~~~~   68 (289)
T KOG3060|consen    1 MVTELEDVSWEELRDQMR-----------KWREETVRNSEEVVQLGSEVLNYSKSG-ALGDEIWTLYEQVFIAALDTGRD   68 (289)
T ss_pred             CcchHHHHHHHHHHHHHH-----------HHHhccccCHHHHHHHHHHHHHHhhhc-ccCchHHHHHHHHHHHHHHhcch
Confidence            678888888888887744           789999999999999999999773333 58999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 024712           81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE  160 (263)
Q Consensus        81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  160 (263)
                      +-|..+++++...+|++.++....|..+...|.+++|+++|+..++.+|.+..++.....+...+|+..+|++.+...++
T Consensus        69 ~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~  148 (289)
T KOG3060|consen   69 DLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD  148 (289)
T ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhH
Q 024712          161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  240 (263)
Q Consensus       161 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~  240 (263)
                      .++.|.++|..++.+|+..|+|++|.-|+++++-++|.++..+..+|++++..|..++++-|.++|.++++++|. +.++
T Consensus       149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ra  227 (289)
T KOG3060|consen  149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRA  227 (289)
T ss_pred             HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHH
Confidence            999999999999999999999999999999999999999999999999999999888899999999999999995 9999


Q ss_pred             HHhHHHHHhh
Q 024712          241 LFGICLVMFV  250 (263)
Q Consensus       241 ~~~l~~~~~~  250 (263)
                      ++|+.+|+..
T Consensus       228 l~GI~lc~~~  237 (289)
T KOG3060|consen  228 LFGIYLCGSA  237 (289)
T ss_pred             HHHHHHHHHH
Confidence            9999999765

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.94  E-value=4.9e-25  Score=179.99  Aligned_cols=192  Identities=22%  Similarity=0.248  Sum_probs=182.6

Q ss_pred             cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHH
Q 024712           55 KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL  134 (263)
Q Consensus        55 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  134 (263)
                      +...+.|..+.+|.++|.++-+.|+..+|..+|++++...|+.+++..++|.++...|.+++|..+|.++++..|....+
T Consensus       311 ral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa  390 (966)
T KOG4626|consen  311 RALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAA  390 (966)
T ss_pred             HHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhh
Confidence            45666999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (263)
                      +.++|.+|..+|++++|+.+|+.++++.|..++++.++|+.|..+|+.+.|+.+|.+++..+|...+++.+||.+|...|
T Consensus       391 ~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG  470 (966)
T KOG4626|consen  391 HNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG  470 (966)
T ss_pred             hhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          215 GVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       215 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      +   ..+|+..|+.++++.|+ .+.+.-.+..|..-
T Consensus       471 n---i~~AI~sY~~aLklkPD-fpdA~cNllh~lq~  502 (966)
T KOG4626|consen  471 N---IPEAIQSYRTALKLKPD-FPDAYCNLLHCLQI  502 (966)
T ss_pred             C---cHHHHHHHHHHHccCCC-CchhhhHHHHHHHH
Confidence            9   99999999999999997 77777777777655

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=3.6e-25  Score=180.79  Aligned_cols=175  Identities=19%  Similarity=0.197  Sum_probs=85.2

Q ss_pred             cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH
Q 024712           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK  136 (263)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  136 (263)
                      ..++|....+|.++|.++...+.+++|+..|.+++...|+++.++-++|.+|...|..+-|+..|+++++..|..++++.
T Consensus       245 vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~  324 (966)
T KOG4626|consen  245 VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYN  324 (966)
T ss_pred             hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHh
Confidence            34455555555555555555555555555554444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC
Q 024712          137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV  216 (263)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  216 (263)
                      ++|..+...|+..+|..+|++++.+.|+.+++..+||++|..+|.++.|..+|.+++...|....++.+||.+|...|+ 
T Consensus       325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn-  403 (966)
T KOG4626|consen  325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN-  403 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc-
Confidence            4444444444444444444444444444444444444444444444444444444444444444444444444444444 


Q ss_pred             CcHHHHHHHHHHhhccCC
Q 024712          217 DNILLAKKYYASTIDLTG  234 (263)
Q Consensus       217 ~~~~~A~~~~~~al~~~~  234 (263)
                        +++|+.+|+.++.+.|
T Consensus       404 --l~~Ai~~YkealrI~P  419 (966)
T KOG4626|consen  404 --LDDAIMCYKEALRIKP  419 (966)
T ss_pred             --HHHHHHHHHHHHhcCc
Confidence              4444444444444444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.92  E-value=2.7e-22  Score=174.99  Aligned_cols=191  Identities=14%  Similarity=-0.007  Sum_probs=176.8

Q ss_pred             ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHH
Q 024712           38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA  117 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A  117 (263)
                      ..++++......+..    ....|....++..+|.++...|++++|+..++++++.+|+.+..+..+|.++...|++++|
T Consensus       309 ~y~~A~~~~~~al~~----~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA  384 (615)
T TIGR00990       309 SYEEAARAFEKALDL----GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA  384 (615)
T ss_pred             hHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            344455555544433    1345777888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712          118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  197 (263)
                      +..|++++..+|+++.++..+|.++...|++++|+..|++++.++|++..++..+|.++...|++++|+..|++++...|
T Consensus       385 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P  464 (615)
T TIGR00990       385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP  464 (615)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       198 ~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +++.++..+|.++...|+   +++|+..|++++.++|.
T Consensus       465 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~p~  499 (615)
T TIGR00990       465 EAPDVYNYYGELLLDQNK---FDEAIEKFDTAIELEKE  499 (615)
T ss_pred             CChHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCc
Confidence            999999999999999999   99999999999999886

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.3e-23  Score=172.85  Aligned_cols=188  Identities=17%  Similarity=0.085  Sum_probs=178.5

Q ss_pred             cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (263)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  138 (263)
                      .+|+.+..|..+|.++.-+++++.|+++|+++++.+|+...++..+|.-+....++++|..+|++++..+|.+..+|+.+
T Consensus       416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl  495 (638)
T KOG1126|consen  416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL  495 (638)
T ss_pred             hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence            37788888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCc
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN  218 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  218 (263)
                      |.+|.++++++.|.-.|++|++++|.+..+...+|.++...|+.++|+.+|++|+.++|.++...+..|.+++.+++   
T Consensus       496 G~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~---  572 (638)
T KOG1126|consen  496 GTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR---  572 (638)
T ss_pred             hhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             HHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          219 ILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       219 ~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      +++|+..+++.-++.|+ +...++-++..+..
T Consensus       573 ~~eal~~LEeLk~~vP~-es~v~~llgki~k~  603 (638)
T KOG1126|consen  573 YVEALQELEELKELVPQ-ESSVFALLGKIYKR  603 (638)
T ss_pred             hHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHH
Confidence            99999999999999997 66666666665544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.91  E-value=4.5e-22  Score=144.66  Aligned_cols=189  Identities=16%  Similarity=0.139  Sum_probs=170.9

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  142 (263)
                      ...+..++|..|+..|++..|...++++++.+|++..++..++.+|...|+.+.|-+.|+++++++|++.+++++.|..+
T Consensus        34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL  113 (250)
T COG3063          34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712          143 KAQGNFPTAIEWLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  220 (263)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~  220 (263)
                      +.+|++++|...|++++..  .|..+..|.++|.|..+.|+++.|..+|+++++.+|+++.....++..++..|+   +-
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~---y~  190 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD---YA  190 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc---ch
Confidence            9999999999999999974  456678999999999999999999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHhhccCCCcchhHHHhHHHHHhhchhh
Q 024712          221 LAKKYYASTIDLTGGKNTKALFGICLVMFVCHST  254 (263)
Q Consensus       221 ~A~~~~~~al~~~~~~~~~~~~~l~~~~~~~~~~  254 (263)
                      .|..++++.....+..-...|.|+-+........
T Consensus       191 ~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~  224 (250)
T COG3063         191 PARLYLERYQQRGGAQAESLLLGIRIAKRLGDRA  224 (250)
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHhccHH
Confidence            9999999988776643334445655554443333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=3.1e-21  Score=168.37  Aligned_cols=202  Identities=14%  Similarity=0.120  Sum_probs=171.8

Q ss_pred             ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHH
Q 024712           38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA  117 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A  117 (263)
                      +.++++......+.       ++|.....+..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|
T Consensus       346 ~~~eA~~~~~kal~-------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  418 (615)
T TIGR00990       346 KHLEALADLSKSIE-------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQA  418 (615)
T ss_pred             CHHHHHHHHHHHHH-------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            34444444444443       37888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712          118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  197 (263)
                      +..|++++..+|++..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++.+.|
T Consensus       419 ~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p  498 (615)
T TIGR00990       419 GKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK  498 (615)
T ss_pred             HHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCHHH------HHHHHHHHH-hcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          198 TVPLY------HLAYADVLY-TLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       198 ~~~~~------~~~la~~~~-~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      .+...      +...+.+++ ..|+   +++|...++++++++|+ +..++..++.+...
T Consensus       499 ~~~~~~~~~~~l~~~a~~~~~~~~~---~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~  554 (615)
T TIGR00990       499 ETKPMYMNVLPLINKALALFQWKQD---FIEAENLCEKALIIDPE-CDIAVATMAQLLLQ  554 (615)
T ss_pred             ccccccccHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence            65332      223333333 3688   99999999999999986 66666666665554

>PRK12370 invasion protein regulator; Provisional

Probab=99.89  E-value=1.1e-20  Score=162.40  Aligned_cols=185  Identities=12%  Similarity=-0.017  Sum_probs=164.8

Q ss_pred             cccCcchHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712           57 SALGPDVWTLYEQVSIAAMDC---------QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED  127 (263)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  127 (263)
                      ..++|+...++..+|.++...         +++++|...++++++.+|+++.++..+|.++...|++++|+..|++++++
T Consensus       288 l~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l  367 (553)
T PRK12370        288 VNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL  367 (553)
T ss_pred             HhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            345888888888888776532         45899999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Q 024712          128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAY  206 (263)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  206 (263)
                      +|+++.++..+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+++++... |+++..+..+
T Consensus       368 ~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~l  447 (553)
T PRK12370        368 SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQ  447 (553)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHH
Confidence            999999999999999999999999999999999999998877777777888999999999999999875 7889999999


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHH
Q 024712          207 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGIC  245 (263)
Q Consensus       207 a~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~  245 (263)
                      |.++...|+   +++|...+.+.....|. ...+...+.
T Consensus       448 a~~l~~~G~---~~eA~~~~~~~~~~~~~-~~~~~~~l~  482 (553)
T PRK12370        448 VMFLSLKGK---HELARKLTKEISTQEIT-GLIAVNLLY  482 (553)
T ss_pred             HHHHHhCCC---HHHHHHHHHHhhhccch-hHHHHHHHH
Confidence            999999999   99999999998887775 444444443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.89  E-value=3.9e-20  Score=142.02  Aligned_cols=183  Identities=14%  Similarity=0.133  Sum_probs=167.6

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  141 (263)
                      .....+..++..+...|++++|+..++++++..|++..++..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            45778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcH
Q 024712          142 AKAQGNFPTAIEWLNKYLETF--MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (263)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~  219 (263)
                      +...|++++|+..+++++...  |.....+..+|.++...|++++|...+.+++..+|.++..+..+|.++...|+   +
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~  185 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ---Y  185 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC---H
Confidence            999999999999999999853  55677899999999999999999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHhhccCCCcchhHHHhHHHHH
Q 024712          220 LLAKKYYASTIDLTGGKNTKALFGICLVM  248 (263)
Q Consensus       220 ~~A~~~~~~al~~~~~~~~~~~~~l~~~~  248 (263)
                      ++|...+++++...|. ....++.++.+.
T Consensus       186 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~  213 (234)
T TIGR02521       186 KDARAYLERYQQTYNQ-TAESLWLGIRIA  213 (234)
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            9999999999998765 555555444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.88  E-value=3.9e-21  Score=156.12  Aligned_cols=183  Identities=17%  Similarity=0.121  Sum_probs=169.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP  149 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  149 (263)
                      .|..+++.|++.+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.-.
T Consensus       291 eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  291 EGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence            68889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc-----------------------------------------C--CCHHHHHHHHHHHHhcccHHHHH
Q 024712          150 TAIEWLNKYLETF-----------------------------------------M--ADHDAWRELAEIYVSLQMYKQAA  186 (263)
Q Consensus       150 ~A~~~~~~~l~~~-----------------------------------------p--~~~~~~~~la~~~~~~g~~~~A~  186 (263)
                      +|+.++.+++...                                         |  .++++...||.+|...|+|++|+
T Consensus       371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai  450 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV  450 (579)
T ss_pred             HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence            9999998876643                                         3  35777889999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh--chhhHH
Q 024712          187 FCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV--CHSTTY  256 (263)
Q Consensus       187 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~--~~~~~~  256 (263)
                      .||+.||...|++...|..||-++....+   ..+|+..|.+|+++.|+ ++|++|.|+++|..  |+-.+.
T Consensus       451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~---s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~  518 (579)
T KOG1125|consen  451 DCFEAALQVKPNDYLLWNRLGATLANGNR---SEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAV  518 (579)
T ss_pred             HHHHHHHhcCCchHHHHHHhhHHhcCCcc---cHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHH
Confidence            99999999999999999999999999999   99999999999999997 99999999999766  554443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.88  E-value=5.1e-20  Score=146.31  Aligned_cols=200  Identities=15%  Similarity=0.027  Sum_probs=160.7

Q ss_pred             hHHHHHHHHHhcCcccccccCc-chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHH
Q 024712           40 DKVLRHGLSILNDPKKRSALGP-DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAE  118 (263)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~  118 (263)
                      +..+.....++..    .+++| .....+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus        43 e~~i~~~~~~l~~----~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         43 EVILARLNQILAS----RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             HHHHHHHHHHHcc----ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            4444444455543    23344 457889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh---
Q 024712          119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS---  195 (263)
Q Consensus       119 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---  195 (263)
                      ..|+++++++|++..++.++|.++...|++++|+..++++++.+|+++.... ...+....+++++|+..+.+.+..   
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~  197 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDK  197 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCc
Confidence            9999999999999999999999999999999999999999999999874211 112233456677777777554322   


Q ss_pred             ----------------------------------CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHH
Q 024712          196 ----------------------------------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL  241 (263)
Q Consensus       196 ----------------------------------~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~  241 (263)
                                                        .|..+.+|..+|.++...|+   +++|+.+|+++++.+|...+...
T Consensus       198 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~---~~~A~~~~~~Al~~~~~~~~e~~  274 (296)
T PRK11189        198 EQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD---LDEAAALFKLALANNVYNFVEHR  274 (296)
T ss_pred             cccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCchHHHHH
Confidence                                              22334578889999999999   99999999999999975466666


Q ss_pred             HhHHHH
Q 024712          242 FGICLV  247 (263)
Q Consensus       242 ~~l~~~  247 (263)
                      +.+...
T Consensus       275 ~~~~e~  280 (296)
T PRK11189        275 YALLEL  280 (296)
T ss_pred             HHHHHH
Confidence            655444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=1.3e-21  Score=161.24  Aligned_cols=184  Identities=15%  Similarity=0.115  Sum_probs=167.9

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----------------------------------CCCcHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ----------------------------------FPESKRVGRLEG  105 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------------------------~p~~~~~~~~~a  105 (263)
                      .++...+..++|..|+..++|++|..+|+.+-+.                                  +|+.|..|..+|
T Consensus       349 ~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~G  428 (638)
T KOG1126|consen  349 HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALG  428 (638)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhc
Confidence            4455578889999999999999999999866654                                  445677888999


Q ss_pred             HHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHH
Q 024712          106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA  185 (263)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A  185 (263)
                      .+|..+++++.|+++|++++.++|....++..+|.-+.....++.|..+|++++..+|.+-.+|+.+|.+|.++++++.|
T Consensus       429 NcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~A  508 (638)
T KOG1126|consen  429 NCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFA  508 (638)
T ss_pred             chhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712          186 AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV  247 (263)
Q Consensus       186 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~  247 (263)
                      .-.|++|++++|.+......+|.++...|+   .++|+..|++|+.++|. ++...|..+..
T Consensus       509 e~~fqkA~~INP~nsvi~~~~g~~~~~~k~---~d~AL~~~~~A~~ld~k-n~l~~~~~~~i  566 (638)
T KOG1126|consen  509 EFHFQKAVEINPSNSVILCHIGRIQHQLKR---KDKALQLYEKAIHLDPK-NPLCKYHRASI  566 (638)
T ss_pred             HHHHHhhhcCCccchhHHhhhhHHHHHhhh---hhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence            999999999999999999999999999999   99999999999999996 65555544443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.88  E-value=3e-19  Score=160.06  Aligned_cols=167  Identities=14%  Similarity=-0.017  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA  144 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  144 (263)
                      ..+..+|.++...|++++|...++++++..|+.......++......|++++|+..+++++..+|+ ..++..+|.++..
T Consensus       543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~  621 (987)
T PRK09782        543 EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQ  621 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence            345678889999999999999999999999988877777777777789999999999999999996 8899999999999


Q ss_pred             cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHH
Q 024712          145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK  224 (263)
Q Consensus       145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~  224 (263)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|+   +++|+.
T Consensus       622 lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd---~~eA~~  698 (987)
T PRK09782        622 RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD---MAATQH  698 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999   999999


Q ss_pred             HHHHhhccCCC
Q 024712          225 YYASTIDLTGG  235 (263)
Q Consensus       225 ~~~~al~~~~~  235 (263)
                      +|++++++.|+
T Consensus       699 ~l~~Al~l~P~  709 (987)
T PRK09782        699 YARLVIDDIDN  709 (987)
T ss_pred             HHHHHHhcCCC
Confidence            99999999997

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.87  E-value=1.8e-19  Score=157.40  Aligned_cols=173  Identities=14%  Similarity=-0.007  Sum_probs=81.3

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH---
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK---  136 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~---  136 (263)
                      +|+...++..+|..+...|++++|+..+++++..+|+++.++..++.++...|++++|+..+++++...|+++.++.   
T Consensus       106 ~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~  185 (656)
T PRK15174        106 NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL  185 (656)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44444445555555555555555555555555555555444444444444444444444444444433333322221   


Q ss_pred             -------------------------------HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHH-
Q 024712          137 -------------------------------RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ-  184 (263)
Q Consensus       137 -------------------------------~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~-  184 (263)
                                                     .++.++...|++++|+..++++++.+|+++.++..+|.++...|++++ 
T Consensus       186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA  265 (656)
T PRK15174        186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA  265 (656)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence                                           112333334444444444444444444444444445555555554443 


Q ss_pred             ---HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          185 ---AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       185 ---A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                         |+..|++++..+|+++.++..+|.++...|+   +++|+..++++++++|+
T Consensus       266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~---~~eA~~~l~~al~l~P~  316 (656)
T PRK15174        266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ---NEKAIPLLQQSLATHPD  316 (656)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC
Confidence               4445555555555544444555555555554   55555555555544443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.87  E-value=2.2e-19  Score=156.84  Aligned_cols=204  Identities=9%  Similarity=-0.024  Sum_probs=169.0

Q ss_pred             cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (263)
                      .++...+..+...++..       .|+...++..++...+..|++++|+..+++++..+|+++.++..+|.++...|+++
T Consensus        55 ~g~~~~A~~l~~~~l~~-------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~  127 (656)
T PRK15174         55 KDETDVGLTLLSDRVLT-------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA  127 (656)
T ss_pred             cCCcchhHHHhHHHHHh-------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence            34455555666665555       78889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH-----------------------
Q 024712          116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL-----------------------  172 (263)
Q Consensus       116 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-----------------------  172 (263)
                      +|+..+++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..+                       
T Consensus       128 ~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~  207 (656)
T PRK15174        128 TVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFF  207 (656)
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999988888876655332                       


Q ss_pred             -----------HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHhhccCCCcc
Q 024712          173 -----------AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL----AKKYYASTIDLTGGKN  237 (263)
Q Consensus       173 -----------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~----A~~~~~~al~~~~~~~  237 (263)
                                 +.++...|++++|+..+.+++..+|+++.++..+|.++...|+   +++    |+..|+++++++|+ +
T Consensus       208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~---~~eA~~~A~~~~~~Al~l~P~-~  283 (656)
T PRK15174        208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR---SREAKLQAAEHWRHALQFNSD-N  283 (656)
T ss_pred             CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---chhhHHHHHHHHHHHHhhCCC-C
Confidence                       4455566777777777777777788888888888888888888   764    78888888888886 6


Q ss_pred             hhHHHhHHHHHhh
Q 024712          238 TKALFGICLVMFV  250 (263)
Q Consensus       238 ~~~~~~l~~~~~~  250 (263)
                      ..++..++.....
T Consensus       284 ~~a~~~lg~~l~~  296 (656)
T PRK15174        284 VRIVTLYADALIR  296 (656)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666555554443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=3.1e-20  Score=147.26  Aligned_cols=160  Identities=20%  Similarity=0.109  Sum_probs=155.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 024712           69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF  148 (263)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  148 (263)
                      -+|..|.-.++.++|+.+|+++++++|....+|..+|.-|..+.+...|++.|+++++.+|.+..+|+.+|+.|..++..
T Consensus       335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh  414 (559)
T KOG1155|consen  335 IIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH  414 (559)
T ss_pred             eehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch
Confidence            36777777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712          149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (263)
Q Consensus       149 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~  228 (263)
                      .=|+-+|++++...|+|+..|..||.||.+.++.++|+++|.+++.....+..++..+|.+|..+++   .++|..+|++
T Consensus       415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d---~~eAa~~yek  491 (559)
T KOG1155|consen  415 FYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD---LNEAAQYYEK  491 (559)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh---HHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999   9999999999


Q ss_pred             hhc
Q 024712          229 TID  231 (263)
Q Consensus       229 al~  231 (263)
                      .++
T Consensus       492 ~v~  494 (559)
T KOG1155|consen  492 YVE  494 (559)
T ss_pred             HHH
Confidence            998

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.86  E-value=2.7e-19  Score=165.68  Aligned_cols=199  Identities=15%  Similarity=0.054  Sum_probs=168.4

Q ss_pred             ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH--------------HHHH
Q 024712           38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR--------------VGRL  103 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------------~~~~  103 (263)
                      +.++++......+..       .|+...++..+|.++...|++++|+..|+++++.+|++..              ....
T Consensus       284 ~~~~A~~~l~~aL~~-------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~  356 (1157)
T PRK11447        284 QGGKAIPELQQAVRA-------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ  356 (1157)
T ss_pred             CHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence            344444444444433       7888899999999999999999999999999999987542              1234


Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH--------
Q 024712          104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI--------  175 (263)
Q Consensus       104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~--------  175 (263)
                      .|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..++.+        
T Consensus       357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~  436 (1157)
T PRK11447        357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK  436 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence            578888999999999999999999999999999999999999999999999999999999998776655544        


Q ss_pred             ----------------------------------HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH
Q 024712          176 ----------------------------------YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  221 (263)
Q Consensus       176 ----------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~  221 (263)
                                                        +...|++++|+.+|+++++.+|+++.++..+|.++...|+   +++
T Consensus       437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~---~~~  513 (1157)
T PRK11447        437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ---RSQ  513 (1157)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHH
Confidence                                              4467999999999999999999999999999999999999   999


Q ss_pred             HHHHHHHhhccCCCcchhHHHhHHHH
Q 024712          222 AKKYYASTIDLTGGKNTKALFGICLV  247 (263)
Q Consensus       222 A~~~~~~al~~~~~~~~~~~~~l~~~  247 (263)
                      |+..|+++++.+|+ +...++.+.+.
T Consensus       514 A~~~l~~al~~~P~-~~~~~~a~al~  538 (1157)
T PRK11447        514 ADALMRRLAQQKPN-DPEQVYAYGLY  538 (1157)
T ss_pred             HHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence            99999999999996 66666655443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.86  E-value=6.4e-19  Score=146.07  Aligned_cols=168  Identities=14%  Similarity=0.039  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH-----HHHHHHH
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----VLHKRRV  139 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~  139 (263)
                      .++..+|..+...|++++|+..|+++++..|.+..++..++.++...|++++|++.+++++...|.+.     ..+..+|
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la  187 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA  187 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            34555666666666666666666666665565556666666666666666666666666666555432     1334556


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCCCc
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGVDN  218 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~  218 (263)
                      .++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|+   
T Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~---  264 (389)
T PRK11788        188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD---  264 (389)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC---
Confidence            666666666666666666666666666666666666666666666666666666665554 2345556666666666   


Q ss_pred             HHHHHHHHHHhhccCCC
Q 024712          219 ILLAKKYYASTIDLTGG  235 (263)
Q Consensus       219 ~~~A~~~~~~al~~~~~  235 (263)
                      +++|...++++++..|+
T Consensus       265 ~~~A~~~l~~~~~~~p~  281 (389)
T PRK11788        265 EAEGLEFLRRALEEYPG  281 (389)
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            66666666666666554

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.4e-19  Score=143.56  Aligned_cols=185  Identities=17%  Similarity=0.134  Sum_probs=162.4

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHH----H---------------------------HHHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---SKRVG----R---------------------------LEGIL  107 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~----~---------------------------~~a~~  107 (263)
                      ....+-.+.|.+.....|+++|+..|+.+...+|-   +.+.+    +                           ..|+.
T Consensus       260 ~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNY  339 (559)
T KOG1155|consen  260 NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANY  339 (559)
T ss_pred             ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhH
Confidence            44555566788889999999999999999999982   21111    1                           12445


Q ss_pred             HHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHH
Q 024712          108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF  187 (263)
Q Consensus       108 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~  187 (263)
                      |...++.++|+.+|++++.++|....+|..+|.-|..+++...|+..|++|++++|.|-.+|+.||+.|..++..-=|+-
T Consensus       340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLy  419 (559)
T KOG1155|consen  340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALY  419 (559)
T ss_pred             HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHH
Confidence            56668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      +|++++...|+++..|..||+||.++++   .++|++.|.+++..+. .+..+++.|+..+..
T Consensus       420 YfqkA~~~kPnDsRlw~aLG~CY~kl~~---~~eAiKCykrai~~~d-te~~~l~~LakLye~  478 (559)
T KOG1155|consen  420 YFQKALELKPNDSRLWVALGECYEKLNR---LEEAIKCYKRAILLGD-TEGSALVRLAKLYEE  478 (559)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHhcc---HHHHHHHHHHHHhccc-cchHHHHHHHHHHHH
Confidence            9999999999999999999999999999   9999999999999976 367777777766544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.85  E-value=1.1e-18  Score=133.96  Aligned_cols=189  Identities=20%  Similarity=0.189  Sum_probs=169.8

Q ss_pred             ccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcH
Q 024712           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW  114 (263)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~  114 (263)
                      ...+.+.+.......+..       .|....++..++..+...|++++|+..++++++..|.++.++..+|.++...|++
T Consensus        43 ~~~~~~~A~~~~~~~l~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~  115 (234)
T TIGR02521        43 EQGDLEVAKENLDKALEH-------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY  115 (234)
T ss_pred             HCCCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH
Confidence            345666777766666544       5777888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712          115 AEAEKAYSSLLEDN--PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (263)
Q Consensus       115 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  192 (263)
                      ++|+..+++++...  |.....+..+|.++...|++++|...+.+++..+|.++.++..+|.++...|++++|+..++++
T Consensus       116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  195 (234)
T TIGR02521       116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY  195 (234)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999853  4556788899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712          193 ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       193 l~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~  233 (263)
                      +...|.++..+..++.++...|+   .++|..+.+......
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       196 QQTYNQTAESLWLGIRIARALGD---VAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhhC
Confidence            99999889999999999999999   999999888766553

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.85  E-value=1.1e-18  Score=158.48  Aligned_cols=185  Identities=18%  Similarity=0.152  Sum_probs=167.3

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      .|....++..+|.++...|++++|+..+++++...|++ .....++.++...|++++|+..+++++..+|++..++..+|
T Consensus       699 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la  777 (899)
T TIGR02917       699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALA  777 (899)
T ss_pred             CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            55667778888999999999999999999999998877 66778899999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcH
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~  219 (263)
                      .++...|++++|+..|+++++.+|+++.++..+|.++...|+ .+|+..+++++...|+++..+..+|.++...|+   +
T Consensus       778 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~  853 (899)
T TIGR02917       778 ELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE---A  853 (899)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC---H
Confidence            999999999999999999999999999999999999999999 889999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          220 LLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       220 ~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      ++|..+|+++++.+|. +...++.++.+...
T Consensus       854 ~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~  883 (899)
T TIGR02917       854 DRALPLLRKAVNIAPE-AAAIRYHLALALLA  883 (899)
T ss_pred             HHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence            9999999999999996 66666666655544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.85  E-value=1.5e-18  Score=155.68  Aligned_cols=172  Identities=11%  Similarity=-0.032  Sum_probs=163.2

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      .|+....+..++......|++++|+..++++++..|+ +.++..+|.++...|++++|+..|++++..+|+++.++..+|
T Consensus       572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG  650 (987)
T PRK09782        572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG  650 (987)
T ss_pred             CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5666666666666666779999999999999999996 889999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcH
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~  219 (263)
                      .++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++.+.|++..+....|.+.....+   +
T Consensus       651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~---~  727 (987)
T PRK09782        651 YALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN---F  727 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH---H
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHhhccCCC
Q 024712          220 LLAKKYYASTIDLTGG  235 (263)
Q Consensus       220 ~~A~~~~~~al~~~~~  235 (263)
                      +.|.+.+.+....+|.
T Consensus       728 ~~a~~~~~r~~~~~~~  743 (987)
T PRK09782        728 RRLHEEVGRRWTFSFD  743 (987)
T ss_pred             HHHHHHHHHHhhcCcc
Confidence            9999999999999986

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.85  E-value=4.9e-18  Score=154.23  Aligned_cols=185  Identities=18%  Similarity=0.151  Sum_probs=146.7

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      .|..+.++..++..+...|++++|+..+++++...|.+..++..++.++...|++++|+..+++++..+|.+...+..++
T Consensus       495 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  574 (899)
T TIGR02917       495 EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALA  574 (899)
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHH
Confidence            56667777777888888888888888888888888877777778888888888888888888888887887777777888


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcH
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~  219 (263)
                      .++...|++++|+..+++++...|.++.+|..+|.++...|++++|+.+|+++++.+|.++.++..+|.++...|+   +
T Consensus       575 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~  651 (899)
T TIGR02917       575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN---Y  651 (899)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---H
Confidence            8888888888888888888888888888888888888888888888888888888888888888888888888888   8


Q ss_pred             HHHHHHHHHhhccCCCcchhHHHhHHHHH
Q 024712          220 LLAKKYYASTIDLTGGKNTKALFGICLVM  248 (263)
Q Consensus       220 ~~A~~~~~~al~~~~~~~~~~~~~l~~~~  248 (263)
                      ++|...|+++++.+|+ +...+..++.+.
T Consensus       652 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~  679 (899)
T TIGR02917       652 AKAITSLKRALELKPD-NTEAQIGLAQLL  679 (899)
T ss_pred             HHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence            8888888888888775 555555444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK12370 invasion protein regulator; Provisional

Probab=99.84  E-value=3.2e-19  Score=153.39  Aligned_cols=168  Identities=11%  Similarity=-0.094  Sum_probs=149.6

Q ss_pred             CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 024712           78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF  148 (263)
Q Consensus        78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  148 (263)
                      +++++|+..|+++++.+|+++.++..+|.++...         +++++|+..++++++.+|+++.++..+|.++...|++
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence            4678999999999999999999999999887643         3489999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712          149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (263)
Q Consensus       149 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~  228 (263)
                      ++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.....++.+++..|+   +++|+..+++
T Consensus       355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~---~eeA~~~~~~  431 (553)
T PRK12370        355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG---IDDAIRLGDE  431 (553)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC---HHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998877777878888999   9999999999


Q ss_pred             hhccCCCcchhHHHhHHHHH
Q 024712          229 TIDLTGGKNTKALFGICLVM  248 (263)
Q Consensus       229 al~~~~~~~~~~~~~l~~~~  248 (263)
                      ++..+|+..+.++..++.+.
T Consensus       432 ~l~~~~p~~~~~~~~la~~l  451 (553)
T PRK12370        432 LRSQHLQDNPILLSMQVMFL  451 (553)
T ss_pred             HHHhccccCHHHHHHHHHHH
Confidence            99876332454444444443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.84  E-value=1.7e-18  Score=133.73  Aligned_cols=174  Identities=17%  Similarity=0.053  Sum_probs=154.9

Q ss_pred             ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH-
Q 024712           58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-  133 (263)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-  133 (263)
                      +.++..+..+..+|..++..|++++|+..+++++..+|+++   .+++.+|.++...|++++|+..++++++..|+++. 
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            34556888999999999999999999999999999999876   57799999999999999999999999999998875 


Q ss_pred             --HHHHHHHHHHHc--------CChhHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHhcccHHHHH
Q 024712          134 --LHKRRVAIAKAQ--------GNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMYKQAA  186 (263)
Q Consensus       134 --~~~~l~~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~  186 (263)
                        +++.+|.++...        |++++|+..+++++..+|++...+                 ..+|.+++..|++.+|+
T Consensus       107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~  186 (235)
T TIGR03302       107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI  186 (235)
T ss_pred             HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence              688899999876        789999999999999999986543                 35788899999999999


Q ss_pred             HHHHHHHhhCCCC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          187 FCYEELILSQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       187 ~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      ..+++++...|+.   +.++..+|.++..+|+   +++|..+++......|
T Consensus       187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~---~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       187 NRFETVVENYPDTPATEEALARLVEAYLKLGL---KDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence            9999999997765   5789999999999999   9999998887665544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.84  E-value=1.6e-17  Score=137.66  Aligned_cols=188  Identities=14%  Similarity=0.081  Sum_probs=95.9

Q ss_pred             CChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcC
Q 024712           37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES----KRVGRLEGILLEAKG  112 (263)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~a~~~~~~~  112 (263)
                      ++.+.++......+..       +|+.+.++..++..+...|++++|+.+++.++...+..    ..++..+|.++...|
T Consensus        49 ~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         49 EQPDKAIDLFIEMLKV-------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             CChHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            3344444444444433       34444555555555555555555555555555432211    133445555555555


Q ss_pred             cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHhcccHHHHHH
Q 024712          113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-----DAWRELAEIYVSLQMYKQAAF  187 (263)
Q Consensus       113 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~  187 (263)
                      ++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++...|.+.     ..+..+|.++...|++++|+.
T Consensus       122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  201 (389)
T PRK11788        122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA  201 (389)
T ss_pred             CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            555555555555555555555555555555555555555555555555444432     123345555555555555555


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      +|+++++.+|++..++..+|.++...|+   +++|+..|+++++.+|
T Consensus       202 ~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p  245 (389)
T PRK11788        202 LLKKALAADPQCVRASILLGDLALAQGD---YAAAIEALERVEEQDP  245 (389)
T ss_pred             HHHHHHhHCcCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCh
Confidence            5555555555555555555555555555   5555555555555544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.83  E-value=5.8e-18  Score=156.95  Aligned_cols=186  Identities=16%  Similarity=0.099  Sum_probs=137.9

Q ss_pred             ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH-------------------------------
Q 024712           58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI-------------------------------  106 (263)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~-------------------------------  106 (263)
                      ..+|+...++..+|.++...|++++|+..|+++++.+|++..++..++.                               
T Consensus       379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~  458 (1157)
T PRK11447        379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERS  458 (1157)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3477778888889999999999999999999999999987766554443                               


Q ss_pred             -----------HHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH----
Q 024712          107 -----------LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE----  171 (263)
Q Consensus       107 -----------~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----  171 (263)
                                 .+...|++++|+..|++++..+|+++.++..++.++...|++++|+..++++++.+|.++..++.    
T Consensus       459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~  538 (1157)
T PRK11447        459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLY  538 (1157)
T ss_pred             hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence                       34457899999999999999999999999999999999999999999999998888877655443    


Q ss_pred             ----------------------------------------------------------------------HHHHHHhccc
Q 024712          172 ----------------------------------------------------------------------LAEIYVSLQM  181 (263)
Q Consensus       172 ----------------------------------------------------------------------la~~~~~~g~  181 (263)
                                                                                            +|.++...|+
T Consensus       539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~  618 (1157)
T PRK11447        539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGD  618 (1157)
T ss_pred             HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence                                                                                  4445555566


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712          182 YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV  247 (263)
Q Consensus       182 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~  247 (263)
                      +++|+.+|++++..+|+++.++..++.++...|+   +++|+..|+++++..|+ +...+..++.+
T Consensus       619 ~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~---~~eA~~~l~~ll~~~p~-~~~~~~~la~~  680 (1157)
T PRK11447        619 YAAARAAYQRVLTREPGNADARLGLIEVDIAQGD---LAAARAQLAKLPATAND-SLNTQRRVALA  680 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhccCCC-ChHHHHHHHHH
Confidence            6666666666666666666666666666666666   66666666666666554 44444434333

>PLN02789 farnesyltranstransferase

Probab=99.83  E-value=1.2e-17  Score=132.75  Aligned_cols=211  Identities=13%  Similarity=0.104  Sum_probs=179.6

Q ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCcHHHH
Q 024712           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQKQFPESKRVG  101 (263)
Q Consensus        23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~  101 (263)
                      .++.+++.+..... ..+.++.....++..       +|+...+|...+.++...| ++++++..+++++..+|++..+|
T Consensus        38 ~a~~~~ra~l~~~e-~serAL~lt~~aI~l-------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW  109 (320)
T PLN02789         38 EAMDYFRAVYASDE-RSPRALDLTADVIRL-------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIW  109 (320)
T ss_pred             HHHHHHHHHHHcCC-CCHHHHHHHHHHHHH-------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHh
Confidence            57888888876554 456666666666555       8999999999999998888 68999999999999999999999


Q ss_pred             HHHHHHHHHcCcH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712          102 RLEGILLEAKGLW--AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (263)
Q Consensus       102 ~~~a~~~~~~~~~--~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  179 (263)
                      ..++.++...|+.  ++++.++.++++.+|.+..+|...+.++...|++++++..+.++++.+|.+..+|...+.+....
T Consensus       110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            9999999888874  78899999999999999999999999999999999999999999999999999999999988765


Q ss_pred             ---ccH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCCCcHHHHHHHHHHhhccCCCcchhHHHhHH
Q 024712          180 ---QMY----KQAAFCYEELILSQPTVPLYHLAYADVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGIC  245 (263)
Q Consensus       180 ---g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~  245 (263)
                         |.+    ++++.+..+++..+|++..+|..++.++..    +++   ..+|...+.+++..+|. ...++--|+
T Consensus       190 ~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~---~~~~~~~~~~~~~~~~~-s~~al~~l~  262 (320)
T PLN02789        190 PLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS---DPEVSSVCLEVLSKDSN-HVFALSDLL  262 (320)
T ss_pred             cccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc---chhHHHHHHHhhcccCC-cHHHHHHHH
Confidence               333    578888999999999999999999999988    344   67799999999888775 444443333

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.82  E-value=2.3e-19  Score=142.06  Aligned_cols=165  Identities=25%  Similarity=0.276  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  142 (263)
                      ..+...+..+...++++++...++.+....  |.++.++..+|.++...|++++|+..++++++.+|+++.+...++.++
T Consensus       111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~l  190 (280)
T PF13429_consen  111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLL  190 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            334455666778888888888888877654  567888888889999999999999999999999999888888888888


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHH
Q 024712          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA  222 (263)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A  222 (263)
                      ...|+.+++...+.......|.++..|..+|.++...|++++|+.+|+++++.+|+++.+...+|.++...|+   .++|
T Consensus       191 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~---~~~A  267 (280)
T PF13429_consen  191 IDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR---KDEA  267 (280)
T ss_dssp             CTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred             HHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccc---cccc
Confidence            8888888888888888888888888888889999999999999999999998899999888899999999998   8888


Q ss_pred             HHHHHHhhcc
Q 024712          223 KKYYASTIDL  232 (263)
Q Consensus       223 ~~~~~~al~~  232 (263)
                      ...+++++..
T Consensus       268 ~~~~~~~~~~  277 (280)
T PF13429_consen  268 LRLRRQALRL  277 (280)
T ss_dssp             ----------
T ss_pred             cccccccccc
Confidence            8888887653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=5e-18  Score=137.83  Aligned_cols=204  Identities=17%  Similarity=0.163  Sum_probs=152.1

Q ss_pred             CChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHH
Q 024712           37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE  116 (263)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~  116 (263)
                      ++......++..+.+.       .|..+-.|..+|..|+..|++.+|+++|.++...+|....+|...|..+...|+.++
T Consensus       292 ~~~n~Lf~lsh~LV~~-------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQ  364 (611)
T KOG1173|consen  292 GKSNKLFLLSHKLVDL-------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQ  364 (611)
T ss_pred             cccchHHHHHHHHHHh-------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHH
Confidence            3344555555555544       777777788888888888888888888888888888877777777776655555555


Q ss_pred             HHHHHHHH----------------------------------HhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 024712          117 AEKAYSSL----------------------------------LEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF  162 (263)
Q Consensus       117 A~~~~~~~----------------------------------~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  162 (263)
                      |+..|..+                                  +.+.|.++.++..+|.+.+..+.+.+|..+|+.++..-
T Consensus       365 AmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i  444 (611)
T KOG1173|consen  365 AMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI  444 (611)
T ss_pred             HHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence            55555544                                  55566666666666666666666777777776666321


Q ss_pred             ----CC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          163 ----MA---DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       163 ----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                          +.   -...+.+||.++.+++.+++|+.+|++++.+.|.++.++..+|.+|..+|+   ++.|+.+|.+++-++|+
T Consensus       445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn---ld~Aid~fhKaL~l~p~  521 (611)
T KOG1173|consen  445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN---LDKAIDHFHKALALKPD  521 (611)
T ss_pred             hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC---hHHHHHHHHHHHhcCCc
Confidence                11   123477899999999999999999999999999999999999999999999   99999999999999997


Q ss_pred             -cchhHHHhHHHHHhh
Q 024712          236 -KNTKALFGICLVMFV  250 (263)
Q Consensus       236 -~~~~~~~~l~~~~~~  250 (263)
                       ..+....+.++--..
T Consensus       522 n~~~~~lL~~aie~~~  537 (611)
T KOG1173|consen  522 NIFISELLKLAIEDSE  537 (611)
T ss_pred             cHHHHHHHHHHHHhhh
Confidence             245556666655433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.3e-18  Score=138.95  Aligned_cols=176  Identities=16%  Similarity=0.117  Sum_probs=136.7

Q ss_pred             cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH
Q 024712           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK  136 (263)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  136 (263)
                      +.+.|.....|..++..|.+..+..+....|+.+...+|.++.+++.+|.+++-.+++++|+..|+++++++|++..++.
T Consensus       353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i  432 (606)
T KOG0547|consen  353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI  432 (606)
T ss_pred             HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence            44466666667778888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHH
Q 024712          137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT------VPLYHLAYADVL  210 (263)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~  210 (263)
                      .++...++++++.++...|+.+...+|+.++++...|.++..+++|++|++.|.+++.+.|.      ++..+.+-|.+.
T Consensus       433 Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~  512 (606)
T KOG0547|consen  433 QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV  512 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence            88888888888888888888888888888888888888888888888888888888888877      444444444433


Q ss_pred             Hh-cCCCCcHHHHHHHHHHhhccCCC
Q 024712          211 YT-LGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       211 ~~-~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .+ .++   +..|++.++++++++|.
T Consensus       513 ~qwk~d---~~~a~~Ll~KA~e~Dpk  535 (606)
T KOG0547|consen  513 LQWKED---INQAENLLRKAIELDPK  535 (606)
T ss_pred             hchhhh---HHHHHHHHHHHHccCch
Confidence            33 245   77777777777777775

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.9e-18  Score=138.06  Aligned_cols=211  Identities=17%  Similarity=0.057  Sum_probs=187.2

Q ss_pred             ccHHHHHHHHHHhccCChhHHHHHHHHHhcCcc---------cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 024712           22 GGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPK---------KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK   92 (263)
Q Consensus        22 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   92 (263)
                      .++..-+.......+......+..+...+....         ....++|+++++|...|.+.+-.+++++|+.-|++++.
T Consensus       343 ~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~  422 (606)
T KOG0547|consen  343 LGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS  422 (606)
T ss_pred             hhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            466777777777787777767776666654432         23556999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------CH
Q 024712           93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------DH  166 (263)
Q Consensus        93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~  166 (263)
                      ++|.+...+..++...++.++++++...|+.+...-|+.+.++...|.++..++++++|++.|.+++++.|.      ++
T Consensus       423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~  502 (606)
T KOG0547|consen  423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA  502 (606)
T ss_pred             cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999      66


Q ss_pred             HHHHHHHHHHHh-cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          167 DAWRELAEIYVS-LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       167 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ..+...|.+..+ .+++..|+.++.++++++|....++..||.+..+.|+   .++|+++|+++..+...
T Consensus       503 ~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~---i~eAielFEksa~lArt  569 (606)
T KOG0547|consen  503 APLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK---IDEAIELFEKSAQLART  569 (606)
T ss_pred             hhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHh
Confidence            666666655544 5899999999999999999999999999999999999   99999999999887543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=1.6e-18  Score=141.07  Aligned_cols=173  Identities=15%  Similarity=0.168  Sum_probs=160.9

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc------------
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED------------  127 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------  127 (263)
                      +|....+|..||.+....++-..|+..++++++++|++..++..||..|...|.-.+|+.++.+-+..            
T Consensus       315 dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~  394 (579)
T KOG1125|consen  315 DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE  394 (579)
T ss_pred             ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc
Confidence            89999999999999999999999999999999999999999999999999888888888887777542            


Q ss_pred             -----------------------------CC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712          128 -----------------------------NP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (263)
Q Consensus       128 -----------------------------~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  176 (263)
                                                   .|  .++++...||.+|...|+|++|+.+|+.+|...|++...|..||..+
T Consensus       395 ~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL  474 (579)
T KOG1125|consen  395 NEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATL  474 (579)
T ss_pred             cccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence                                         33  34677888999999999999999999999999999999999999999


Q ss_pred             HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ....+..+|+..|.+|+++.|.+..++++||.+++.+|.   |++|.++|-.+|.+.+.
T Consensus       475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~---ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA---YKEAVKHLLEALSMQRK  530 (579)
T ss_pred             cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh---HHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999999   99999999999988653

>PLN02789 farnesyltranstransferase

Probab=99.81  E-value=1.6e-17  Score=132.10  Aligned_cols=188  Identities=16%  Similarity=0.069  Sum_probs=162.8

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHKRR  138 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l  138 (263)
                      .|+...++..+-.++...+..++|+..+.++++.+|++..+|..++.++...| ++++++..+.+++..+|++..+|...
T Consensus        33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R  112 (320)
T PLN02789         33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR  112 (320)
T ss_pred             CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence            44555555555556677889999999999999999999999999999999998 68999999999999999999999999


Q ss_pred             HHHHHHcCCh--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc---
Q 024712          139 VAIAKAQGNF--PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL---  213 (263)
Q Consensus       139 ~~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---  213 (263)
                      +.++...|+.  ++++.+++++++.+|.+..+|...+.++...|++++++.++.++++.+|.+..+|...+.++...   
T Consensus       113 ~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l  192 (320)
T PLN02789        113 RWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL  192 (320)
T ss_pred             HHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence            9999988874  67899999999999999999999999999999999999999999999999999999999998876   


Q ss_pred             CCC-CcHHHHHHHHHHhhccCCCcchhHHHhHHHHH
Q 024712          214 GGV-DNILLAKKYYASTIDLTGGKNTKALFGICLVM  248 (263)
Q Consensus       214 g~~-~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~  248 (263)
                      |.. ...++++.+..+++.++|+ +..+|..+.-+.
T Consensus       193 ~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll  227 (320)
T PLN02789        193 GGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLF  227 (320)
T ss_pred             ccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHH
Confidence            331 1135788888999999997 666665444443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.81  E-value=1.8e-18  Score=122.51  Aligned_cols=127  Identities=14%  Similarity=0.046  Sum_probs=103.2

Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 024712           84 KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM  163 (263)
Q Consensus        84 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  163 (263)
                      ...++++++.+|++   +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            35677788777764   445788888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 024712          164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (263)
Q Consensus       164 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (263)
                      +++.+++.+|.++...|++++|+..|.+++...|+++..+..++.+....
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888887777665543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.78  E-value=4.5e-18  Score=134.68  Aligned_cols=184  Identities=20%  Similarity=0.094  Sum_probs=119.3

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--CCCHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLDPVLHKR  137 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~  137 (263)
                      ++..+..+..++.. ...+++++|..++.++.+.++ ++..+.....++...++++++...++++....  +.++..+..
T Consensus        74 ~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  151 (280)
T PF13429_consen   74 DKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLA  151 (280)
T ss_dssp             ----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHH
T ss_pred             cccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence            45556666666666 688999999999999887664 56667777888999999999999999987654  677889999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCC
Q 024712          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD  217 (263)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  217 (263)
                      +|.++...|++++|+..++++++.+|+++.++..++.++...|+++++...+.......|.++..+..+|.++..+|+  
T Consensus       152 ~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~--  229 (280)
T PF13429_consen  152 LAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR--  229 (280)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--
Confidence            999999999999999999999999999999999999999999999999999999988889999999999999999999  


Q ss_pred             cHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          218 NILLAKKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                       +++|+.+|++++..+|+ ++..+..++-+..
T Consensus       230 -~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~  259 (280)
T PF13429_consen  230 -YEEALEYLEKALKLNPD-DPLWLLAYADALE  259 (280)
T ss_dssp             -HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT
T ss_pred             -ccccccccccccccccc-ccccccccccccc
Confidence             99999999999999996 6666665555533

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.78  E-value=1.7e-17  Score=117.63  Aligned_cols=118  Identities=16%  Similarity=0.132  Sum_probs=110.2

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712          118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  197 (263)
                      ...++++++.+|++   +..+|.++...|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|.+++.++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46889999999885   557899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712          198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF  242 (263)
Q Consensus       198 ~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~  242 (263)
                      +++.++.++|.++...|+   +++|+..|.+++.++|+ +...+.
T Consensus        90 ~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~-~~~~~~  130 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYA-DASWSE  130 (144)
T ss_pred             CCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-ChHHHH
Confidence            999999999999999999   99999999999999997 554443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.77  E-value=7.4e-17  Score=120.25  Aligned_cols=151  Identities=9%  Similarity=0.012  Sum_probs=128.1

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 024712           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT  150 (263)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  150 (263)
                      +..|+..|+++......+...  .|..         -+...++.++++..+++++..+|++...|..+|.++...|++++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~   91 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN   91 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence            445777888877543332211  1211         11126777899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHH-Hhccc--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 024712          151 AIEWLNKYLETFMADHDAWRELAEIY-VSLQM--YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA  227 (263)
Q Consensus       151 A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~  227 (263)
                      |+..|+++++++|+++.++..+|.++ ...|+  +++|...++++++.+|+++.++..+|.+++..|+   +++|+.+|+
T Consensus        92 A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~---~~~Ai~~~~  168 (198)
T PRK10370         92 ALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD---YAQAIELWQ  168 (198)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC---HHHHHHHHH
Confidence            99999999999999999999999975 67777  5999999999999999999999999999999999   999999999


Q ss_pred             HhhccCCC
Q 024712          228 STIDLTGG  235 (263)
Q Consensus       228 ~al~~~~~  235 (263)
                      ++++++|.
T Consensus       169 ~aL~l~~~  176 (198)
T PRK10370        169 KVLDLNSP  176 (198)
T ss_pred             HHHhhCCC
Confidence            99999887

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.77  E-value=1.5e-16  Score=126.46  Aligned_cols=154  Identities=17%  Similarity=0.042  Sum_probs=134.2

Q ss_pred             cCChHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 024712           77 CQCLDVAKDCIKVLQKQFP----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI  152 (263)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  152 (263)
                      .+..+.++..+.+++...|    ..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3566778888888887544    346779999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          153 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       153 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      ..|+++++++|++..+|..+|.++...|++++|+..++++++.+|+++..... ..+....++   +++|+..|.+++..
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~---~~~A~~~l~~~~~~  194 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLD---PKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCC---HHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999742221 223445677   99999999877655


Q ss_pred             CC
Q 024712          233 TG  234 (263)
Q Consensus       233 ~~  234 (263)
                      .+
T Consensus       195 ~~  196 (296)
T PRK11189        195 LD  196 (296)
T ss_pred             CC
Confidence            33

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.76  E-value=5.9e-16  Score=134.32  Aligned_cols=159  Identities=16%  Similarity=0.128  Sum_probs=146.8

Q ss_pred             ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 024712           79 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY  158 (263)
Q Consensus        79 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  158 (263)
                      ...+++.-+......+|+++.+++++|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..++++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~  146 (694)
T PRK15179         67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY  146 (694)
T ss_pred             chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            44455555666677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcch
Q 024712          159 LETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT  238 (263)
Q Consensus       159 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~  238 (263)
                      +..+|+++.+.+.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+   .++|...|+++++...+ -.
T Consensus       147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~-~~  222 (694)
T PRK15179        147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGD-GA  222 (694)
T ss_pred             hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCc-ch
Confidence            999999999999999999999999999999999999999999999999999999999   99999999999998664 34


Q ss_pred             hHH
Q 024712          239 KAL  241 (263)
Q Consensus       239 ~~~  241 (263)
                      +.+
T Consensus       223 ~~~  225 (694)
T PRK15179        223 RKL  225 (694)
T ss_pred             HHH
Confidence            443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.76  E-value=7.9e-16  Score=112.36  Aligned_cols=188  Identities=19%  Similarity=0.068  Sum_probs=165.0

Q ss_pred             ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHH
Q 024712           38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA  117 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A  117 (263)
                      +...+....+..+..       +|....+|.-++.+|...|+.+.|.+.|++++...|++.+++.+.|..+...|++++|
T Consensus        50 d~~~A~~nlekAL~~-------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA  122 (250)
T COG3063          50 DYAQAKKNLEKALEH-------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA  122 (250)
T ss_pred             CHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence            344444444444444       8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712          118 EKAYSSLLED--NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       118 ~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  195 (263)
                      ...|++++..  .|..+.++.++|.|..+.|+++.|...|+++++.+|+.+.....++...+..|+|-.|..++++....
T Consensus       123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~  202 (250)
T COG3063         123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQR  202 (250)
T ss_pred             HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence            9999999973  23456799999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          196 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       196 ~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .+-....+.....+--..|+   -+.+-.+=.+.....|.
T Consensus       203 ~~~~A~sL~L~iriak~~gd---~~~a~~Y~~qL~r~fP~  239 (250)
T COG3063         203 GGAQAESLLLGIRIAKRLGD---RAAAQRYQAQLQRLFPY  239 (250)
T ss_pred             ccccHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCC
Confidence            88777777777788888999   77777777666677775

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.76  E-value=1.6e-16  Score=118.40  Aligned_cols=125  Identities=16%  Similarity=0.061  Sum_probs=118.1

Q ss_pred             cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--hhHHHH
Q 024712           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA-KAQGN--FPTAIE  153 (263)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~--~~~A~~  153 (263)
                      .++.++++..+++.+..+|+++..|..+|.++...|++++|+..|++++..+|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            567789999999999999999999999999999999999999999999999999999999999975 67777  599999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712          154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                      .++++++.+|+++.+++.+|..++..|++++|+.+|+++++..|.+..
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999999999999999999887654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.75  E-value=5.7e-17  Score=124.00  Aligned_cols=182  Identities=13%  Similarity=0.039  Sum_probs=158.8

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  141 (263)
                      ..++.+..++.+|.+..+...|+..+...++.+|.++......+.++..++++++|.++|+.+++.+|.+.++...+|.-
T Consensus       254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~  333 (478)
T KOG1129|consen  254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG  333 (478)
T ss_pred             CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence            34677788899999999999999999999999999999999999999999999999999999999999998888888888


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhcCCCCc
Q 024712          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT---VPLYHLAYADVLYTLGGVDN  218 (263)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~  218 (263)
                      |+-.++++-|+.+|++.++..-.+++.+.++|.|++..++++-++.+|++++....+   -.++|+++|.+....|+   
T Consensus       334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD---  410 (478)
T KOG1129|consen  334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD---  410 (478)
T ss_pred             cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc---
Confidence            888899999999999999998889999999999999999999999999988866432   25688999999888899   


Q ss_pred             HHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712          219 ILLAKKYYASTIDLTGGKNTKALFGICLV  247 (263)
Q Consensus       219 ~~~A~~~~~~al~~~~~~~~~~~~~l~~~  247 (263)
                      +.-|...|+-++..+++ ...++.+|++.
T Consensus       411 ~nlA~rcfrlaL~~d~~-h~ealnNLavL  438 (478)
T KOG1129|consen  411 FNLAKRCFRLALTSDAQ-HGEALNNLAVL  438 (478)
T ss_pred             hHHHHHHHHHHhccCcc-hHHHHHhHHHH
Confidence            89999999988888885 66777766655

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.75  E-value=1.1e-15  Score=136.36  Aligned_cols=163  Identities=10%  Similarity=-0.048  Sum_probs=149.4

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-------------C-
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQKQFPES----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------------D-  131 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-------------~-  131 (263)
                      ++.+++..|++++|+..|+++++..|.+    ......++..+...|++++|+..++++....|.             + 
T Consensus       278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~  357 (765)
T PRK10049        278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD  357 (765)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence            5889999999999999999999888765    345667777889999999999999999988763             1 


Q ss_pred             -HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024712          132 -PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (263)
Q Consensus       132 -~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (263)
                       ..++..++.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a  437 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA  437 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence             3467789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          211 YTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       211 ~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ...|+   +++|...++++++..|+
T Consensus       438 l~~~~---~~~A~~~~~~ll~~~Pd  459 (765)
T PRK10049        438 LDLQE---WRQMDVLTDDVVAREPQ  459 (765)
T ss_pred             HHhCC---HHHHHHHHHHHHHhCCC
Confidence            99999   99999999999999997

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.73  E-value=1.9e-15  Score=120.62  Aligned_cols=186  Identities=17%  Similarity=0.112  Sum_probs=163.1

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (263)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  140 (263)
                      .....+++++|..+-..|++++|+++|-++...--+++.+++.++.+|..+.+...|++++-++.++-|+++.++..++.
T Consensus       521 asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~d  600 (840)
T KOG2003|consen  521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLAD  600 (840)
T ss_pred             hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence            34567777888888888999999999888888777888899999999999999999999999999999999999999999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  220 (263)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~  220 (263)
                      +|-+.|+-.+|.+++-...+.+|.+.+....||..|....-+++|+.+|+++--+.|+.......++.|+...|+   |+
T Consensus       601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn---yq  677 (840)
T KOG2003|consen  601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN---YQ  677 (840)
T ss_pred             HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc---HH
Confidence            999999999999999888899999999888899999999999999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          221 LAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       221 ~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      +|...|+..-...|. ++.-+..|...+..
T Consensus       678 ka~d~yk~~hrkfpe-dldclkflvri~~d  706 (840)
T KOG2003|consen  678 KAFDLYKDIHRKFPE-DLDCLKFLVRIAGD  706 (840)
T ss_pred             HHHHHHHHHHHhCcc-chHHHHHHHHHhcc
Confidence            999999999888886 66666666555544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.73  E-value=3.4e-15  Score=114.05  Aligned_cols=171  Identities=16%  Similarity=0.069  Sum_probs=144.1

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH-----HHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----VLHK  136 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~  136 (263)
                      ....+..++|..|+..|-++.|..+|..+.+...--..+...+..+|....+|++|++.-++..+..+...     ..+.
T Consensus       105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC  184 (389)
T COG2956         105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC  184 (389)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence            35566778888888889999999998888775545566788888899999999999999998888877653     3566


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCC
Q 024712          137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGG  215 (263)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~  215 (263)
                      .++..+....+.+.|...+.++++.+|++..+-..+|.+....|+|++|++.++.+++.+|.. +.+...|..||..+|+
T Consensus       185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~  264 (389)
T COG2956         185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK  264 (389)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence            777777778889999999999999999999998999999999999999999999999999887 5678888899999999


Q ss_pred             CCcHHHHHHHHHHhhccCCC
Q 024712          216 VDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       216 ~~~~~~A~~~~~~al~~~~~  235 (263)
                         .++...++.++.+.+++
T Consensus       265 ---~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         265 ---PAEGLNFLRRAMETNTG  281 (389)
T ss_pred             ---HHHHHHHHHHHHHccCC
Confidence               89999999999888876

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.73  E-value=3.3e-15  Score=114.15  Aligned_cols=213  Identities=15%  Similarity=0.105  Sum_probs=178.1

Q ss_pred             HHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----cHHHH
Q 024712           27 YLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-----SKRVG  101 (263)
Q Consensus        27 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~  101 (263)
                      |+.-+.-.-...+++++++...++..       +|+..++...+|..+.+-|+.+.|+++-+.+++. |+     ...+.
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~-------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl  110 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQE-------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLAL  110 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhc-------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence            33333333445677888888888776       8888999999999999999999999998877764 53     33567


Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-----HHHHHHHHHHH
Q 024712          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-----HDAWRELAEIY  176 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~  176 (263)
                      ..+|.-|...|-++.|...|.........-..+...+..+|....+|++|+...++...+.|.+     +..+..++..+
T Consensus       111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~  190 (389)
T COG2956         111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA  190 (389)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence            8899999999999999999999988665566889999999999999999999999999998876     45677888888


Q ss_pred             HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      ....+.+.|+..+.++++.+|+...+-..+|.++...|+   +++|++.++++++.||..-....-.|..|+-.
T Consensus       191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~---y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~  261 (389)
T COG2956         191 LASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD---YQKAVEALERVLEQNPEYLSEVLEMLYECYAQ  261 (389)
T ss_pred             hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc---hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999   99999999999999997222333344444433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.73  E-value=1.6e-15  Score=135.31  Aligned_cols=166  Identities=10%  Similarity=-0.007  Sum_probs=153.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  143 (263)
                      +........++.-.|+.++|+..+.++....|....++..+|.++...|++++|+..+++++..+|.++.++..++.++.
T Consensus        15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~   94 (765)
T PRK10049         15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA   94 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            33334445556778999999999999998889899999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 024712          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK  223 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~  223 (263)
                      ..|++++|+..++++++.+|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...|.   .++|+
T Consensus        95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~---~e~Al  170 (765)
T PRK10049         95 DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL---SAPAL  170 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---hHHHH
Confidence            999999999999999999999999 99999999999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHhhccCC
Q 024712          224 KYYASTIDLTG  234 (263)
Q Consensus       224 ~~~~~al~~~~  234 (263)
                      ..++++.. .|
T Consensus       171 ~~l~~~~~-~p  180 (765)
T PRK10049        171 GAIDDANL-TP  180 (765)
T ss_pred             HHHHhCCC-CH
Confidence            99998776 54

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.72  E-value=4.5e-16  Score=119.15  Aligned_cols=202  Identities=15%  Similarity=0.048  Sum_probs=176.2

Q ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q 024712           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGR  102 (263)
Q Consensus        23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  102 (263)
                      +-+.+|.+...+- ..+..++......++.       -|.+......++.++-..++.++|.++|+.+++.+|.+.++..
T Consensus       257 dTfllLskvY~ri-dQP~~AL~~~~~gld~-------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA  328 (478)
T KOG1129|consen  257 DTFLLLSKVYQRI-DQPERALLVIGEGLDS-------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA  328 (478)
T ss_pred             hHHHHHHHHHHHh-ccHHHHHHHHhhhhhc-------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee
Confidence            4444444444332 3344444444444444       5667777888899999999999999999999999999999999


Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhc
Q 024712          103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM---ADHDAWRELAEIYVSL  179 (263)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~  179 (263)
                      ..|.-|+..++.+-|+.+|++++...-.++..+.++|.|++..+.++-++..|++++..-.   .-.++|+++|.+....
T Consensus       329 cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i  408 (478)
T KOG1129|consen  329 CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI  408 (478)
T ss_pred             eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEec
Confidence            9999999999999999999999999999999999999999999999999999999998643   2368999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       180 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      |++.-|..+|+-++..+|++..++.+||.+-...|+   ..+|..++..+-..+|+
T Consensus       409 GD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~---i~~Arsll~~A~s~~P~  461 (478)
T KOG1129|consen  409 GDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD---ILGARSLLNAAKSVMPD  461 (478)
T ss_pred             cchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc---hHHHHHHHHHhhhhCcc
Confidence            999999999999999999999999999999999999   99999999999999997

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.72  E-value=3e-15  Score=132.22  Aligned_cols=190  Identities=11%  Similarity=-0.049  Sum_probs=160.3

Q ss_pred             ccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHH
Q 024712           56 RSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH  135 (263)
Q Consensus        56 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  135 (263)
                      .....|..+......+...++.|+++.|+..|+++++.+|.++....-+..++...|+.++|+.++++++...|......
T Consensus        26 ~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l  105 (822)
T PRK14574         26 GFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL  105 (822)
T ss_pred             ccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence            34567788888888999999999999999999999999999864434778888888999999999999995445555566


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          136 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      ..+|.++...|++++|+..|+++++.+|+++.++..++..+...++.++|+..++++...+|.+... ..++.++...++
T Consensus       106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~  184 (822)
T PRK14574        106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR  184 (822)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch
Confidence            6668899999999999999999999999999999999999999999999999999999999986554 555555555666


Q ss_pred             CCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          216 VDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       216 ~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                         ..+|+..|+++++.+|+ +...+..+......
T Consensus       185 ---~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~  215 (822)
T PRK14574        185 ---NYDALQASSEAVRLAPT-SEEVLKNHLEILQR  215 (822)
T ss_pred             ---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence               77799999999999997 66666655555443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.72  E-value=2.2e-15  Score=112.19  Aligned_cols=167  Identities=14%  Similarity=0.032  Sum_probs=154.9

Q ss_pred             cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (263)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  138 (263)
                      .+|+...+ ...+..+...|+-+.+..+..++...+|.+..+...+|...+..|+|..|+..++++....|++..+|..+
T Consensus        62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l  140 (257)
T COG5010          62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL  140 (257)
T ss_pred             cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence            36777777 88888889999999999999999989999988888899999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCc
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN  218 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  218 (263)
                      |.+|.+.|++++|...|.+++++.|+++.+..++|..+...|+++.|..++..+....+.+..+..+++.+....|+   
T Consensus       141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~---  217 (257)
T COG5010         141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD---  217 (257)
T ss_pred             HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC---
Confidence            99999999999999999999999999999999999999999999999999999999989899999999999999999   


Q ss_pred             HHHHHHHHHHh
Q 024712          219 ILLAKKYYAST  229 (263)
Q Consensus       219 ~~~A~~~~~~a  229 (263)
                      +++|...-..-
T Consensus       218 ~~~A~~i~~~e  228 (257)
T COG5010         218 FREAEDIAVQE  228 (257)
T ss_pred             hHHHHhhcccc
Confidence            99998766543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.71  E-value=1.7e-15  Score=130.06  Aligned_cols=187  Identities=21%  Similarity=0.193  Sum_probs=151.6

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH----------------------------------
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEG----------------------------------  105 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a----------------------------------  105 (263)
                      .|...+.+..++-.....++..+|...++.+++.+..++.++..+|                                  
T Consensus       526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia  605 (1018)
T KOG2002|consen  526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA  605 (1018)
T ss_pred             CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence            5555555555554445555555666666666655555555555554                                  


Q ss_pred             --HHHHH------------cCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH
Q 024712          106 --ILLEA------------KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE  171 (263)
Q Consensus       106 --~~~~~------------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  171 (263)
                        +++++            .+.+++|++.|.+++..+|.|..+-..+|.++...|++.+|..+|.++.+...++.++|.+
T Consensus       606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lN  685 (1018)
T KOG2002|consen  606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLN  685 (1018)
T ss_pred             hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeee
Confidence              43332            2567899999999999999999999999999999999999999999999988888999999


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          172 LAEIYVSLQMYKQAAFCYEELILSQ--PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       172 la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                      +|.||..+|+|..|++.|+.+++..  .+++.+...||.+++..|.   +.+|......++...|. ++...+.++++.+
T Consensus       686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~---~~eak~~ll~a~~~~p~-~~~v~FN~a~v~k  761 (1018)
T KOG2002|consen  686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK---LQEAKEALLKARHLAPS-NTSVKFNLALVLK  761 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhCCc-cchHHhHHHHHHH
Confidence            9999999999999999999999764  3568899999999999999   99999999999999996 7778888777766


Q ss_pred             h
Q 024712          250 V  250 (263)
Q Consensus       250 ~  250 (263)
                      .
T Consensus       762 k  762 (1018)
T KOG2002|consen  762 K  762 (1018)
T ss_pred             H
Confidence            6

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.71  E-value=1e-14  Score=126.77  Aligned_cols=143  Identities=8%  Similarity=-0.084  Sum_probs=137.2

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      .|....++..+|.+....|.+++|...++.+++..|++..+...++.++.+.+++++|+..+++++..+|++...+..+|
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a  161 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA  161 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            66778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  202 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  202 (263)
                      .++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++....-...
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence            999999999999999999999999999999999999999999999999999999887655444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.70  E-value=1.1e-15  Score=107.55  Aligned_cols=113  Identities=19%  Similarity=0.140  Sum_probs=66.0

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712          120 AYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  199 (263)
Q Consensus       120 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  199 (263)
                      .+++++..+|++......+|..+...|++++|+..+++++..+|.++.+|..+|.++...|++++|+.++++++..+|.+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          200 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       200 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +..+..+|.++...|+   +++|...|+++++++|+
T Consensus        85 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~  117 (135)
T TIGR02552        85 PRPYFHAAECLLALGE---PESALKALDLAIEICGE  117 (135)
T ss_pred             hHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccc
Confidence            5555555555555555   55555555555555554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.70  E-value=1.5e-15  Score=107.03  Aligned_cols=119  Identities=18%  Similarity=0.054  Sum_probs=114.0

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 024712           85 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA  164 (263)
Q Consensus        85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  164 (263)
                      ..+++++...|++..+...+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH
Q 024712          165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (263)
Q Consensus       165 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  203 (263)
                      ++..++.+|.++...|++++|+..++++++.+|++....
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            999999999999999999999999999999999886643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.70  E-value=6.8e-15  Score=126.46  Aligned_cols=188  Identities=14%  Similarity=0.067  Sum_probs=129.1

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  138 (263)
                      .|++...+...|.+.+..++|..|+.+|+.++..+|. -+......|.++..+|+.+.|+..|.++++++|.+..++..|
T Consensus       160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L  239 (1018)
T KOG2002|consen  160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL  239 (1018)
T ss_pred             CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence            6666777777777777788888888888888887773 345566677777777887888888888888777777777777


Q ss_pred             HHHHHHcCC---hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHh
Q 024712          139 VAIAKAQGN---FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLAYADVLYT  212 (263)
Q Consensus       139 ~~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~  212 (263)
                      |.+-....+   +..++..+.++...+|.+|.+...|+..++..|+|..+..+...++...-..   ...++.+|.+|..
T Consensus       240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha  319 (1018)
T KOG2002|consen  240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA  319 (1018)
T ss_pred             HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence            766655443   5567777777777777777777777777666677776666666666555333   2346666777777


Q ss_pred             cCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       213 ~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      +|+   +++|..+|..+++.+|+..+..++||+..+..
T Consensus       320 ~Gd---~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~  354 (1018)
T KOG2002|consen  320 QGD---FEKAFKYYMESLKADNDNFVLPLVGLGQMYIK  354 (1018)
T ss_pred             hcc---HHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence            776   77777777776666665335555666555443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.70  E-value=6.5e-14  Score=116.05  Aligned_cols=204  Identities=12%  Similarity=0.028  Sum_probs=153.0

Q ss_pred             hccCChhHHHHHHHHHhcCcccccccCcch-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 024712           34 LKVRRPDKVLRHGLSILNDPKKRSALGPDV-WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG  112 (263)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~  112 (263)
                      ...++.+.+..........       +|+. .......+..+...|+++.|...++++.+..|+++.+...++.+|...|
T Consensus       129 ~~~g~~~~A~~~l~~A~~~-------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g  201 (398)
T PRK10747        129 QQRGDEARANQHLERAAEL-------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG  201 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            3344444444444444333       4443 3333345888889999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhc------------------------------------------CCCCHHHHHHHHHHHHHcCChhH
Q 024712          113 LWAEAEKAYSSLLED------------------------------------------NPLDPVLHKRRVAIAKAQGNFPT  150 (263)
Q Consensus       113 ~~~~A~~~~~~~~~~------------------------------------------~p~~~~~~~~l~~~~~~~g~~~~  150 (263)
                      +|++|+..+.++.+.                                          .|+++.+...++..+...|+.++
T Consensus       202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~  281 (398)
T PRK10747        202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT  281 (398)
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH
Confidence            999998666655532                                          23355566777888889999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712          151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (263)
Q Consensus       151 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al  230 (263)
                      |...++++++. |.++......+.+  ..++.++++..+++.++.+|+++..+..+|.++...|+   +++|..+|++++
T Consensus       282 A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~---~~~A~~~le~al  355 (398)
T PRK10747        282 AQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE---WQEASLAFRAAL  355 (398)
T ss_pred             HHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence            99999999984 4455544444443  44889999999999999999999999999999999999   999999999999


Q ss_pred             ccCCCcchhHHHhHHHHHhh
Q 024712          231 DLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       231 ~~~~~~~~~~~~~l~~~~~~  250 (263)
                      +..|+......++.+....+
T Consensus       356 ~~~P~~~~~~~La~~~~~~g  375 (398)
T PRK10747        356 KQRPDAYDYAWLADALDRLH  375 (398)
T ss_pred             hcCCCHHHHHHHHHHHHHcC
Confidence            99996322244555544333

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.69  E-value=6.2e-15  Score=113.79  Aligned_cols=153  Identities=16%  Similarity=0.125  Sum_probs=134.0

Q ss_pred             CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH---H
Q 024712           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---A  168 (263)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~  168 (263)
                      +..+..++.+|..+...|++++|+..+++++..+|+++   .++..+|.++...|++++|+..++++++.+|+++.   +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            45778899999999999999999999999999999876   57899999999999999999999999999998876   6


Q ss_pred             HHHHHHHHHhc--------ccHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHhcCCCCcHHHHH
Q 024712          169 WRELAEIYVSL--------QMYKQAAFCYEELILSQPTVPLYH-----------------LAYADVLYTLGGVDNILLAK  223 (263)
Q Consensus       169 ~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~~~~A~  223 (263)
                      ++.+|.++...        |++++|+..+++++..+|++...+                 ..+|.+++..|+   +.+|+
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~---~~~A~  186 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA---YVAAI  186 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---hHHHH
Confidence            89999999876        899999999999999999986432                 367889999999   99999


Q ss_pred             HHHHHhhccCCC--cchhHHHhHHHHHhh
Q 024712          224 KYYASTIDLTGG--KNTKALFGICLVMFV  250 (263)
Q Consensus       224 ~~~~~al~~~~~--~~~~~~~~l~~~~~~  250 (263)
                      ..|++++...|+  ....+++.++.+...
T Consensus       187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~  215 (235)
T TIGR03302       187 NRFETVVENYPDTPATEEALARLVEAYLK  215 (235)
T ss_pred             HHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence            999999999875  234666666666554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.68  E-value=1.1e-14  Score=112.34  Aligned_cols=194  Identities=17%  Similarity=0.175  Sum_probs=147.7

Q ss_pred             hhHHHHHHHHHhcCcc---------cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 024712           39 PDKVLRHGLSILNDPK---------KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLE  109 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~  109 (263)
                      .+.-++++..++....         .....+|++..+++..+..|+..|+-..|+.-+.+.++..|+...+....|.++.
T Consensus        38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll  117 (504)
T KOG0624|consen   38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL  117 (504)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence            3444555555543321         2344577778888888888888888888888888888888888888888888888


Q ss_pred             HcCcHHHHHHHHHHHHhcCCCCHH---HH------------HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 024712          110 AKGLWAEAEKAYSSLLEDNPLDPV---LH------------KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  174 (263)
Q Consensus       110 ~~~~~~~A~~~~~~~~~~~p~~~~---~~------------~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~  174 (263)
                      .+|+++.|...|+.++..+|++..   +.            ......++..|+...|+......+++.|=+...+...+.
T Consensus       118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak  197 (504)
T KOG0624|consen  118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK  197 (504)
T ss_pred             hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence            888888888888888887775421   11            222333445677888888888888888888888888888


Q ss_pred             HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ||...|+...||..++.+-++..++...++.++.+++..|+   .+.++...+.+++++|+
T Consensus       198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd---~~~sL~~iRECLKldpd  255 (504)
T KOG0624|consen  198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD---AENSLKEIRECLKLDPD  255 (504)
T ss_pred             HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh---HHHHHHHHHHHHccCcc
Confidence            88888888888888888888888888888888888888888   88888888888888886

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.68  E-value=1.5e-14  Score=107.78  Aligned_cols=168  Identities=17%  Similarity=0.124  Sum_probs=153.6

Q ss_pred             CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 024712           78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK  157 (263)
Q Consensus        78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  157 (263)
                      .+...+...+-.....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|...+..|++..|+..+++
T Consensus        47 ~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rk  125 (257)
T COG5010          47 RQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRK  125 (257)
T ss_pred             HhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            34444667777778889999999 99999999999999999999999999999999988899999999999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcc
Q 024712          158 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN  237 (263)
Q Consensus       158 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~  237 (263)
                      +....|++..+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..++..|+   ++.|..++.++....+. +
T Consensus       126 A~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~a-d  201 (257)
T COG5010         126 AARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAA-D  201 (257)
T ss_pred             HhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCC-c
Confidence            9999999999999999999999999999999999999999999999999999999999   99999999999877664 7


Q ss_pred             hhHHHhHHHHHhh
Q 024712          238 TKALFGICLVMFV  250 (263)
Q Consensus       238 ~~~~~~l~~~~~~  250 (263)
                      .+..-.++++...
T Consensus       202 ~~v~~NLAl~~~~  214 (257)
T COG5010         202 SRVRQNLALVVGL  214 (257)
T ss_pred             hHHHHHHHHHHhh
Confidence            7777788777666

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.67  E-value=8.4e-15  Score=116.95  Aligned_cols=182  Identities=16%  Similarity=-0.012  Sum_probs=163.9

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  142 (263)
                      ++.+..+.|.+.+..|++++|.+.|+.++..+.....++++.|..+...|+.++|+.+|-+...+--++..++..++.+|
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy  568 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY  568 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            45566667888888999999999999999988888999999999999999999999999999888888899999999999


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHH
Q 024712          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA  222 (263)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A  222 (263)
                      ..+.+..+|++++.++..+-|+++.++..||.+|-..|+-.+|..++-......|.+......||..|....-   .++|
T Consensus       569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf---~eka  645 (840)
T KOG2003|consen  569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF---SEKA  645 (840)
T ss_pred             HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH---HHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998888   9999


Q ss_pred             HHHHHHhhccCCCcchhHHHhHHHHH
Q 024712          223 KKYYASTIDLTGGKNTKALFGICLVM  248 (263)
Q Consensus       223 ~~~~~~al~~~~~~~~~~~~~l~~~~  248 (263)
                      +.+|+++--+.|+ .......++.|.
T Consensus       646 i~y~ekaaliqp~-~~kwqlmiasc~  670 (840)
T KOG2003|consen  646 INYFEKAALIQPN-QSKWQLMIASCF  670 (840)
T ss_pred             HHHHHHHHhcCcc-HHHHHHHHHHHH
Confidence            9999999989885 444444444443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=3e-14  Score=116.21  Aligned_cols=178  Identities=12%  Similarity=0.034  Sum_probs=137.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 024712           68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN  147 (263)
Q Consensus        68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  147 (263)
                      ..+| ++...|+..+-..+-.++++.+|+.+..|+..|..|...|++++|..+|.++..++|....+|..+|..+.-.|.
T Consensus       283 ~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~E  361 (611)
T KOG1173|consen  283 LHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGE  361 (611)
T ss_pred             HHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcch
Confidence            3455 788889998888888999999999999999999999999999999999999999999999999999988887777


Q ss_pred             hhHHHHHHHHH----------------------------------HHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 024712          148 FPTAIEWLNKY----------------------------------LETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI  193 (263)
Q Consensus       148 ~~~A~~~~~~~----------------------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  193 (263)
                      .++|+.+|..|                                  +.+.|.++-+...+|.+.+..+.|.+|..+|+.++
T Consensus       362 hdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l  441 (611)
T KOG1173|consen  362 HDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL  441 (611)
T ss_pred             HHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence            66666666554                                  44556666666666666666666666666666666


Q ss_pred             hhCC----CC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          194 LSQP----TV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       194 ~~~p----~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      ..-+    ..   ...+.+||.++.+++.   +++|+.+|++++.+.|. ++...-++++++..
T Consensus       442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~---~~eAI~~~q~aL~l~~k-~~~~~asig~iy~l  501 (611)
T KOG1173|consen  442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNK---YEEAIDYYQKALLLSPK-DASTHASIGYIYHL  501 (611)
T ss_pred             HHhhhccccccchhHHHHhHHHHHHHHhh---HHHHHHHHHHHHHcCCC-chhHHHHHHHHHHH
Confidence            2211    11   1247788888888888   88888888888888885 77766666666543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.66  E-value=7.3e-14  Score=114.49  Aligned_cols=169  Identities=15%  Similarity=0.020  Sum_probs=141.5

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----cHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG----LWAEAEKAYSSLLEDNPLDPVLHKR  137 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~~~~~~p~~~~~~~~  137 (263)
                      +........+..+...|++++|...++++++.+|++..++.. +..+...|    ....+...+......+|........
T Consensus        41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  119 (355)
T cd05804          41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM  119 (355)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence            445556667888899999999999999999999998877665 55555544    4444555444444566777788888


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhc
Q 024712          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYTL  213 (263)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~  213 (263)
                      +|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|.++    ..+..+|.++...
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~  199 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER  199 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999999999999999999999999999887543    2466899999999


Q ss_pred             CCCCcHHHHHHHHHHhhccCC
Q 024712          214 GGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       214 g~~~~~~~A~~~~~~al~~~~  234 (263)
                      |+   +++|+..|++++...|
T Consensus       200 G~---~~~A~~~~~~~~~~~~  217 (355)
T cd05804         200 GD---YEAALAIYDTHIAPSA  217 (355)
T ss_pred             CC---HHHHHHHHHHHhcccc
Confidence            99   9999999999987666

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.66  E-value=6e-14  Score=108.32  Aligned_cols=188  Identities=15%  Similarity=0.021  Sum_probs=168.4

Q ss_pred             cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (263)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  138 (263)
                      -+|....-...+|..++..|++..|+..|..+++.+|++..+++..|.+|..+|+-..|+..+.+++++.|+...+....
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR  112 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR  112 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence            35567777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLETFMADHD---------------AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  203 (263)
                      |.++.++|.+++|+..|+.++..+|++..               .+......++..|++..|+......+++.|-+...+
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~  192 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR  192 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence            99999999999999999999999996621               233455667788999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          204 LAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       204 ~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      ...+.||...|+   ...|+..++.+-++..+ +...+|-+....+.
T Consensus       193 ~~Rakc~i~~~e---~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~  235 (504)
T KOG0624|consen  193 QARAKCYIAEGE---PKKAIHDLKQASKLSQD-NTEGHYKISQLLYT  235 (504)
T ss_pred             HHHHHHHHhcCc---HHHHHHHHHHHHhcccc-chHHHHHHHHHHHh
Confidence            999999999999   99999999999999775 77777766555444

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=3.4e-14  Score=112.04  Aligned_cols=179  Identities=17%  Similarity=0.092  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  146 (263)
                      |.--+...+..+++..|+.+-++.++.+|.+..++.+.|..+...|+.++|+-.|+.+..+.|....+|..+..+|...|
T Consensus       303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~  382 (564)
T KOG1174|consen  303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK  382 (564)
T ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence            33345556778899999999999999999999999999999999999999999999999999999999888888888877


Q ss_pred             ChhHHH------------------------------------HHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 024712          147 NFPTAI------------------------------------EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYE  190 (263)
Q Consensus       147 ~~~~A~------------------------------------~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  190 (263)
                      ++.+|.                                    .++++++.+.|....+-..+|.++...|.++.++.+++
T Consensus       383 ~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe  462 (564)
T KOG1174|consen  383 RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE  462 (564)
T ss_pred             hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence            755554                                    45555555666666677778888888899999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          191 ELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       191 ~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      +.+...|+ ...+..||+++...+.   +++|..+|..++.++|. +.++..|+-..-+.
T Consensus       463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne---~Q~am~~y~~ALr~dP~-~~~sl~Gl~~lEK~  517 (564)
T KOG1174|consen  463 KHLIIFPD-VNLHNHLGDIMRAQNE---PQKAMEYYYKALRQDPK-SKRTLRGLRLLEKS  517 (564)
T ss_pred             HHHhhccc-cHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCcc-chHHHHHHHHHHhc
Confidence            99888775 4568889999999999   99999999999999996 88888888776544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.66  E-value=3.7e-15  Score=113.09  Aligned_cols=116  Identities=21%  Similarity=0.208  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (263)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  179 (263)
                      -+..-|.-+...++|.+|+..|.++|.++|.++..|.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|..+
T Consensus        83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~  162 (304)
T KOG0553|consen   83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL  162 (304)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence            34556778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       180 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      |++.+|+..|+++|.++|++..++.+|..+-..++.
T Consensus       163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            999999999999999999999888888888877777

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.66  E-value=2e-13  Score=113.10  Aligned_cols=168  Identities=13%  Similarity=0.044  Sum_probs=142.2

Q ss_pred             cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------------------------------CCC
Q 024712           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------------------------------------------FPE   96 (263)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------------------------------------~p~   96 (263)
                      ..|+++.++..++..+...|++++|+.++..+.+.                                          .|+
T Consensus       182 ~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~  261 (398)
T PRK10747        182 VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRH  261 (398)
T ss_pred             cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhC
Confidence            37888888888888888899999888666555532                                          234


Q ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (263)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  176 (263)
                      ++.+...++..+...|+.++|...++++++. |.++.....++.+  ..++.++++..+++.++.+|+++..+..+|.++
T Consensus       262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~  338 (398)
T PRK10747        262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLL  338 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            6667777888999999999999999999995 4455544444443  459999999999999999999999999999999


Q ss_pred             HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712          177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~  233 (263)
                      ...|++++|...|+++++..|++.. +..++.++...|+   .++|..+|++++.+.
T Consensus       339 ~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~---~~~A~~~~~~~l~~~  391 (398)
T PRK10747        339 MKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHK---PEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC---HHHHHHHHHHHHhhh
Confidence            9999999999999999999998654 5689999999999   999999999998764

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.65  E-value=9.4e-15  Score=121.51  Aligned_cols=174  Identities=16%  Similarity=0.148  Sum_probs=148.9

Q ss_pred             cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-
Q 024712           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ--------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-  127 (263)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-  127 (263)
                      ....|..+.+...++..|...|++++|...++.+++.        .|.-......+|.+|...+++.+|+..|++++.+ 
T Consensus       192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~  271 (508)
T KOG1840|consen  192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR  271 (508)
T ss_pred             ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            4457788888888999999999999999999999998        5555555667999999999999999999999985 


Q ss_pred             ----CCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712          128 ----NPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--------ADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (263)
Q Consensus       128 ----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a  192 (263)
                          .+++   ..++.+++.+|...|++++|..++++++++..        .-...+..++.++...+++++|..+++++
T Consensus       272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a  351 (508)
T KOG1840|consen  272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA  351 (508)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence                2334   46889999999999999999999999998742        22456788999999999999999999999


Q ss_pred             HhhC-----CCC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712          193 ILSQ-----PTV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       193 l~~~-----p~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~  233 (263)
                      +++.     +.+   +..+.++|.+|+..|+   +++|.++|++++++.
T Consensus       352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk---~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGK---YKEAEELYKKAIQIL  397 (508)
T ss_pred             HHHHHhhccccchHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHH
Confidence            8762     233   5578999999999999   999999999999875

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.65  E-value=6.7e-15  Score=102.73  Aligned_cols=105  Identities=14%  Similarity=0.112  Sum_probs=84.4

Q ss_pred             hcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH
Q 024712          126 EDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  204 (263)
Q Consensus       126 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  204 (263)
                      ... ++..+..+.+|..++..|++++|...|+-+...+|.+...|++||.++..+|+|.+|+.+|.+++.++|++|.++.
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            345 5666777778888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712          205 AYADVLYTLGGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       205 ~la~~~~~~g~~~~~~~A~~~~~~al~~~  233 (263)
                      ++|.|++..|+   .+.|++.|+.++...
T Consensus       108 ~ag~c~L~lG~---~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        108 AAAECYLACDN---VCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHcCC---HHHHHHHHHHHHHHh
Confidence            88888888888   888888888887775

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.64  E-value=1.1e-13  Score=113.33  Aligned_cols=172  Identities=16%  Similarity=-0.002  Sum_probs=147.0

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK  136 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  136 (263)
                      +|+.+..+..++..+...|+.+.+...+.++.+..|.+   .......+.++...|++++|...+++++..+|++..++.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            68999999999999999999999999999988888743   456778899999999999999999999999999987766


Q ss_pred             HHHHHHHHcCC----hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712          137 RRVAIAKAQGN----FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (263)
Q Consensus       137 ~l~~~~~~~g~----~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (263)
                      . +..+...|+    ...+...+......+|.....+..+|.++...|++++|+..++++++..|+++.++..+|.+++.
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~  160 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            4 555555444    44444444443356777778888899999999999999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHhhccCCC
Q 024712          213 LGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       213 ~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .|+   +++|+.++.+++...|.
T Consensus       161 ~g~---~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         161 QGR---FKEGIAFMESWRDTWDC  180 (355)
T ss_pred             cCC---HHHHHHHHHhhhhccCC
Confidence            999   99999999999998764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.64  E-value=3.4e-13  Score=115.42  Aligned_cols=201  Identities=16%  Similarity=0.148  Sum_probs=139.7

Q ss_pred             ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHH
Q 024712           38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA  117 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A  117 (263)
                      +.+++..+...++..       +|..+.+|..+|.++-+.|+.+++...+-.+-.++|.+...|..++......|.++.|
T Consensus       154 ~~eeA~~i~~EvIkq-------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA  226 (895)
T KOG2076|consen  154 DLEEAEEILMEVIKQ-------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA  226 (895)
T ss_pred             CHHHHHHHHHHHHHh-------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence            344555555555444       6666666777777777777777777776666666776667777777777777777777


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---------------------------------
Q 024712          118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA---------------------------------  164 (263)
Q Consensus       118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~---------------------------------  164 (263)
                      .-+|.++++.+|.+.......+.+|.+.|+...|...|.+++...|.                                 
T Consensus       227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~  306 (895)
T KOG2076|consen  227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA  306 (895)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            77777777777776666666666666666666666666554444321                                 


Q ss_pred             --------------------------------------------------------------------------------
Q 024712          165 --------------------------------------------------------------------------------  164 (263)
Q Consensus       165 --------------------------------------------------------------------------------  164 (263)
                                                                                                      
T Consensus       307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic  386 (895)
T KOG2076|consen  307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC  386 (895)
T ss_pred             HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence                                                                                            


Q ss_pred             --------------------------CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCCC
Q 024712          165 --------------------------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGVD  217 (263)
Q Consensus       165 --------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~  217 (263)
                                                +++.+..++..+...|++.+|+.++..+....+.. ..+|..+|.||..+|.  
T Consensus       387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e--  464 (895)
T KOG2076|consen  387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE--  464 (895)
T ss_pred             hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh--
Confidence                                      13345567888888899999999998888776643 5689999999999999  


Q ss_pred             cHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          218 NILLAKKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                       ++.|+.+|.+++...|+ +..+...|.-...
T Consensus       465 -~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~  494 (895)
T KOG2076|consen  465 -YEEAIEFYEKVLILAPD-NLDARITLASLYQ  494 (895)
T ss_pred             -HHHHHHHHHHHHhcCCC-chhhhhhHHHHHH
Confidence             99999999999999997 5444444444433

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.63  E-value=3.1e-13  Score=112.22  Aligned_cols=198  Identities=12%  Similarity=0.035  Sum_probs=167.4

Q ss_pred             CChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHH
Q 024712           37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE  116 (263)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~  116 (263)
                      +.-+....+....+..       -|.....|...+......|+...|+.++..+++.+|++..+|+....+.+...+++.
T Consensus       564 gt~Esl~Allqkav~~-------~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~er  636 (913)
T KOG0495|consen  564 GTRESLEALLQKAVEQ-------CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELER  636 (913)
T ss_pred             CcHHHHHHHHHHHHHh-------CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHH
Confidence            3334444444444443       555566677778888888999999999999999999999999998899999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712          117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (263)
Q Consensus       117 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  196 (263)
                      |..+|.++....|+ ..+|..-+.+...+++.++|+..++++++.+|.....|..+|.++...++.+.|...|...++..
T Consensus       637 aR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c  715 (913)
T KOG0495|consen  637 ARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC  715 (913)
T ss_pred             HHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence            99999999987665 56777888888889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHH
Q 024712          197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICL  246 (263)
Q Consensus       197 p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~  246 (263)
                      |+.+..|..++.+-...|+   .-.|...+.++.-.||+ +...|...+.
T Consensus       716 P~~ipLWllLakleEk~~~---~~rAR~ildrarlkNPk-~~~lwle~Ir  761 (913)
T KOG0495|consen  716 PNSIPLWLLLAKLEEKDGQ---LVRARSILDRARLKNPK-NALLWLESIR  761 (913)
T ss_pred             CCCchHHHHHHHHHHHhcc---hhhHHHHHHHHHhcCCC-cchhHHHHHH
Confidence            9999999999999999998   99999999999999996 6666654443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.63  E-value=8.1e-14  Score=122.36  Aligned_cols=187  Identities=11%  Similarity=-0.012  Sum_probs=160.3

Q ss_pred             cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH----
Q 024712           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----  132 (263)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----  132 (263)
                      ...+|....++.+++..+...+++++|+.+++..++.+|+...+++.+|.++.+.+++.++..+  .++..-+.+.    
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            3457889999999999999999999999999999999999999999999999999888777665  6655555444    


Q ss_pred             ---------------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--
Q 024712          133 ---------------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--  195 (263)
Q Consensus       133 ---------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--  195 (263)
                                     .+++.+|.||-++|+.++|...|+++++.+|.++.+..++|..|... +.++|+.++.+|+..  
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence                           79999999999999999999999999999999999999999999888 999999988888754  


Q ss_pred             ------------------CCCCHHH--------HHHHH------------HHHHhcCCCCcHHHHHHHHHHhhccCCCcc
Q 024712          196 ------------------QPTVPLY--------HLAYA------------DVLYTLGGVDNILLAKKYYASTIDLTGGKN  237 (263)
Q Consensus       196 ------------------~p~~~~~--------~~~la------------~~~~~~g~~~~~~~A~~~~~~al~~~~~~~  237 (263)
                                        +|.+...        ...++            .+|...++   +++++..++.+++.+|. +
T Consensus       181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~---~~~~i~iLK~iL~~~~~-n  256 (906)
T PRK14720        181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED---WDEVIYILKKILEHDNK-N  256 (906)
T ss_pred             hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhcCCc-c
Confidence                              3443322        11223            66667777   99999999999999996 9


Q ss_pred             hhHHHhHHHHHhh
Q 024712          238 TKALFGICLVMFV  250 (263)
Q Consensus       238 ~~~~~~l~~~~~~  250 (263)
                      .++..+++.|+..
T Consensus       257 ~~a~~~l~~~y~~  269 (906)
T PRK14720        257 NKAREELIRFYKE  269 (906)
T ss_pred             hhhHHHHHHHHHH
Confidence            9999999999886

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.62  E-value=3.8e-13  Score=119.11  Aligned_cols=195  Identities=14%  Similarity=0.010  Sum_probs=162.1

Q ss_pred             HHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q 024712           25 WEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLE  104 (263)
Q Consensus        25 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  104 (263)
                      ..+...+.....++...++......+..       +|........++.++...|+.++|+.++++++...|........+
T Consensus        36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~-------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal  108 (822)
T PRK14574         36 TQYDSLIIRARAGDTAPVLDYLQEESKA-------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA  108 (822)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhh-------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence            4566666677777777888888777766       666532222777788888999999999999994444555566666


Q ss_pred             HHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHH
Q 024712          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ  184 (263)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~  184 (263)
                      |.++...|++++|++.|+++++.+|+++.++..++..+...++.++|+..+++++..+|..... ..++.++...++..+
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~  187 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD  187 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH
Confidence            8899999999999999999999999999999999999999999999999999999999986554 556666666777777


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712          185 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (263)
Q Consensus       185 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al  230 (263)
                      |+..++++++.+|++..++..+..++...|-   ...|.+...+--
T Consensus       188 AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~---~~~a~~l~~~~p  230 (822)
T PRK14574        188 ALQASSEAVRLAPTSEEVLKNHLEILQRNRI---VEPALRLAKENP  230 (822)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---cHHHHHHHHhCc
Confidence            9999999999999999999999999999999   888887776543

>TIGR00540 hemY_coli hemY protein

Probab=99.61  E-value=1.7e-12  Score=108.13  Aligned_cols=166  Identities=13%  Similarity=0.076  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHH---------------------
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLL---------------------  125 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~---------------------  125 (263)
                      ....+.+++..|+++.|...++.+.+..|+++.++..++.++...|++++|.+.+.+..                     
T Consensus       156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~  235 (409)
T TIGR00540       156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL  235 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            33346666666666666666666666666666666666666666666665555555444                     


Q ss_pred             -----------------hcCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHH--HHHHHHHHhcccH
Q 024712          126 -----------------EDNP----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW--RELAEIYVSLQMY  182 (263)
Q Consensus       126 -----------------~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~--~~la~~~~~~g~~  182 (263)
                                       ...|    +++..+..++..+...|++++|...++++++..|++....  ..........++.
T Consensus       236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~  315 (409)
T TIGR00540       236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN  315 (409)
T ss_pred             HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh
Confidence                             2234    3566677778888889999999999999999999887532  2223333445788


Q ss_pred             HHHHHHHHHHHhhCCCCH--HHHHHHHHHHHhcCCCCcHHHHHHHHH--HhhccCCC
Q 024712          183 KQAAFCYEELILSQPTVP--LYHLAYADVLYTLGGVDNILLAKKYYA--STIDLTGG  235 (263)
Q Consensus       183 ~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~~~~A~~~~~--~al~~~~~  235 (263)
                      +.+++.++++++..|+++  .....+|.+++..|+   +++|.++|+  .+++..|+
T Consensus       316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~---~~~A~~~le~a~a~~~~p~  369 (409)
T TIGR00540       316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE---FIEAADAFKNVAACKEQLD  369 (409)
T ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc---HHHHHHHHHHhHHhhcCCC
Confidence            889999999999999999  888899999999999   999999999  57778786

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.61  E-value=9.6e-13  Score=106.08  Aligned_cols=136  Identities=18%  Similarity=0.058  Sum_probs=103.2

Q ss_pred             CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 024712           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  174 (263)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~  174 (263)
                      |.-..+++..+..++..|++++|...++..+...|+|+..+...+.++...++.++|.+.+++++..+|+.+..+.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            56666777777777777888888888887777778877777777788888888888888888888888877777777888


Q ss_pred             HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712          175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~  233 (263)
                      .++..|++.+|+..++..+..+|+++..|..||++|-.+|+   ..+|...+.+...++
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~---~~~a~~A~AE~~~~~  438 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN---RAEALLARAEGYALA  438 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc---hHHHHHHHHHHHHhC
Confidence            88888888888888888777778877777777777777777   555555555555444

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1.4e-13  Score=111.71  Aligned_cols=168  Identities=17%  Similarity=0.090  Sum_probs=122.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP  149 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  149 (263)
                      +|..+...++++.|+.+|++++..+-.        ..+.-+....++++.........+|.-..--...|..++..|+|.
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~  375 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP  375 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH
Confidence            444555566777777777776554322        334444455555555555555556665555566688888888888


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712          150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (263)
Q Consensus       150 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a  229 (263)
                      .|+..|.+++..+|+++..+.+.|.||..+|.+..|+...+.+++++|++...|.+-|.++..+.+   |++|.+.|.++
T Consensus       376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~---ydkAleay~ea  452 (539)
T KOG0548|consen  376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE---YDKALEAYQEA  452 (539)
T ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888888   88888888888


Q ss_pred             hccCCCcchhHHHhHHHHHh
Q 024712          230 IDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       230 l~~~~~~~~~~~~~l~~~~~  249 (263)
                      ++.+|. +..+.-++..|..
T Consensus       453 le~dp~-~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  453 LELDPS-NAEAIDGYRRCVE  471 (539)
T ss_pred             HhcCch-hHHHHHHHHHHHH
Confidence            888885 6666666666654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.60  E-value=6.5e-13  Score=113.72  Aligned_cols=166  Identities=17%  Similarity=0.092  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  143 (263)
                      .......|...+-.|++++|.+++..++.+.|.++.++..+|.+|.+.|+.+++...+-.+-.++|.+.+.|..++....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            34455567777778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHhcCCCCc
Q 024712          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-----PLYHLAYADVLYTLGGVDN  218 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~  218 (263)
                      .+|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|..     .......+..+...++   
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---  295 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---  295 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---
Confidence            99999999999999999999999999999999999999999999999999999932     1233445777888888   


Q ss_pred             HHHHHHHHHHhhcc
Q 024712          219 ILLAKKYYASTIDL  232 (263)
Q Consensus       219 ~~~A~~~~~~al~~  232 (263)
                      -+.|.+.++.++..
T Consensus       296 ~e~a~~~le~~~s~  309 (895)
T KOG2076|consen  296 RERAAKALEGALSK  309 (895)
T ss_pred             HHHHHHHHHHHHhh
Confidence            89999999998873

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.60  E-value=3.1e-13  Score=112.26  Aligned_cols=179  Identities=15%  Similarity=0.123  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  143 (263)
                      ..+|..-+.....+++.++|+++++.+++.+|+.+..|.++|.++.++++.+.|...|...+..-|..+..|..++.+-.
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE  730 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE  730 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence            44555566666778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------------------------
Q 024712          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------------------------  199 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------------  199 (263)
                      ..|....|...++++.-.+|.+...|.....+-+..|..+.|...+.++++-.|++                        
T Consensus       731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL  810 (913)
T KOG0495|consen  731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL  810 (913)
T ss_pred             HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999998876654                        


Q ss_pred             ------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC-cchhHHHhHH
Q 024712          200 ------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGIC  245 (263)
Q Consensus       200 ------~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~-~~~~~~~~l~  245 (263)
                            +.+...+|..++...+   +++|.++|.+++..+|+ .+.++|+.-.
T Consensus       811 kkce~dphVllaia~lfw~e~k---~~kar~Wf~Ravk~d~d~GD~wa~fykf  860 (913)
T KOG0495|consen  811 KKCEHDPHVLLAIAKLFWSEKK---IEKAREWFERAVKKDPDNGDAWAWFYKF  860 (913)
T ss_pred             HhccCCchhHHHHHHHHHHHHH---HHHHHHHHHHHHccCCccchHHHHHHHH
Confidence                  3466778888888888   99999999999999998 6677766433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.59  E-value=9.3e-14  Score=97.03  Aligned_cols=108  Identities=14%  Similarity=-0.020  Sum_probs=87.8

Q ss_pred             HHHhC-CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH
Q 024712           90 LQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA  168 (263)
Q Consensus        90 ~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  168 (263)
                      +.... ++.-+..+.+|..+...|++++|...|+-+...+|.+...|+++|.++..+|++.+|+..|.+++.++|+++..
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            33444 55666777788888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712          169 WRELAEIYVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       169 ~~~la~~~~~~g~~~~A~~~~~~al~~~p  197 (263)
                      ++++|.|++..|+.+.|.+.|+.++....
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            88888888888888888888888887663

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.59  E-value=3.8e-14  Score=107.63  Aligned_cols=120  Identities=18%  Similarity=0.000  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  143 (263)
                      ..-+..-|.-++..++|.+|+..|.++++..|.++..+.+++-+|.+.|.++.|++.++.++.++|....+|.++|.+|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            44455678888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHH
Q 024712          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK  183 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~  183 (263)
                      .+|++.+|+..|+++|+++|++...+..|..+-...++..
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999988888877776655

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1.2e-13  Score=108.97  Aligned_cols=172  Identities=16%  Similarity=0.061  Sum_probs=157.6

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH--------
Q 024712           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP--------  132 (263)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--------  132 (263)
                      |.....-...+.++.-.|++++|...--..+..++.+..+++..|.++...++.+.|+..|++++.++|++.        
T Consensus       166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~  245 (486)
T KOG0550|consen  166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM  245 (486)
T ss_pred             chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence            555566666788888899999999999999999999999999999999999999999999999999999874        


Q ss_pred             ----HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH
Q 024712          133 ----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  204 (263)
Q Consensus       133 ----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  204 (263)
                          ..+..-|.-.++.|++.+|.+.|..+|.++|++.    ..+.+.+.+...+|+.++|+...+.+++++|....++.
T Consensus       246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall  325 (486)
T KOG0550|consen  246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL  325 (486)
T ss_pred             HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence                3566778899999999999999999999999884    56788999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          205 AYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       205 ~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ..|.|+..+++   +++|++.|+++++...+
T Consensus       326 ~ra~c~l~le~---~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  326 RRANCHLALEK---WEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHhhccc
Confidence            99999999999   99999999999988654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.59  E-value=4.9e-13  Score=110.79  Aligned_cols=203  Identities=18%  Similarity=0.140  Sum_probs=176.0

Q ss_pred             cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (263)
                      .+....-+.....++.+       .|+..+.+...|..+...|+-++|......++..++.+..+|..+|.++....+|+
T Consensus        20 ~kQYkkgLK~~~~iL~k-------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~   92 (700)
T KOG1156|consen   20 TKQYKKGLKLIKQILKK-------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYD   92 (700)
T ss_pred             HHHHHhHHHHHHHHHHh-------CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHH
Confidence            33455666777777776       77888888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712          116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       116 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  195 (263)
                      +|+.+|+.++...|+|..++..++.+..+.++++.....-.+.++..|..-..|+..+..+...|++..|....+...+.
T Consensus        93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t  172 (700)
T KOG1156|consen   93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT  172 (700)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888776654


Q ss_pred             C---CCCH---------------------------------------HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712          196 Q---PTVP---------------------------------------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       196 ~---p~~~---------------------------------------~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~  233 (263)
                      .   |...                                       ......|.+++.+++   +++|...|...+..+
T Consensus       173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~---lEeA~~~y~~Ll~rn  249 (700)
T KOG1156|consen  173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ---LEEAVKVYRRLLERN  249 (700)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh---HHhHHHHHHHHHhhC
Confidence            3   2211                                       123345677788888   999999999999999


Q ss_pred             CCcchhHHHhHHHHHh
Q 024712          234 GGKNTKALFGICLVMF  249 (263)
Q Consensus       234 ~~~~~~~~~~l~~~~~  249 (263)
                      |+ +...+.++..|.+
T Consensus       250 Pd-n~~Yy~~l~~~lg  264 (700)
T KOG1156|consen  250 PD-NLDYYEGLEKALG  264 (700)
T ss_pred             ch-hHHHHHHHHHHHH
Confidence            96 7777777777764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.58  E-value=3.8e-13  Score=108.39  Aligned_cols=154  Identities=20%  Similarity=0.152  Sum_probs=142.6

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (263)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  140 (263)
                      |......+..+...+..|++++|+..++.++...|+|+..+...+.++...++..+|.+.+++++..+|+.+....++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            45566777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  220 (263)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~  220 (263)
                      .++..|++.+|+..++..+..+|+++..|..||..|..+|+..+|..                 ..++.++..|+   ++
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~---~~  442 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGR---LE  442 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCC---HH
Confidence            99999999999999999999999999999999999999999887754                 45677888899   99


Q ss_pred             HHHHHHHHhhccCC
Q 024712          221 LAKKYYASTIDLTG  234 (263)
Q Consensus       221 ~A~~~~~~al~~~~  234 (263)
                      +|+..+.++.+...
T Consensus       443 ~A~~~l~~A~~~~~  456 (484)
T COG4783         443 QAIIFLMRASQQVK  456 (484)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887763

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.57  E-value=1.7e-13  Score=111.43  Aligned_cols=112  Identities=17%  Similarity=0.105  Sum_probs=79.2

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM  181 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  181 (263)
                      ...|..++..|+|++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.+++..|+
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence            34566666677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 024712          182 YKQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (263)
Q Consensus       182 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (263)
                      +++|+..|++++.++|+++.+...++.|...+
T Consensus        86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            77777777777777777777666666665444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=8.8e-13  Score=97.82  Aligned_cols=152  Identities=16%  Similarity=0.078  Sum_probs=136.1

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (263)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  140 (263)
                      |....+....|+.+-..|.+++|+++|+..++.+|.+..++...-.+...+|+.-+|++.+.+.++..+.+.++|..++.
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae  162 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE  162 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            56666666778888888999999999999999999998888887888888899999999999999999999999999999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (263)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (263)
                      +|...|+|++|.-++++++-+.|.++-.+..+|.+++-+|   ++.-|.++|.++++++|.+...++.+..+-..
T Consensus       163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~  237 (289)
T KOG3060|consen  163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA  237 (289)
T ss_pred             HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998876   56789999999999999888777766544443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.55  E-value=6.5e-12  Score=96.63  Aligned_cols=164  Identities=13%  Similarity=0.006  Sum_probs=138.0

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVG---RLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLH  135 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~  135 (263)
                      ..+..+...|..++..|++++|+..|+.++..+|.++.+.   +.+|.+++..+++++|+..+++.++.+|+++   .++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            3556677789999999999999999999999999876554   8899999999999999999999999998875   578


Q ss_pred             HHHHHHHHHcC---------------C---hhHHHHHHHHHHHhcCCCHHH-----------------HHHHHHHHHhcc
Q 024712          136 KRRVAIAKAQG---------------N---FPTAIEWLNKYLETFMADHDA-----------------WRELAEIYVSLQ  180 (263)
Q Consensus       136 ~~l~~~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~~-----------------~~~la~~~~~~g  180 (263)
                      +.+|.++...+               +   ..+|+..|+..++..|++.-+                 -+.+|..|.+.|
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~  189 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG  189 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88887764443               1   346889999999999998421                 235788899999


Q ss_pred             cHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712          181 MYKQAAFCYEELILSQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (263)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~  228 (263)
                      .|..|+.-++.+++..|+.   ..++..++.+|..+|.   .++|.+....
T Consensus       190 ~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~---~~~a~~~~~~  237 (243)
T PRK10866        190 AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL---NAQADKVAKI  237 (243)
T ss_pred             chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC---hHHHHHHHHH
Confidence            9999999999999998876   5578899999999999   8888776543

>TIGR00540 hemY_coli hemY protein

Probab=99.55  E-value=8e-12  Score=104.10  Aligned_cols=173  Identities=11%  Similarity=-0.057  Sum_probs=126.4

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  138 (263)
                      .|+....+...|.++...|+++.|..++.++.+..|++. .+....+.++...|+++.|...++++.+..|+++.++..+
T Consensus       114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll  193 (409)
T TIGR00540       114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLA  193 (409)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            455555666778899999999999999999999999875 5666789999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcC------------------------------------------CCHHHHHHHHHHH
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLETFM------------------------------------------ADHDAWRELAEIY  176 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p------------------------------------------~~~~~~~~la~~~  176 (263)
                      +.++...|++++|...+.+..+..+                                          +++.++..+|..+
T Consensus       194 ~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l  273 (409)
T TIGR00540       194 EEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHL  273 (409)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHH
Confidence            9999999999988888877665422                                          2444555555666


Q ss_pred             HhcccHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          177 VSLQMYKQAAFCYEELILSQPTVPLYH--LAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ...|++++|...++++++..|++....  ..........++   .+++.+.++++++..|+
T Consensus       274 ~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~---~~~~~~~~e~~lk~~p~  331 (409)
T TIGR00540       274 IDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED---NEKLEKLIEKQAKNVDD  331 (409)
T ss_pred             HHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC---hHHHHHHHHHHHHhCCC
Confidence            666666666666666666666554321  111112222344   55666666666666664

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.55  E-value=3.1e-12  Score=96.16  Aligned_cols=159  Identities=20%  Similarity=0.174  Sum_probs=127.1

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLH  135 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~  135 (263)
                      .....+...|...+..|++.+|+..|+.+...+|.+   +.+.+.+|.+++..|++++|+..+++.+...|+++   .++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            345677889999999999999999999999999864   56788999999999999999999999999999875   577


Q ss_pred             HHHHHHHHHcC-----------ChhHHHHHHHHHHHhcCCCHHH-----------------HHHHHHHHHhcccHHHHHH
Q 024712          136 KRRVAIAKAQG-----------NFPTAIEWLNKYLETFMADHDA-----------------WRELAEIYVSLQMYKQAAF  187 (263)
Q Consensus       136 ~~l~~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~  187 (263)
                      +.+|.+++...           ...+|+..|+..+...|++..+                 -+.+|..|+..|.|..|+.
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~  162 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII  162 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            88888876543           3458999999999999998322                 2357899999999999999


Q ss_pred             HHHHHHhhCCCCH---HHHHHHHHHHHhcCCCCcHHHHH
Q 024712          188 CYEELILSQPTVP---LYHLAYADVLYTLGGVDNILLAK  223 (263)
Q Consensus       188 ~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~~~~A~  223 (263)
                      .++.+++..|+.+   .++..++.++..+|.   .+.|.
T Consensus       163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~---~~~a~  198 (203)
T PF13525_consen  163 RFQYVIENYPDTPAAEEALARLAEAYYKLGL---KQAAD  198 (203)
T ss_dssp             HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT----HHHHH
T ss_pred             HHHHHHHHCCCCchHHHHHHHHHHHHHHhCC---hHHHH
Confidence            9999999999885   478889999999998   66443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.55  E-value=3.8e-13  Score=116.17  Aligned_cols=192  Identities=15%  Similarity=0.057  Sum_probs=174.2

Q ss_pred             cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH--HH
Q 024712           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP--VL  134 (263)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~  134 (263)
                      ..+++....++..+|..|.+..+...|.++|.++.+.+|.+..+....+..|....+++.|....-+.-+..|-..  ..
T Consensus       485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n  564 (1238)
T KOG1127|consen  485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN  564 (1238)
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence            4558888889999999999999999999999999999999999999999999999999999999777777666543  46


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (263)
                      |..+|..|...++..+|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+....+..+.+....|
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G  644 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG  644 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence            77799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhhch
Q 024712          215 GVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCH  252 (263)
Q Consensus       215 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~~~  252 (263)
                      .   |.+|...+...+..... +..+..|++.|..-|.
T Consensus       645 k---Ykeald~l~~ii~~~s~-e~~~q~gLaE~~ir~a  678 (1238)
T KOG1127|consen  645 K---YKEALDALGLIIYAFSL-ERTGQNGLAESVIRDA  678 (1238)
T ss_pred             h---HHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHH
Confidence            9   99999999999987664 7788888888766543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=4.8e-12  Score=100.11  Aligned_cols=185  Identities=14%  Similarity=0.048  Sum_probs=159.8

Q ss_pred             hHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCL--DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  140 (263)
                      .|......+.+.+-.++.  ..+..++-......|++......+|.+++..|++++|+..|+++...+|.+....-.+|.
T Consensus       195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~  274 (564)
T KOG1174|consen  195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAV  274 (564)
T ss_pred             cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHH
Confidence            444333344444444544  444555566666789999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  220 (263)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~  220 (263)
                      ++...|+++.-.......+........-|+.-+...+..+++..|+.+-++++..+|++..++...|.++...|+   .+
T Consensus       275 LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R---~~  351 (564)
T KOG1174|consen  275 LLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER---HT  351 (564)
T ss_pred             HHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc---hH
Confidence            999999999998888889888878888899999999999999999999999999999999999999999999999   99


Q ss_pred             HHHHHHHHhhccCCCcchhHHHhHHHHHhhc
Q 024712          221 LAKKYYASTIDLTGGKNTKALFGICLVMFVC  251 (263)
Q Consensus       221 ~A~~~~~~al~~~~~~~~~~~~~l~~~~~~~  251 (263)
                      +|+-.|+.+..+.|. ..+.+-||+.|+...
T Consensus       352 ~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~  381 (564)
T KOG1174|consen  352 QAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQ  381 (564)
T ss_pred             HHHHHHHHHHhcchh-hHHHHHHHHHHHHhh
Confidence            999999999999995 889999999998873

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.53  E-value=5.4e-13  Score=112.52  Aligned_cols=136  Identities=26%  Similarity=0.286  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 024712           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ  145 (263)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  145 (263)
                      +|...+..+...+..++|..++.++...+|..+..++..|.++...|++.+|.+.|..++.++|+++.+...+|.++...
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~  731 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL  731 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence            34456666677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CChhHHHH--HHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712          146 GNFPTAIE--WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       146 g~~~~A~~--~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                      |+..-|..  .+..+++++|.++++|+.+|.++..+|+.++|.++|+.++++.+.+|.
T Consensus       732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            77666666  777777777777777777777777777777777777777777766653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.53  E-value=2.5e-12  Score=107.23  Aligned_cols=174  Identities=16%  Similarity=0.143  Sum_probs=145.8

Q ss_pred             cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 024712           55 KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP--------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLE  126 (263)
Q Consensus        55 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  126 (263)
                      ......|....++.+++..|...|++++|..++++++++..        .-+..+..++.++..++++++|+.+++++++
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            34556777888999999999999999999999999988642        2345567788899999999999999999988


Q ss_pred             cC-----CCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 024712          127 DN-----PLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETF--------MADHDAWRELAEIYVSLQMYKQAAFCYE  190 (263)
Q Consensus       127 ~~-----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~  190 (263)
                      +.     +.+   ...+.++|.+|...|++.+|...+++++.+.        +.....+..+|..|...+.+.+|...|.
T Consensus       354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~  433 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE  433 (508)
T ss_pred             HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence            52     233   4578999999999999999999999999864        2334567889999999999999999999


Q ss_pred             HHHhh-------CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712          191 ELILS-------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  231 (263)
Q Consensus       191 ~al~~-------~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~  231 (263)
                      +++.+       .|+....+.+||.+|..+|+   ++.|+++-.+++.
T Consensus       434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~---~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN---YEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHHHccc---HHHHHHHHHHHHH
Confidence            88865       23445679999999999999   9999999999884

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.52  E-value=7.6e-13  Score=107.71  Aligned_cols=113  Identities=15%  Similarity=-0.002  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  146 (263)
                      +...|..++..|++++|+..|.+++...|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.+++..|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            44568888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712          147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (263)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  179 (263)
                      ++++|+..|+++++++|+++.+...++.+....
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999988888776555

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.52  E-value=8.4e-12  Score=105.48  Aligned_cols=192  Identities=17%  Similarity=0.067  Sum_probs=160.0

Q ss_pred             cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH
Q 024712           55 KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV  133 (263)
Q Consensus        55 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~  133 (263)
                      ...+++|.++.+.+.++..+...++.+.|....+++++.++ +++.+|..++.++...+++.+|+.+.+.++...|+|..
T Consensus       469 ~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~  548 (799)
T KOG4162|consen  469 EAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV  548 (799)
T ss_pred             HHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence            35666888889999999999999999999999999999955 78889999999999999999999888888776555211


Q ss_pred             --------------------------------------------------------------------------------
Q 024712          134 --------------------------------------------------------------------------------  133 (263)
Q Consensus       134 --------------------------------------------------------------------------------  133 (263)
                                                                                                      
T Consensus       549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~  628 (799)
T KOG4162|consen  549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG  628 (799)
T ss_pred             hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence                                                                                            


Q ss_pred             -----------------------HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 024712          134 -----------------------LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYE  190 (263)
Q Consensus       134 -----------------------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  190 (263)
                                             .|...+..+...++.++|..++.++-.++|..+..|+..|.++...|+..+|...|.
T Consensus       629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~  708 (799)
T KOG4162|consen  629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFL  708 (799)
T ss_pred             cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence                                   222344555556667777778888888888888889999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHH--HHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          191 ELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK--YYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       191 ~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~--~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      .++.++|+++.+...+|.++...|+   ..-|..  .+..+++++|. +..+|++++.+..+
T Consensus       709 ~Al~ldP~hv~s~~Ala~~lle~G~---~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~  766 (799)
T KOG4162|consen  709 VALALDPDHVPSMTALAELLLELGS---PRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKK  766 (799)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHhCC---cchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence            9999999999999999999999998   666666  89999999996 88889888887766

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.50  E-value=3e-12  Score=106.21  Aligned_cols=165  Identities=15%  Similarity=0.153  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 024712           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ  145 (263)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  145 (263)
                      .++..+.-.+..++|...++..+.++..+|.+++...+.|..+..+|+-++|....+.++..++.+..+|..+|.++...
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence            44556667789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 024712          146 GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKY  225 (263)
Q Consensus       146 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~  225 (263)
                      .+|++|+.+|..|+.+.|++..+|..++.+..+.++++.....-.+.++..|.....|..++..+...|+   +..|...
T Consensus        89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~---y~~A~~i  165 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE---YKMALEI  165 (700)
T ss_pred             hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999   9999888


Q ss_pred             HHHhhccC
Q 024712          226 YASTIDLT  233 (263)
Q Consensus       226 ~~~al~~~  233 (263)
                      .+...+..
T Consensus       166 l~ef~~t~  173 (700)
T KOG1156|consen  166 LEEFEKTQ  173 (700)
T ss_pred             HHHHHHhh
Confidence            77766554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=3e-12  Score=104.21  Aligned_cols=149  Identities=19%  Similarity=0.149  Sum_probs=129.3

Q ss_pred             cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 024712           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN  156 (263)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  156 (263)
                      ....+++++......-.+|.-..-....|..++..|+|..|+..|.+++..+|++...+.+.+.+|..+|.+..|+...+
T Consensus       337 lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~  416 (539)
T KOG0548|consen  337 LKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAK  416 (539)
T ss_pred             HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34555666666666667777777777889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712          157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (263)
Q Consensus       157 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~  228 (263)
                      ++++++|+....|+.-|.++..+.+|++|.+.|+++++.+|++..+...+..|......   .....+.+++
T Consensus       417 ~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~---~~~~ee~~~r  485 (539)
T KOG0548|consen  417 KCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRG---DETPEETKRR  485 (539)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhc---CCCHHHHHHh
Confidence            99999999999999999999999999999999999999999999998888888886433   2333444444

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.46  E-value=1.8e-12  Score=108.83  Aligned_cols=170  Identities=15%  Similarity=0.075  Sum_probs=102.8

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH--
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR--  137 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~--  137 (263)
                      -|..|..-..++..++..|-..+|+.++++.-        .|-....+|...|+..+|..+..+-++ .|.++..|..  
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG  464 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG  464 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence            44566666666666666666666666665433        233344455555555555555554444 2222222222  


Q ss_pred             --------------------------HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 024712          138 --------------------------RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE  191 (263)
Q Consensus       138 --------------------------l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  191 (263)
                                                +|......+++.++..+++..++++|-....|+.+|.+..+.++++.|..+|..
T Consensus       465 Dv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r  544 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR  544 (777)
T ss_pred             hhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence                                      222233346677777777777777777777777777777777777777777777


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712          192 LILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF  242 (263)
Q Consensus       192 al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~  242 (263)
                      ++.++|++..+|.+++.+|...|+   ..+|...+.++++-+-+ ++..|-
T Consensus       545 cvtL~Pd~~eaWnNls~ayi~~~~---k~ra~~~l~EAlKcn~~-~w~iWE  591 (777)
T KOG1128|consen  545 CVTLEPDNAEAWNNLSTAYIRLKK---KKRAFRKLKEALKCNYQ-HWQIWE  591 (777)
T ss_pred             HhhcCCCchhhhhhhhHHHHHHhh---hHHHHHHHHHHhhcCCC-CCeeee
Confidence            777777777777777777777777   77777777777766643 444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=7.1e-12  Score=95.96  Aligned_cols=119  Identities=16%  Similarity=0.019  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc---cHHHHHHHHH
Q 024712          114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYE  190 (263)
Q Consensus       114 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~  190 (263)
                      .+.-+.-++.-+..+|++...|..+|.+|+.+|++..|...|.+++++.|++++.+..+|.++..+.   ...++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            3445555566666677777777777777777777777777777777777777777666666655432   3446666777


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          191 ELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       191 ~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +++..+|++..+...||..++..|+   +.+|...++..++..|.
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~---~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGD---YAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcCCC
Confidence            7777777777777777777777777   77777777777666664

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.45  E-value=5.5e-12  Score=86.56  Aligned_cols=99  Identities=20%  Similarity=0.205  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHH
Q 024712          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAE  174 (263)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~  174 (263)
                      ++.+|..+...|++++|+..|.+++..+|++   ..+++.+|.++...|++++|+..+++++..+|++   +.++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            3344444444444444444444444444333   2334444444444444444444444444444432   333444444


Q ss_pred             HHHhcccHHHHHHHHHHHHhhCCCC
Q 024712          175 IYVSLQMYKQAAFCYEELILSQPTV  199 (263)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~  199 (263)
                      ++...|++++|+.++.+++...|++
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHHCcCC
Confidence            4444444444444444444444444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.45  E-value=6e-11  Score=100.04  Aligned_cols=66  Identities=21%  Similarity=0.136  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       167 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ++++.+|..|...|++++|+.+++++|..+|+.+..+...|.++-..|+   +.+|...+..+-++++.
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~---~~~Aa~~~~~Ar~LD~~  260 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD---LKEAAEAMDEARELDLA  260 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCChh
Confidence            4567889999999999999999999999999999999999999999999   99999999999988774

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.45  E-value=1.4e-11  Score=87.59  Aligned_cols=116  Identities=22%  Similarity=0.240  Sum_probs=68.8

Q ss_pred             HcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChh
Q 024712           76 DCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFP  149 (263)
Q Consensus        76 ~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~  149 (263)
                      ..++...+...++.+...+|++   ..+.+.+|.+++..|++++|+..|++++...|+.   ..+...++.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            4566666666666666666655   3445556666666666666666666666655443   234555666666666666


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712          150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (263)
Q Consensus       150 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  192 (263)
                      +|+..++. +...+..+.++..+|.++...|++++|+..|+++
T Consensus       103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            66666644 2233333455556666666666666666666654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.44  E-value=1.1e-11  Score=97.68  Aligned_cols=199  Identities=15%  Similarity=0.053  Sum_probs=147.4

Q ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q 024712           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGR  102 (263)
Q Consensus        23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  102 (263)
                      .|+..+..+.... .+.+.++......+..     ...+.+..+....|.++...|++++|++.+...     ++.+...
T Consensus        67 ~av~~la~y~~~~-~~~e~~l~~l~~~~~~-----~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~a  135 (290)
T PF04733_consen   67 QAVRLLAEYLSSP-SDKESALEELKELLAD-----QAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLA  135 (290)
T ss_dssp             HHHHHHHHHHCTS-TTHHCHHHHHHHCCCT-----S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHH
T ss_pred             HHHHHHHHHHhCc-cchHHHHHHHHHHHHh-----ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHH
Confidence            4555554444432 2344444444443333     112234445556677788889999999998754     5677888


Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712          103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG--NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (263)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  180 (263)
                      ....++..+++++.|.+.++++.+.+.+..-+....+.+.+..|  .+.+|...|++..+..|.++..+..++.+...+|
T Consensus       136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~  215 (290)
T PF04733_consen  136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG  215 (290)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence            88899999999999999999999888776655555555666665  5899999999998888899999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHhhccCCC
Q 024712          181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI-LLAKKYYASTIDLTGG  235 (263)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~-~~A~~~~~~al~~~~~  235 (263)
                      +|++|...+++++..+|+++.+..+++.+....|+   . +.+.+++.+....+|.
T Consensus       216 ~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk---~~~~~~~~l~qL~~~~p~  268 (290)
T PF04733_consen  216 HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK---PTEAAERYLSQLKQSNPN  268 (290)
T ss_dssp             -HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT----TCHHHHHHHHHCHHHTTT
T ss_pred             CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999998   6 5667777777777775

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=2.6e-12  Score=101.51  Aligned_cols=190  Identities=17%  Similarity=0.070  Sum_probs=151.3

Q ss_pred             cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH---------------HhC---CCcHHHHHHHHHHHHHcCcHHHHH
Q 024712           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQ---------------KQF---PESKRVGRLEGILLEAKGLWAEAE  118 (263)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~---------------~~~---p~~~~~~~~~a~~~~~~~~~~~A~  118 (263)
                      ..+.|.........+.++...++..+|...++...               ..+   |....+....+.++...|++++|.
T Consensus       110 ~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~  189 (486)
T KOG0550|consen  110 VRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ  189 (486)
T ss_pred             eecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence            33445444455555555555555555554443211               111   222345566788888899999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHhcccHHHHH
Q 024712          119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH------------DAWRELAEIYVSLQMYKQAA  186 (263)
Q Consensus       119 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~------------~~~~~la~~~~~~g~~~~A~  186 (263)
                      ..--.++.+++.+.++++..|.+++..++.+.|+..|++++.++|+..            ..|..-|+-.++.|+|..|.
T Consensus       190 ~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~  269 (486)
T KOG0550|consen  190 SEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY  269 (486)
T ss_pred             HHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence            999999999999999999999999999999999999999999999874            35667899999999999999


Q ss_pred             HHHHHHHhhCCCCH----HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          187 FCYEELILSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       187 ~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      ++|..+|.++|++.    ..+.+.|.+...+|+   ..+|+.....++.++|. .++++.-.+.|+..
T Consensus       270 E~Yteal~idP~n~~~naklY~nra~v~~rLgr---l~eaisdc~~Al~iD~s-yikall~ra~c~l~  333 (486)
T KOG0550|consen  270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR---LREAISDCNEALKIDSS-YIKALLRRANCHLA  333 (486)
T ss_pred             HHHHHhhcCCccccchhHHHHHHhHhhhcccCC---chhhhhhhhhhhhcCHH-HHHHHHHHHHHHHH
Confidence            99999999999873    468889999999999   99999999999999995 88888877777655

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.42  E-value=1.4e-11  Score=84.52  Aligned_cols=106  Identities=17%  Similarity=0.202  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKR  137 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~  137 (263)
                      ..++..+|..+...|++++|+..|..++..+|++   +.+++.+|.++...|++++|+..+++++...|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3567889999999999999999999999999876   5688899999999999999999999999998875   568999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHH
Q 024712          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAW  169 (263)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  169 (263)
                      +|.++...|++++|+..+++++...|++..+.
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            99999999999999999999999999987654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.41  E-value=7.1e-12  Score=81.89  Aligned_cols=97  Identities=24%  Similarity=0.266  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (263)
                      +..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            44556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCcHHHHHHHHHHhhccCC
Q 024712          215 GVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       215 ~~~~~~~A~~~~~~al~~~~  234 (263)
                      +   +++|...+.+++..+|
T Consensus        83 ~---~~~a~~~~~~~~~~~~   99 (100)
T cd00189          83 K---YEEALEAYEKALELDP   99 (100)
T ss_pred             h---HHHHHHHHHHHHccCC
Confidence            6   6666666666665554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=2.1e-11  Score=93.43  Aligned_cols=123  Identities=20%  Similarity=0.041  Sum_probs=113.4

Q ss_pred             ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChhHHHHHH
Q 024712           79 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAIEWL  155 (263)
Q Consensus        79 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~  155 (263)
                      +.+..+.-++.-+..+|++.+-|..+|.+|...|+++.|...|.+++.+.|++++.+..+|.+++.+.   ...++...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            35666777888899999999999999999999999999999999999999999999999999988764   467899999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712          156 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       156 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                      ++++..+|.+..+.+.||..++..|+|.+|+..++..+...|.+..
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            9999999999999999999999999999999999999999886643

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.40  E-value=1.7e-12  Score=80.02  Aligned_cols=66  Identities=21%  Similarity=0.288  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHhhccCC
Q 024712          166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG-GVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       166 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~~~~A~~~~~~al~~~~  234 (263)
                      +..|..+|.+++..|++++|+.+|+++++.+|+++.++.++|.++...| +   +++|+..|+++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~---~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD---YEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH---HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHcCc
Confidence            4455555555555555555555555555555555555555555555555 5   5555555555555554

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.40  E-value=9.5e-12  Score=81.29  Aligned_cols=98  Identities=26%  Similarity=0.214  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (263)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  179 (263)
                      +++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            45667777788888888888888888888877777788888888888888888888888888888877888888888888


Q ss_pred             ccHHHHHHHHHHHHhhCC
Q 024712          180 QMYKQAAFCYEELILSQP  197 (263)
Q Consensus       180 g~~~~A~~~~~~al~~~p  197 (263)
                      |++++|...+.+++...|
T Consensus        82 ~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          82 GKYEEALEAYEKALELDP   99 (100)
T ss_pred             HhHHHHHHHHHHHHccCC
Confidence            888888888888877766

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.40  E-value=3.2e-11  Score=88.41  Aligned_cols=88  Identities=22%  Similarity=0.192  Sum_probs=53.4

Q ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA  173 (263)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la  173 (263)
                      ...+++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+++++...|.+...+..+|
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  113 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA  113 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            34455566666666666666666666666554432   245666666666666666666666666666666666666666


Q ss_pred             HHHHhcccHHH
Q 024712          174 EIYVSLQMYKQ  184 (263)
Q Consensus       174 ~~~~~~g~~~~  184 (263)
                      .++...|+...
T Consensus       114 ~~~~~~g~~~~  124 (172)
T PRK02603        114 VIYHKRGEKAE  124 (172)
T ss_pred             HHHHHcCChHh
Confidence            66666655433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.40  E-value=6.6e-11  Score=84.18  Aligned_cols=118  Identities=23%  Similarity=0.182  Sum_probs=103.1

Q ss_pred             HHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcccH
Q 024712          109 EAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMY  182 (263)
Q Consensus       109 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~  182 (263)
                      ...++...+...++.+....|+.   ..+...+|.+++..|++++|+..|+.++...|+.   ..+...+|.++...|++
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            35789999999999999999998   3577889999999999999999999999987665   45778899999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712          183 KQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (263)
Q Consensus       183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al  230 (263)
                      ++|+..++. +...+..+.++..+|+++...|+   +++|+..|++++
T Consensus       102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~Al  145 (145)
T PF09976_consen  102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGD---YDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHhC
Confidence            999999966 34445557788899999999999   999999999875

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.38  E-value=3.8e-12  Score=78.45  Aligned_cols=67  Identities=24%  Similarity=0.312  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhCC
Q 024712          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQP  197 (263)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p  197 (263)
                      ++..|..+|.+++..|++++|+..|.++++.+|+++.+|+.+|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            34566667777777777777777777777777777777777777777776 57777777777776665

...

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.38  E-value=2.6e-11  Score=102.11  Aligned_cols=164  Identities=21%  Similarity=0.140  Sum_probs=135.8

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  141 (263)
                      ..+..|..+|.+..+..-|++|.++.+..      +..+...+|......++|+++...++..++++|-....|+.+|.+
T Consensus       455 ~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~  528 (777)
T KOG1128|consen  455 PDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCA  528 (777)
T ss_pred             CcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHH
Confidence            33444444444443333333333333322      333555556666667999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH
Q 024712          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  221 (263)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~  221 (263)
                      ..+.+++..|...|..++..+|++..+|.+++..|...++-.+|...++++++.+-.++.+|.+...+....|.   +++
T Consensus       529 ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge---~ed  605 (777)
T KOG1128|consen  529 ALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE---FED  605 (777)
T ss_pred             HHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc---HHH
Confidence            99999999999999999999999999999999999999999999999999999998889999999999999999   999


Q ss_pred             HHHHHHHhhccCC
Q 024712          222 AKKYYASTIDLTG  234 (263)
Q Consensus       222 A~~~~~~al~~~~  234 (263)
                      |++.|.+.+.+..
T Consensus       606 a~~A~~rll~~~~  618 (777)
T KOG1128|consen  606 AIKAYHRLLDLRK  618 (777)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999887743

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.38  E-value=2.8e-11  Score=88.39  Aligned_cols=102  Identities=17%  Similarity=0.119  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (263)
                      .+..+|.++...|++++|+..|++++.+.|++   +.++..+|.++...|++++|+.++++++.++|.....+..+|.++
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~  116 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC  116 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            33444444444444444444444444443332   224444444444445555555555554444444444444444444


Q ss_pred             H-------hcCCC----CcHHHHHHHHHHhhccCCC
Q 024712          211 Y-------TLGGV----DNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       211 ~-------~~g~~----~~~~~A~~~~~~al~~~~~  235 (263)
                      .       ..|+.    ..+++|..+|++++..+|+
T Consensus       117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            4       33330    0033556666666666664

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.38  E-value=6.6e-11  Score=104.43  Aligned_cols=169  Identities=12%  Similarity=0.091  Sum_probs=139.0

Q ss_pred             ccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----------------
Q 024712           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK----------------   98 (263)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------   98 (263)
                      ...+.++++......+..       .|+....+..+|..+++.+++..+.-+  .++...+.+.                
T Consensus        43 ~~~~~deai~i~~~~l~~-------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~  113 (906)
T PRK14720         43 SENLTDEAKDICEEHLKE-------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYG  113 (906)
T ss_pred             hcCCHHHHHHHHHHHHHh-------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhh
Confidence            445677777777766655       788888888888888888887777655  6666655554                


Q ss_pred             ---HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-------------
Q 024712           99 ---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-------------  162 (263)
Q Consensus        99 ---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-------------  162 (263)
                         .+++.+|.+|..+|++++|...|++++..+|+++.+++++|..+... +.++|+.++.+++...             
T Consensus       114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W  192 (906)
T PRK14720        114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIW  192 (906)
T ss_pred             hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence               89999999999999999999999999999999999999999999999 9999999998887642             


Q ss_pred             -------CCCHHH--------------------HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 024712          163 -------MADHDA--------------------WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (263)
Q Consensus       163 -------p~~~~~--------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (263)
                             |.+.+.                    +.-+-.+|...++|++++.+++.+++.+|.|..+...++.||...
T Consensus       193 ~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k  270 (906)
T PRK14720        193 SKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK  270 (906)
T ss_pred             HHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence                   443332                    122337788889999999999999999999999999999999843

>PRK11906 transcriptional regulator; Provisional

Probab=99.37  E-value=1.6e-10  Score=93.84  Aligned_cols=162  Identities=9%  Similarity=-0.081  Sum_probs=135.7

Q ss_pred             HHHHHHHHHcC---ChHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHc---------CcHHHHHHHHHHHHhcCCCCH
Q 024712           68 EQVSIAAMDCQ---CLDVAKDCIKVLQ---KQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDP  132 (263)
Q Consensus        68 ~~la~~~~~~~---~~~~A~~~~~~~~---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~p~~~  132 (263)
                      ...|...+..+   ..+.|+.+|.+++   ..+|+.+.++..++.+++..         .+..+|....+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            44566555544   4567899999999   89999999999999988765         345688999999999999999


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH-HHHH-HH
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL-AYAD-VL  210 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~la~-~~  210 (263)
                      .++..+|.+....++++.|+..|++++.++|+.+.+|+..|.+.+..|+.++|+..++++++++|.-..+-. .+.. .|
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~  418 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY  418 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998765433 3333 44


Q ss_pred             HhcCCCCcHHHHHHHHHHhhccC
Q 024712          211 YTLGGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       211 ~~~g~~~~~~~A~~~~~~al~~~  233 (263)
                      +. ..   .++|+..|-+-.+..
T Consensus       419 ~~-~~---~~~~~~~~~~~~~~~  437 (458)
T PRK11906        419 VP-NP---LKNNIKLYYKETESE  437 (458)
T ss_pred             cC-Cc---hhhhHHHHhhccccc
Confidence            44 44   789999887755443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.37  E-value=1.9e-10  Score=97.54  Aligned_cols=140  Identities=13%  Similarity=0.057  Sum_probs=109.7

Q ss_pred             HhCCCcHHHH--HHHHHHHHHcC---cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHH
Q 024712           92 KQFPESKRVG--RLEGILLEAKG---LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG--------NFPTAIEWLNKY  158 (263)
Q Consensus        92 ~~~p~~~~~~--~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~  158 (263)
                      ...|.++.++  +..|.-+...+   +...|+.+|+++++.+|++..++..++.++....        +...+.....++
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            4445665554  45666666554   3778999999999999999888888777765542        233455555565


Q ss_pred             HHh--cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          159 LET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       159 l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +..  +|.++.++..+|......|++++|...+++++.++| +..++..+|.++...|+   +++|...|++++.++|.
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPG  485 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC
Confidence            553  777788888889888889999999999999999999 47889999999999999   99999999999999997

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.36  E-value=1e-10  Score=99.22  Aligned_cols=141  Identities=14%  Similarity=0.072  Sum_probs=115.6

Q ss_pred             CcchHHHHH--HHHHHHHHcC---ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--------cHHHHHHHHHHHHh
Q 024712           60 GPDVWTLYE--QVSIAAMDCQ---CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG--------LWAEAEKAYSSLLE  126 (263)
Q Consensus        60 ~~~~~~~~~--~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~  126 (263)
                      .|.+..+|.  ..|..++..+   ++..|+.+|+++++.+|+++.++..++.++....        +...+....++++.
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            344444443  3455555544   4789999999999999999999988888775542        34556666677666


Q ss_pred             c--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712          127 D--NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       127 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                      .  +|.++.++..+|......|++++|...+++++.++| +..++..+|.++...|++++|+..|++++.++|.++.
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            4  677788899999999999999999999999999999 5889999999999999999999999999999999875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.36  E-value=5.3e-11  Score=86.93  Aligned_cols=122  Identities=17%  Similarity=0.109  Sum_probs=94.2

Q ss_pred             ChHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHH
Q 024712           79 CLDVAKDCIKVLQKQFPE--SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIE  153 (263)
Q Consensus        79 ~~~~A~~~~~~~~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~  153 (263)
                      .+..+...+...++..+.  ....+..+|.++...|++++|+..|++++...|+.   +.++.++|.++...|++++|+.
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~   93 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE   93 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            344455555555444443  35667888999999999999999999998876653   3578899999999999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHH-------hcccHH-------HHHHHHHHHHhhCCCCH
Q 024712          154 WLNKYLETFMADHDAWRELAEIYV-------SLQMYK-------QAAFCYEELILSQPTVP  200 (263)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~  200 (263)
                      .+++++.++|.....+..+|.++.       ..|+++       +|+.+|++++..+|.+.
T Consensus        94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            999999999999888888888888       666766       66666667777787653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.36  E-value=3.2e-11  Score=104.58  Aligned_cols=170  Identities=11%  Similarity=0.026  Sum_probs=151.1

Q ss_pred             CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 024712           78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK  157 (263)
Q Consensus        78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  157 (263)
                      ++...|...|-+++..+|.-..++..+|.+|....+...|..+|+++.++++.+..++...+..|....+++.|....-.
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999776


Q ss_pred             HHHhcCCC--HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          158 YLETFMAD--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       158 ~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +-+..|..  ...|..+|..|...+++.+|+..|+.++..+|.+...|..+|.+|...|+   +..|++.|.++..++|.
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~  628 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPL  628 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcH
Confidence            66666654  35677899999999999999999999999999999999999999999999   99999999999999997


Q ss_pred             -cchhHHHhHHHHHhh
Q 024712          236 -KNTKALFGICLVMFV  250 (263)
Q Consensus       236 -~~~~~~~~l~~~~~~  250 (263)
                       ...++.-....|..+
T Consensus       629 s~y~~fk~A~~ecd~G  644 (1238)
T KOG1127|consen  629 SKYGRFKEAVMECDNG  644 (1238)
T ss_pred             hHHHHHHHHHHHHHhh
Confidence             444444455555443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.36  E-value=1.7e-10  Score=86.76  Aligned_cols=152  Identities=18%  Similarity=0.189  Sum_probs=118.1

Q ss_pred             CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH---HHH
Q 024712           96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH---DAW  169 (263)
Q Consensus        96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~  169 (263)
                      .++..++..|..++..|+|.+|+..|++++...|..+   .+.+.+|.+++..|++++|+..+++.++..|+++   .++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            3567888999999999999999999999999988764   6889999999999999999999999999999884   578


Q ss_pred             HHHHHHHHhc-----------ccHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHhcCCCCcHHH
Q 024712          170 RELAEIYVSL-----------QMYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLGGVDNILL  221 (263)
Q Consensus       170 ~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~~~~  221 (263)
                      +.+|.+++..           +...+|+..|+..+...|++..                 --..+|..|+..|.   +..
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~---y~a  159 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGK---YKA  159 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----HHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---HHH
Confidence            8888887654           3456899999999999998853                 22457889999999   999


Q ss_pred             HHHHHHHhhccCCCc--chhHHHhHHHHHhh
Q 024712          222 AKKYYASTIDLTGGK--NTKALFGICLVMFV  250 (263)
Q Consensus       222 A~~~~~~al~~~~~~--~~~~~~~l~~~~~~  250 (263)
                      |+..++.+++..|++  ...++..++.++..
T Consensus       160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~  190 (203)
T PF13525_consen  160 AIIRFQYVIENYPDTPAAEEALARLAEAYYK  190 (203)
T ss_dssp             HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            999999999999971  22344444444443

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.35  E-value=2.2e-09  Score=98.11  Aligned_cols=159  Identities=17%  Similarity=0.143  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--NPLDPVLHKRRVAIAK  143 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~  143 (263)
                      |..+...+.+.|++++|.++|+.+.+.. +.++..+..+...|.+.|++++|+.+|+++...  .|+ ...+..+...+.
T Consensus       582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~  660 (1060)
T PLN03218        582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAG  660 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Confidence            3334444444444444444444444433 223344444444444555555555555544443  122 334444455555


Q ss_pred             HcCChhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712          144 AQGNFPTAIEWLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILS--QPTVPLYHLAYADVLYTLGGVDNIL  220 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~~~  220 (263)
                      +.|++++|...++...+.. +.+...+..+...|.+.|++++|..+|++....  .| +...|..+...|...|+   ++
T Consensus       661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~---~e  736 (1060)
T PLN03218        661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQ---LP  736 (1060)
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCC---HH
Confidence            5555555555555554432 223445555555555555555555555555432  22 23445555555556666   66


Q ss_pred             HHHHHHHHhh
Q 024712          221 LAKKYYASTI  230 (263)
Q Consensus       221 ~A~~~~~~al  230 (263)
                      +|.+.|.+..
T Consensus       737 eAlelf~eM~  746 (1060)
T PLN03218        737 KALEVLSEMK  746 (1060)
T ss_pred             HHHHHHHHHH
Confidence            6666665544

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.35  E-value=2.1e-09  Score=98.19  Aligned_cols=161  Identities=10%  Similarity=-0.010  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Q 024712           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQF--PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIA  142 (263)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~  142 (263)
                      +|..+...+.+.|++++|..+|+.+....  |+ ...+..+...+...|++++|.++++.+.+.. +.+...+..+...|
T Consensus       616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay  694 (1060)
T PLN03218        616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC  694 (1060)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            34444444445555555555555544431  22 3344444444555555555555555554432 12334444455555


Q ss_pred             HHcCChhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCCCcH
Q 024712          143 KAQGNFPTAIEWLNKYLET-FMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--QPTVPLYHLAYADVLYTLGGVDNI  219 (263)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~~  219 (263)
                      .+.|++++|...|++.... ...+...|..+...|...|++++|+++|++....  .|+ ...+..+...+...|+   +
T Consensus       695 ~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~---l  770 (1060)
T PLN03218        695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDD---A  770 (1060)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCC---H
Confidence            5555555555555544332 1112344445555555555555555555544332  122 2233333444445555   5


Q ss_pred             HHHHHHHHHhhc
Q 024712          220 LLAKKYYASTID  231 (263)
Q Consensus       220 ~~A~~~~~~al~  231 (263)
                      ++|...+.+.++
T Consensus       771 e~A~~l~~~M~k  782 (1060)
T PLN03218        771 DVGLDLLSQAKE  782 (1060)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.35  E-value=5.6e-12  Score=80.87  Aligned_cols=81  Identities=27%  Similarity=0.324  Sum_probs=53.0

Q ss_pred             cCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHH
Q 024712          145 QGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA  222 (263)
Q Consensus       145 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A  222 (263)
                      +|+++.|+..++++++..|.  +...++.+|.+++..|+|++|+.++++ .+.+|.++.....+|.+++.+|+   +++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~---y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK---YEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT----HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC---HHHH
Confidence            46667777777777777664  344566667777777777777777766 66666666666666777777777   7777


Q ss_pred             HHHHHHh
Q 024712          223 KKYYAST  229 (263)
Q Consensus       223 ~~~~~~a  229 (263)
                      ++.|+++
T Consensus        78 i~~l~~~   84 (84)
T PF12895_consen   78 IKALEKA   84 (84)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcC
Confidence            7766653

>PRK15331 chaperone protein SicA; Provisional

Probab=99.34  E-value=3.7e-11  Score=84.47  Aligned_cols=98  Identities=9%  Similarity=-0.095  Sum_probs=58.6

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024712          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (263)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (263)
                      .....+..|.-++..|++++|...|+-+...+|.+++.|..||.++..+++|++|+..|..+..+++++|...+..|.|+
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~  115 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ  115 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence            33444555555556666666666666655566666666666666666666666666666666666666666666666666


Q ss_pred             HhcCCCCcHHHHHHHHHHhhc
Q 024712          211 YTLGGVDNILLAKKYYASTID  231 (263)
Q Consensus       211 ~~~g~~~~~~~A~~~~~~al~  231 (263)
                      +.+|+   ...|+..|..++.
T Consensus       116 l~l~~---~~~A~~~f~~a~~  133 (165)
T PRK15331        116 LLMRK---AAKARQCFELVNE  133 (165)
T ss_pred             HHhCC---HHHHHHHHHHHHh
Confidence            66666   6666666665555

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=8.9e-11  Score=93.15  Aligned_cols=133  Identities=19%  Similarity=0.124  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhcCC----CC-----------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 024712          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNP----LD-----------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA  164 (263)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p----~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  164 (263)
                      .....|..+++.|+|..|...|++++..-+    .+           ..++.+++.++.+++++.+|+...+++|..+|+
T Consensus       210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~  289 (397)
T KOG0543|consen  210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN  289 (397)
T ss_pred             HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence            345678889999999999999999877422    11           247889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       165 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      +..+++..|.++...|+|+.|+..|++++++.|+|..+...+..+..+...  ..++..+.|.+.+..-+
T Consensus       290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~--~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE--YEEKEKKMYANMFAKLA  357 (397)
T ss_pred             chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999999999999999888888877765  13445788888887644

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.32  E-value=8.2e-12  Score=80.08  Aligned_cols=80  Identities=29%  Similarity=0.326  Sum_probs=48.5

Q ss_pred             cCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHH
Q 024712          111 KGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC  188 (263)
Q Consensus       111 ~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~  188 (263)
                      .|+++.|+..++++++.+|.  +...++.+|.+++..|++++|+..+++ ...+|.++...+.+|.+++.+|++++|+.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            35666666666666666664  234455566666666666666666666 555666656666666666666666666666


Q ss_pred             HHH
Q 024712          189 YEE  191 (263)
Q Consensus       189 ~~~  191 (263)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.31  E-value=2.1e-10  Score=84.07  Aligned_cols=120  Identities=17%  Similarity=0.115  Sum_probs=105.1

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK  136 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  136 (263)
                      .+.....+..+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+++++...|.+...+.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            44567788999999999999999999999999887653   468899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712          137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  199 (263)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  199 (263)
                      .+|.++...|+...+...+..++.                    .+++|+.++++++..+|++
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            999999999998877766665542                    3788899999999998887

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.30  E-value=1.2e-11  Score=75.15  Aligned_cols=60  Identities=23%  Similarity=0.329  Sum_probs=24.2

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  198 (263)
                      |..++..|++++|+..|+++++.+|.++.+|+.+|.++..+|++++|+..|+++++.+|+
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            333344444444444444444444444444444444444444444444444444444443

>PRK11906 transcriptional regulator; Provisional

Probab=99.29  E-value=1.2e-09  Score=88.90  Aligned_cols=131  Identities=13%  Similarity=-0.033  Sum_probs=118.0

Q ss_pred             HHHHHHHHHcC---cHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------CChhHHHHHHHHHHHhcCCCH
Q 024712          102 RLEGILLEAKG---LWAEAEKAYSSLL---EDNPLDPVLHKRRVAIAKAQ---------GNFPTAIEWLNKYLETFMADH  166 (263)
Q Consensus       102 ~~~a~~~~~~~---~~~~A~~~~~~~~---~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~l~~~p~~~  166 (263)
                      +..|......+   ..+.|+.+|.+++   +.+|+...++..++.+++..         ....+|....+++++++|.|+
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            56666665554   4567899999999   89999999999999888764         234578899999999999999


Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       167 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .++..+|.+....++++.|+..|++++.++|+.+.+++..|.+.+..|+   .++|...++++++++|.
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~  404 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPR  404 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCch
Confidence            9999999999999999999999999999999999999999999999999   99999999999999996

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.29  E-value=3.6e-10  Score=87.63  Aligned_cols=103  Identities=16%  Similarity=0.148  Sum_probs=58.7

Q ss_pred             HHHHHHHHHH-HHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHH
Q 024712           99 RVGRLEGILL-EAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRE  171 (263)
Q Consensus        99 ~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~  171 (263)
                      ...+..+..+ ...|+|++|+..|++.+...|++   +.+++.+|.+++..|++++|+..|++++..+|++   +++++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3344444443 33456666666666666666555   3455666666666666666666666666555543   455555


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712          172 LAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       172 la~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                      +|.++...|++++|+..|+++++..|+...
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            666666666666666666666666665543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.28  E-value=3e-10  Score=92.52  Aligned_cols=122  Identities=21%  Similarity=0.242  Sum_probs=105.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 024712           69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF  148 (263)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  148 (263)
                      .+...+...+.++.|+.+++++.+.+|+   +...++.++...++..+|+..+.+++..+|.+...+...+..+...+++
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            3455555678899999999999888765   5567888888889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 024712          149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI  193 (263)
Q Consensus       149 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  193 (263)
                      +.|+...++++...|++...|+.|+.+|...|++++|+..+..+-
T Consensus       251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            999999999999999999999999999999999999998776543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=1.1e-09  Score=90.44  Aligned_cols=188  Identities=16%  Similarity=0.031  Sum_probs=147.1

Q ss_pred             hccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCc
Q 024712           34 LKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL  113 (263)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~  113 (263)
                      ....+.++++..+..++..       .|+..+++.....+..+.+.|++|+.+.+.-..... .....+..+.|.++.+.
T Consensus        23 ~~~~e~e~a~k~~~Kil~~-------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrlnk   94 (652)
T KOG2376|consen   23 GKNGEYEEAVKTANKILSI-------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLNK   94 (652)
T ss_pred             ccchHHHHHHHHHHHHHhc-------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHccc
Confidence            4456678888888888766       688888889889999999999999855543322111 12223688999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc------------------------------C
Q 024712          114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF------------------------------M  163 (263)
Q Consensus       114 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------------------------------p  163 (263)
                      .++|+..++   ..++.+.......+++++++|+|++|...|+..++.+                              |
T Consensus        95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~  171 (652)
T KOG2376|consen   95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP  171 (652)
T ss_pred             HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence            999999988   4556667778888999999999999999999875433                              2


Q ss_pred             C-CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-------CCC--------HHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 024712          164 A-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-------PTV--------PLYHLAYADVLYTLGGVDNILLAKKYYA  227 (263)
Q Consensus       164 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~--------~~~~~~la~~~~~~g~~~~~~~A~~~~~  227 (263)
                      . +.+.+++.|-++...|+|.+|++.+++++.+.       ..+        ..+...++.++...|+   .++|...|.
T Consensus       172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq---t~ea~~iy~  248 (652)
T KOG2376|consen  172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ---TAEASSIYV  248 (652)
T ss_pred             cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHH
Confidence            2 34567889999999999999999999995331       111        1367889999999999   999999999


Q ss_pred             HhhccCCC
Q 024712          228 STIDLTGG  235 (263)
Q Consensus       228 ~al~~~~~  235 (263)
                      ..++.+|.
T Consensus       249 ~~i~~~~~  256 (652)
T KOG2376|consen  249 DIIKRNPA  256 (652)
T ss_pred             HHHHhcCC
Confidence            99999886

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.28  E-value=1.9e-09  Score=83.07  Aligned_cols=152  Identities=12%  Similarity=0.072  Sum_probs=124.3

Q ss_pred             CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHH
Q 024712           96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL---HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAW  169 (263)
Q Consensus        96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~  169 (263)
                      .++...+..|..+...|+|++|+..|++++...|..+.+   ...+|.+++..+++++|+..+++.++.+|++   +.++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            466778889999999999999999999999999998754   4889999999999999999999999999888   4578


Q ss_pred             HHHHHHHHhcc------------------cHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHhcC
Q 024712          170 RELAEIYVSLQ------------------MYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLG  214 (263)
Q Consensus       170 ~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g  214 (263)
                      +.+|.++...+                  ...+|+..|++.++..|+...                 --..+|..|++.|
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~  189 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG  189 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88888764443                  235788999999999998742                 1235778899999


Q ss_pred             CCCcHHHHHHHHHHhhccCCC--cchhHHHhHHHHHhh
Q 024712          215 GVDNILLAKKYYASTIDLTGG--KNTKALFGICLVMFV  250 (263)
Q Consensus       215 ~~~~~~~A~~~~~~al~~~~~--~~~~~~~~l~~~~~~  250 (263)
                      .   +..|+.-++.+++..|+  ....+++.+...+..
T Consensus       190 ~---y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~  224 (243)
T PRK10866        190 A---YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQ  224 (243)
T ss_pred             c---hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            9   99999999999999887  334455555555443

>PRK15331 chaperone protein SicA; Provisional

Probab=99.27  E-value=1.5e-10  Score=81.45  Aligned_cols=98  Identities=13%  Similarity=0.050  Sum_probs=66.0

Q ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (263)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  176 (263)
                      .....+..|.-++..|++++|...|+-+...+|.++..+..+|.++..++++++|+..|..+..++++++...+..|.|+
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~  115 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ  115 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence            34455556666666666666666666666666666666666666666666666676666666666666666666667777


Q ss_pred             HhcccHHHHHHHHHHHHh
Q 024712          177 VSLQMYKQAAFCYEELIL  194 (263)
Q Consensus       177 ~~~g~~~~A~~~~~~al~  194 (263)
                      +..|+.+.|..+|+.++.
T Consensus       116 l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        116 LLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHhCCHHHHHHHHHHHHh
Confidence            777777777666666666

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.27  E-value=6.9e-09  Score=78.14  Aligned_cols=170  Identities=14%  Similarity=0.047  Sum_probs=140.8

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH---HH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LH  135 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~  135 (263)
                      .....+...|...++.|++++|.+.|+.+...+|.   ...+...++.++...+++++|+...++.+.+.|.++.   ++
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            35677888999999999999999999999999985   4578889999999999999999999999999998864   56


Q ss_pred             HHHHHHHHHcC--------ChhHHHHHHHHHHHhcCCCHH-----------------HHHHHHHHHHhcccHHHHHHHHH
Q 024712          136 KRRVAIAKAQG--------NFPTAIEWLNKYLETFMADHD-----------------AWRELAEIYVSLQMYKQAAFCYE  190 (263)
Q Consensus       136 ~~l~~~~~~~g--------~~~~A~~~~~~~l~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~  190 (263)
                      +..|.+++..=        -...|+..|+..+...|++.-                 --..+|..|.+.|.+-.|+.-++
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~  191 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE  191 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            66777766432        245788999999999999831                 12357899999999999999999


Q ss_pred             HHHhhCCCC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          191 ELILSQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       191 ~al~~~p~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .+++..|+.   ..++..+..+|..+|-   .++|.+ ..+++..|+.
T Consensus       192 ~v~e~y~~t~~~~eaL~~l~eaY~~lgl---~~~a~~-~~~vl~~N~p  235 (254)
T COG4105         192 EVLENYPDTSAVREALARLEEAYYALGL---TDEAKK-TAKVLGANYP  235 (254)
T ss_pred             HHHhccccccchHHHHHHHHHHHHHhCC---hHHHHH-HHHHHHhcCC
Confidence            999987766   4578888999999998   777765 4567777765

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.27  E-value=4.3e-11  Score=72.75  Aligned_cols=64  Identities=22%  Similarity=0.232  Sum_probs=41.2

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH
Q 024712          103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH  166 (263)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  166 (263)
                      .+|..+...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|+++++.+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            3566666666666666666666666666666666666666666666666666666666666653

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.24  E-value=4.6e-08  Score=77.56  Aligned_cols=169  Identities=14%  Similarity=0.067  Sum_probs=109.7

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------------
Q 024712           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN------------  128 (263)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------  128 (263)
                      .+...+....+......|+++.|...+.++.+..|.++.+......+|...|+|.+...++.++-+..            
T Consensus       150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~  229 (400)
T COG3071         150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ  229 (400)
T ss_pred             CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH
Confidence            34566777788888999999999999999999999999999999999999999988888777764421            


Q ss_pred             ------------C------------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712          129 ------------P------------------LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  178 (263)
Q Consensus       129 ------------p------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  178 (263)
                                  +                  .++.....++.-+...|+.++|.+..+.+++..-+.. ....++  ...
T Consensus       230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~  306 (400)
T COG3071         230 QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLR  306 (400)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcC
Confidence                        1                  1233444556666777888888777777665432221 111111  112


Q ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          179 LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       179 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      -++...=++..++.++..|++|..+..||..+++.+.   +.+|..+|+.+++..|+
T Consensus       307 ~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~---w~kA~~~leaAl~~~~s  360 (400)
T COG3071         307 PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL---WGKASEALEAALKLRPS  360 (400)
T ss_pred             CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH---HHHHHHHHHHHHhcCCC
Confidence            3444444455555555555555555555555555555   55555555555555554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.24  E-value=7.7e-09  Score=87.47  Aligned_cols=179  Identities=13%  Similarity=0.019  Sum_probs=136.0

Q ss_pred             hcCCCccHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccc---------cCcch-HHHHHHHHHHHHHcCChHHHHHH
Q 024712           17 VDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSA---------LGPDV-WTLYEQVSIAAMDCQCLDVAKDC   86 (263)
Q Consensus        17 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~la~~~~~~~~~~~A~~~   86 (263)
                      +.+|......-++.+.. ++.+...+..+...+.........         .+|.. ..++..++..+...|++++|+.+
T Consensus       138 l~KgvPslF~~lk~Ly~-d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~  216 (517)
T PF12569_consen  138 LRKGVPSLFSNLKPLYK-DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEY  216 (517)
T ss_pred             HhcCCchHHHHHHHHHc-ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            45555565555555544 333444555555555433221111         12221 23556789999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--C
Q 024712           87 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--A  164 (263)
Q Consensus        87 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--~  164 (263)
                      ++++++..|..++.+...|.++...|++.+|...++.+-.+++.+-.+....+..+.+.|+.++|...+......+.  .
T Consensus       217 Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~  296 (517)
T PF12569_consen  217 IDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL  296 (517)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc
Confidence            99999999999999999999999999999999999999999999999989999999999999999999887765442  1


Q ss_pred             C-------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712          165 D-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (263)
Q Consensus       165 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  196 (263)
                      .       .+.....|.+|...|++..|++.|..+.+..
T Consensus       297 ~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  297 SNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF  335 (517)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            1       2333567999999999999999999888663

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.24  E-value=1.1e-09  Score=97.54  Aligned_cols=176  Identities=11%  Similarity=-0.005  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAK  143 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~  143 (263)
                      .++..+...|.+.|++++|.++|+.+.   +.+...|..+...|...|++++|+.+|+++.... .-+...+..+...+.
T Consensus       260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~  336 (697)
T PLN03081        260 FVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS  336 (697)
T ss_pred             eeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            345557777888888888888887663   3466778888888888888888888888886643 224556777788888


Q ss_pred             HcCChhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHH
Q 024712          144 AQGNFPTAIEWLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA  222 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A  222 (263)
                      ..|++++|.+.+...++.. +.+..++..+...|.+.|++++|..+|++..+   .+...|..+...|...|+   .++|
T Consensus       337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~---~~~A  410 (697)
T PLN03081        337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGR---GTKA  410 (697)
T ss_pred             hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCC---HHHH
Confidence            8888888888888887764 45566777788888888888888888877643   245567777788888888   8888


Q ss_pred             HHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          223 KKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       223 ~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                      ++.|++..+..-.++...+..++.++.
T Consensus       411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~  437 (697)
T PLN03081        411 VEMFERMIAEGVAPNHVTFLAVLSACR  437 (697)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence            888887765432234444455544443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.23  E-value=7.6e-08  Score=76.35  Aligned_cols=184  Identities=15%  Similarity=0.027  Sum_probs=142.2

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  138 (263)
                      .+.....+..-+.+.-..|+++.+-.++.++.+..++ ...+....+.+....|+++.|..-..++++..|.++.+....
T Consensus       114 ~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa  193 (400)
T COG3071         114 GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLA  193 (400)
T ss_pred             CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHH
Confidence            4455566666777888899999999999999998553 445677889999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhc------------------------------------------CCCHHHHHHHHHHH
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLETF------------------------------------------MADHDAWRELAEIY  176 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~------------------------------------------p~~~~~~~~la~~~  176 (263)
                      ..+|...|++.+....+.+.-+..                                          .+++..-..++.-+
T Consensus       194 ~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~l  273 (400)
T COG3071         194 LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERL  273 (400)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHH
Confidence            999999999988887776643321                                          12344555677788


Q ss_pred             HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      ...|++++|.+..+++++..-+.. ....++  ...-++   ...=++..++.+...|+ ++..+..|...|.+
T Consensus       274 i~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d---~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k  340 (400)
T COG3071         274 IRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGD---PEPLIKAAEKWLKQHPE-DPLLLSTLGRLALK  340 (400)
T ss_pred             HHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCC---chHHHHHHHHHHHhCCC-ChhHHHHHHHHHHH
Confidence            899999999999999998765433 222222  123455   77778888888888886 66777777777666

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.23  E-value=9.7e-10  Score=87.00  Aligned_cols=185  Identities=18%  Similarity=0.136  Sum_probs=138.0

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--CCC---
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLD---  131 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~---  131 (263)
                      -...|...|..+...+++++|...|.++....-      .....+...+.++... ++++|+.++++++...  .++   
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~  112 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ  112 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence            456788889999999999999999999877542      1234455566666554 9999999999999852  222   


Q ss_pred             -HHHHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----
Q 024712          132 -PVLHKRRVAIAKAQ-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----  199 (263)
Q Consensus       132 -~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----  199 (263)
                       ..++..+|.+|... |++++|+.+|+++++....+      ...+..+|.++...|+|++|+..|+++....-++    
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~  192 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK  192 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence             24788999999998 99999999999999874322      3456789999999999999999999998753221    


Q ss_pred             H---HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC----cchhHHHhHHHHHhhc
Q 024712          200 P---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG----KNTKALFGICLVMFVC  251 (263)
Q Consensus       200 ~---~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~----~~~~~~~~l~~~~~~~  251 (263)
                      .   ..+...+.|++..|+   +-.|...+.+....+|+    .+..+...|+.++...
T Consensus       193 ~~~~~~~l~a~l~~L~~~D---~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~  248 (282)
T PF14938_consen  193 YSAKEYFLKAILCHLAMGD---YVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG  248 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT----HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence            1   245667889999999   99999999999999885    2345556666666553

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.23  E-value=8e-10  Score=90.04  Aligned_cols=120  Identities=19%  Similarity=0.073  Sum_probs=109.5

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHH
Q 024712          104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK  183 (263)
Q Consensus       104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~  183 (263)
                      +-.++...++++.|+..+++..+.+|+   +...++.++...++..+|+..+++++...|.+...+...+..+...++++
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~  251 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE  251 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence            344556678999999999999998875   45668999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712          184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (263)
Q Consensus       184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a  229 (263)
                      .|+.+.++++...|++...|..|+.+|...|+   +++|+-.+..+
T Consensus       252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLNs~  294 (395)
T PF09295_consen  252 LALEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHhcC
Confidence            99999999999999999999999999999999   99999777654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.22  E-value=1.3e-09  Score=84.56  Aligned_cols=104  Identities=18%  Similarity=0.176  Sum_probs=93.1

Q ss_pred             HHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHH
Q 024712           65 TLYEQVSIAA-MDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKR  137 (263)
Q Consensus        65 ~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~  137 (263)
                      ...+..+..+ +..|++++|+..|+.++..+|++   +.+++.+|.+|+..|++++|+..|++++...|++   +++++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            4555566655 66799999999999999999987   5799999999999999999999999999887775   678999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHH
Q 024712          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDA  168 (263)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  168 (263)
                      +|.++...|++++|+..|+++++.+|++..+
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            9999999999999999999999999998754

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.22  E-value=9.8e-10  Score=74.46  Aligned_cols=96  Identities=19%  Similarity=0.059  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---CHHHHHHH
Q 024712           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA---DHDAWREL  172 (263)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l  172 (263)
                      .+.+..|.++...|+.++|+..|++++......   ..++..+|..+...|++++|+..+++.+..+|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            466778888888888888888888888865443   347778888888888888888888888888777   66777778


Q ss_pred             HHHHHhcccHHHHHHHHHHHHh
Q 024712          173 AEIYVSLQMYKQAAFCYEELIL  194 (263)
Q Consensus       173 a~~~~~~g~~~~A~~~~~~al~  194 (263)
                      +.++...|++++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8888888888888888777664

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.21  E-value=3.4e-09  Score=77.41  Aligned_cols=182  Identities=15%  Similarity=0.080  Sum_probs=135.0

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  141 (263)
                      +....+...|..|-..|-+.-|+--|.+++.+.|+-+.++..+|..+...|+|+.|.+.|...++++|....++.+.|..
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~  142 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  142 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence            56777888888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHH--HHHHH--------------HHHH--------------HhcccHHHHHHHHHH
Q 024712          142 AKAQGNFPTAIEWLNKYLETFMADHD--AWREL--------------AEIY--------------VSLQMYKQAAFCYEE  191 (263)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--------------a~~~--------------~~~g~~~~A~~~~~~  191 (263)
                      ++--|++.-|.+.+.+-.+.+|++|-  .|..+              ..-+              +..|+.. -...+++
T Consensus       143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS-~e~l~~~  221 (297)
T COG4785         143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKIS-EETLMER  221 (297)
T ss_pred             eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhcc-HHHHHHH
Confidence            99999999999999999888888863  23221              1111              1112211 1122333


Q ss_pred             HHhhCCCC-------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712          192 LILSQPTV-------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV  247 (263)
Q Consensus       192 al~~~p~~-------~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~  247 (263)
                      +..-..++       ...++.+|..+...|+   .++|...|+-++..+--..+...+.+...
T Consensus       222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~---~~~A~~LfKLaiannVynfVE~RyA~~EL  281 (297)
T COG4785         222 LKADATDNTSLAEHLTETYFYLGKYYLSLGD---LDEATALFKLAVANNVYNFVEHRYALLEL  281 (297)
T ss_pred             HHhhccchHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            33322333       2367778888888899   99999999998876543334444444433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.20  E-value=2.8e-10  Score=89.77  Aligned_cols=175  Identities=15%  Similarity=0.027  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQF-P-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA  144 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  144 (263)
                      ...++..+...++-+.++..++..+... + .++.+....|.++...|++++|+..+.+.     .+.++......++..
T Consensus        69 v~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~  143 (290)
T PF04733_consen   69 VRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLK  143 (290)
T ss_dssp             HHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHH
Confidence            3444544433345556666665544332 2 35666777888999999999999887654     567888888999999


Q ss_pred             cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHH
Q 024712          145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ--MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA  222 (263)
Q Consensus       145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A  222 (263)
                      .++++.|.+.++..-+.+.++.-.....+.+.+..|  .+++|...|++.....|.++..+..++.++..+|+   +++|
T Consensus       144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~---~~eA  220 (290)
T PF04733_consen  144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH---YEEA  220 (290)
T ss_dssp             TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT----HHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC---HHHH
Confidence            999999999999998887776655555555666655  58999999999888888889999999999999999   9999


Q ss_pred             HHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          223 KKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       223 ~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      ...+.+++..+|. ++..+.+++.|+..
T Consensus       221 e~~L~~al~~~~~-~~d~LaNliv~~~~  247 (290)
T PF04733_consen  221 EELLEEALEKDPN-DPDTLANLIVCSLH  247 (290)
T ss_dssp             HHHHHHHCCC-CC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence            9999999999996 88888888887555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=1.1e-09  Score=83.73  Aligned_cols=185  Identities=17%  Similarity=0.153  Sum_probs=145.9

Q ss_pred             cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (263)
                      ..+.+.+++......+.       +|..-..+..+|.+|+...++..|-.+|+++...+|......+..+..+...+.+.
T Consensus        23 d~ry~DaI~~l~s~~Er-------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A   95 (459)
T KOG4340|consen   23 DARYADAIQLLGSELER-------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA   95 (459)
T ss_pred             HhhHHHHHHHHHHHHhc-------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence            34456666665555444       56566667778999999999999999999999999988888888899999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712          116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       116 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  195 (263)
                      .|+.+...+.....-...+...-+.+.+..+++..+....++.-  ..++.+...+.|-+.++.|+++.|.+-|+.+++.
T Consensus        96 DALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv  173 (459)
T KOG4340|consen   96 DALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQV  173 (459)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhh
Confidence            99888776664321222345555667777888877765554431  1256788899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          196 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       196 ~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      ...++..-++++.+++..|+   +..|+++....++.
T Consensus       174 sGyqpllAYniALaHy~~~q---yasALk~iSEIieR  207 (459)
T KOG4340|consen  174 SGYQPLLAYNLALAHYSSRQ---YASALKHISEIIER  207 (459)
T ss_pred             cCCCchhHHHHHHHHHhhhh---HHHHHHHHHHHHHh
Confidence            99999999999999999999   99999998887764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.17  E-value=4.1e-09  Score=93.95  Aligned_cols=163  Identities=9%  Similarity=-0.017  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAI  141 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~  141 (263)
                      ..|..+...|.+.|+.++|+++|+++..... -+...+..+...+...|..++|.++|+.+.+..+-  +...+..+...
T Consensus       392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~  471 (697)
T PLN03081        392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL  471 (697)
T ss_pred             eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence            3455666777777777777777777766431 23444555666667777777777777777653322  23456667777


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH
Q 024712          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  221 (263)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~  221 (263)
                      +.+.|++++|.+.+++.- ..| +...|..+...+...|+++.|...+++++.+.|++...+..++.+|...|+   +++
T Consensus       472 l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~---~~~  546 (697)
T PLN03081        472 LGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR---QAE  546 (697)
T ss_pred             HHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC---HHH
Confidence            777788888877776531 223 345677777778888888888888888888888877778888888888888   888


Q ss_pred             HHHHHHHhhcc
Q 024712          222 AKKYYASTIDL  232 (263)
Q Consensus       222 A~~~~~~al~~  232 (263)
                      |.+.++...+.
T Consensus       547 A~~v~~~m~~~  557 (697)
T PLN03081        547 AAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHc
Confidence            88888766543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=3.2e-09  Score=84.46  Aligned_cols=131  Identities=15%  Similarity=0.066  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---------------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD  131 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~  131 (263)
                      ....|..+++.|+|..|...|++++...+.               -..++.+++.++..+++|.+|+....+++..+|+|
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            334688899999999999999998885441               12367789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHH-HHHHHHHHHhhCC
Q 024712          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ-AAFCYEELILSQP  197 (263)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p  197 (263)
                      ..++++.|.++...|+++.|+..|+++++..|.|..+...+..+.....++.+ ..+.|...+..-+
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999988877666654 4778888776544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.16  E-value=1.8e-10  Score=70.71  Aligned_cols=64  Identities=31%  Similarity=0.411  Sum_probs=35.4

Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024712          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  207 (263)
                      ..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            4455555555555555555555555555555555555555555555555555555554444443

...

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.16  E-value=3.6e-08  Score=88.89  Aligned_cols=228  Identities=14%  Similarity=0.091  Sum_probs=178.4

Q ss_pred             hcCCCccHHHHHHHHHHh-ccCChhHHHHHHHHHhcCccc-ccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 024712           17 VDNGGGGAWEYLCLVKKL-KVRRPDKVLRHGLSILNDPKK-RSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF   94 (263)
Q Consensus        17 ~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   94 (263)
                      ++.....++.+++.|.-. ...+.+.+...+...+..-.. .....-+.|.+|.++-..|   |.-+.-.+.|+++.+..
T Consensus      1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqyc 1527 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYC 1527 (1710)
T ss_pred             HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhc
Confidence            344445666666655542 344555666666666544111 1111113566666655554   77777888899888754


Q ss_pred             CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHHH
Q 024712           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWREL  172 (263)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l  172 (263)
                       +...++..+..+|...+++++|.++++..++.......+|..++..++.+++-+.|...+++|++.-|.  ........
T Consensus      1528 -d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1528 -DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKF 1606 (1710)
T ss_pred             -chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence             334677888999999999999999999999988878899999999999999999999999999999998  67788888


Q ss_pred             HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC-cchhHHHhHHHHHhhc
Q 024712          173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLVMFVC  251 (263)
Q Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~-~~~~~~~~l~~~~~~~  251 (263)
                      |.+-++.|+.+.+...|+..+...|.-.+.|.-+.+.-.+.|+   .+-++..|++++.+.=. ...+++|-.++.+-+.
T Consensus      1607 AqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred             HHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999   99999999999876432 5788888888777664

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=2e-09  Score=84.08  Aligned_cols=160  Identities=13%  Similarity=0.076  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA  144 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  144 (263)
                      .+-.-+|.+++..|+|++|...|.-+.+...-+..++..++.+++..|.|.+|.....+    .|+++-....+-.+..+
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlfhlahk  133 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLFHLAHK  133 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHH
Confidence            33444677777778888888877777775555666777778888877888777654443    35555444444444455


Q ss_pred             cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHH
Q 024712          145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK  224 (263)
Q Consensus       145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~  224 (263)
                      .++-++ +-.|...+.   +..+-...||.+.+..-.|++|+++|++++..+|+....-..+|.||+++.-   ++.+.+
T Consensus       134 lndEk~-~~~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY---ydvsqe  206 (557)
T KOG3785|consen  134 LNDEKR-ILTFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY---YDVSQE  206 (557)
T ss_pred             hCcHHH-HHHHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch---hhhHHH
Confidence            555433 333333333   2224456678888888889999999999999888888888888999999988   888888


Q ss_pred             HHHHhhccCCC
Q 024712          225 YYASTIDLTGG  235 (263)
Q Consensus       225 ~~~~al~~~~~  235 (263)
                      .+.--++..|+
T Consensus       207 vl~vYL~q~pd  217 (557)
T KOG3785|consen  207 VLKVYLRQFPD  217 (557)
T ss_pred             HHHHHHHhCCC
Confidence            88888888775

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.13  E-value=4.6e-09  Score=72.39  Aligned_cols=85  Identities=16%  Similarity=0.099  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHK  136 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~  136 (263)
                      ....+...|...++.|+|.+|++.|+.+...+|.   ...+.+.++.+|+..+++++|+..+++.++++|.++   .+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            4556777899999999999999999999999984   557888999999999999999999999999999886   4777


Q ss_pred             HHHHHHHHcCC
Q 024712          137 RRVAIAKAQGN  147 (263)
Q Consensus       137 ~l~~~~~~~g~  147 (263)
                      ..|.+++.+..
T Consensus        89 ~~gL~~~~~~~   99 (142)
T PF13512_consen   89 MRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHhh
Confidence            78888777654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.10  E-value=9.1e-10  Score=68.52  Aligned_cols=66  Identities=24%  Similarity=0.247  Sum_probs=40.8

Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLA  205 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  205 (263)
                      .++...+++++|+.++++++..+|.++..|...|.++...|++++|+..++++++..|+++.+...
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            455566666666666666666666666666666666666666666666666666666665554433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.10  E-value=5.1e-10  Score=68.60  Aligned_cols=64  Identities=23%  Similarity=0.231  Sum_probs=33.7

Q ss_pred             HcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712          110 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA  173 (263)
Q Consensus       110 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la  173 (263)
                      ..|++++|+..|++++..+|++..++..++.++...|++++|...+++++..+|+++.++..++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            3455555555555555555555555555555555555555555555555555555544444433

...

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=2.3e-08  Score=82.89  Aligned_cols=153  Identities=13%  Similarity=0.035  Sum_probs=125.3

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 024712           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT  150 (263)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  150 (263)
                      ...+...|+|++|.+...+++...|+++.+....-.++.+.++|++|+...+.-......+. ..+..+.|.+++++.++
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~De   97 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKLDE   97 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccHHH
Confidence            33456789999999999999999999999999999999999999999855444332222222 22678999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC------------------------------CC-C
Q 024712          151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ------------------------------PT-V  199 (263)
Q Consensus       151 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------------------p~-~  199 (263)
                      |+..++   -.++.+..+....|.+++.+|+|++|...|+..++.+                              |. +
T Consensus        98 alk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s  174 (652)
T KOG2376|consen   98 ALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS  174 (652)
T ss_pred             HHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence            999999   4567777788889999999999999999999885432                              22 3


Q ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712          200 PLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (263)
Q Consensus       200 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~al  230 (263)
                      ...+++.|.++...|+   |.+|++.+++++
T Consensus       175 yel~yN~Ac~~i~~gk---y~qA~elL~kA~  202 (652)
T KOG2376|consen  175 YELLYNTACILIENGK---YNQAIELLEKAL  202 (652)
T ss_pred             HHHHHHHHHHHHhccc---HHHHHHHHHHHH
Confidence            4578899999999999   999999999993

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.05  E-value=1.5e-08  Score=77.05  Aligned_cols=99  Identities=20%  Similarity=0.207  Sum_probs=45.7

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHH
Q 024712          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEI  175 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~  175 (263)
                      +..|.-++..|+|..|...|...+...|++   +.+++.||.+++.+|++++|...|..+++..|++   +++++.+|.+
T Consensus       145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~  224 (262)
T COG1729         145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS  224 (262)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence            334444444444444444444444444433   2344444444444444444444444444443333   3444444444


Q ss_pred             HHhcccHHHHHHHHHHHHhhCCCCH
Q 024712          176 YVSLQMYKQAAFCYEELILSQPTVP  200 (263)
Q Consensus       176 ~~~~g~~~~A~~~~~~al~~~p~~~  200 (263)
                      ...+|+.++|...|+++++..|...
T Consensus       225 ~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         225 LGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            4444444444444444444444443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.05  E-value=1.4e-07  Score=71.82  Aligned_cols=172  Identities=21%  Similarity=0.186  Sum_probs=104.6

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHcCcHHHHHHHHHHHHhcCC---CCHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI-LLEAKGLWAEAEKAYSSLLEDNP---LDPVLH  135 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~  135 (263)
                      .+.....+...+......+++..++..+.......+.+.......+. ++...|+++.|...+.+++...|   ......
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  170 (291)
T COG0457          91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL  170 (291)
T ss_pred             ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence            34445555556666666666666666666666655554444444444 56666666666666666665554   233344


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712          136 KRRVAIAKAQGNFPTAIEWLNKYLETFMA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (263)
Q Consensus       136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (263)
                      ...+..+...++++.++..+.+++...+. ....+..++..+...+.++.|+..+..++...|.....+..++..+...+
T Consensus       171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (291)
T COG0457         171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG  250 (291)
T ss_pred             HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence            44455555666666666666666666666 46666666666666666666666666666666665555555555555555


Q ss_pred             CCCcHHHHHHHHHHhhccCC
Q 024712          215 GVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       215 ~~~~~~~A~~~~~~al~~~~  234 (263)
                      .   ++.+...+.+++...|
T Consensus       251 ~---~~~~~~~~~~~~~~~~  267 (291)
T COG0457         251 R---YEEALEALEKALELDP  267 (291)
T ss_pred             C---HHHHHHHHHHHHHhCc
Confidence            5   6666666666666655

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.05  E-value=1.1e-08  Score=69.30  Aligned_cols=96  Identities=20%  Similarity=0.146  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT---VPLYHLAY  206 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l  206 (263)
                      .+++.++.++-..|+.++|+..|++++...+..   ..+++.+|..+...|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467889999999999999999999999976554   568899999999999999999999999999888   67788889


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712          207 ADVLYTLGGVDNILLAKKYYASTID  231 (263)
Q Consensus       207 a~~~~~~g~~~~~~~A~~~~~~al~  231 (263)
                      +.++...|+   .++|+..+..++.
T Consensus        82 Al~L~~~gr---~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGR---PKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCC---HHHHHHHHHHHHH
Confidence            999999999   9999999988775

>PLN03077 Protein ECB2; Provisional

Probab=99.04  E-value=8.3e-08  Score=87.69  Aligned_cols=155  Identities=15%  Similarity=0.109  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHH---------
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH---------  135 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~---------  135 (263)
                      .++..+...|.+.|++++|.++|+++.+   .+...|..+...|...|++++|+..|+++....+.+...+         
T Consensus       425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~  501 (857)
T PLN03077        425 VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR  501 (857)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh
Confidence            3444455566666666666666665432   2334455555566666666666666666654322122111         


Q ss_pred             --------------------------HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHH
Q 024712          136 --------------------------KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCY  189 (263)
Q Consensus       136 --------------------------~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  189 (263)
                                                ..+...|.+.|+.++|...|+..    +.+...|..+...|...|+.++|+.+|
T Consensus       502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf  577 (857)
T PLN03077        502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELF  577 (857)
T ss_pred             hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence                                      12234455555555555555543    345556666666666666666666666


Q ss_pred             HHHHhh--CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712          190 EELILS--QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (263)
Q Consensus       190 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al  230 (263)
                      ++..+.  .|+. ..+..+-..+...|.   .++|..+|....
T Consensus       578 ~~M~~~g~~Pd~-~T~~~ll~a~~~~g~---v~ea~~~f~~M~  616 (857)
T PLN03077        578 NRMVESGVNPDE-VTFISLLCACSRSGM---VTQGLEYFHSME  616 (857)
T ss_pred             HHHHHcCCCCCc-ccHHHHHHHHhhcCh---HHHHHHHHHHHH
Confidence            665543  2332 233444445566666   666666666655

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.04  E-value=1.8e-08  Score=76.64  Aligned_cols=105  Identities=15%  Similarity=0.171  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVA  140 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~  140 (263)
                      .++.|..++..|+|..|...|...++.+|+   .+.+++.+|.+++.+|+++.|...|..+....|++   ++.++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            678899999999999999999999999996   46789999999999999999999999999987665   689999999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHH
Q 024712          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRE  171 (263)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  171 (263)
                      +...+|+.++|...|+++++..|+...+-..
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999999999999999876543

>PLN03077 Protein ECB2; Provisional

Probab=99.03  E-value=4.3e-08  Score=89.56  Aligned_cols=162  Identities=9%  Similarity=0.039  Sum_probs=119.7

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--CHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--DPVLHKRR  138 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l  138 (263)
                      +...|..+...+...|+.++|+.+|+++.+..  |+.. .+..+-..+...|.+++|..+|+.+.+..+-  +...+..+
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l  631 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV  631 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence            34456667777888888888888888877643  4433 3444455677788888888888888744322  34567778


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCc
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN  218 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  218 (263)
                      ..++.+.|++++|...+++. ...|+ ..+|..|-..+...|+.+.+....++++++.|+++..+..++.+|...|+   
T Consensus       632 v~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~---  706 (857)
T PLN03077        632 VDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK---  706 (857)
T ss_pred             HHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC---
Confidence            88888888888888888765 24443 56677777777778888888888888888888888888888888888888   


Q ss_pred             HHHHHHHHHHhh
Q 024712          219 ILLAKKYYASTI  230 (263)
Q Consensus       219 ~~~A~~~~~~al  230 (263)
                      +++|.+..+...
T Consensus       707 ~~~a~~vr~~M~  718 (857)
T PLN03077        707 WDEVARVRKTMR  718 (857)
T ss_pred             hHHHHHHHHHHH
Confidence            888887776654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.02  E-value=2.8e-09  Score=66.32  Aligned_cols=64  Identities=28%  Similarity=0.270  Sum_probs=36.7

Q ss_pred             HHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHH
Q 024712          106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW  169 (263)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  169 (263)
                      .+|...+++++|++++++++..+|+++..+..+|.++...|++.+|+..++++++..|+++.+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            3455555555555555555555555555555555555555555555555555555555555443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.02  E-value=4.4e-07  Score=73.85  Aligned_cols=200  Identities=18%  Similarity=0.167  Sum_probs=154.0

Q ss_pred             CChhHHHHHHHHHhcCcccccccCcchHHHHHHHHH--H---HHHcCChHHHHHHHHHHHHhCCC----cHHHHHHHHHH
Q 024712           37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSI--A---AMDCQCLDVAKDCIKVLQKQFPE----SKRVGRLEGIL  107 (263)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~---~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~a~~  107 (263)
                      ++.+.+.+.-...+..  -+.......|.-|.-+-.  +   -+...+.+.+.++|+..+++-|+    .+.+|.+.|..
T Consensus       336 g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~f  413 (677)
T KOG1915|consen  336 GDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQF  413 (677)
T ss_pred             CCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            4555565555555544  111111234443333222  1   24568999999999999999994    56789999999


Q ss_pred             HHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHH
Q 024712          108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF  187 (263)
Q Consensus       108 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~  187 (263)
                      ..+..+...|...+-.++...|.+. .+.....+-.++++++.....|++.++..|.+..+|...|.+-..+|+.+.|..
T Consensus       414 eIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRa  492 (677)
T KOG1915|consen  414 EIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARA  492 (677)
T ss_pred             HHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHH
Confidence            9999999999999999999999854 456677788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHH--HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712          188 CYEELILSQPTVPL--YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF  242 (263)
Q Consensus       188 ~~~~al~~~p~~~~--~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~  242 (263)
                      .|+-|+....-+..  .|...-..-...|.   +++|...|++.|+.++...++.-+
T Consensus       493 ifelAi~qp~ldmpellwkaYIdFEi~~~E---~ekaR~LYerlL~rt~h~kvWisF  546 (677)
T KOG1915|consen  493 IFELAISQPALDMPELLWKAYIDFEIEEGE---FEKARALYERLLDRTQHVKVWISF  546 (677)
T ss_pred             HHHHHhcCcccccHHHHHHHhhhhhhhcch---HHHHHHHHHHHHHhcccchHHHhH
Confidence            99999987655533  34445555666788   999999999999998853333333

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.02  E-value=2.6e-07  Score=75.17  Aligned_cols=168  Identities=14%  Similarity=0.149  Sum_probs=142.1

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  142 (263)
                      ....|..-|.--..++++..|..++++++..+..+..+|...+.+-........|..++.+++..-|.--..|+....+-
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE  151 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME  151 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            34455566666777889999999999999988888889999999999999999999999999999998888899888888


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHH
Q 024712          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA  222 (263)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A  222 (263)
                      ..+|+...|.+.|++.++..|+ ..+|......-...+..+.|...|++-+-.+|. ...|...+..-...|+   ..-|
T Consensus       152 E~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~---~~~a  226 (677)
T KOG1915|consen  152 EMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGN---VALA  226 (677)
T ss_pred             HHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCc---HHHH
Confidence            8999999999999999998886 467877778888888889999999998888875 5678888888888888   8888


Q ss_pred             HHHHHHhhccCCC
Q 024712          223 KKYYASTIDLTGG  235 (263)
Q Consensus       223 ~~~~~~al~~~~~  235 (263)
                      ...|++|++.-.+
T Consensus       227 R~VyerAie~~~~  239 (677)
T KOG1915|consen  227 RSVYERAIEFLGD  239 (677)
T ss_pred             HHHHHHHHHHhhh
Confidence            8888888876543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.01  E-value=2.7e-10  Score=90.51  Aligned_cols=167  Identities=19%  Similarity=0.122  Sum_probs=121.8

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC------C
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP------L  130 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p------~  130 (263)
                      ...+|.++|.+|+..++|.+|+++-..-+..      .-..+...-++|..+..+|.|++|+.+..+-+....      .
T Consensus        54 LSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~  133 (639)
T KOG1130|consen   54 LSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVL  133 (639)
T ss_pred             HHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHh
Confidence            4567889999999999999999875433221      123445556789999999999999999888776432      2


Q ss_pred             CHHHHHHHHHHHHHcCC--------------------hhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHH
Q 024712          131 DPVLHKRRVAIAKAQGN--------------------FPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQ  184 (263)
Q Consensus       131 ~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~  184 (263)
                      ...+++++|.+|...|+                    ++.|.++|..-+++....      ..++-+||+.|+.+|+|++
T Consensus       134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~  213 (639)
T KOG1130|consen  134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ  213 (639)
T ss_pred             hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence            24588999999988774                    333455555544443222      2356678888999999999


Q ss_pred             HHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          185 AAFCYEELILSQPTV------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       185 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      |+..-+.=+.+....      -.++.++|.++..+|+   ++.|+++|++.+.+
T Consensus       214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~---fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN---FELAIEHYKLTLNL  264 (639)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc---cHhHHHHHHHHHHH
Confidence            999888777665433      2378889999999999   99999999887654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.98  E-value=5.2e-08  Score=67.23  Aligned_cols=104  Identities=19%  Similarity=0.142  Sum_probs=76.4

Q ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH---HHHH
Q 024712           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH---DAWR  170 (263)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~  170 (263)
                      .+..++..|...+..|+|++|++.|+.+....|..+   .+...++.+++..+++++|+..+++.++++|.++   .+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            456677778888888888888888888888776553   5677788888888888888888888888887774   4567


Q ss_pred             HHHHHHHhccc---------------HHHHHHHHHHHHhhCCCCH
Q 024712          171 ELAEIYVSLQM---------------YKQAAFCYEELILSQPTVP  200 (263)
Q Consensus       171 ~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~  200 (263)
                      ..|.+++.+..               ..+|...|++++...|++.
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            77777776655               5566666666666666553

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=1.7e-08  Score=72.90  Aligned_cols=111  Identities=26%  Similarity=0.264  Sum_probs=90.8

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  176 (263)
                      ..-|.-++..|+|++|..-|..++..-|..+     ..+.+.|.+.++++.++.|+..+.++++++|....++...|.+|
T Consensus        99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay  178 (271)
T KOG4234|consen   99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY  178 (271)
T ss_pred             HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence            3457778888999999999999998887654     36677888888899999999999999999999888888889999


Q ss_pred             HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712          177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (263)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (263)
                      .....|++|+..|++.++.+|....+...++++--.
T Consensus       179 ek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~  214 (271)
T KOG4234|consen  179 EKMEKYEEALEDYKKILESDPSRREAREAIARLPPK  214 (271)
T ss_pred             HhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence            888999999999999999998877665555544333

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.97  E-value=4.4e-07  Score=69.03  Aligned_cols=170  Identities=21%  Similarity=0.191  Sum_probs=150.0

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQK--QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  140 (263)
                      ........+..+...+++..+...+.....  ..+.....+...+..+...+++..++..+..++...+.+.......+.
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (291)
T COG0457          58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL  137 (291)
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence            356667788888899999999999999987  678888899999999999999999999999999988877555555666


Q ss_pred             -HHHHcCChhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCC
Q 024712          141 -IAKAQGNFPTAIEWLNKYLETFM---ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-VPLYHLAYADVLYTLGG  215 (263)
Q Consensus       141 -~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~  215 (263)
                       ++...|+++.|...+.+++...|   .........+..+...++++.|+..+.+++...+. ....+..++.++...++
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence             89999999999999999988776   34566677777788899999999999999999999 68999999999999999


Q ss_pred             CCcHHHHHHHHHHhhccCCC
Q 024712          216 VDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       216 ~~~~~~A~~~~~~al~~~~~  235 (263)
                         +..|...+..++...|.
T Consensus       218 ---~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         218 ---YEEALEYYEKALELDPD  234 (291)
T ss_pred             ---HHHHHHHHHHHHhhCcc
Confidence               99999999999999885

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.97  E-value=1.5e-09  Score=84.42  Aligned_cols=107  Identities=15%  Similarity=0.086  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  146 (263)
                      ....|..|+.+|.|++|+.+|.+.+..+|.++..+.+.+..|++...|..|...+..++.++.....+|.+.+..-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            34578899999999999999999999999999999999999999999999999999999999888889999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712          147 NFPTAIEWLNKYLETFMADHDAWRELA  173 (263)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~~~~~~~la  173 (263)
                      +..+|.+.++.++++.|.+.+..-.++
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a  206 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLA  206 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence            999999999999999999866554443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.96  E-value=1.6e-07  Score=67.25  Aligned_cols=149  Identities=19%  Similarity=0.092  Sum_probs=93.7

Q ss_pred             HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 024712           76 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE-DNPLDPVLHKRRVAIAKAQGNFPTAIEW  154 (263)
Q Consensus        76 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~  154 (263)
                      +.=|.+...+-..+.++.-|. ..-.+.+|..+...|++.+|...|++++. ..-+++..+..+++..+..+++..|...
T Consensus        68 q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t  146 (251)
T COG4700          68 QKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT  146 (251)
T ss_pred             HhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence            333455444444444444443 23345567777777777777777777765 2345566667777777777777777777


Q ss_pred             HHHHHHhcCCC--HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712          155 LNKYLETFMAD--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (263)
Q Consensus       155 ~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a  229 (263)
                      +++..+.+|..  ++....+|..+..+|.+.+|...|+.++...|+ +......+..+..+|+   ..+|...+..+
T Consensus       147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr---~~ea~aq~~~v  219 (251)
T COG4700         147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR---LREANAQYVAV  219 (251)
T ss_pred             HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc---hhHHHHHHHHH
Confidence            77777766543  455566677777777777777777777777665 4555566666777776   55555444443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.94  E-value=1.1e-06  Score=66.45  Aligned_cols=134  Identities=16%  Similarity=0.094  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh----c--CCCHHHHHH
Q 024712           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET----F--MADHDAWRE  171 (263)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----~--p~~~~~~~~  171 (263)
                      .+.+.+..++...|+|.-....+.++++.+ |..+.....+|.+.++.|+.+.|..+++.+-+.    +  .....+..+
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            466778888888999999999999999988 567778888999999999999999888854322    2  223445567


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       172 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .+.++.-.+++..|...|.+++..+|.++.+..+.|-|+..+|+   ...|++..+.+++..|.
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~---l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK---LKDALKQLEAMVQQDPR  318 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH---HHHHHHHHHHHhccCCc
Confidence            77888888999999999999999999999999999999999999   99999999999999987

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.92  E-value=4.3e-08  Score=75.18  Aligned_cols=171  Identities=13%  Similarity=0.044  Sum_probs=140.2

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 024712           74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE  153 (263)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  153 (263)
                      +.+..+|..|++++..-.+..|.+-..+..+|.+|....+|..|..+|++.-...|.........+..++..+.+..|+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            35678999999999999999999888999999999999999999999999999999998888889999999999999998


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712          154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~  233 (263)
                      ..........-.......-+.+.+..+++..+..+.++.-  ..++.....+.|-+.++.|+   ++.|.+-|..+++..
T Consensus       100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegq---yEaAvqkFqaAlqvs  174 (459)
T KOG4340|consen  100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQ---YEAAVQKFQAALQVS  174 (459)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeecccc---HHHHHHHHHHHHhhc
Confidence            8776553211112333445667778888888877665431  11457788899999999999   999999999999986


Q ss_pred             CCcchhHHHhHHHHHhh
Q 024712          234 GGKNTKALFGICLVMFV  250 (263)
Q Consensus       234 ~~~~~~~~~~l~~~~~~  250 (263)
                      . -++..-|.+++|.+.
T Consensus       175 G-yqpllAYniALaHy~  190 (459)
T KOG4340|consen  175 G-YQPLLAYNLALAHYS  190 (459)
T ss_pred             C-CCchhHHHHHHHHHh
Confidence            5 477788888888765

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.92  E-value=6.2e-08  Score=76.75  Aligned_cols=171  Identities=15%  Similarity=0.155  Sum_probs=124.6

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--C----cHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCC--CC-
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP--E----SKRVGRLEGILLEAK-GLWAEAEKAYSSLLEDNP--LD-  131 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~----~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p--~~-  131 (263)
                      .....+...+.++.+ .++++|+.++++++..+-  +    -..++..+|.+|... |++++|+++|+++.+...  +. 
T Consensus        73 ~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~  151 (282)
T PF14938_consen   73 EAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP  151 (282)
T ss_dssp             HHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence            345566676666655 499999999999998653  2    245678899999998 999999999999998621  22 


Q ss_pred             ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712          132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                         ..++..++.++...|+|++|+..|++.....-.+       ...++..+.|++..|++..|...+++....+|....
T Consensus       152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~  231 (282)
T PF14938_consen  152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS  231 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence               2467889999999999999999999998753221       234567788999999999999999999999986633


Q ss_pred             -----HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          202 -----YHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       202 -----~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                           ....+-.+ +..|+.+.+..|+..|.+...++|
T Consensus       232 s~E~~~~~~l~~A-~~~~D~e~f~~av~~~d~~~~ld~  268 (282)
T PF14938_consen  232 SREYKFLEDLLEA-YEEGDVEAFTEAVAEYDSISRLDN  268 (282)
T ss_dssp             SHHHHHHHHHHHH-HHTT-CCCHHHHCHHHTTSS---H
T ss_pred             cHHHHHHHHHHHH-HHhCCHHHHHHHHHHHcccCccHH
Confidence                 33333333 355677779999999998877765

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=1.2e-07  Score=74.33  Aligned_cols=192  Identities=15%  Similarity=-0.007  Sum_probs=131.8

Q ss_pred             HHhhhcCCC-ccHHHHHHHHHHhccCChhHHHHHHHHHhcC-----------cccccccCcchHHHHHHHHHHHHHcCCh
Q 024712           13 LENQVDNGG-GGAWEYLCLVKKLKVRRPDKVLRHGLSILND-----------PKKRSALGPDVWTLYEQVSIAAMDCQCL   80 (263)
Q Consensus        13 ~~~~~~~~~-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~la~~~~~~~~~   80 (263)
                      ++.-+.+.. .+|+..+.--+ ...+..+..+++|.....-           .......+.....++..++-+.+-.|.|
T Consensus        29 Ledfls~rDytGAislLefk~-~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKL-NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhh-ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence            444444444 46676666444 2223334466666553211           0011111233456677888888999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 024712           81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE  160 (263)
Q Consensus        81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  160 (263)
                      .+|..+-.    ..|+++.....+-.+..+.++-++-..+-+..-.    ...-...++.+.+..-.|.+|+..|.+++.
T Consensus       108 ~eA~~~~~----ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~  179 (557)
T KOG3785|consen  108 IEAKSIAE----KAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ  179 (557)
T ss_pred             HHHHHHHh----hCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99987654    4577777777777777777776554443333222    223345677777777889999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 024712          161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (263)
Q Consensus       161 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (263)
                      .+|.-...-..+|.||+++.-|+-+.+++.-.+...|+.+-+....+-..+.+
T Consensus       180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl  232 (557)
T KOG3785|consen  180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL  232 (557)
T ss_pred             cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence            99998888899999999999999999999999999999988877777666655

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.91  E-value=3.3e-08  Score=71.40  Aligned_cols=99  Identities=14%  Similarity=0.056  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD  208 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  208 (263)
                      .+..-|.-++..|+|.+|...|..+|...|..+     ..+.+.|.++.+++.++.|+..+.++++++|.+..++.+.|.
T Consensus        97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe  176 (271)
T KOG4234|consen   97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE  176 (271)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence            345568888999999999999999999998874     356778999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          209 VLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       209 ~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +|.++..   +++|+..|.++++.+|.
T Consensus       177 ayek~ek---~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  177 AYEKMEK---YEEALEDYKKILESDPS  200 (271)
T ss_pred             HHHhhhh---HHHHHHHHHHHHHhCcc
Confidence            9999999   99999999999999997

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.90  E-value=1.2e-08  Score=79.52  Aligned_cols=109  Identities=20%  Similarity=0.132  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (263)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  180 (263)
                      ....|.-|+.+|.|++|+.+|.+++..+|.++..+.+.+..|+++.++..|...+..++.++.....+|...|.....+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712          181 MYKQAAFCYEELILSQPTVPLYHLAYADV  209 (263)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (263)
                      ...+|.+.++.++.+.|++......++.+
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            99999999999999999987665554443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=1.9e-06  Score=65.13  Aligned_cols=161  Identities=13%  Similarity=-0.031  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA  144 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  144 (263)
                      .....-+.+++..|++++|.+.+...     .+.++...-..++.++.+++-|...++++.+.+.+  ..+..++..+..
T Consensus       109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~  181 (299)
T KOG3081|consen  109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVK  181 (299)
T ss_pred             HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHH
Confidence            34445677888999999999988763     34566667778899999999999999999987544  445556665554


Q ss_pred             ----cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712          145 ----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  220 (263)
Q Consensus       145 ----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~  220 (263)
                          .+...+|.-+|+..-+..|..+.....++.+...+|+|++|...++.++..++++|..+.++-.+-...|.   ..
T Consensus       182 la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk---d~  258 (299)
T KOG3081|consen  182 LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK---DA  258 (299)
T ss_pred             HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC---Ch
Confidence                24688999999999998888899999999999999999999999999999999999999999999999998   55


Q ss_pred             HHHHHH-HHhhccCCC
Q 024712          221 LAKKYY-ASTIDLTGG  235 (263)
Q Consensus       221 ~A~~~~-~~al~~~~~  235 (263)
                      ++..-+ .+.....|.
T Consensus       259 ~~~~r~l~QLk~~~p~  274 (299)
T KOG3081|consen  259 EVTERNLSQLKLSHPE  274 (299)
T ss_pred             HHHHHHHHHHHhcCCc
Confidence            555444 444444443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.88  E-value=1.1e-06  Score=62.93  Aligned_cols=117  Identities=17%  Similarity=0.067  Sum_probs=56.9

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcC
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQK-QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQG  146 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g  146 (263)
                      ++..+.+.|++.+|...|++++. .+.+++.....++...+..+++..|...+++..+-+|.  .++....++..+..+|
T Consensus        95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g  174 (251)
T COG4700          95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQG  174 (251)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcC
Confidence            44455555555555555554443 23344555555555555555555555555555554443  2334444555555555


Q ss_pred             ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHH
Q 024712          147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF  187 (263)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~  187 (263)
                      ++.+|...|+.++...|+ +.+....+..+.++|+.++|..
T Consensus       175 ~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         175 KYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             CchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence            555555555555554443 2333344444455554444433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.87  E-value=1.5e-07  Score=69.02  Aligned_cols=134  Identities=19%  Similarity=0.050  Sum_probs=111.5

Q ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (263)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  176 (263)
                      .+..++..|..|-..|-+.-|.-.|..++.+.|+-+.+++.+|..+...|+++.|.+.|+..++++|...-+..+.|..+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHH-HHhhccCC
Q 024712          177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY-ASTIDLTG  234 (263)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~-~~al~~~~  234 (263)
                      +.-|++.-|.+-+.+-.+.+|++|.--..+-..-.+ -+   +.+|...+ +++-..+.
T Consensus       144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k-~d---P~~A~tnL~qR~~~~d~  198 (297)
T COG4785         144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQK-LD---PKQAKTNLKQRAEKSDK  198 (297)
T ss_pred             eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhh-CC---HHHHHHHHHHHHHhccH
Confidence            999999999999999999999998643333222222 23   56665544 45555543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.87  E-value=2.7e-06  Score=71.78  Aligned_cols=178  Identities=13%  Similarity=0.079  Sum_probs=144.0

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-P---ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------  131 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------  131 (263)
                      .....|..+|..|-..|+.+.|..+|++++... +   +-..+|...|..-.+..+++.|..+.+++... |..      
T Consensus       385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~y  463 (835)
T KOG2047|consen  385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYY  463 (835)
T ss_pred             ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhh
Confidence            456678889999999999999999999999864 3   34678888899999999999999999999764 322      


Q ss_pred             -------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC-
Q 024712          132 -------------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP-  197 (263)
Q Consensus       132 -------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-  197 (263)
                                   ..+|..++......|-++.....|++.+.+.--.|.+..+.|..+.....++++.+.|++.+.+.+ 
T Consensus       464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~  543 (835)
T KOG2047|consen  464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW  543 (835)
T ss_pred             cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence                         236777888888999999999999999999999999999999999999999999999999998864 


Q ss_pred             -CCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHhhccCCCcchhHH
Q 024712          198 -TVPLYHLAYADVLYTL-GGVDNILLAKKYYASTIDLTGGKNTKAL  241 (263)
Q Consensus       198 -~~~~~~~~la~~~~~~-g~~~~~~~A~~~~~~al~~~~~~~~~~~  241 (263)
                       .-.++|...-.-+... |. -..+.|...|++|++..|+...+..
T Consensus       544 p~v~diW~tYLtkfi~rygg-~klEraRdLFEqaL~~Cpp~~aKti  588 (835)
T KOG2047|consen  544 PNVYDIWNTYLTKFIKRYGG-TKLERARDLFEQALDGCPPEHAKTI  588 (835)
T ss_pred             ccHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhcCCHHHHHHH
Confidence             4455665543333322 21 1289999999999999997444443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.86  E-value=1.7e-08  Score=82.18  Aligned_cols=70  Identities=14%  Similarity=-0.004  Sum_probs=65.6

Q ss_pred             cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH---HHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712          127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA---WRELAEIYVSLQMYKQAAFCYEELILSQ  196 (263)
Q Consensus       127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~  196 (263)
                      .+|+++..++++|..++..|++++|+..|+++++++|++..+   |+++|.+|..+|++++|+.++++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            478889999999999999999999999999999999999865   9999999999999999999999999973

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.86  E-value=2e-08  Score=81.81  Aligned_cols=70  Identities=17%  Similarity=0.096  Sum_probs=66.3

Q ss_pred             hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 024712           93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHKRRVAIAKAQGNFPTAIEWLNKYLETF  162 (263)
Q Consensus        93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  162 (263)
                      .+|+++..++++|.+|+..|+|++|+..|+++++++|++..   +|+++|.+|..+|++++|+.++++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999999999999999999999985   49999999999999999999999999973

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.85  E-value=6.1e-07  Score=81.33  Aligned_cols=179  Identities=12%  Similarity=0.100  Sum_probs=149.2

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC----cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PE----SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL  134 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  134 (263)
                      +|+....|.+.....++.++.++|+++.++++..- +.    ...+|..+-++...-|.-+.-.+.|+++.+.. +...+
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V 1532 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTV 1532 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHH
Confidence            56666777777777788999999999999999853 32    22344444444555576677888999988753 34578


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHh
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLAYADVLYT  212 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~  212 (263)
                      +..|..+|...+.+++|.++++..++.+.+....|..+|..++.+++-+.|..++.+|++.-|.  +.......|++-++
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            8899999999999999999999999999999999999999999999999999999999999997  67788899999999


Q ss_pred             cCCCCcHHHHHHHHHHhhccCCC-cchhHHH
Q 024712          213 LGGVDNILLAKKYYASTIDLTGG-KNTKALF  242 (263)
Q Consensus       213 ~g~~~~~~~A~~~~~~al~~~~~-~~~~~~~  242 (263)
                      .|+   .+.++..|+-.+...|. .+.|..|
T Consensus      1613 ~GD---aeRGRtlfEgll~ayPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1613 YGD---AERGRTLFEGLLSAYPKRTDLWSVY 1640 (1710)
T ss_pred             cCC---chhhHHHHHHHHhhCccchhHHHHH
Confidence            999   99999999999999997 5555444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=2.7e-07  Score=71.94  Aligned_cols=157  Identities=11%  Similarity=-0.102  Sum_probs=132.0

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcC
Q 024712           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-NPLD---PVLHKRRVAIAKAQG  146 (263)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~---~~~~~~l~~~~~~~g  146 (263)
                      +......|++.+|...++++++.+|.+.-++..--..++.+|+...-...+++++.. +|+.   ..+.-.++..+...|
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            444566789999999999999999999988888889999999999999999999987 6665   456667788889999


Q ss_pred             ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhcCCCCcHHHH
Q 024712          147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----PLYHLAYADVLYTLGGVDNILLA  222 (263)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~~~~A  222 (263)
                      -+++|.+...++++++|.+..+...++.++...|++.++.+.+.+.-..-...    .-.|...|.++...+.   |+.|
T Consensus       190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae---ye~a  266 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE---YEKA  266 (491)
T ss_pred             cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc---hhHH
Confidence            99999999999999999999999999999999999999999887754332211    1135567778888888   9999


Q ss_pred             HHHHHHhh
Q 024712          223 KKYYASTI  230 (263)
Q Consensus       223 ~~~~~~al  230 (263)
                      .+.|.+-+
T Consensus       267 leIyD~ei  274 (491)
T KOG2610|consen  267 LEIYDREI  274 (491)
T ss_pred             HHHHHHHH
Confidence            99998754

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.84  E-value=4.6e-08  Score=69.70  Aligned_cols=66  Identities=24%  Similarity=0.221  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712          114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN----------FPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (263)
Q Consensus       114 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  179 (263)
                      |+.|.+.++.....+|.+.+.+.+-|..+..+.+          +++|+.-|++++.++|+..++++.+|+++..+
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~   82 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL   82 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            3445555555555555555555555544443321          23344444444444555555555555544433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.80  E-value=1.2e-08  Score=81.46  Aligned_cols=179  Identities=16%  Similarity=0.038  Sum_probs=131.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCc--------------------HHHHHHHHH
Q 024712           69 QVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGL--------------------WAEAEKAYS  122 (263)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~--------------------~~~A~~~~~  122 (263)
                      ++|..+--.|.|++|+.++.+-+....      ....+++++|.+|...|+                    ++.|.++|.
T Consensus       100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~  179 (639)
T KOG1130|consen  100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM  179 (639)
T ss_pred             cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence            467777778999999998877766432      356788999999976543                    345556666


Q ss_pred             HHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHH
Q 024712          123 SLLEDNPLD------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYE  190 (263)
Q Consensus       123 ~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~  190 (263)
                      .-+++....      ..++-++|..|+-+|+|+.|+..-+.-+.+....      -.++.++|+++.-.|+++.|++.|+
T Consensus       180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK  259 (639)
T KOG1130|consen  180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK  259 (639)
T ss_pred             HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence            555543222      2367788889999999999999888877664332      3467899999999999999999999


Q ss_pred             HHHhhC----CCC--HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC-----cchhHHHhHHHHHhh
Q 024712          191 ELILSQ----PTV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-----KNTKALFGICLVMFV  250 (263)
Q Consensus       191 ~al~~~----p~~--~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~l~~~~~~  250 (263)
                      ..+.+.    ...  ...++.||..|....+   +++|+.++.+-+.+...     ...++.|.|..+...
T Consensus       260 ~tl~LAielg~r~vEAQscYSLgNtytll~e---~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a  327 (639)
T KOG1130|consen  260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKE---VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA  327 (639)
T ss_pred             HHHHHHHHhcchhHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            877542    222  4568889999999999   99999999987765321     356666666665544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=1.5e-06  Score=65.72  Aligned_cols=135  Identities=14%  Similarity=0.072  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------CCCHHHHHHH
Q 024712           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN------PLDPVLHKRR  138 (263)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l  138 (263)
                      +...++.++...|+|.-....+++.++.+ |.++.....+|.+..+.|+.+.|..+++++-+.+      .....+..+.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            34456777788899999999999999998 5788889999999999999999999999665432      2234577788


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  200 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  200 (263)
                      +.++.-.+++..|...+.+++..+|.++.+..+.|.|....|+..+|++.++.++...|...
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            88899999999999999999999999999999999999999999999999999999999753

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.80  E-value=1.5e-07  Score=67.08  Aligned_cols=67  Identities=12%  Similarity=-0.055  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----------cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712           80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG----------LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (263)
Q Consensus        80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  146 (263)
                      ++.|++.++.....+|.+++.++.-|.++..+.          -+++|+.-|++++.++|+..+++..+|.++...+
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            567888888888888888888888887776552          3466777777888888888888888888887664

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.78  E-value=4.8e-07  Score=71.49  Aligned_cols=131  Identities=11%  Similarity=0.059  Sum_probs=58.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712           68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (263)
Q Consensus        68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  146 (263)
                      ..+.....+.+..+.|+.+|.++.+..+....++...|.+... .++.+.|..+|+.+++..|.+...|..+...+...|
T Consensus         5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~   84 (280)
T PF05843_consen    5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN   84 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC
Confidence            3333444444445555555555543333344444444444333 233333555555555555555555555555555555


Q ss_pred             ChhHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712          147 NFPTAIEWLNKYLETFMADH---DAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (263)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  198 (263)
                      +.+.|...|++++..-|...   .+|......-...|+.+....+.+++.+..|.
T Consensus        85 d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   85 DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             -HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            55555555555554433332   34444444444445555555555555544444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.78  E-value=4e-06  Score=63.45  Aligned_cols=136  Identities=16%  Similarity=0.224  Sum_probs=115.3

Q ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH---HHH
Q 024712           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---AWR  170 (263)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~  170 (263)
                      .+..++.-|....+.|+|++|+..|+++.+.+|..+   .+...++..+++.+++++|+..+++-+..+|+++.   +++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            567788899999999999999999999999988775   57888999999999999999999999999998854   566


Q ss_pred             HHHHHHHhc--------ccHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHhcCCCCcHHHHHHH
Q 024712          171 ELAEIYVSL--------QMYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLGGVDNILLAKKY  225 (263)
Q Consensus       171 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~~~~A~~~  225 (263)
                      ..|.+++..        .-..+|+..|++.+...|++.-                 --..+|..|.+.|.   +-.|+..
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~---~~AA~nR  189 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA---YVAAINR  189 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---hHHHHHH
Confidence            677776543        3456889999999999997732                 22457889999999   9999999


Q ss_pred             HHHhhccCCC
Q 024712          226 YASTIDLTGG  235 (263)
Q Consensus       226 ~~~al~~~~~  235 (263)
                      ++.+++.-|+
T Consensus       190 ~~~v~e~y~~  199 (254)
T COG4105         190 FEEVLENYPD  199 (254)
T ss_pred             HHHHHhcccc
Confidence            9999998775

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.78  E-value=1.6e-08  Score=63.73  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=11.2

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHH
Q 024712          169 WRELAEIYVSLQMYKQAAFCYEELI  193 (263)
Q Consensus       169 ~~~la~~~~~~g~~~~A~~~~~~al  193 (263)
                      +..+|.++...|++++|+.++++++
T Consensus        49 ~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen   49 LNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444444444444444444444444

...

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.76  E-value=1.1e-06  Score=59.18  Aligned_cols=96  Identities=19%  Similarity=-0.001  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH----HHHHHHHHHH
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----VLHKRRVAIA  142 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~  142 (263)
                      ++..|..+...|+.+.|++.|.+++...|..+.++.+.+..+.-.|+.++|+..+.+++++.....    .++...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            333455555555555555555555555555555555555555555555555555555555543221    2445555555


Q ss_pred             HHcCChhHHHHHHHHHHHhc
Q 024712          143 KAQGNFPTAIEWLNKYLETF  162 (263)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~  162 (263)
                      ..+|+.+.|...|+.+-++.
T Consensus       126 Rl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HHhCchHHHHHhHHHHHHhC
Confidence            55555555555555555443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.74  E-value=7.4e-07  Score=59.98  Aligned_cols=99  Identities=21%  Similarity=0.133  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----HHHHHHHHHHH
Q 024712          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIY  176 (263)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~  176 (263)
                      +-..|..+...|+.+.|++.|.+++.+-|..+.++++.+..+.-+|+.++|+..+++++++....    -.++...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            34568888899999999999999999999999999999999999999999999999999986544    34678899999


Q ss_pred             HhcccHHHHHHHHHHHHhhCCCC
Q 024712          177 VSLQMYKQAAFCYEELILSQPTV  199 (263)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~  199 (263)
                      ..+|+-+.|...|+.+-++...+
T Consensus       126 Rl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHhCchHHHHHhHHHHHHhCCHH
Confidence            99999999999999887776544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.71  E-value=1.2e-06  Score=76.16  Aligned_cols=137  Identities=17%  Similarity=0.162  Sum_probs=119.9

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 024712           74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE  153 (263)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  153 (263)
                      ..+.+++..|+..+.+++..+|+.+.+....|.+++++|+.++|..+++..-...+++...+-.+..+|..+|+.++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            45779999999999999999999999999999999999999999999998888888888889999999999999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024712          154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  211 (263)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (263)
                      +|++++..+|+ ......+-.+|.+.+.|.+-.+.--+..+..|.++..++....+.+
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil  155 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL  155 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence            99999999999 8888899999999999987777766677778877665444443333

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.71  E-value=9.8e-07  Score=69.74  Aligned_cols=133  Identities=15%  Similarity=0.100  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA-QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  178 (263)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  178 (263)
                      +|..+.....+.+..+.|..+|.++....+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            566666777777778888888888886666667788888888666 4555558888888888888888888888888888


Q ss_pred             cccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          179 LQMYKQAAFCYEELILSQPTVP---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       179 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .|+.+.|..+|++++..-|...   .+|......-...|+   .+...+.+.++.+..|.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPE  139 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTT
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhh
Confidence            8888888888888887766554   467777777778888   88888888888777765

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.71  E-value=1.6e-08  Score=63.67  Aligned_cols=67  Identities=24%  Similarity=0.331  Sum_probs=56.0

Q ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh---CC-CC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          163 MADHDAWRELAEIYVSLQMYKQAAFCYEELILS---QP-TV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       163 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      |+-..++..+|.+|..+|++++|+.+|++++++   .+ ++   ..++.++|.++...|+   +++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD---YEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhh
Confidence            445678899999999999999999999999965   22 22   4478899999999999   99999999999876

...

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.68  E-value=1.6e-05  Score=64.32  Aligned_cols=191  Identities=16%  Similarity=0.016  Sum_probs=121.9

Q ss_pred             hhhHHHHHHHHhhhcCCCc----cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHH---
Q 024712            4 KTEETQLNRLENQVDNGGG----GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMD---   76 (263)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~----~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---   76 (263)
                      ++....|.+++..+++...    --+..+-.+  ++..+.+.++.+...+-..+   ...-++...+-.+.|.++.+   
T Consensus       120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSy--RdiqdydamI~Lve~l~~~p---~~~~~~~~~i~~~yafALnRrn~  194 (374)
T PF13281_consen  120 KELAKELRRIRQRLDDPELLSPDIVINLLLSY--RDIQDYDAMIKLVETLEALP---TCDVANQHNIKFQYAFALNRRNK  194 (374)
T ss_pred             HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHh--hhhhhHHHHHHHHHHhhccC---ccchhcchHHHHHHHHHHhhccc
Confidence            4566778888888876331    123333333  44567888888888875441   11134566777788888888   


Q ss_pred             cCChHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHc---------CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712           77 CQCLDVAKDCIKV-LQKQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (263)
Q Consensus        77 ~~~~~~A~~~~~~-~~~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  146 (263)
                      .|+.++|+.++.. +....+.+++.+...|.+|...         ...++|+..|.++.+.+|+.. .-.+++.++...|
T Consensus       195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g  273 (374)
T PF13281_consen  195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAG  273 (374)
T ss_pred             CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcC
Confidence            8999999999999 4455567899999999988653         357899999999999997544 3456677777777


Q ss_pred             ChhHHHHHHHHHH-H-------h----cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 024712          147 NFPTAIEWLNKYL-E-------T----FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  200 (263)
Q Consensus       147 ~~~~A~~~~~~~l-~-------~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  200 (263)
                      ...+....+++.. .       .    .-.+-+..-.++.+....|++++|+..+++++.+.|..+
T Consensus       274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            5443332222222 0       0    111223333455555566666666666666666655443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.66  E-value=4.7e-06  Score=76.91  Aligned_cols=167  Identities=14%  Similarity=0.038  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------H
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-----RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------P  132 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~  132 (263)
                      ..+...++..+...|++++|...++.++...|...     .+...+|.++...|++++|...+++++......      .
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~  531 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL  531 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence            33444567788889999999999999988655322     345678888999999999999999998753221      2


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-----C
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-----V  199 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~  199 (263)
                      .++..++.++...|++++|...+++++.....        ....+..+|.++...|++++|...+.+++.....     .
T Consensus       532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  611 (903)
T PRK04841        532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ  611 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence            35677899999999999999999999876321        1234557889999999999999999999875321     2


Q ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712          200 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       200 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~  233 (263)
                      ...+..+|.++...|+   +++|...+.++..+.
T Consensus       612 ~~~~~~la~~~~~~G~---~~~A~~~l~~a~~~~  642 (903)
T PRK04841        612 LQCLAMLAKISLARGD---LDNARRYLNRLENLL  642 (903)
T ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence            4456678999999999   999999999987653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.63  E-value=1.5e-06  Score=68.55  Aligned_cols=185  Identities=14%  Similarity=0.064  Sum_probs=139.9

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------  131 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------  131 (263)
                      ...++.+++..+-...++.+++.+-+.-+......     ..+...++..+..++.|+++++.|++++.....+      
T Consensus        82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE  161 (518)
T KOG1941|consen   82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE  161 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence            45567777777777778888887776666543322     2466778999999999999999999999864332      


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC----C------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-----
Q 024712          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA----D------HDAWRELAEIYVSLQMYKQAAFCYEELILSQ-----  196 (263)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~----~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----  196 (263)
                      ..+...+|.++....++++|..+..++.++..+    +      ..+.+.++..+..+|+...|.++.+++.++.     
T Consensus       162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd  241 (518)
T KOG1941|consen  162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD  241 (518)
T ss_pred             eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence            247788999999999999999999999886432    2      2356778899999999999999999998763     


Q ss_pred             -CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC-----cchhHHHhHHHHHhh
Q 024712          197 -PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-----KNTKALFGICLVMFV  250 (263)
Q Consensus       197 -p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~l~~~~~~  250 (263)
                       +.......-+|++|...|+   .+.|..-|+.+....-+     ..+.++-|.+.|...
T Consensus       242 ra~~arc~~~~aDIyR~~gd---~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~  298 (518)
T KOG1941|consen  242 RALQARCLLCFADIYRSRGD---LERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET  298 (518)
T ss_pred             hHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence             2334567789999999999   99999999998765332     345566666666543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.62  E-value=2e-06  Score=67.91  Aligned_cols=220  Identities=14%  Similarity=0.016  Sum_probs=157.0

Q ss_pred             ccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHH
Q 024712           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILL  108 (263)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~  108 (263)
                      ...+.+.++..|...+.+.    ........++..+..+..+.|.+++++..--..++..-      -...++..++..+
T Consensus        18 ~s~~~~~al~~w~~~L~~l----~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~   93 (518)
T KOG1941|consen   18 QSNQTEKALQVWTKVLEKL----SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSN   93 (518)
T ss_pred             cCchHHHHHHHHHHHHHHH----HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344566777777766551    11123455566677777888888887765444433221      1235677889999


Q ss_pred             HHcCcHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHH
Q 024712          109 EAKGLWAEAEKAYSSLLEDNPLDP-----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYV  177 (263)
Q Consensus       109 ~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~  177 (263)
                      ...-++.+++.+-+..+.+-...+     .....++..+...+.++++++.|++++.....+      ..++..||.++-
T Consensus        94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~  173 (518)
T KOG1941|consen   94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA  173 (518)
T ss_pred             HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence            999999999999998888643332     466778888899999999999999999875443      246788999999


Q ss_pred             hcccHHHHHHHHHHHHhhCC----CCH------HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712          178 SLQMYKQAAFCYEELILSQP----TVP------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV  247 (263)
Q Consensus       178 ~~g~~~~A~~~~~~al~~~p----~~~------~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~  247 (263)
                      ...++++|.-+..++..+..    .+.      .+.+.++..+...|.   .-.|.++.+++.++.-..--++.+..+++
T Consensus       174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~---LgdA~e~C~Ea~klal~~Gdra~~arc~~  250 (518)
T KOG1941|consen  174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR---LGDAMECCEEAMKLALQHGDRALQARCLL  250 (518)
T ss_pred             HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            99999999999999887643    222      267788999999999   88899999888776432234667777777


Q ss_pred             Hhh-------chhhHHHHhhc
Q 024712          248 MFV-------CHSTTYERAEQ  261 (263)
Q Consensus       248 ~~~-------~~~~~~~~~~~  261 (263)
                      +.+       .--.+++|.||
T Consensus       251 ~~aDIyR~~gd~e~af~rYe~  271 (518)
T KOG1941|consen  251 CFADIYRSRGDLERAFRRYEQ  271 (518)
T ss_pred             HHHHHHHhcccHhHHHHHHHH
Confidence            766       11345666665

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.61  E-value=9.4e-06  Score=74.94  Aligned_cols=165  Identities=12%  Similarity=0.049  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH-----
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----  132 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----  132 (263)
                      ....+..+...|++++|...+..+....+.         ...+...++.++...|++++|...+++++...+...     
T Consensus       412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  491 (903)
T PRK04841        412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI  491 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence            345677778889999999999888765331         123445678888899999999999999988544322     


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--------
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--------  198 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------  198 (263)
                      .+...+|.++...|++++|...+++++......      ..++..+|.++...|++++|...+.+++.....        
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  571 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM  571 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence            355678889999999999999999998764321      235567899999999999999999999875221        


Q ss_pred             CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      ....+..+|.+++..|+   +++|...+.+++....
T Consensus       572 ~~~~~~~la~~~~~~G~---~~~A~~~~~~al~~~~  604 (903)
T PRK04841        572 HEFLLRIRAQLLWEWAR---LDEAEQCARKGLEVLS  604 (903)
T ss_pred             HHHHHHHHHHHHHHhcC---HHHHHHHHHHhHHhhh
Confidence            12345678999999999   9999999999987643

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=1.4e-07  Score=69.97  Aligned_cols=91  Identities=14%  Similarity=0.019  Sum_probs=58.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP  149 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  149 (263)
                      .|..++....|..|+..|.+++..+|..+..+.+.+.++++..+|+.+....+++++++|+....++.+|........++
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~   95 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD   95 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence            35555555666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHH
Q 024712          150 TAIEWLNKYLE  160 (263)
Q Consensus       150 ~A~~~~~~~l~  160 (263)
                      +|+..+.++..
T Consensus        96 eaI~~Lqra~s  106 (284)
T KOG4642|consen   96 EAIKVLQRAYS  106 (284)
T ss_pred             HHHHHHHHHHH
Confidence            66666666644

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=1.6e-05  Score=59.13  Aligned_cols=170  Identities=16%  Similarity=0.072  Sum_probs=114.6

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----Cc-HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-----ES-KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---  132 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-----~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---  132 (263)
                      +-.+.+.+-+..|--.++++.|-..|.++-+.+-     ++ ...+...+.+| +.++..+|+.++++++++..+-.   
T Consensus        32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~  110 (288)
T KOG1586|consen   32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFT  110 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHH
Confidence            3455566666666667777777777776665432     22 23334444444 44588899999998888644332   


Q ss_pred             ---HHHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH-
Q 024712          133 ---VLHKRRVAIAKAQ-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL-  201 (263)
Q Consensus       133 ---~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-  201 (263)
                         ..+..+|.+|... .++++|+.+|+.+-+....+      -..+...+..-...++|.+|+..|+++....-+++. 
T Consensus       111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL  190 (288)
T KOG1586|consen  111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL  190 (288)
T ss_pred             HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence               2344677777665 78889999999888765443      234556677777789999999999988876655543 


Q ss_pred             ------HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          202 ------YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       202 ------~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                            .++.-|.|++...+   .-.+...+++..+++|.
T Consensus       191 Kys~KdyflkAgLChl~~~D---~v~a~~ALeky~~~dP~  227 (288)
T KOG1586|consen  191 KYSAKDYFLKAGLCHLCKAD---EVNAQRALEKYQELDPA  227 (288)
T ss_pred             HhHHHHHHHHHHHHhHhccc---HHHHHHHHHHHHhcCCc
Confidence                  44556778888788   66677777777778886

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.58  E-value=2.2e-05  Score=63.55  Aligned_cols=169  Identities=14%  Similarity=-0.002  Sum_probs=127.3

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---cCcHHHHHHHHHH-HHhcCCCCHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ----FPESKRVGRLEGILLEA---KGLWAEAEKAYSS-LLEDNPLDPVL  134 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-~~~~~p~~~~~  134 (263)
                      ..++..++-.+|.+..+|+.-+++.+.+-..    .++.+.+...+|.++-+   .|+.++|+..+.. +....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4566677888899999999999998887776    34677888899999999   8999999999999 55566778899


Q ss_pred             HHHHHHHHHHc---------CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH--------hh--
Q 024712          135 HKRRVAIAKAQ---------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI--------LS--  195 (263)
Q Consensus       135 ~~~l~~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~--  195 (263)
                      +..+|.+|...         ...++|+.+|.++.+.+|+.- .=.+++.++...|.-.+...-..+..        +.  
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~  298 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS  298 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence            99999888642         247899999999999996543 33566667766665332221111111        11  


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          196 --QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       196 --~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                        .-.+......++.+....|+   +++|.+.+++++.+.|+
T Consensus       299 ~~~~~dYWd~ATl~Ea~vL~~d---~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  299 LEKMQDYWDVATLLEASVLAGD---YEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             ccccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcCCc
Confidence              12345566778899999999   99999999999999875

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.56  E-value=1.8e-07  Score=51.60  Aligned_cols=40  Identities=28%  Similarity=0.284  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024712          168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (263)
Q Consensus       168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  207 (263)
                      +|..+|..|...|++++|+.+|+++++.+|+++.++..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4445555555555555555555555555555555554444

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=6e-05  Score=57.30  Aligned_cols=143  Identities=20%  Similarity=0.153  Sum_probs=116.3

Q ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (263)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  176 (263)
                      +......-|.++...|++++|+.....     ..+.++...-..++.+..+.+-|.+.+++..+++.+  ..+..||..+
T Consensus       107 n~i~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~aw  179 (299)
T KOG3081|consen  107 NLIDLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAW  179 (299)
T ss_pred             hHHHHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHH
Confidence            334556667889999999999887766     344566666678888999999999999999887644  3445566655


Q ss_pred             Hh----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          177 VS----LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       177 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      ..    .+.+.+|.-+|++.-...|..+......+.|...+|+   +++|...++.++..+++ ++..+.+++.|...
T Consensus       180 v~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~---~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~  253 (299)
T KOG3081|consen  180 VKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR---YEEAESLLEEALDKDAK-DPETLANLIVLALH  253 (299)
T ss_pred             HHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC---HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHH
Confidence            44    3578999999999998888889999999999999999   99999999999999986 88888888888654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.53  E-value=3.3e-07  Score=50.59  Aligned_cols=42  Identities=24%  Similarity=0.226  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  174 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~  174 (263)
                      .++..+|..+...|++++|+..|+++++.+|+++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            345556666666666666666666666666666666665553

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=3e-05  Score=59.91  Aligned_cols=156  Identities=14%  Similarity=0.033  Sum_probs=117.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCC
Q 024712           69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGN  147 (263)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~  147 (263)
                      ..+......|++.+|...|..++...|.+..+...++.++...|+.+.|...+...-....... ........++.....
T Consensus       139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~  218 (304)
T COG3118         139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA  218 (304)
T ss_pred             HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence            3456678899999999999999999999999999999999999999999887766443322221 111122234444444


Q ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 024712          148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TVPLYHLAYADVLYTLGGVDNILLAKKY  225 (263)
Q Consensus       148 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~~~~A~~~  225 (263)
                      ..+ ...+++.+..+|++..+.+.+|..+...|+.+.|.+.+-..++.+-  .+..+...+-.++...|.   -+.+...
T Consensus       219 ~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~---~Dp~~~~  294 (304)
T COG3118         219 TPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP---ADPLVLA  294 (304)
T ss_pred             CCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC---CCHHHHH
Confidence            443 3456777788999999999999999999999999999998887764  446677788888888885   4445554


Q ss_pred             HHH
Q 024712          226 YAS  228 (263)
Q Consensus       226 ~~~  228 (263)
                      |++
T Consensus       295 ~RR  297 (304)
T COG3118         295 YRR  297 (304)
T ss_pred             HHH
Confidence            544

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=4e-07  Score=67.66  Aligned_cols=94  Identities=14%  Similarity=0.002  Sum_probs=86.1

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM  181 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  181 (263)
                      ...|..++....|..|+..|.+++..+|..+..+.+.+.++++..+++.+.....+++++.|+.....+.+|.+......
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~   93 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG   93 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence            34577788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 024712          182 YKQAAFCYEELILS  195 (263)
Q Consensus       182 ~~~A~~~~~~al~~  195 (263)
                      |++|+.+++++..+
T Consensus        94 ~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   94 YDEAIKVLQRAYSL  107 (284)
T ss_pred             ccHHHHHHHHHHHH
Confidence            99999999999654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.48  E-value=3.2e-05  Score=63.79  Aligned_cols=174  Identities=14%  Similarity=0.082  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHh-------cCC---------
Q 024712           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE-------DNP---------  129 (263)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------~~p---------  129 (263)
                      .-..+.....+..+.+.-++.-.++++.+|+.+.++..++.-..  .-..+|..+++++++       .+.         
T Consensus       170 ~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~  247 (539)
T PF04184_consen  170 PAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW  247 (539)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence            33345666788899999999999999999999999888775322  223455555555544       210         


Q ss_pred             -------CC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-CC
Q 024712          130 -------LD--PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILS-QP  197 (263)
Q Consensus       130 -------~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p  197 (263)
                             .+  ..+...++.+..+.|+.++|++.++..++.+|.  ...+..+|..++...+.|.++..++.+.=+. -|
T Consensus       248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp  327 (539)
T PF04184_consen  248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP  327 (539)
T ss_pred             hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence                   01  235678999999999999999999999998876  4568899999999999999999998886433 24


Q ss_pred             CCHHHHHHHHHHHHhc-CC------------CCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712          198 TVPLYHLAYADVLYTL-GG------------VDNILLAKKYYASTIDLTGGKNTKALF  242 (263)
Q Consensus       198 ~~~~~~~~la~~~~~~-g~------------~~~~~~A~~~~~~al~~~~~~~~~~~~  242 (263)
                      ......+.-|-+-.+. ++            ...-..|.+...+|++.||. -+..+.
T Consensus       328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH-Vp~YLL  384 (539)
T PF04184_consen  328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH-VPKYLL  384 (539)
T ss_pred             chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC-Cchhhh
Confidence            5555554444333221 22            11124577899999999996 444433

The molecular function of this protein is uncertain.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.46  E-value=8.2e-05  Score=63.18  Aligned_cols=174  Identities=14%  Similarity=0.084  Sum_probs=144.0

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CC-----CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC--
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ-FP-----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD--  131 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--  131 (263)
                      +|.+...|.....  +..|+..+-+..|..++.. +|     .-...|..+|..|...|+.+.|...|+++....-..  
T Consensus       345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~  422 (835)
T KOG2047|consen  345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE  422 (835)
T ss_pred             CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence            6666666665544  4468888889999888874 45     234678899999999999999999999999865322  


Q ss_pred             --HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------------------CHHHHHHHHHHHHhcccHHHHHHHHHH
Q 024712          132 --PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------------------DHDAWRELAEIYVSLQMYKQAAFCYEE  191 (263)
Q Consensus       132 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~  191 (263)
                        ..+|..-|..-....+++.|+.+++++......                  +..+|..++......|-++....+|++
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr  502 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR  502 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence              358888888888899999999999998754221                  256788999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcch
Q 024712          192 LILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT  238 (263)
Q Consensus       192 al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~  238 (263)
                      .+.+.--.|....+.|..+....-   +++|.+.|++.+.+.+-+.+
T Consensus       503 iidLriaTPqii~NyAmfLEeh~y---feesFk~YErgI~LFk~p~v  546 (835)
T KOG2047|consen  503 IIDLRIATPQIIINYAMFLEEHKY---FEESFKAYERGISLFKWPNV  546 (835)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhHH---HHHHHHHHHcCCccCCCccH
Confidence            999999999999999999999998   99999999999999765343

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.43  E-value=3.1e-06  Score=69.28  Aligned_cols=147  Identities=14%  Similarity=0.052  Sum_probs=119.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHH-HhcCCC--------CHHHHHHHH
Q 024712           69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSL-LEDNPL--------DPVLHKRRV  139 (263)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~p~--------~~~~~~~l~  139 (263)
                      .....++...+...+..-.+.+.....+++......+..++..|++.+|.+.+... +...|.        ....|+++|
T Consensus       211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG  290 (696)
T KOG2471|consen  211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG  290 (696)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence            34455566777777877777777777788999999999999999999999877654 223333        223578999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHh---------c---------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712          140 AIAKAQGNFPTAIEWLNKYLET---------F---------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~---------~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                      .+++..|.+.-+..+|.++++.         .         ..+-.+.++.|..|...|+.-.|.+||.++....-.+|.
T Consensus       291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr  370 (696)
T KOG2471|consen  291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR  370 (696)
T ss_pred             eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence            9999999999999999999961         1         123567899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCC
Q 024712          202 YHLAYADVLYTLGG  215 (263)
Q Consensus       202 ~~~~la~~~~~~g~  215 (263)
                      .|.++|+|.....+
T Consensus       371 lWLRlAEcCima~~  384 (696)
T KOG2471|consen  371 LWLRLAECCIMALQ  384 (696)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999886543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.42  E-value=6.4e-07  Score=73.06  Aligned_cols=111  Identities=20%  Similarity=0.067  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 024712           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ  145 (263)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  145 (263)
                      ..-..+..++..++++.|+..+.++++++|+.+..+-..+..+...+++..|+.-+.++++.+|....+++..|...+..
T Consensus         6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l   85 (476)
T KOG0376|consen    6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL   85 (476)
T ss_pred             hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence            34445666677777888888888888888877777777777777778888888888888888877777777777777888


Q ss_pred             CChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712          146 GNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (263)
Q Consensus       146 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  176 (263)
                      +.+.+|...|+++....|+++.+...+-.|-
T Consensus        86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            8888888888888888888777766665554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.40  E-value=0.00019  Score=57.64  Aligned_cols=174  Identities=14%  Similarity=0.032  Sum_probs=124.4

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH--HHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI--LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~--~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  140 (263)
                      .+.+...-++..+-.|+++.|.+-|+.++. +|. ....-..|.  .-.+.|..+.|..+-+++....|.-+.++...-.
T Consensus       119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPE-tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe  196 (531)
T COG3898         119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPE-TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE  196 (531)
T ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChH-HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence            344555556677778999999999988875 332 112222232  3346799999999999999999998888888888


Q ss_pred             HHHHcCChhHHHHHHHHHHHhc---CCCHH-----HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712          141 IAKAQGNFPTAIEWLNKYLETF---MADHD-----AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (263)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~---p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (263)
                      ..+..|+++.|++..+...+..   ++-.+     .+...+... ..-+...|...-.++.++.|+....-..-+..++.
T Consensus       197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~  275 (531)
T COG3898         197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFR  275 (531)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence            8889999999999988765432   22211     111222222 23457788888888899999888888888889999


Q ss_pred             cCCCCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712          213 LGGVDNILLAKKYYASTIDLTGGKNTKALF  242 (263)
Q Consensus       213 ~g~~~~~~~A~~~~~~al~~~~~~~~~~~~  242 (263)
                      .|+   ..++-..++.+.+..|.+++...|
T Consensus       276 d~~---~rKg~~ilE~aWK~ePHP~ia~lY  302 (531)
T COG3898         276 DGN---LRKGSKILETAWKAEPHPDIALLY  302 (531)
T ss_pred             ccc---hhhhhhHHHHHHhcCCChHHHHHH
Confidence            998   888989999998888875544433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.39  E-value=3.9e-07  Score=47.00  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=14.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhcccHHHH
Q 024712          155 LNKYLETFMADHDAWRELAEIYVSLQMYKQA  185 (263)
Q Consensus       155 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A  185 (263)
                      |+++++++|+++.+|+.+|.+|...|++++|
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            3444444444444444444444444444444

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.38  E-value=7.5e-07  Score=72.70  Aligned_cols=112  Identities=16%  Similarity=0.068  Sum_probs=103.5

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccH
Q 024712          103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY  182 (263)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  182 (263)
                      ..+...+..+.|+.|+..|.++++++|+....+.+.+..+.+.+++..|+..+.++++.+|....+++..|......+++
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            45667778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712          183 KQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (263)
Q Consensus       183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (263)
                      .+|...|+....+.|+++.+...+..|-....
T Consensus        89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs  120 (476)
T KOG0376|consen   89 KKALLDLEKVKKLAPNDPDATRKIDECNKIVS  120 (476)
T ss_pred             HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999888887765433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.35  E-value=2.4e-05  Score=68.41  Aligned_cols=123  Identities=13%  Similarity=0.011  Sum_probs=101.4

Q ss_pred             HHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHH
Q 024712          109 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC  188 (263)
Q Consensus       109 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~  188 (263)
                      ...+++.+|.....+.+...|+.+.+...-|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..+
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            34589999999999999999999999999999999999999999888888778888888899999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          189 YEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       189 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      |++++..+|+ ......+=.+|.+.+.   |.+=.+.--+..+..|.
T Consensus       100 Ye~~~~~~P~-eell~~lFmayvR~~~---yk~qQkaa~~LyK~~pk  142 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAYVREKS---YKKQQKAALQLYKNFPK  142 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCc
Confidence            9999999999 6666666667777666   54333333333334454

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=0.00017  Score=54.23  Aligned_cols=167  Identities=17%  Similarity=0.200  Sum_probs=115.5

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----CCCC
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLD  131 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~  131 (263)
                      ....|+.-+..+...+++++|...+.++.+-+.++      +..+-..+........+.++..+++++...     .|+.
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence            45678888888888899999999999998655433      234445566667778899999999999875     2443


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHh----hC--CCC
Q 024712          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELIL----SQ--PTV  199 (263)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~--p~~  199 (263)
                      ...-...+.-....-++++|+++|++++.....+      .+.+...+.++.....|.+|-..+.+-..    ..  |+.
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~  189 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ  189 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence            3333344444556778999999999988765443      34456678888888999988877776432    22  222


Q ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          200 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       200 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      ...+...-.++....+   |..|...|+.+-++
T Consensus       190 ~k~~va~ilv~L~~~D---yv~aekc~r~~~qi  219 (308)
T KOG1585|consen  190 CKAYVAAILVYLYAHD---YVQAEKCYRDCSQI  219 (308)
T ss_pred             HHHHHHHHHHHhhHHH---HHHHHHHhcchhcC
Confidence            2333444445555568   99999999887666

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=2.4e-05  Score=61.42  Aligned_cols=125  Identities=19%  Similarity=0.061  Sum_probs=109.5

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-cCCC---HHHHHHHHHHHHhc
Q 024712          104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-FMAD---HDAWRELAEIYVSL  179 (263)
Q Consensus       104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~---~~~~~~la~~~~~~  179 (263)
                      .+.+....|++.+|...+++++...|.+.-++..--..++..|+.......+++.+.. +|+-   ..+.-.++..+...
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            4556677899999999999999999999999888889999999999999999999876 5554   34445677788899


Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712          180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  231 (263)
Q Consensus       180 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~  231 (263)
                      |-|++|.+...++++++|.+..+...++.++...|+   ++++.+++.+.-.
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r---~Keg~eFM~~ted  237 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR---HKEGKEFMYKTED  237 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch---hhhHHHHHHhccc
Confidence            999999999999999999999999999999999999   9999999887643

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.26  E-value=2.1e-06  Score=44.43  Aligned_cols=32  Identities=25%  Similarity=0.455  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712          167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (263)
Q Consensus       167 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  198 (263)
                      .+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555666666666666666666666666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.26  E-value=1.2e-06  Score=45.18  Aligned_cols=33  Identities=21%  Similarity=0.224  Sum_probs=31.1

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 024712          188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK  223 (263)
Q Consensus       188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~  223 (263)
                      +|+++++++|+++.++.++|.+|...|+   +++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~---~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGD---YEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcC---HHhhc
Confidence            4789999999999999999999999999   99886

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.25  E-value=3.4e-06  Score=43.55  Aligned_cols=32  Identities=28%  Similarity=0.536  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712          167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (263)
Q Consensus       167 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  198 (263)
                      .+|+.+|.+++..|++++|+.+|++++.++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555666666666666666666666666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=2.2e-05  Score=58.95  Aligned_cols=102  Identities=17%  Similarity=0.144  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--------CCCCH----------HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 024712           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLDP----------VLHKRRVAIAKAQGNFPTAIEWLNKYL  159 (263)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~l  159 (263)
                      ..++...|+-++..|+|.+|...|+.++..        .|..+          ..+.++++|+...|++-++++.....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            345667788889999999999988888642        34432          244555666666666666666666666


Q ss_pred             HhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712          160 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  199 (263)
Q Consensus       160 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  199 (263)
                      ..+|.+..+++..|.+....-+..+|...|.+++.++|.-
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            6666666666666666666556666666666666666544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.24  E-value=3.4e-05  Score=65.41  Aligned_cols=119  Identities=18%  Similarity=0.092  Sum_probs=97.3

Q ss_pred             cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChhHHH
Q 024712           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPTAI  152 (263)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~  152 (263)
                      ..+.+.|.+++......+|+.+-..+..|.++...|+.++|++.+++++.....-    ...+..++.++..+++|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            4567889999999999999999999999999999999999999999988533222    246788999999999999999


Q ss_pred             HHHHHHHHhcCCCHH-HHHHHHHHHHhcccH-------HHHHHHHHHHHhh
Q 024712          153 EWLNKYLETFMADHD-AWRELAEIYVSLQMY-------KQAAFCYEELILS  195 (263)
Q Consensus       153 ~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~-------~~A~~~~~~al~~  195 (263)
                      .++.+..+.+.-+.. ..+..|.++...|+.       ++|..++.++-..
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            999999986554433 345678888888988       8888888877544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=2.4e-05  Score=58.69  Aligned_cols=100  Identities=9%  Similarity=-0.015  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHh--------cCCCH----------HHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMADH----------DAWRELAEIYVSLQMYKQAAFCYEELIL  194 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~  194 (263)
                      .++..-|+-++..|++.+|...|..++..        .|.++          ..+.+.+.|+...|+|-++++.....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            46778899999999999999999988743        35543          3567889999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          195 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       195 ~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .+|.+..+++..|.+....=+   ..+|...|.++++++|.
T Consensus       259 ~~~~nvKA~frRakAhaa~Wn---~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAAVWN---EAEAKADLQKVLELDPS  296 (329)
T ss_pred             cCCchHHHHHHHHHHHHhhcC---HHHHHHHHHHHHhcChh
Confidence            999999999999999999988   99999999999999996

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.21  E-value=0.00025  Score=60.31  Aligned_cols=153  Identities=18%  Similarity=0.113  Sum_probs=115.1

Q ss_pred             cCChHHHHHHHHHHHHhCC-CcHHHHHH-HHH----H-H--H--HcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 024712           77 CQCLDVAKDCIKVLQKQFP-ESKRVGRL-EGI----L-L--E--AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ  145 (263)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~-~a~----~-~--~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  145 (263)
                      .||-+.+++.+..+.+... ..+.+-.. ++.    . +  .  .....+.|.+++.......|+..-.....|.++...
T Consensus       201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~  280 (468)
T PF10300_consen  201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK  280 (468)
T ss_pred             CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            5899999999998877322 22222111 111    1 1  1  234678899999999999999998899999999999


Q ss_pred             CChhHHHHHHHHHHHhcCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCCCcH-
Q 024712          146 GNFPTAIEWLNKYLETFMA----DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL-YHLAYADVLYTLGGVDNI-  219 (263)
Q Consensus       146 g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~~-  219 (263)
                      |+.++|+..+++++.....    ..-.++.+|.++..+++|++|..++.+..+.+.-... ..+..|-|+...|+   . 
T Consensus       281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~---~~  357 (468)
T PF10300_consen  281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR---EE  357 (468)
T ss_pred             cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc---ch
Confidence            9999999999998843222    1345778999999999999999999999987766543 45667889999998   6 


Q ss_pred             ------HHHHHHHHHhhcc
Q 024712          220 ------LLAKKYYASTIDL  232 (263)
Q Consensus       220 ------~~A~~~~~~al~~  232 (263)
                            ++|...|.++-.+
T Consensus       358 ~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  358 EAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             hhhhhHHHHHHHHHHHHHH
Confidence                  8888888887554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.20  E-value=0.00014  Score=51.66  Aligned_cols=110  Identities=17%  Similarity=0.026  Sum_probs=65.7

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH-HHHHHHHHHhcCCCHHHHHHHHHHHHhcccHH
Q 024712          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA-IEWLNKYLETFMADHDAWRELAEIYVSLQMYK  183 (263)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~  183 (263)
                      |......++.+.++..+++++.+-..+.-.-..       ...|-.. ...++..      ...+...++..+...|+++
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~   79 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------YLDALERLAEALLEAGDYE   79 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHH
Confidence            444556677788888888888764322110000       0111111 1111111      1245566777778888888


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712          184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (263)
Q Consensus       184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al  230 (263)
                      +|+..+++++..+|.+-.++..+..++...|+   ..+|+..|.++.
T Consensus        80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~---~~~A~~~Y~~~~  123 (146)
T PF03704_consen   80 EALRLLQRALALDPYDEEAYRLLMRALAAQGR---RAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC---HHHHHHHHHHHH
Confidence            88888888888888888888888888888888   888888777764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.17  E-value=1.7e-05  Score=65.05  Aligned_cols=146  Identities=13%  Similarity=0.101  Sum_probs=117.5

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH-HHhcCC--------CHHHHHHHH
Q 024712          103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY-LETFMA--------DHDAWRELA  173 (263)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-l~~~p~--------~~~~~~~la  173 (263)
                      .....+.++.+...+..-.+.++....+.+.+....+..++..|++.+|.+.+... +...|.        .-.+|.++|
T Consensus       211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG  290 (696)
T KOG2471|consen  211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG  290 (696)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence            34455677777777887778888887888888899999999999999999887653 233333        234578999


Q ss_pred             HHHHhcccHHHHHHHHHHHHh-h--------CC---------CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          174 EIYVSLQMYKQAAFCYEELIL-S--------QP---------TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       174 ~~~~~~g~~~~A~~~~~~al~-~--------~p---------~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      -+++..|.|.-++.+|.+++. .        .|         ....+.++.|..|...|+   +-.|.+.|.++++....
T Consensus       291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr---Pl~AfqCf~~av~vfh~  367 (696)
T KOG2471|consen  291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR---PLLAFQCFQKAVHVFHR  367 (696)
T ss_pred             eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC---cHHHHHHHHHHHHHHhc
Confidence            999999999999999999995 1        11         234688999999999999   99999999999998774


Q ss_pred             cchhHHHhHHHHHhhch
Q 024712          236 KNTKALFGICLVMFVCH  252 (263)
Q Consensus       236 ~~~~~~~~l~~~~~~~~  252 (263)
                       +++.|..++.||.-.+
T Consensus       368 -nPrlWLRlAEcCima~  383 (696)
T KOG2471|consen  368 -NPRLWLRLAECCIMAL  383 (696)
T ss_pred             -CcHHHHHHHHHHHHHh
Confidence             8999999999976633

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.13  E-value=0.00026  Score=58.64  Aligned_cols=165  Identities=15%  Similarity=0.132  Sum_probs=116.8

Q ss_pred             HHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------------
Q 024712           28 LCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------------   95 (263)
Q Consensus        28 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------------   95 (263)
                      ...||++   ++..-++.+...+..       +|+..++|.-++.-  ......+|.++++++++...            
T Consensus       176 q~AWRER---np~aRIkaA~eALei-------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~  243 (539)
T PF04184_consen  176 QKAWRER---NPQARIKAAKEALEI-------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHH  243 (539)
T ss_pred             HHHHhcC---CHHHHHHHHHHHHHh-------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcc
Confidence            3445554   466777777777766       77888877766642  12345667777777666211            


Q ss_pred             ---------Cc----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 024712           96 ---------ES----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLE  160 (263)
Q Consensus        96 ---------~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  160 (263)
                               .+    ..+...+|.+..+.|+.++|++.++.+++..|.  +..++.++..++...+.+.++...+.+.=+
T Consensus       244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence                     01    234567899999999999999999999988775  456899999999999999999999988643


Q ss_pred             h-cCCCHHHHHHHHHHHHh-ccc---------------HHHHHHHHHHHHhhCCCCHHHHH
Q 024712          161 T-FMADHDAWRELAEIYVS-LQM---------------YKQAAFCYEELILSQPTVPLYHL  204 (263)
Q Consensus       161 ~-~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~  204 (263)
                      + -|+++...+.-|.+..+ .++               -..|.+.+.+|++.+|..+..+.
T Consensus       324 i~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  324 ISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             ccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            3 36666666665554433 111               23477889999999998876544

The molecular function of this protein is uncertain.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=0.0005  Score=52.33  Aligned_cols=170  Identities=15%  Similarity=0.094  Sum_probs=129.9

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh-HH
Q 024712           74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP-TA  151 (263)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~A  151 (263)
                      ..+...-+.|+.+...++..+|.+-.+|...-.++..++ +..+-++++.++++.+|.+..+|...-.+....|++. .-
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence            345567788999999999999988888877777766654 6777889999999999999999988888888888887 77


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-cCCC--CcHHHHHHHHHH
Q 024712          152 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LGGV--DNILLAKKYYAS  228 (263)
Q Consensus       152 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~--~~~~~A~~~~~~  228 (263)
                      ++..+.++..+..+-.+|...-.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... .|-.  ...+.-+.+..+
T Consensus       133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~  212 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD  212 (318)
T ss_pred             HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH
Confidence            8888999999988888998888888888889999999999998887766666553222222 2221  124555677777


Q ss_pred             hhccCCCcchhHHHhH
Q 024712          229 TIDLTGGKNTKALFGI  244 (263)
Q Consensus       229 al~~~~~~~~~~~~~l  244 (263)
                      .+.+.|+ +..+|..|
T Consensus       213 ~I~~vP~-NeSaWnYL  227 (318)
T KOG0530|consen  213 KILLVPN-NESAWNYL  227 (318)
T ss_pred             HHHhCCC-CccHHHHH
Confidence            7888886 55555433

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=98.11  E-value=0.00062  Score=55.02  Aligned_cols=146  Identities=11%  Similarity=0.003  Sum_probs=108.1

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCc------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 024712           85 DCIKVLQKQFPESKRVGRLEGILLEAKGL------------WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI  152 (263)
Q Consensus        85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  152 (263)
                      .-+++.+..+|.+...|..+.......-.            .+.-+.+|++|++.+|++...+..+.....+..+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45677788888888888777665443321            456778899999999999888888888888888888888


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHh---cccHHHHHHHHHHHHhhCC----C--------------CHHHHHHHHHHHH
Q 024712          153 EWLNKYLETFMADHDAWRELAEIYVS---LQMYKQAAFCYEELILSQP----T--------------VPLYHLAYADVLY  211 (263)
Q Consensus       153 ~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p----~--------------~~~~~~~la~~~~  211 (263)
                      ..+++++..+|++...|...-.....   .-.+......|.+++..-.    .              -..++.+++....
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~  165 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR  165 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999888765544433   2346677777777764311    0              0125667777788


Q ss_pred             hcCCCCcHHHHHHHHHHhhccC
Q 024712          212 TLGGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       212 ~~g~~~~~~~A~~~~~~al~~~  233 (263)
                      ..|-   .+.|+..++-.+++|
T Consensus       166 ~aG~---~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  166 QAGY---TERAVALWQALLEFN  184 (321)
T ss_pred             HCCc---hHHHHHHHHHHHHHH
Confidence            8899   999999999988874

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.06  E-value=0.00036  Score=49.50  Aligned_cols=113  Identities=15%  Similarity=0.099  Sum_probs=76.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 024712           69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW-AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN  147 (263)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  147 (263)
                      ..+......++...++..+.+++.......-.-...       ..| ......++...      ..+...++..+...|+
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~~------~~~~~~l~~~~~~~~~   77 (146)
T PF03704_consen   11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLRELY------LDALERLAEALLEAGD   77 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHHH------HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHHH------HHHHHHHHHHHHhccC
Confidence            345556678899999999999998764322100000       122 12222222222      3566778888889999


Q ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 024712          148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  194 (263)
Q Consensus       148 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  194 (263)
                      +++|+..+++++..+|.+..++..+..++...|+...|+..|+++..
T Consensus        78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999887753

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=5.3e-05  Score=59.32  Aligned_cols=101  Identities=21%  Similarity=0.178  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA  173 (263)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la  173 (263)
                      +..+..-|+-|+...+|..|+..|.+.+...-.++    ..|.+.+.+....|+|..|+....+++..+|.+..+++.=|
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            34555678889999999999999999998764443    46788888999999999999999999999999999999999


Q ss_pred             HHHHhcccHHHHHHHHHHHHhhCCC
Q 024712          174 EIYVSLQMYKQAAFCYEELILSQPT  198 (263)
Q Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p~  198 (263)
                      .|++.+.++..|..+++..+.++..
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            9999999988888888887766543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.04  E-value=0.00044  Score=60.66  Aligned_cols=151  Identities=15%  Similarity=0.144  Sum_probs=110.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 024712           69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF  148 (263)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  148 (263)
                      ..+......|.+++|..+|.+.-.        +-.+-..|...|.|++|.++.+.--.++  -...+++.+..+...++.
T Consensus       805 kvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di  874 (1416)
T KOG3617|consen  805 KVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDI  874 (1416)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccH
Confidence            356666777888888888876543        2356677888888888887655422222  235678888888889999


Q ss_pred             hHHHHHHHHH----------HHhcC----------CCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-------------
Q 024712          149 PTAIEWLNKY----------LETFM----------ADHDAWRELAEIYVSLQMYKQAAFCYEELILS-------------  195 (263)
Q Consensus       149 ~~A~~~~~~~----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------  195 (263)
                      +.|+++|+++          +..+|          .++..|.-.|......|+.+.|+.+|..+-..             
T Consensus       875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~  954 (1416)
T KOG3617|consen  875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKT  954 (1416)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCc
Confidence            9999999873          22233          34566777898899999999999999877432             


Q ss_pred             --------CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          196 --------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       196 --------~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                              ...+-.+.+.+|+.|...|+   ..+|+.+|.++-..
T Consensus       955 ~kAa~iA~esgd~AAcYhlaR~YEn~g~---v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  955 DKAARIAEESGDKAACYHLARMYENDGD---VVKAVKFFTRAQAF  996 (1416)
T ss_pred             hHHHHHHHhcccHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHH
Confidence                    23455688999999999999   99999999887543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.0035  Score=47.91  Aligned_cols=184  Identities=12%  Similarity=0.158  Sum_probs=142.3

Q ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCcHHHH
Q 024712           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDC-QCLDVAKDCIKVLQKQFPESKRVG  101 (263)
Q Consensus        23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~  101 (263)
                      ++..|+|.+...+.+.+ .++++-..++.-       +|.+.++|...-.++-.. .+..+-++.+..+++.+|.+-.+|
T Consensus        44 ~~m~YfRAI~~~~E~S~-RAl~LT~d~i~l-------NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvW  115 (318)
T KOG0530|consen   44 DVMDYFRAIIAKNEKSP-RALQLTEDAIRL-------NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVW  115 (318)
T ss_pred             HHHHHHHHHHhccccCH-HHHHHHHHHHHh-------CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHH
Confidence            56778887777765544 445554444433       777777777655554443 567888999999999999999999


Q ss_pred             HHHHHHHHHcCcHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--
Q 024712          102 RLEGILLEAKGLWA-EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS--  178 (263)
Q Consensus       102 ~~~a~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--  178 (263)
                      ...-.+....|+.. .-+++.+.++..+..+..+|...-.+...-+.++.-+.+....++.+-.+-.+|...-.+...  
T Consensus       116 HHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~  195 (318)
T KOG0530|consen  116 HHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTK  195 (318)
T ss_pred             HHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEecc
Confidence            99999999999887 788999999999999999999999999999999999999999999887777777542211111  


Q ss_pred             ----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-cC
Q 024712          179 ----LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LG  214 (263)
Q Consensus       179 ----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g  214 (263)
                          .-..+.-+.+..+.+...|++..+|..|.-++.. .|
T Consensus       196 ~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~g  236 (318)
T KOG0530|consen  196 GVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSG  236 (318)
T ss_pred             CCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence                1234455677888899999999999999888875 55

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.00  E-value=2e-05  Score=40.52  Aligned_cols=30  Identities=27%  Similarity=0.165  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMA  164 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  164 (263)
                      +..+|.+++..|++++|+..++++++++|+
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            344444444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.99  E-value=1.6e-05  Score=40.94  Aligned_cols=31  Identities=16%  Similarity=0.082  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA  164 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  164 (263)
                      +|..+|.++..+|++++|+..|+++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4455555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.97  E-value=0.0011  Score=48.38  Aligned_cols=115  Identities=11%  Similarity=-0.008  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHH
Q 024712           82 VAKDCIKVLQKQFPESKR---VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWL  155 (263)
Q Consensus        82 ~A~~~~~~~~~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~  155 (263)
                      +.....++....+|.+..   +...++..+...+++++|+..++.++....+.   .-+-.+++.+...+|.+++|+..+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            344444444444443322   22344555555666666666666555432211   123445556666666666665555


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712          156 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       156 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  197 (263)
                      .......- .+......|.++...|+-++|+..|++++...+
T Consensus       150 ~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~  190 (207)
T COG2976         150 DTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDA  190 (207)
T ss_pred             hccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence            43322110 011223345566666666666666666655543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.95  E-value=0.0023  Score=46.64  Aligned_cols=116  Identities=13%  Similarity=0.053  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcccHHHHHHHH
Q 024712          116 EAEKAYSSLLEDNPLDPV---LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCY  189 (263)
Q Consensus       116 ~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~  189 (263)
                      +......+....+|.+..   +...++..+...|++++|+..++.++....+.   .-+-..||.+...+|.+++|+..+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            445555666666655543   44567888999999999999999998643332   234578999999999999999987


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          190 EELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       190 ~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ...-.. .-.+......|+++...|+   .++|+..|+++++..++
T Consensus       150 ~t~~~~-~w~~~~~elrGDill~kg~---k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         150 DTIKEE-SWAAIVAELRGDILLAKGD---KQEARAAYEKALESDAS  191 (207)
T ss_pred             hccccc-cHHHHHHHHhhhHHHHcCc---hHHHHHHHHHHHHccCC
Confidence            654321 1123346678999999999   99999999999998754

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=0.00012  Score=57.35  Aligned_cols=100  Identities=16%  Similarity=0.062  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD  208 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  208 (263)
                      .-+..-|+-|++..+|..|+..|.+.|...-.+    ...|.+.|.+.+..|+|..|+.-+.+++.++|.+..++++=|.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak  161 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK  161 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence            345667899999999999999999999875555    4467889999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          209 VLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       209 ~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      |++.+..   +..|..+.+..++++..
T Consensus       162 c~~eLe~---~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  162 CLLELER---FAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHH---HHHHHHHHhhhhhhhHH
Confidence            9999999   99999999999888653

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=0.0029  Score=47.85  Aligned_cols=162  Identities=16%  Similarity=0.089  Sum_probs=115.8

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC-----
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-----PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-----  131 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----  131 (263)
                      .-...+++.+...-....+.++..+++++...+     |+.+..-...+--.....+.++|+++|++++..-..+     
T Consensus        69 hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~m  148 (308)
T KOG1585|consen   69 HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQM  148 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHH
Confidence            345678888999989999999999999999865     4444444555556667789999999999998753322     


Q ss_pred             -HHHHHHHHHHHHHcCChhHHHHHHHHHHHh------cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC----CCCH
Q 024712          132 -PVLHKRRVAIAKAQGNFPTAIEWLNKYLET------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ----PTVP  200 (263)
Q Consensus       132 -~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~  200 (263)
                       .+.+...+.++.+..++.+|-..+.+-...      .|+....+.....++...++|..|..+++..-++.    |.+.
T Consensus       149 a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~  228 (308)
T KOG1585|consen  149 AFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS  228 (308)
T ss_pred             HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH
Confidence             245566788888999999988877764332      34444556666677777889999999999987654    4445


Q ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 024712          201 LYHLAYADVLYTLGGVDNILLAKKYYA  227 (263)
Q Consensus       201 ~~~~~la~~~~~~g~~~~~~~A~~~~~  227 (263)
                      .+..+|-..| ..|+   .++..+.+.
T Consensus       229 r~lenLL~ay-d~gD---~E~~~kvl~  251 (308)
T KOG1585|consen  229 RSLENLLTAY-DEGD---IEEIKKVLS  251 (308)
T ss_pred             HHHHHHHHHh-ccCC---HHHHHHHHc
Confidence            5666665444 5677   666555443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.83  E-value=0.0035  Score=51.34  Aligned_cols=170  Identities=16%  Similarity=0.036  Sum_probs=104.5

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---H
Q 024712           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---V  133 (263)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~  133 (263)
                      .+....+...+..+...|.++.|...+.++...++    ..+.+.+..+.++...|+..+|+..++..+.......   .
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence            35566777788888888888888888888777552    2466777778888888888888888877776211111   0


Q ss_pred             HHHHHHHHHHH--cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc------ccHHHHHHHHHHHHhhCCCCHHHHHH
Q 024712          134 LHKRRVAIAKA--QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL------QMYKQAAFCYEELILSQPTVPLYHLA  205 (263)
Q Consensus       134 ~~~~l~~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~  205 (263)
                      ....+......  .............     .....++..+|......      +..++++..|.++++.+|....++..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~  297 (352)
T PF02259_consen  223 SNAELKSGLLESLEVISSTNLDKESK-----ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS  297 (352)
T ss_pred             cHHHHhhccccccccccccchhhhhH-----HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence            00001000000  0000000000000     01134566677777666      78888888888888888888888888


Q ss_pred             HHHHHHhcCCC--------------CcHHHHHHHHHHhhccCCC
Q 024712          206 YADVLYTLGGV--------------DNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       206 la~~~~~~g~~--------------~~~~~A~~~~~~al~~~~~  235 (263)
                      +|..+...-..              +-...|+..|-+++...+.
T Consensus       298 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  298 WALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            88777654220              0135689999999998875

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.81  E-value=1.1e-05  Score=63.22  Aligned_cols=124  Identities=15%  Similarity=0.056  Sum_probs=94.3

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccH
Q 024712          103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY  182 (263)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  182 (263)
                      ..+.-.+..|.+++|++.+..++.++|.....+...+.++..++++..|+.-+..+++++|+...-+-..|.....+|++
T Consensus       119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW  198 (377)
T ss_pred             HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence            34555667788999999999999999998888889999999999999999999999999999888888888888889999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712          183 KQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (263)
Q Consensus       183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al  230 (263)
                      .+|...+..+.+++-+. .+-..+-.+.-..+.   .++-...+++..
T Consensus       199 e~aa~dl~~a~kld~dE-~~~a~lKeV~p~a~k---i~e~~~k~er~~  242 (377)
T KOG1308|consen  199 EEAAHDLALACKLDYDE-ANSATLKEVFPNAGK---IEEHRRKYERAR  242 (377)
T ss_pred             HHHHHHHHHHHhccccH-HHHHHHHHhccchhh---hhhchhHHHHHH
Confidence            99999999888876432 222333344444444   444444444443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.79  E-value=4.9e-05  Score=39.07  Aligned_cols=30  Identities=30%  Similarity=0.487  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712          168 AWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p  197 (263)
                      +|+.+|.++...|++++|+.+|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            445555555555555555555555555554

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.0033  Score=48.95  Aligned_cols=132  Identities=17%  Similarity=0.042  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH-HH--H
Q 024712           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE-LA--E  174 (263)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la--~  174 (263)
                      .......+.-....|++.+|...+..++...|.+..+...++.++...|+.+.|...+...=.....+  .+.. .+  .
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~--~~~~l~a~i~  211 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK--AAHGLQAQIE  211 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--HHHHHHHHHH
Confidence            34455667778888999999999999999999999999999999999999998887776532222111  1111 11  2


Q ss_pred             HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ++.......+ +..+++.+..+|++..+.+.+|..+...|+   .+.|.+.+-..+..+-+
T Consensus       212 ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         212 LLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRG  268 (304)
T ss_pred             HHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccc
Confidence            2222222222 234566678899999999999999999999   99999999988887654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.79  E-value=0.0082  Score=45.17  Aligned_cols=140  Identities=12%  Similarity=0.047  Sum_probs=106.1

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHc-CcHHHHHHHHHHHHhcCCCC---
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR------VGRLEGILLEAK-GLWAEAEKAYSSLLEDNPLD---  131 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~---  131 (263)
                      +....|...+.+| +.++..+|..+++++++++.+-.+      .+..+|.+|... .++++|+..|+.+-+.....   
T Consensus        72 Daat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~  150 (288)
T KOG1586|consen   72 DAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV  150 (288)
T ss_pred             hHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence            4566666666554 667999999999999998864333      344788888876 89999999999987743222   


Q ss_pred             ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712          132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                         -.++...+..-...++|.+|+..|+++....-++.       +.++.-|.|++...+.-.+...+++..+++|.+..
T Consensus       151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d  230 (288)
T KOG1586|consen  151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD  230 (288)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence               13566667777788999999999999987665553       33456678888888888899999999999998755


Q ss_pred             H
Q 024712          202 Y  202 (263)
Q Consensus       202 ~  202 (263)
                      .
T Consensus       231 s  231 (288)
T KOG1586|consen  231 S  231 (288)
T ss_pred             c
Confidence            3

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.78  E-value=0.001  Score=47.17  Aligned_cols=86  Identities=21%  Similarity=0.160  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  142 (263)
                      ....+..+....+..++.+.+..++..+....|..+.+...-|.++...|+|.+|+.+++.+....|..+.+--.++.|+
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            44555566667777888888888888888888888888888888888888888888888888888888887777788888


Q ss_pred             HHcCCh
Q 024712          143 KAQGNF  148 (263)
Q Consensus       143 ~~~g~~  148 (263)
                      +..|+.
T Consensus        89 ~~~~D~   94 (160)
T PF09613_consen   89 YALGDP   94 (160)
T ss_pred             HHcCCh
Confidence            877764

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.76  E-value=3.2e-05  Score=60.75  Aligned_cols=93  Identities=15%  Similarity=-0.039  Sum_probs=67.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP  149 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  149 (263)
                      .+.-++..|.+++|+..+..++.++|....++...+.++...++...|+.-+..+++++|+....+...+.....+|+++
T Consensus       120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e  199 (377)
T KOG1308|consen  120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE  199 (377)
T ss_pred             HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence            34455666777777777777777777777777777777777777777777777777777777766666677777777777


Q ss_pred             HHHHHHHHHHHhc
Q 024712          150 TAIEWLNKYLETF  162 (263)
Q Consensus       150 ~A~~~~~~~l~~~  162 (263)
                      +|...+..+++++
T Consensus       200 ~aa~dl~~a~kld  212 (377)
T KOG1308|consen  200 EAAHDLALACKLD  212 (377)
T ss_pred             HHHHHHHHHHhcc
Confidence            7777777777654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.74  E-value=0.00016  Score=60.87  Aligned_cols=99  Identities=15%  Similarity=0.073  Sum_probs=66.8

Q ss_pred             HHHcCcHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHH
Q 024712          108 LEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA  186 (263)
Q Consensus       108 ~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~  186 (263)
                      ....|+...|+.++..++...|.... ...+++.++.+.|..-.|-..+.+++.+....+-..+.+|..+..+.+.+.|+
T Consensus       617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~  696 (886)
T KOG4507|consen  617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL  696 (886)
T ss_pred             eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence            34456777777777777776665442 45567777777776667777777777777666666677777777777777777


Q ss_pred             HHHHHHHhhCCCCHHHHHHH
Q 024712          187 FCYEELILSQPTVPLYHLAY  206 (263)
Q Consensus       187 ~~~~~al~~~p~~~~~~~~l  206 (263)
                      +.++++++.+|+++.+...|
T Consensus       697 ~~~~~a~~~~~~~~~~~~~l  716 (886)
T KOG4507|consen  697 EAFRQALKLTTKCPECENSL  716 (886)
T ss_pred             HHHHHHHhcCCCChhhHHHH
Confidence            77777777777776654443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.70  E-value=0.0053  Score=43.58  Aligned_cols=80  Identities=19%  Similarity=-0.024  Sum_probs=43.8

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHH
Q 024712          104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK  183 (263)
Q Consensus       104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~  183 (263)
                      ...+-...++.+++..++..+--+.|..+..-..-|.++...|++.+|+..++.+....|..+.+--.++.|++.+|+.+
T Consensus        16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence            33344444555555555555555555555555555555555555555555555555555555555555555555555443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.69  E-value=0.00098  Score=42.83  Aligned_cols=75  Identities=21%  Similarity=0.096  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712          151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (263)
Q Consensus       151 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~~~~A~~~~~~  228 (263)
                      .+..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..+++.  ..+...+-.++-.+|.   -+.....|++
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~---~~plv~~~RR   83 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP---GDPLVSEYRR   83 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC---CChHHHHHHH
Confidence            3567788888899999999999999999999999999988888887755  5566666677777776   4444444444

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.68  E-value=0.0011  Score=54.91  Aligned_cols=94  Identities=13%  Similarity=0.101  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHH
Q 024712           81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN-FPTAIEWLNKYL  159 (263)
Q Consensus        81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l  159 (263)
                      ..-..+|+.++..++.++..|..........+.+.+-...|.+++..+|++++.|..-+.-.+..+. .+.|...+.+++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            3456778888999998898888888888887878888899999999999999999888887777765 888899999999


Q ss_pred             HhcCCCHHHHHHHHH
Q 024712          160 ETFMADHDAWRELAE  174 (263)
Q Consensus       160 ~~~p~~~~~~~~la~  174 (263)
                      +.+|+++..|...-.
T Consensus       168 R~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  168 RFNPDSPKLWKEYFR  182 (568)
T ss_pred             hcCCCChHHHHHHHH
Confidence            999999988865443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.68  E-value=0.0046  Score=50.74  Aligned_cols=157  Identities=15%  Similarity=0.051  Sum_probs=113.0

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--------------C------------
Q 024712           75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------------N------------  128 (263)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------~------------  128 (263)
                      ...+|.+.-+    ..+..+|-+...+..++.++..+|+.+.|.+++++++-.              +            
T Consensus        21 v~~~Dp~~l~----~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~   96 (360)
T PF04910_consen   21 VQSHDPNALI----NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRR   96 (360)
T ss_pred             HHccCHHHHH----HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcc
Confidence            3445554333    345778999999999999999999999988888888531              1            


Q ss_pred             CCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-CHHHHHH-HHHHHHhcccHHHHHHHHHHHHhhCC-----C
Q 024712          129 PLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-DHDAWRE-LAEIYVSLQMYKQAAFCYEELILSQP-----T  198 (263)
Q Consensus       129 p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p-----~  198 (263)
                      +.|.   .+.......+.+.|-+..|.++.+-.+.++|. |+-.... +=....+.++|+--+..++.......     .
T Consensus        97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~  176 (360)
T PF04910_consen   97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSL  176 (360)
T ss_pred             ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhh
Confidence            1122   25566778888999999999999999999999 7654444 44444567888888888877655211     1


Q ss_pred             CHHHHHHHHHHHHhcCCC------------CcHHHHHHHHHHhhccCCC
Q 024712          199 VPLYHLAYADVLYTLGGV------------DNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       199 ~~~~~~~la~~~~~~g~~------------~~~~~A~~~~~~al~~~~~  235 (263)
                      -|...+..+-+++..++.            .+.+.|...+.+|+...|.
T Consensus       177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            245677788888888881            0128999999999998774

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.66  E-value=0.024  Score=46.93  Aligned_cols=73  Identities=16%  Similarity=0.038  Sum_probs=60.0

Q ss_pred             HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC-cchhHHHhHHHHHhh
Q 024712          173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLVMFV  250 (263)
Q Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~-~~~~~~~~l~~~~~~  250 (263)
                      |..++.+|+|.++.-+-.-..++.| .+.++..+|.|++...+   |++|-.++...-. +.+ .+.....++++|.+.
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~---Y~eA~~~l~~LP~-n~~~~dskvqKAl~lCqKh  542 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR---YQEAWEYLQKLPP-NERMRDSKVQKALALCQKH  542 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh---HHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHh
Confidence            4556889999999999999999999 89999999999999999   9999999876432 333 456666788888654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.0098  Score=52.68  Aligned_cols=161  Identities=15%  Similarity=0.126  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHH----------HHhCC----------CcHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVL----------QKQFP----------ESKRVGRLEGILLEAKGLWAEAEKAYSS  123 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~----------~~~~p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~  123 (263)
                      -..|++.+..+-..+|.+.|+++|++.          +..+|          .++..|...|..+...|+.+.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            456777788777888999999888753          33444          3566777889999999999999999998


Q ss_pred             HHh---------------------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH------hcCCC-----------
Q 024712          124 LLE---------------------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE------TFMAD-----------  165 (263)
Q Consensus       124 ~~~---------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~------~~p~~-----------  165 (263)
                      +-.                     ....+..+.+.+|..|...|++.+|+..|-++-.      +...+           
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal 1017 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLAL 1017 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            844                     1344556778899999999999999998877543      22111           


Q ss_pred             ---HHHHHHHHHHHHhcc-cHHHHHHHHHHH------H-----------------hhCC-CCHHHHHHHHHHHHhcCCCC
Q 024712          166 ---HDAWRELAEIYVSLQ-MYKQAAFCYEEL------I-----------------LSQP-TVPLYHLAYADVLYTLGGVD  217 (263)
Q Consensus       166 ---~~~~~~la~~~~~~g-~~~~A~~~~~~a------l-----------------~~~p-~~~~~~~~la~~~~~~g~~~  217 (263)
                         +.-....|..|...| .++.|..+|.++      +                 .++| .+|.....-++.+....+  
T Consensus      1018 ~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q-- 1095 (1416)
T KOG3617|consen 1018 MSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ-- 1095 (1416)
T ss_pred             hcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH--
Confidence               011122233344443 455555544432      1                 2244 457777888888888888  


Q ss_pred             cHHHHHHHHH
Q 024712          218 NILLAKKYYA  227 (263)
Q Consensus       218 ~~~~A~~~~~  227 (263)
                       |++|...+-
T Consensus      1096 -yekAV~lL~ 1104 (1416)
T KOG3617|consen 1096 -YEKAVNLLC 1104 (1416)
T ss_pred             -HHHHHHHHH
Confidence             998886543

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.62  E-value=0.014  Score=47.28  Aligned_cols=118  Identities=14%  Similarity=0.053  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCChhHHHHHHH
Q 024712           80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---QGNFPTAIEWLN  156 (263)
Q Consensus        80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~  156 (263)
                      .+.-+.+|+++++.+|++..++..+-.......+.++...-+++++..+|+++..|..+......   .-.++.....|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            45667899999999999999998888888888899999999999999999999988776665544   235778888888


Q ss_pred             HHHHhcCCC------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712          157 KYLETFMAD------------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       157 ~~l~~~p~~------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  197 (263)
                      +++..-...                  ..++..+.......|..+.|+..++-.++.+=
T Consensus       127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            877642110                  23445667777889999999999999998864

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.0021  Score=53.35  Aligned_cols=79  Identities=14%  Similarity=0.051  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL-WAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~  141 (263)
                      +...|........+.+.+.+--.+|.+++..+|+++.+|..-|.-.+..+. .+.|...+.+++..+|+++..|...-.+
T Consensus       104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM  183 (568)
T ss_pred             CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence            334444444444455557778888888888888888888877777666665 7778888888888888888776654443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.61  E-value=0.017  Score=48.74  Aligned_cols=150  Identities=17%  Similarity=0.101  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCc---HHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChhHHHHH
Q 024712           80 LDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGL---WAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEW  154 (263)
Q Consensus        80 ~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~  154 (263)
                      -+++..++++++..-. .+...++.++..-...-+   ++...+.+++++.....++ -++..+...-.+..-...|...
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i  388 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI  388 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence            5667777777776433 344445555554443333   7777888888887644443 3555666666666667788888


Q ss_pred             HHHHHHhcCCCHHHHHHHHHH-HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          155 LNKYLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       155 ~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      |.++-+..-....++..-|.+ |...++..-|...|+-.++..++.+.........+...|+   -..|...|++++..
T Consensus       389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd---d~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND---DNNARALFERVLTS  464 (656)
T ss_pred             HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc---chhHHHHHHHHHhc
Confidence            888876544433455444433 4557899999999999999999999988888888889998   88899999999876

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.60  E-value=0.0015  Score=43.11  Aligned_cols=103  Identities=17%  Similarity=0.092  Sum_probs=58.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKR---VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  146 (263)
                      ++..++..|++-+|+++++..+..++++..   +....|.++.....-           ..+|+ ....+.         
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~-----------ten~d-~k~~yL---------   60 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKK-----------TENPD-VKFRYL---------   60 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHh-----------ccCch-HHHHHH---------
Confidence            345566677777777777777776665442   333334443322110           11222 111111         


Q ss_pred             ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712          147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  195 (263)
                        -.+++++.++..+.|..+..++.+|.-+.....|+++..-.++++..
T Consensus        61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence              12566777777777777777777777766667777777777777654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.59  E-value=0.028  Score=45.71  Aligned_cols=132  Identities=11%  Similarity=-0.001  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH-HHHHHHHHH---
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIA---  142 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~---  142 (263)
                      +..+....-..|+.+.|+.+-+.+...-|.-+.++...-......|+|+.|+++.+......--... +-...+.++   
T Consensus       157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk  236 (531)
T COG3898         157 LRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK  236 (531)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence            3445555567799999999999999998988888777777777889999999888766553211111 111111111   


Q ss_pred             ---HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712          143 ---KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (263)
Q Consensus       143 ---~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  198 (263)
                         ...-+...|......++++.|+...+-..-+..++..|+..++-.+++.+.+..|+
T Consensus       237 A~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         237 AMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH  295 (531)
T ss_pred             HHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence               12245677778888888888888777777788888888888888888888777775

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.58  E-value=0.025  Score=45.10  Aligned_cols=162  Identities=13%  Similarity=-0.020  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCCCC-HHHHH
Q 024712           66 LYEQVSIAAMDC----QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLD-PVLHK  136 (263)
Q Consensus        66 ~~~~la~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~-~~~~~  136 (263)
                      ....++..+...    .+..+|...+..+.+  ...+...+.+|..+..    ..+..+|..+|+++....... ..+..
T Consensus        75 a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~  152 (292)
T COG0790          75 ALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMY  152 (292)
T ss_pred             HHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHH
Confidence            334445554432    457778888874433  4566777788888876    448888888888888764333 23366


Q ss_pred             HHHHHHHHcC-------ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHH
Q 024712          137 RRVAIAKAQG-------NFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLA  205 (263)
Q Consensus       137 ~l~~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~  205 (263)
                      .++.++..-.       +...|...|.++....  ++.+.+.+|.+|..    ..++.+|..+|.++-+...  ...+..
T Consensus       153 ~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~  228 (292)
T COG0790         153 RLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYN  228 (292)
T ss_pred             HHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHH
Confidence            6777766541       2336788888777664  67778888877755    3478889999988888776  777777


Q ss_pred             HHHHHHhcCCC------------CcHHHHHHHHHHhhccCC
Q 024712          206 YADVLYTLGGV------------DNILLAKKYYASTIDLTG  234 (263)
Q Consensus       206 la~~~~~~g~~------------~~~~~A~~~~~~al~~~~  234 (263)
                      ++ +++..|..            .+...|...+..+....+
T Consensus       229 ~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  268 (292)
T COG0790         229 LG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF  268 (292)
T ss_pred             HH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence            87 66666620            126677777777665544

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=0.032  Score=46.57  Aligned_cols=164  Identities=12%  Similarity=0.059  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC-------cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-CH-
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQ---FPE-------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-DP-  132 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~-  132 (263)
                      ..++.++.+-+-.|++.+|++-+..+.+.   .|.       .+.+...+|......+-++.|...|..+.++-.. +. 
T Consensus       324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~  403 (629)
T KOG2300|consen  324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ  403 (629)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence            34555677777789999999888777664   453       4566778888888899999999999999886433 22 


Q ss_pred             -HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC--
Q 024712          133 -VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--  199 (263)
Q Consensus       133 -~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--  199 (263)
                       .+..+++.+|...|+-+.--+.++.   +.|.+          ..+++..|...+.++++.+|.....+.++.....  
T Consensus       404 a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~  480 (629)
T KOG2300|consen  404 AFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL  480 (629)
T ss_pred             HHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence             3556789999998876544333332   34432          3466778888899999999999999999876321  


Q ss_pred             ----HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          200 ----PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       200 ----~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                          ......++.++.-.|+   ..++.+..+-++++..
T Consensus       481 ~rL~a~~LvLLs~v~lslgn---~~es~nmvrpamqlAk  516 (629)
T KOG2300|consen  481 NRLTACSLVLLSHVFLSLGN---TVESRNMVRPAMQLAK  516 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhcc---hHHHHhccchHHHHHh
Confidence                2245678899999999   8888887777776543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.54  E-value=0.00025  Score=35.99  Aligned_cols=31  Identities=32%  Similarity=0.418  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712          168 AWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (263)
Q Consensus       168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  198 (263)
                      +++.+|.++...|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3445555555555555555555555555554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.50  E-value=0.00034  Score=35.85  Aligned_cols=30  Identities=23%  Similarity=0.235  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFM  163 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  163 (263)
                      ++..+|.++...|++++|+..|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344555555555555555555555555555

...

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.46  E-value=0.025  Score=46.30  Aligned_cols=118  Identities=19%  Similarity=0.091  Sum_probs=85.9

Q ss_pred             CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------
Q 024712          129 PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM----ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT------  198 (263)
Q Consensus       129 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------  198 (263)
                      ......+..++.+..+.|.++.|...+.++...++    ..+.+.+..+.+....|+..+|+..++..+.....      
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence            34456788889999999999999999988887542    14667777888889999999999988887761110      


Q ss_pred             ---------------------C-------HHHHHHHHHHHHhc------CCCCcHHHHHHHHHHhhccCCCcchhHHHhH
Q 024712          199 ---------------------V-------PLYHLAYADVLYTL------GGVDNILLAKKYYASTIDLTGGKNTKALFGI  244 (263)
Q Consensus       199 ---------------------~-------~~~~~~la~~~~~~------g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l  244 (263)
                                           .       ..++..+|......      +.   .+++...|..+++.+|. ..++++.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~-~~k~~~~~  298 (352)
T PF02259_consen  223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSES---SDEILKYYKEATKLDPS-WEKAWHSW  298 (352)
T ss_pred             cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcccccccc---HHHHHHHHHHHHHhChh-HHHHHHHH
Confidence                                 1       12444555555555      55   89999999999999996 66677766


Q ss_pred             HHHHhh
Q 024712          245 CLVMFV  250 (263)
Q Consensus       245 ~~~~~~  250 (263)
                      +..+..
T Consensus       299 a~~~~~  304 (352)
T PF02259_consen  299 ALFNDK  304 (352)
T ss_pred             HHHHHH
Confidence            666544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.43  E-value=0.0072  Score=44.32  Aligned_cols=124  Identities=7%  Similarity=-0.022  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--CCHH----HHH
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TVPL----YHL  204 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~----~~~  204 (263)
                      ++..+|..|.+.|+.+.|++.|.++.+.....   .+.++.+..+.+..+++.....+..++-..-.  .++.    ...
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            45555666666666666666666655443222   23445555555555666665555555543321  1221    223


Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHhhccCCC---cchhHHHhHHHHHhhchhhHHHHhh
Q 024712          205 AYADVLYTLGGVDNILLAKKYYASTIDLTGG---KNTKALFGICLVMFVCHSTTYERAE  260 (263)
Q Consensus       205 ~la~~~~~~g~~~~~~~A~~~~~~al~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~  260 (263)
                      .-|..+...++   |.+|-+.|-.+..-...   ..+-...-++....-|..+..+|.+
T Consensus       118 ~~gL~~l~~r~---f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat~~R~e  173 (177)
T PF10602_consen  118 YEGLANLAQRD---FKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALATLDRSE  173 (177)
T ss_pred             HHHHHHHHhch---HHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHhCCHHH
Confidence            34555556677   88888877776544331   2233333334333336666666654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.43  E-value=0.0003  Score=36.70  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=12.6

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHH
Q 024712          169 WRELAEIYVSLQMYKQAAFCYEELI  193 (263)
Q Consensus       169 ~~~la~~~~~~g~~~~A~~~~~~al  193 (263)
                      |..||.+|...|++++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4445555555555555555555533

>PRK10941 hypothetical protein; Provisional

Probab=97.43  E-value=0.0039  Score=48.77  Aligned_cols=71  Identities=15%  Similarity=0.069  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLA  205 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  205 (263)
                      ..++-.++...++++.|+.+.+..+...|+++.-+...|.+|.+.|.+..|...++..++..|+++.+...
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            34455556666666666666666666666666666666666666666666666666666666666654433

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.42  E-value=0.0043  Score=43.30  Aligned_cols=85  Identities=21%  Similarity=0.194  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  143 (263)
                      ...+.......+..++.+++..++..+-...|+.+.+...-|.++...|+|.+|+.+++.+.+..+..+...-.++.|+.
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            34445555666678999999999999988999999999999999999999999999999999888777877777888888


Q ss_pred             HcCCh
Q 024712          144 AQGNF  148 (263)
Q Consensus       144 ~~g~~  148 (263)
                      ..|+.
T Consensus        90 al~Dp   94 (153)
T TIGR02561        90 AKGDA   94 (153)
T ss_pred             hcCCh
Confidence            88764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=97.42  E-value=0.0017  Score=53.87  Aligned_cols=127  Identities=11%  Similarity=0.124  Sum_probs=106.6

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 024712           74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE  153 (263)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  153 (263)
                      .+..|+.-.|-+-+..++...|.+|......+.+....|+|+.+...+..+-..-.....+...+....+..|++++|..
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            35679999999999999999999999999999999999999999988877665544444555666777889999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 024712          154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  200 (263)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  200 (263)
                      ...-.+...-.++++...-+.....+|-++++...+++++.++|...
T Consensus       379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence            99998887777788777667777788999999999999999987543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.42  E-value=0.0017  Score=55.06  Aligned_cols=117  Identities=15%  Similarity=0.142  Sum_probs=95.7

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 024712           85 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP--VLHKRRVAIAKAQGNFPTAIEWLNKYLETF  162 (263)
Q Consensus        85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  162 (263)
                      .++..+++..|.+......-+......|+..+|..++..++-..|...  .++..+|.++.+.|...+|--++..++...
T Consensus       200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA  279 (886)
T KOG4507|consen  200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA  279 (886)
T ss_pred             HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence            445556666676666666556666677999999999999998776543  477889999999999999999999998887


Q ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712          163 MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       163 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                      |.-..-++.++.++...|.+.....+|..+.+..|....
T Consensus       280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence            777777899999999999999999999999999886643

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.41  E-value=0.044  Score=43.72  Aligned_cols=153  Identities=13%  Similarity=-0.023  Sum_probs=115.0

Q ss_pred             HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCC
Q 024712           76 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK----GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGN  147 (263)
Q Consensus        76 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~  147 (263)
                      ..+++..+...+..+...  .++.....++..+...    .+..+|..+|+.+.+  ..++.+.+.+|.++..    ..+
T Consensus        53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d  128 (292)
T COG0790          53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLD  128 (292)
T ss_pred             ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccC
Confidence            456788888888877762  2335666777777654    568899999995554  5677888889999887    448


Q ss_pred             hhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcc-------cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCCCc
Q 024712          148 FPTAIEWLNKYLETFMAD-HDAWRELAEIYVSLQ-------MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVDN  218 (263)
Q Consensus       148 ~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~  218 (263)
                      ..+|..+|+++.+..... ..+...+|.+|..-.       +...|+..|.++-...  ++.+...+|.+|..- |-..+
T Consensus       129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d  206 (292)
T COG0790         129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD  206 (292)
T ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence            999999999999875443 344788888887642       3347999999888766  778899999888664 43445


Q ss_pred             HHHHHHHHHHhhccCC
Q 024712          219 ILLAKKYYASTIDLTG  234 (263)
Q Consensus       219 ~~~A~~~~~~al~~~~  234 (263)
                      +.+|..+|.++-+...
T Consensus       207 ~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         207 LKKAFRWYKKAAEQGD  222 (292)
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            9999999999998864

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.40  E-value=0.00037  Score=35.32  Aligned_cols=30  Identities=17%  Similarity=0.328  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMA  164 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  164 (263)
                      ++.+|.++...|++++|+..|++++...|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            444555555555555555555555555554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.36  E-value=0.0072  Score=38.85  Aligned_cols=73  Identities=15%  Similarity=0.043  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChhHHHHHHH
Q 024712           84 KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD--PVLHKRRVAIAKAQGNFPTAIEWLN  156 (263)
Q Consensus        84 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~  156 (263)
                      +.-+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+++.  ..+...+..++...|.-+.....++
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R   82 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR   82 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence            456777788888888888888888888888888888888888887655  3455555555555555443333333

>PRK10941 hypothetical protein; Provisional

Probab=97.34  E-value=0.0045  Score=48.44  Aligned_cols=65  Identities=12%  Similarity=-0.005  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ...++-.++...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.   +..|...++..++..|+
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c---~~~A~~DL~~fl~~~P~  247 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC---EHVALSDLSYFVEQCPE  247 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHhCCC
Confidence            456677888999999999999999999999999999999999999999   99999999999999987

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.30  E-value=0.0055  Score=40.47  Aligned_cols=46  Identities=11%  Similarity=0.046  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 024712          116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET  161 (263)
Q Consensus       116 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  161 (263)
                      .+++.+.++..+.|.....++.+|.-+-....|+++....++++..
T Consensus        62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            4566677777777777666666666555555566666666666543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.25  E-value=0.057  Score=47.25  Aligned_cols=149  Identities=18%  Similarity=0.034  Sum_probs=111.9

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC---
Q 024712           80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-----GLWAEAEKAYSSLLED-----NPLDPVLHKRRVAIAKAQG---  146 (263)
Q Consensus        80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g---  146 (263)
                      ...|..+++.+...  .+......+|.++..-     .+.+.|+.+++.+.+.     .-.++.+...+|.+|....   
T Consensus       228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~  305 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE  305 (552)
T ss_pred             hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence            45677888777664  3566667777777654     6899999999999771     1124557788999998854   


Q ss_pred             --ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCCCcHH
Q 024712          147 --NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVDNIL  220 (263)
Q Consensus       147 --~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~~~  220 (263)
                        +...|+.++.++.+.  .++.+.+.+|.++....   ++..|..+|..+.+.  .+..+.+.+|.||..- |-..+..
T Consensus       306 ~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~  381 (552)
T KOG1550|consen  306 KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE  381 (552)
T ss_pred             cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence              567799999998876  45667788999887755   578999999988764  4677888998888764 3344589


Q ss_pred             HHHHHHHHhhccCC
Q 024712          221 LAKKYYASTIDLTG  234 (263)
Q Consensus       221 ~A~~~~~~al~~~~  234 (263)
                      .|..+|.++.+.++
T Consensus       382 ~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  382 LAFAYYKKAAEKGN  395 (552)
T ss_pred             HHHHHHHHHHHccC
Confidence            99999999998874

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.19  E-value=0.0016  Score=50.87  Aligned_cols=109  Identities=9%  Similarity=-0.013  Sum_probs=70.1

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH----hc
Q 024712          104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV----SL  179 (263)
Q Consensus       104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~----~~  179 (263)
                      .+.-....|+.++|..+|+.++.+.|++++++..+|.+....++.-+|-++|-+++.+.|.+.+++.+.+...-    -.
T Consensus       122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~plV~~iD  201 (472)
T KOG3824|consen  122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPLVSAID  201 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchHHHHHH
Confidence            34445566888888888888888888888888888888877788888888888888888888887766553321    12


Q ss_pred             ccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHh
Q 024712          180 QMYKQAAFCYEELILSQP-TVPLYHLAYADVLYT  212 (263)
Q Consensus       180 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~  212 (263)
                      .++-..+....+.+..-+ .|......+-+.|+.
T Consensus       202 ~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf~  235 (472)
T KOG3824|consen  202 RRMLRSVDSKRDEFNHIQHSNTALRRMMRETYFL  235 (472)
T ss_pred             HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            223333444333333333 334444445555553

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.19  E-value=0.0029  Score=35.99  Aligned_cols=36  Identities=19%  Similarity=0.085  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH
Q 024712          168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (263)
Q Consensus       168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  203 (263)
                      .++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            455666666666666666666666666666665543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.18  E-value=0.0013  Score=34.25  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHH
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYL  159 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l  159 (263)
                      +..+|.++...|++++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455666666666666666666643

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.18  E-value=0.027  Score=39.43  Aligned_cols=73  Identities=16%  Similarity=-0.021  Sum_probs=48.1

Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      ...++.+++...+...--+.|+.+.+-..-|.++...|++.+|+..+.......+..+...-.++.|++.+|+
T Consensus        21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            3456666666666666666666666666666666666777777766666666666666666666666666666

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.18  E-value=0.0087  Score=46.95  Aligned_cols=69  Identities=16%  Similarity=0.064  Sum_probs=49.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      +.-....|+.++|..+|+.++...|++++++..+|.+....++.-+|-.+|-+++..+|.+..++.+.+
T Consensus       123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            334455677777777777777777777777777777777777777777777777777777776665544

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.09  E-value=0.15  Score=43.71  Aligned_cols=179  Identities=9%  Similarity=0.002  Sum_probs=135.2

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-CCCHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRR  138 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l  138 (263)
                      .+.....|..-.......|+++.....+++.+--...-...|...+......|+.+-|-..+..+.... |..+..+..-
T Consensus       293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~  372 (577)
T KOG1258|consen  293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE  372 (577)
T ss_pred             cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence            334455566666666778999999999999887666777889999999999999999988888887754 7777888888


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHH---HHHHHHhhCCCC---HHHHHHHHHHHHh
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF---CYEELILSQPTV---PLYHLAYADVLYT  212 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p~~---~~~~~~la~~~~~  212 (263)
                      +.+....|+++.|...+++..+..|+...+-..-+.....+|..+.+..   ++.....-..+.   .......+.....
T Consensus       373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~  452 (577)
T KOG1258|consen  373 ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK  452 (577)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence            8888999999999999999998889988887777888888898888873   333322211111   2344555554443


Q ss_pred             -cCCCCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712          213 -LGGVDNILLAKKYYASTIDLTGGKNTKALF  242 (263)
Q Consensus       213 -~g~~~~~~~A~~~~~~al~~~~~~~~~~~~  242 (263)
                       .++   .+.|...+..+++..|+ +...+.
T Consensus       453 i~~d---~~~a~~~l~~~~~~~~~-~k~~~~  479 (577)
T KOG1258|consen  453 IRED---ADLARIILLEANDILPD-CKVLYL  479 (577)
T ss_pred             HhcC---HHHHHHHHHHhhhcCCc-cHHHHH
Confidence             466   89999999999999986 544444

>smart00028 TPR Tetratricopeptide repeats

Probab=97.06  E-value=0.0012  Score=32.66  Aligned_cols=30  Identities=30%  Similarity=0.442  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712          168 AWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p  197 (263)
                      ++..+|.++...|++++|+.+++++++..|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344455555555555555555555554444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.03  E-value=0.079  Score=48.37  Aligned_cols=158  Identities=12%  Similarity=0.077  Sum_probs=104.7

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  141 (263)
                      +.+.+|.++|.+.++.|...+|++.|-+     .++|..+.....+..+.|.|++-+.++.-+-+... .+.+-..+...
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFA 1175 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHH
Confidence            3456677777777777888877777654     35666677777777777888877777776665432 22233344555


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH
Q 024712          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  221 (263)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~  221 (263)
                      |.+.++..+-...+     ..|+.+.. -..|.-++..|.|+.|.-+|..        ..-|..++..+..+|+   |+.
T Consensus      1176 yAkt~rl~elE~fi-----~gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~Lge---yQ~ 1238 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-----AGPNVANI-QQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGE---YQG 1238 (1666)
T ss_pred             HHHhchHHHHHHHh-----cCCCchhH-HHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHH---HHH
Confidence            55666654433222     24555543 5678888899999988777753        3457789999999999   999


Q ss_pred             HHHHHHHhhccCCCcchhHHHhHHHHH
Q 024712          222 AKKYYASTIDLTGGKNTKALFGICLVM  248 (263)
Q Consensus       222 A~~~~~~al~~~~~~~~~~~~~l~~~~  248 (263)
                      |...-+++-      ..+.|...+.+|
T Consensus      1239 AVD~aRKAn------s~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1239 AVDAARKAN------STKTWKEVCFAC 1259 (1666)
T ss_pred             HHHHhhhcc------chhHHHHHHHHH
Confidence            998888763      345555544443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.98  E-value=0.0015  Score=51.06  Aligned_cols=85  Identities=14%  Similarity=0.128  Sum_probs=52.3

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 024712           87 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR-RVAIAKAQGNFPTAIEWLNKYLETFMAD  165 (263)
Q Consensus        87 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~p~~  165 (263)
                      +.++...+|+++..|...+......|-+.+-...|.+++..+|.+.+.|.. -+.-+...++++.+...+.++++.+|.+
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            445555566666666666666666666666666666666666666666544 3334445566666666666666666666


Q ss_pred             HHHHHH
Q 024712          166 HDAWRE  171 (263)
Q Consensus       166 ~~~~~~  171 (263)
                      +..|..
T Consensus       176 p~iw~e  181 (435)
T COG5191         176 PRIWIE  181 (435)
T ss_pred             chHHHH
Confidence            666644

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.97  E-value=0.087  Score=43.35  Aligned_cols=140  Identities=19%  Similarity=0.068  Sum_probs=103.1

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------C------------CcHH---HHHHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------------P------------ESKR---VGRLEGILLEA  110 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------p------------~~~~---~~~~~a~~~~~  110 (263)
                      .|-..+++.+++.++..+|+...|.+++++++=..              +            .|-.   +.+.....+.+
T Consensus        36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~  115 (360)
T PF04910_consen   36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR  115 (360)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence            77889999999999999999999999998885421              1            1111   23344556778


Q ss_pred             cCcHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHcCChhHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHhcccH-
Q 024712          111 KGLWAEAEKAYSSLLEDNPL-DPVL-HKRRVAIAKAQGNFPTAIEWLNKYLETFMA-----DHDAWRELAEIYVSLQMY-  182 (263)
Q Consensus       111 ~~~~~~A~~~~~~~~~~~p~-~~~~-~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~-  182 (263)
                      .|-+..|.++.+-+++++|. ++.. ...+-....+.++++--+..++........     -|..-+..+.+++..++- 
T Consensus       116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~  195 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEE  195 (360)
T ss_pred             cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcc
Confidence            89999999999999999998 7754 444444446677887777777766552111     234567778888888887 


Q ss_pred             --------------HHHHHHHHHHHhhCCCC
Q 024712          183 --------------KQAAFCYEELILSQPTV  199 (263)
Q Consensus       183 --------------~~A~~~~~~al~~~p~~  199 (263)
                                    +.|...+.+|+...|.-
T Consensus       196 ~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  196 SSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             ccccccccccccchhHHHHHHHHHHHHhHHH
Confidence                          89999999999887753

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.95  E-value=0.002  Score=50.35  Aligned_cols=78  Identities=9%  Similarity=-0.011  Sum_probs=47.5

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRL-EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      .++.+|.+.+......|.+.+--.++.+++..+|.+++.|.. -+.-++..++++.+...+.+++..+|.+|..|...-
T Consensus       105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf  183 (435)
T COG5191         105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF  183 (435)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence            344444444444445566666666777777777776666654 344455566777777777777777777766655433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.90  E-value=0.0076  Score=34.32  Aligned_cols=32  Identities=22%  Similarity=0.148  Sum_probs=13.5

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH
Q 024712          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV  133 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~  133 (263)
                      +.+|..+.+.|+|++|..+.+.+++..|++..
T Consensus         5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q   36 (53)
T PF14853_consen    5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ   36 (53)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence            33444444444444444444444444444443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.90  E-value=0.26  Score=43.21  Aligned_cols=145  Identities=15%  Similarity=0.040  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHH-----cCChHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHc----C-cHHHHHHHHHHHHhcCC
Q 024712           65 TLYEQVSIAAMD-----CQCLDVAKDCIKVLQKQ-----FPESKRVGRLEGILLEAK----G-LWAEAEKAYSSLLEDNP  129 (263)
Q Consensus        65 ~~~~~la~~~~~-----~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~a~~~~~~----~-~~~~A~~~~~~~~~~~p  129 (263)
                      .....++.++..     ..|.+.|+.+++.+...     .-..+.+...+|.+|..-    . +++.|+.+|.++-+.. 
T Consensus       245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-  323 (552)
T KOG1550|consen  245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-  323 (552)
T ss_pred             HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-
Confidence            334445555544     36899999999998772     112455677889999884    3 7788999999998764 


Q ss_pred             CCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----ccHHHHHHHHHHHHhhCCCCHHH
Q 024712          130 LDPVLHKRRVAIAKAQG---NFPTAIEWLNKYLETFMADHDAWRELAEIYVSL----QMYKQAAFCYEELILSQPTVPLY  202 (263)
Q Consensus       130 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~  202 (263)
                       ++.+.+.+|.++....   ++..|..+|..+...  .+..+.+.+|.+|..-    -+...|..+++++-+.+  .+.+
T Consensus       324 -~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A  398 (552)
T KOG1550|consen  324 -NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSA  398 (552)
T ss_pred             -CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Chhh
Confidence             5667778888887765   567999999998764  5678889999988653    47889999999999887  4555


Q ss_pred             HHHHHHHHHhc-CC
Q 024712          203 HLAYADVLYTL-GG  215 (263)
Q Consensus       203 ~~~la~~~~~~-g~  215 (263)
                      ...++..+... +.
T Consensus       399 ~~~~~~~~~~g~~~  412 (552)
T KOG1550|consen  399 AYLLGAFYEYGVGR  412 (552)
T ss_pred             HHHHHHHHHHcccc
Confidence            56665555444 44

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.2  Score=41.13  Aligned_cols=161  Identities=12%  Similarity=0.155  Sum_probs=113.0

Q ss_pred             ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHH------------HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q 024712           38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIA------------AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEG  105 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~------------~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a  105 (263)
                      -.++++.+...++..       +|+...+|...-.+            ...+.-+++-+.+...++..+|++..+|..+.
T Consensus        44 yd~e~l~lt~~ll~~-------npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~  116 (421)
T KOG0529|consen   44 YDEEHLELTSELLEK-------NPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK  116 (421)
T ss_pred             cchHHHHHHHHHHhh-------CchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            356778888888877       66655554432111            11223456677888899999999999999999


Q ss_pred             HHHHHcC--cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Q 024712          106 ILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ----GNFPTAIEWLNKYLETFMADHDAWRELAEIYVS-  178 (263)
Q Consensus       106 ~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-  178 (263)
                      .++.+.+  ++..=+.+..++++.+|.+..+|...-.+....    ....+=+++..+++..++.+..+|.....+.-. 
T Consensus       117 w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l  196 (421)
T KOG0529|consen  117 WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL  196 (421)
T ss_pred             HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence            9998776  467888999999999999887665443333322    225666788899999999999999887766542 


Q ss_pred             -----cc------cHHHHHHHHHHHHhhCCCCHHHHHH
Q 024712          179 -----LQ------MYKQAAFCYEELILSQPTVPLYHLA  205 (263)
Q Consensus       179 -----~g------~~~~A~~~~~~al~~~p~~~~~~~~  205 (263)
                           .|      ....-+.....++-.+|++..+|..
T Consensus       197 ~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529|consen  197 HPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             ccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence                 23      1234456667777889988877655

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=96.82  E-value=0.032  Score=51.88  Aligned_cols=163  Identities=15%  Similarity=0.035  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHcCChHHHHH------HHH-HHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--------CCCC
Q 024712           67 YEQVSIAAMDCQCLDVAKD------CIK-VLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLD  131 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~------~~~-~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~  131 (263)
                      ..+.+......|.+.+|.+      ++. ..-..+|.....+..++.++...|++++|+..-.++.-.        .|+.
T Consensus       935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen  935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred             hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence            3445666677788887777      555 333456788899999999999999999999988777543        2444


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC------
Q 024712          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP------  197 (263)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------  197 (263)
                      ...+.+++...+..+....|...+.++...        .|.......+++.++...++++.|+.+.+.|+..+.      
T Consensus      1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred             HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence            567788888889999999999999998864        455566677889999999999999999999997542      


Q ss_pred             --CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          198 --TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       198 --~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                        .....+..+++.+...++   +..|..+.+....+
T Consensus      1095 ~l~~~~~~~~~a~l~~s~~d---fr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKD---FRNALEHEKVTYGI 1128 (1236)
T ss_pred             chhhhhHHHHHHHHHhhhHH---HHHHHHHHhhHHHH
Confidence              223456677888888888   77777666655543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.1  Score=44.66  Aligned_cols=127  Identities=15%  Similarity=-0.068  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHhCCCcHHHHHH--HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH-HH
Q 024712           83 AKDCIKVLQKQFPESKRVGRL--EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK-YL  159 (263)
Q Consensus        83 A~~~~~~~~~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~l  159 (263)
                      ++..+...+..+|.++.+...  +...+...+....+......++..+|.+..++.+++......|....+...+.. +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            333344444445555544322  244455556666666666666666666666666666666555554444444433 55


Q ss_pred             HhcCCCHHHHHHH------HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712          160 ETFMADHDAWREL------AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (263)
Q Consensus       160 ~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (263)
                      ...|++......+      +......|+..++....+++....|.++.+...+...
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            5556655443333      5555555666666666666666666665554444443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.76  E-value=0.31  Score=41.94  Aligned_cols=148  Identities=13%  Similarity=0.080  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ  145 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  145 (263)
                      |...+.-....|+.+-|...+..+.+.+ |..+.+...-+.+-...|++..|...++++.+.-|+...+-...+......
T Consensus       334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~  413 (577)
T KOG1258|consen  334 WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRK  413 (577)
T ss_pred             HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh
Confidence            3334444445599998988888888876 678888888999999999999999999999998899888888888888999


Q ss_pred             CChhHHHH---HHHHHHHhcCCC----HHHHHHHHHH-HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          146 GNFPTAIE---WLNKYLETFMAD----HDAWRELAEI-YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       146 g~~~~A~~---~~~~~l~~~p~~----~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      |+.+.+..   .+..... ...+    ...+...+.. +.-.++.+.|...+.+++...|.+...+..+-.+....+.
T Consensus       414 ~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~  490 (577)
T KOG1258|consen  414 GNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS  490 (577)
T ss_pred             cchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence            99888874   2222221 1111    2233344433 3456889999999999999999998888888887777664

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.21  Score=42.87  Aligned_cols=133  Identities=17%  Similarity=-0.036  Sum_probs=101.6

Q ss_pred             cHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 024712          113 LWAEAEKAYSSLLEDNPLDPVLHKR--RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYE  190 (263)
Q Consensus       113 ~~~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  190 (263)
                      .-.-++..+...+..+|.++..+..  +...+...+....+...+..++..+|.+..+..+|+......|..-.+...+.
T Consensus        46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~  125 (620)
T COG3914          46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS  125 (620)
T ss_pred             chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3333666666667778888875433  46666777888899999999999999999999999988887776665555555


Q ss_pred             H-HHhhCCCCHHHHHHH------HHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          191 E-LILSQPTVPLYHLAY------ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       191 ~-al~~~p~~~~~~~~l------a~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                      . +....|.+......+      +.....+|+   ..++.....++..+.|. +.+..-+++....
T Consensus       126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~d~~p~-~~~~~~~~~~~r~  187 (620)
T COG3914         126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR---TAEAELALERAVDLLPK-YPRVLGALMTARQ  187 (620)
T ss_pred             HHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhhhh-hhhhHhHHHHHHH
Confidence            4 888889887655444      888888899   99999999999999986 6666666665533

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.18  Score=42.31  Aligned_cols=153  Identities=14%  Similarity=0.055  Sum_probs=109.0

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-c--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC-------H
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-S--KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-------P  132 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~  132 (263)
                      .+.+..-+|......+.++.|...|..+.+.... +  +.+..++|..|.+.|+-+.--+.++.+-..+...       .
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a  445 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEA  445 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHH
Confidence            4566677888888899999999999999887542 2  3445678999999888665555555443332111       2


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC---CCCHH--
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQ---PTVPL--  201 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~--  201 (263)
                      .+++..|...+.++++.+|...+.+.++.....      .-.+..||.+....|+..++.+...-++.+.   |+-+.  
T Consensus       446 ~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqL  525 (629)
T KOG2300|consen  446 SILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQL  525 (629)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHH
Confidence            366778888899999999999999999875211      2235668899999999999999888887664   34333  


Q ss_pred             -HHHHHHHHHHhcCC
Q 024712          202 -YHLAYADVLYTLGG  215 (263)
Q Consensus       202 -~~~~la~~~~~~g~  215 (263)
                       ....+-.++...|+
T Consensus       526 ws~si~~~L~~a~g~  540 (629)
T KOG2300|consen  526 WSSSILTDLYQALGE  540 (629)
T ss_pred             HHHHHHHHHHHHhCc
Confidence             22334566667776

>smart00028 TPR Tetratricopeptide repeats

Probab=96.61  E-value=0.0053  Score=30.18  Aligned_cols=28  Identities=29%  Similarity=0.223  Sum_probs=12.5

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCC
Q 024712          102 RLEGILLEAKGLWAEAEKAYSSLLEDNP  129 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p  129 (263)
                      ..+|.++...+++++|+..++++++.+|
T Consensus         5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        5 YNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            3444444444444444444444444433

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.60  E-value=0.067  Score=39.24  Aligned_cols=98  Identities=14%  Similarity=0.002  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--CCHH----HH
Q 024712           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--ADHD----AW  169 (263)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~----~~  169 (263)
                      .++..+|..|.+.|+.++|++.|.++.......   .+.+..+..+.+..+++......+.++-....  .+..    .-
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            355567777777777777777777766543222   24556667777777777777777776655422  2221    23


Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712          170 RELAEIYVSLQMYKQAAFCYEELILSQ  196 (263)
Q Consensus       170 ~~la~~~~~~g~~~~A~~~~~~al~~~  196 (263)
                      ..-|..+...++|..|...|-.+....
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            345667777889999988887766443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.57  E-value=0.028  Score=46.98  Aligned_cols=124  Identities=16%  Similarity=0.088  Sum_probs=100.8

Q ss_pred             HHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHH
Q 024712          109 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC  188 (263)
Q Consensus       109 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~  188 (263)
                      ...|+...|-.-+..++...|.+|......+.+....|+|+.+...+..+-..-.....+...+-...+.+|++++|...
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~  379 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST  379 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence            34588888888889999999999988888899999999999999888766555444445555566677889999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          189 YEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       189 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ..-.+.-.-.++.+...-+-....+|-   ++++..++++.+.++|.
T Consensus       380 a~~~l~~eie~~ei~~iaa~sa~~l~~---~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        380 AEMMLSNEIEDEEVLTVAAGSADALQL---FDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHHhccccCChhheeeecccHHHHhH---HHHHHHHHHHHhccCCh
Confidence            888887777777776666666667777   99999999999999986

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.55  E-value=0.011  Score=49.63  Aligned_cols=92  Identities=22%  Similarity=0.083  Sum_probs=73.4

Q ss_pred             HHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHH
Q 024712          108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ  184 (263)
Q Consensus       108 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~  184 (263)
                      .+..+.+..|+..|.+++...|.....+.+.+.++++.+   +.-.|+.....+++++|....+|+.|+.++...+++.+
T Consensus       384 ~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e  463 (758)
T KOG1310|consen  384 GLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE  463 (758)
T ss_pred             hhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence            344466778888888888888888888888888887753   44556777777888888888999999999999999999


Q ss_pred             HHHHHHHHHhhCCCC
Q 024712          185 AAFCYEELILSQPTV  199 (263)
Q Consensus       185 A~~~~~~al~~~p~~  199 (263)
                      |+.+...+....|.+
T Consensus       464 al~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  464 ALSCHWALQMSFPTD  478 (758)
T ss_pred             hhhhHHHHhhcCchh
Confidence            998888877777754

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.53  E-value=0.0049  Score=46.18  Aligned_cols=59  Identities=25%  Similarity=0.178  Sum_probs=37.9

Q ss_pred             HHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH
Q 024712          108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH  166 (263)
Q Consensus       108 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  166 (263)
                      ....++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|+++++++|.+.
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            34456666666666666666666666666666666666666666666666666666553

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.52  E-value=0.3  Score=40.76  Aligned_cols=121  Identities=12%  Similarity=0.099  Sum_probs=80.2

Q ss_pred             HHHHHHHHcCC-hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHH--HHH------HHHh---cCCC---CHH
Q 024712           69 QVSIAAMDCQC-LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEK--AYS------SLLE---DNPL---DPV  133 (263)
Q Consensus        69 ~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~~------~~~~---~~p~---~~~  133 (263)
                      .-|.-+.+.|. -++|+.+++.+++..|.+.......  ..+-...|..|+.  .+.      ..++   +.|-   +..
T Consensus       384 ~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~e  461 (549)
T PF07079_consen  384 FGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEE  461 (549)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHH
Confidence            34666777777 7889999999998888665433211  1111222333322  111      2221   1222   222


Q ss_pred             HHH--HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712          134 LHK--RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (263)
Q Consensus       134 ~~~--~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  192 (263)
                      .-+  .=|..++..|++.++..+-.=..++.| ++.++..+|.+.+...+|++|..++...
T Consensus       462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            222  335567889999999988888889999 8999999999999999999999998653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.52  E-value=0.18  Score=36.38  Aligned_cols=135  Identities=16%  Similarity=0.092  Sum_probs=72.6

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCC
Q 024712           74 AMDCQCLDVAKDCIKVLQKQFPES--KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----VLHKRRVAIAKAQGN  147 (263)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~  147 (263)
                      +...+..++|+.-|..+-+..-.+  ..+....+.+....|+-..|+..|..+-...|...    .+...-+.++...|.
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence            344566666766666655543221  23344556666666777777777776655433211    233444555566666


Q ss_pred             hhHHHHHHHHHH-HhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712          148 FPTAIEWLNKYL-ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (263)
Q Consensus       148 ~~~A~~~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (263)
                      |+......+..- ..+|-...+...||..-++.|++.+|...|.+... +...|....+.+++
T Consensus       148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~  209 (221)
T COG4649         148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI  209 (221)
T ss_pred             HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence            666544444322 22344445556666666677777777777766654 33334444444443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.48  E-value=0.13  Score=34.57  Aligned_cols=85  Identities=13%  Similarity=0.103  Sum_probs=48.4

Q ss_pred             HHcCcHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHh-------cCCCHHHH
Q 024712          109 EAKGLWAEAEKAYSSLLEDNPLD------------PVLHKRRVAIAKAQGNFPTAIEWLNKYLET-------FMADHDAW  169 (263)
Q Consensus       109 ~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~  169 (263)
                      ...|-|++|...++++++...+-            ..++..++..+..+|+|++++....+++..       +.+....|
T Consensus        20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW   99 (144)
T PF12968_consen   20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW   99 (144)
T ss_dssp             HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence            34467777777777777643211            225556666777777777776666666643       33333333


Q ss_pred             ----HHHHHHHHhcccHHHHHHHHHHHH
Q 024712          170 ----RELAEIYVSLQMYKQAAFCYEELI  193 (263)
Q Consensus       170 ----~~la~~~~~~g~~~~A~~~~~~al  193 (263)
                          +..|..+...|+.++|+..|+.+-
T Consensus       100 IaaVfsra~Al~~~Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen  100 IAAVFSRAVALEGLGRKEEALKEFRMAG  127 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence                345566666677777766666554

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.40  E-value=0.075  Score=36.53  Aligned_cols=54  Identities=15%  Similarity=0.121  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH
Q 024712          115 AEAEKAYSSLLE-DNPLD-PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA  168 (263)
Q Consensus       115 ~~A~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  168 (263)
                      .+.+.+++.+++ .+|.. .+..+.++.-+++.++|+.++.+.+..++..|++..+
T Consensus        52 ~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   52 QEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             HHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence            344444444443 22222 1334444444444555555555555555554444433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.34  E-value=0.011  Score=44.40  Aligned_cols=61  Identities=25%  Similarity=0.248  Sum_probs=49.0

Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                      .....++.+.+.+.|.+++++.|.....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            4456677888888888888888888888888888888888888888888888888887643

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.33  E-value=0.39  Score=38.13  Aligned_cols=124  Identities=15%  Similarity=0.030  Sum_probs=91.9

Q ss_pred             HHHcCChHHHHHHHHHHHHhC-CCc-------HHHHHHHHHHHHHcC-cHHHHHHHHHHHHhc----CC---CC------
Q 024712           74 AMDCQCLDVAKDCIKVLQKQF-PES-------KRVGRLEGILLEAKG-LWAEAEKAYSSLLED----NP---LD------  131 (263)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~-p~~-------~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~----~p---~~------  131 (263)
                      ....|+++.|..++.++-... ..+       ....+..|......+ ++++|..+++++++.    .+   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            467899999999999998765 322       345667777788889 999999999999886    21   11      


Q ss_pred             -HHHHHHHHHHHHHcCChh---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712          132 -PVLHKRRVAIAKAQGNFP---TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       132 -~~~~~~l~~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  197 (263)
                       ..++..++.++...+.++   +|...++.+-...|+.+..+..--.+....++.+.+.+.+.+++..-+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence             236677888888877654   455555556566788787775555555568899999999999987655

It is also involved in sporulation [].

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.32  E-value=0.093  Score=36.08  Aligned_cols=73  Identities=12%  Similarity=0.020  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHcC---ChhHHHHHHHHHHH-hcCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH
Q 024712          132 PVLHKRRVAIAKAQG---NFPTAIEWLNKYLE-TFMAD-HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  204 (263)
Q Consensus       132 ~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  204 (263)
                      ....++++.++....   +..+.+.+++..++ ..|.. -+..+.|+..+++.++|+.++.+...+++..|++..+..
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            456677787777654   45678899999986 44443 467788999999999999999999999999999877643

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.24  E-value=0.44  Score=37.80  Aligned_cols=153  Identities=14%  Similarity=0.115  Sum_probs=101.8

Q ss_pred             HHHHHHHhcCccccc-ccCcc----hHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhC----C---Cc-------HHHHH
Q 024712           43 LRHGLSILNDPKKRS-ALGPD----VWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQKQF----P---ES-------KRVGR  102 (263)
Q Consensus        43 ~~~~~~~~~~~~~~~-~~~~~----~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~----p---~~-------~~~~~  102 (263)
                      .+++..+..+.+... ..+|+    ...++++.|...+..+ +++.|...++++.+..    +   ..       ..++.
T Consensus         9 ~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~   88 (278)
T PF08631_consen    9 LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILR   88 (278)
T ss_pred             HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHH
Confidence            456666666544444 45664    4566778899999999 9999999999998872    1   11       23566


Q ss_pred             HHHHHHHHcCcH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH--H
Q 024712          103 LEGILLEAKGLW---AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY--V  177 (263)
Q Consensus       103 ~~a~~~~~~~~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--~  177 (263)
                      .++.++...+.+   ++|..+++.+....|+.+..+...-.++...++.+.+.+.+.+.+...+-....+.....++  +
T Consensus        89 ~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l  168 (278)
T PF08631_consen   89 LLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQL  168 (278)
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence            788888887764   45666777777777888877766666666688999999999999976542222222222222  2


Q ss_pred             hcccHHHHHHHHHHHHhh
Q 024712          178 SLQMYKQAAFCYEELILS  195 (263)
Q Consensus       178 ~~g~~~~A~~~~~~al~~  195 (263)
                      .......|..++...+..
T Consensus       169 ~~~~~~~a~~~ld~~l~~  186 (278)
T PF08631_consen  169 AEKSPELAAFCLDYLLLN  186 (278)
T ss_pred             HhhCcHHHHHHHHHHHHH
Confidence            234456677777776643

It is also involved in sporulation [].

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.21  E-value=0.028  Score=47.41  Aligned_cols=98  Identities=13%  Similarity=-0.017  Sum_probs=81.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK---GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  146 (263)
                      -+.-.+..+....++..+.++++..|+....+...+.++...   |+.-.|+.-...++.++|....+++.++.++...+
T Consensus       380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~  459 (758)
T KOG1310|consen  380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT  459 (758)
T ss_pred             hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence            344444456677889999999999999988888888888765   56667788888889999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCHH
Q 024712          147 NFPTAIEWLNKYLETFMADHD  167 (263)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~~~  167 (263)
                      ++.+|+.+...+...+|.+..
T Consensus       460 r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  460 RYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             hHHHhhhhHHHHhhcCchhhh
Confidence            999999999988888886643

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=0.1  Score=45.18  Aligned_cols=97  Identities=14%  Similarity=0.066  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  138 (263)
                      .++.+-|...++..+|..+++.|...+...|.+      +.....++.+|....+.+.|.++++++-+.+|.++-.-...
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            344556777889999999999999999887743      45667889999999999999999999999999998877777


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHh
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLET  161 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~  161 (263)
                      -.+....|.-++|+.+..+....
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhh
Confidence            77778889999999888876654

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.10  E-value=0.095  Score=39.71  Aligned_cols=28  Identities=25%  Similarity=0.286  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 024712           99 RVGRLEGILLEAKGLWAEAEKAYSSLLE  126 (263)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~  126 (263)
                      .+.+++|.+..+.|++++|..+|.+++.
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence            3444445555555555555555555544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.09  E-value=0.31  Score=41.38  Aligned_cols=118  Identities=19%  Similarity=0.204  Sum_probs=63.0

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 024712           73 AAMDCQCLDVAKDCIKVLQKQFPES-KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA  151 (263)
Q Consensus        73 ~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  151 (263)
                      ...-.++++++.++... -+..|.- .......+..+...|-.+.|+.+        ..++...+.++   .+.|+.+.|
T Consensus       270 ~av~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~--------~~D~~~rFeLA---l~lg~L~~A  337 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQF--------VTDPDHRFELA---LQLGNLDIA  337 (443)
T ss_dssp             HHHHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHH--------SS-HHHHHHHH---HHCT-HHHH
T ss_pred             HHHHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhh--------cCChHHHhHHH---HhcCCHHHH
Confidence            33556888887777641 1222322 23345566677777777777654        23344444444   467777777


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          152 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       152 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      .+..++     .+++..|..||.....+|+++-|..+|+++-.        +..|..+|...|+
T Consensus       338 ~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~  388 (443)
T PF04053_consen  338 LEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGD  388 (443)
T ss_dssp             HHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-
T ss_pred             HHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCC
Confidence            655432     24667788888888888888888888876532        2334445555555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.03  E-value=0.87  Score=39.26  Aligned_cols=158  Identities=16%  Similarity=0.072  Sum_probs=112.3

Q ss_pred             cCChHHHHHHHHHHHHhC------------CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----------------
Q 024712           77 CQCLDVAKDCIKVLQKQF------------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----------------  127 (263)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------------  127 (263)
                      ...|++|...|.-+....            |-+...+..++.+...+|+.+.|....++++-.                 
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            356778888888777754            345567888999999999999888888887641                 


Q ss_pred             ----CCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-CHHHHHHHHHHHH-hcccHHHHHHHHHHH-----H
Q 024712          128 ----NPLDPV---LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-DHDAWRELAEIYV-SLQMYKQAAFCYEEL-----I  193 (263)
Q Consensus       128 ----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~a-----l  193 (263)
                          .|.|-.   +.+.....+.+.|-+..|.++++-.+.++|. +|-+...+..+|. ...+|+--|..++..     +
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l  410 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL  410 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence                222222   3344555667789999999999999999999 8877777776664 467788777777765     3


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          194 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       194 ~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ...|+.+ .-..+|..|.........+.|...+.+|+...|.
T Consensus       411 ~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  411 SQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             hhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            3445432 2345566665555433467899999999998884

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.00  E-value=0.021  Score=30.37  Aligned_cols=28  Identities=29%  Similarity=0.272  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712          168 AWRELAEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       168 ~~~~la~~~~~~g~~~~A~~~~~~al~~  195 (263)
                      ++.++|.+|...|++++|..++++++.+
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            4556666666666666666666666543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.98  E-value=0.14  Score=44.49  Aligned_cols=95  Identities=15%  Similarity=0.111  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD  208 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  208 (263)
                      +.+-+.-.++..+|..+++.|...+...|.|      ......++.||..+.+.+.|.+++++|-+.+|.++.....+-.
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            3455667788889999999999999887766      4456788999999999999999999999999999988888888


Q ss_pred             HHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          209 VLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       209 ~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      +....|.   -++|+.........
T Consensus       437 ~~~~E~~---Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  437 SFLAEDK---SEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHhcc---hHHHHHHHHHHHhh
Confidence            8888888   88888887766543

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.95  E-value=0.57  Score=36.51  Aligned_cols=172  Identities=12%  Similarity=0.023  Sum_probs=103.2

Q ss_pred             HcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHHHHHc
Q 024712           76 DCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLEDN-----PL-DPVLHKRRVAIAKAQ  145 (263)
Q Consensus        76 ~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~-~~~~~~~l~~~~~~~  145 (263)
                      ...+.++|+..|++.++..|...    .++..+..+.++.++|++-.+.|++.+.--     .+ +......+-..-...
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            44689999999999999988543    345667788899999998888888776521     11 111222222222222


Q ss_pred             CChhHHHHHHHHHHHh--cCCCHHHHH----HHHHHHHhcccHHHHHHHHHHHHhhCCCC------------HHHHHHHH
Q 024712          146 GNFPTAIEWLNKYLET--FMADHDAWR----ELAEIYVSLQMYKQAAFCYEELILSQPTV------------PLYHLAYA  207 (263)
Q Consensus       146 g~~~~A~~~~~~~l~~--~p~~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la  207 (263)
                      .+.+---.+|+..+..  +..+...|+    .||.+|+..|+|.+-.+.+++.-.....+            ..++..--
T Consensus       119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI  198 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI  198 (440)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence            3333333444443332  223334443    68999999999998888777765432211            11333334


Q ss_pred             HHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          208 DVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       208 ~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      +.|-...+   ..+-...|++++.+.....-....|.+.-|.+
T Consensus       199 QmYT~qKn---NKkLK~lYeqalhiKSAIPHPlImGvIRECGG  238 (440)
T KOG1464|consen  199 QMYTEQKN---NKKLKALYEQALHIKSAIPHPLIMGVIRECGG  238 (440)
T ss_pred             hhhhhhcc---cHHHHHHHHHHHHhhccCCchHHHhHHHHcCC
Confidence            56666666   67777889999887554222344566666555

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.89  E-value=0.1  Score=40.49  Aligned_cols=69  Identities=17%  Similarity=0.158  Sum_probs=49.2

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH
Q 024712          136 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  204 (263)
Q Consensus       136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  204 (263)
                      .++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|...|.+..|+..++..+...|+++.+-.
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence            334445566677777777777777777777777777777777777777777777777777777765433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.89  E-value=0.099  Score=39.61  Aligned_cols=84  Identities=19%  Similarity=0.136  Sum_probs=42.4

Q ss_pred             CcHHHHHHHHHHHHhc----CCCC---HHHHHHHHHHHHHcCChhH-------HHHHHHHHHHhcC--CC----HHHHHH
Q 024712          112 GLWAEAEKAYSSLLED----NPLD---PVLHKRRVAIAKAQGNFPT-------AIEWLNKYLETFM--AD----HDAWRE  171 (263)
Q Consensus       112 ~~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~-------A~~~~~~~l~~~p--~~----~~~~~~  171 (263)
                      ..+++|++.|.-++-.    .+..   ...+..+|.+|...|+.+.       |...|.++++...  ..    ..+.+.
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL  170 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL  170 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence            4455555555544431    1111   2455667777777776443       3333333333221  11    344555


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhh
Q 024712          172 LAEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       172 la~~~~~~g~~~~A~~~~~~al~~  195 (263)
                      +|.+....|++++|..+|.+++..
T Consensus       171 igeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  171 IGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHcC
Confidence            666666666666666666666644

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=95.87  E-value=0.49  Score=42.11  Aligned_cols=140  Identities=19%  Similarity=0.178  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHH------HH----hCCCc-HHHHHHHHHHHHHcCcHHHHHHHHHHH---------
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVL------QK----QFPES-KRVGRLEGILLEAKGLWAEAEKAYSSL---------  124 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~------~~----~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~---------  124 (263)
                      ..|...|..+-+..++++|+++|++.      ++    .+|.. ...-...|.-+...|+++.|+..|-++         
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea  741 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA  741 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence            34555666666677888888877643      22    13422 122233455555566666665544332         


Q ss_pred             -----------------HhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHH
Q 024712          125 -----------------LEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF  187 (263)
Q Consensus       125 -----------------~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~  187 (263)
                                       ...+ .....+-.++..|...|+++.|...|-++=        ....-...|-+.|++.+|.+
T Consensus       742 ai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~k  812 (1636)
T KOG3616|consen  742 AIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFK  812 (1636)
T ss_pred             HhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHH
Confidence                             1111 111234455666666777777766665541        11222345666777777766


Q ss_pred             HHHHHHhhCCCC-HHHHHHHHHHHHhcCC
Q 024712          188 CYEELILSQPTV-PLYHLAYADVLYTLGG  215 (263)
Q Consensus       188 ~~~~al~~~p~~-~~~~~~la~~~~~~g~  215 (263)
                      +-.++..  |.. ...+...+.-+-..|+
T Consensus       813 la~e~~~--~e~t~~~yiakaedldehgk  839 (1636)
T KOG3616|consen  813 LAEECHG--PEATISLYIAKAEDLDEHGK  839 (1636)
T ss_pred             HHHHhcC--chhHHHHHHHhHHhHHhhcc
Confidence            6655542  332 2234444555555555

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.81  E-value=0.26  Score=45.56  Aligned_cols=98  Identities=19%  Similarity=0.176  Sum_probs=77.9

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHc----C---cHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712           71 SIAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAK----G---LWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (263)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~----~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~  140 (263)
                      -.+++..+.|+.|+..|+++...+|+..   ++.+..|......    |   .+++|+..|++... .|.-|--|...+.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHH
Confidence            4456677899999999999999999643   4566666665443    2   57888888888665 4666777888999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHH
Q 024712          141 IAKAQGNFPTAIEWLNKYLETFMADHDAW  169 (263)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  169 (263)
                      +|..+|++++-++++.-+++..|..|..-
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (932)
T PRK13184        561 VYQRLGEYNEEIKSLLLALKRYSQHPEIS  589 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence            99999999999999999999999887643

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.78  E-value=0.48  Score=34.32  Aligned_cols=124  Identities=15%  Similarity=0.125  Sum_probs=93.1

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH----HHHHHHHHHHHh
Q 024712          105 GILLEAKGLWAEAEKAYSSLLEDNPLDP--VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH----DAWRELAEIYVS  178 (263)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~  178 (263)
                      +.-+.+.+..++|+..|..+-...-...  -+....+.+....|+...|+..|..+-...|...    .+...-+.++..
T Consensus        65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD  144 (221)
T COG4649          65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD  144 (221)
T ss_pred             HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence            4445567888999999988877654444  3567788899999999999999999876654432    234556777888


Q ss_pred             cccHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712          179 LQMYKQAAFCYEELI-LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  231 (263)
Q Consensus       179 ~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~  231 (263)
                      .|.|++-....+..- ..+|--..+...||..-++.|+   +.+|.+.|..+..
T Consensus       145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~  195 (221)
T COG4649         145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN  195 (221)
T ss_pred             cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc
Confidence            999998776655432 2334445678889999999999   9999999998765

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=0.68  Score=38.17  Aligned_cols=161  Identities=18%  Similarity=0.092  Sum_probs=113.2

Q ss_pred             HHcCChH-HHHHHHHHHHHhCCCcHHHHHHHHHHHH------------HcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712           75 MDCQCLD-VAKDCIKVLQKQFPESKRVGRLEGILLE------------AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (263)
Q Consensus        75 ~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~~a~~~~------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  141 (263)
                      .+.|.++ ++++.-..++..+|+...+|...-.++.            ...-+++-+.+...++..+|+...+|+....+
T Consensus        39 r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~  118 (421)
T KOG0529|consen   39 REAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWV  118 (421)
T ss_pred             HhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            4445554 6777778888888987766654433322            22346777888999999999999999999999


Q ss_pred             HHHcCC--hhHHHHHHHHHHHhcCCCHHHHHHHHHHH----HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc--
Q 024712          142 AKAQGN--FPTAIEWLNKYLETFMADHDAWRELAEIY----VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL--  213 (263)
Q Consensus       142 ~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--  213 (263)
                      +.+.+.  +..=+...+++++.+|.+..+|...=.+.    .......+=+.+..+++..++.|..+|.....++-..  
T Consensus       119 L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~  198 (421)
T KOG0529|consen  119 LQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHP  198 (421)
T ss_pred             HHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhcc
Confidence            988764  57788999999999999988875533333    2223356778889999999999999888877666532  


Q ss_pred             ----CC---CCcHHHHHHHHHHhhccCCC
Q 024712          214 ----GG---VDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       214 ----g~---~~~~~~A~~~~~~al~~~~~  235 (263)
                          |+   ..-...-...-..++-.+|+
T Consensus       199 ~~~~g~~~~~~~l~sEle~v~saiFTdp~  227 (421)
T KOG0529|consen  199 KEADGNFMPKELLQSELEMVHSAIFTDPE  227 (421)
T ss_pred             ccccCccCCHHHHHHHHHHHHHHHhcCcc
Confidence                21   01133445555566666776

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=95.61  E-value=1.7  Score=39.48  Aligned_cols=166  Identities=15%  Similarity=0.001  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC----CCCHH--
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDN----PLDPV--  133 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~--  133 (263)
                      ....-.+.+....|+++.|.+..+.++..-|.+     ..+....|.+..-.|++++|..+.+.+.+..    .....  
T Consensus       459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~  538 (894)
T COG2909         459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALW  538 (894)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            333346777788999999999999999988853     3455677888889999999999999888762    22222  


Q ss_pred             HHHHHHHHHHHcCCh--hHHHHHHHHHH----HhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHh----hCCCCHH--
Q 024712          134 LHKRRVAIAKAQGNF--PTAIEWLNKYL----ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL----SQPTVPL--  201 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~--~~A~~~~~~~l----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~--  201 (263)
                      +....+.++..+|..  .+....+...-    ...|.+.......+.++...-+++.+..-....++    ..|....  
T Consensus       539 ~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~  618 (894)
T COG2909         539 SLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSR  618 (894)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHH
Confidence            344567788888833  23333332222    22333333333333333333334444444444433    3343322  


Q ss_pred             -HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712          202 -YHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       202 -~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~  233 (263)
                       ....++.+.+..|+   +++|.........+-
T Consensus       619 ~~~~~LA~l~~~~Gd---l~~A~~~l~~~~~l~  648 (894)
T COG2909         619 LALSMLAELEFLRGD---LDKALAQLDELERLL  648 (894)
T ss_pred             HHHHHHHHHHHhcCC---HHHHHHHHHHHHHHh
Confidence             23489999999999   999999998876653

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.55  E-value=0.26  Score=36.55  Aligned_cols=71  Identities=23%  Similarity=0.208  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC----CHHHHHHHHHHHHhcccHHHHH
Q 024712          115 AEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA----DHDAWRELAEIYVSLQMYKQAA  186 (263)
Q Consensus       115 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~  186 (263)
                      ++|...|-++-... -+++.....+|..|. ..+.++++..+.+++++.+.    +++++..|+.++..+|+++.|-
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            56666665554422 245677777777665 56888899999998887543    4788888999999999988874

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.44  E-value=0.073  Score=27.53  Aligned_cols=32  Identities=16%  Similarity=0.100  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHH--HHHhhCCC
Q 024712          167 DAWRELAEIYVSLQMYKQAAFCYE--ELILSQPT  198 (263)
Q Consensus       167 ~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~  198 (263)
                      +.|+.+|..+..+|++++|+..|+  -+..++|.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            345566666666666666666633  55544443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.43  E-value=0.052  Score=28.77  Aligned_cols=29  Identities=28%  Similarity=0.344  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLET  161 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  161 (263)
                      .++.++|.++...|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45677888888888888888888887765

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.40  E-value=0.14  Score=40.26  Aligned_cols=59  Identities=20%  Similarity=0.101  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712          168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (263)
Q Consensus       168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a  229 (263)
                      ++..++..+...|+++.++..+++.+..+|.+-..|..+-..|+..|+   ...|+..|++.
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~---~~~ai~~y~~l  213 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR---QSAAIRAYRQL  213 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---chHHHHHHHHH
Confidence            344445555555555555555555555555555555555555555555   44444444443

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.32  E-value=0.32  Score=45.04  Aligned_cols=126  Identities=14%  Similarity=0.049  Sum_probs=91.1

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc----C---ChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712          104 EGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQ----G---NFPTAIEWLNKYLETFMADHDAWRELA  173 (263)
Q Consensus       104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----g---~~~~A~~~~~~~l~~~p~~~~~~~~la  173 (263)
                      ..+++...+.|+.|+..|+++-..-|...   .+.+..|.....+    |   .+++|+..|++.- -.|.-|--|...|
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence            34566777899999999999999888764   5667777766543    3   3666777776553 3456666678888


Q ss_pred             HHHHhcccHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          174 EIYVSLQMYKQAAFCYEELILSQPTVPLY-------HLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .+|...|+|++-+++|.-+++..|..|.+       .+++-++.+...     ..|..+.--++...|.
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  623 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR-----REALVFMLLALWIAPE  623 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhCcc
Confidence            99999999999999999999999988753       333444443333     3566677677776665

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.27  E-value=0.21  Score=38.83  Aligned_cols=64  Identities=16%  Similarity=0.078  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          169 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       169 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ..++=..+...++++.|..+.++.+.++|.++.-+.-.|-+|...|.   +.-|++.++..++..|+
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c---~~vAl~dl~~~~~~~P~  247 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC---YHVALEDLSYFVEHCPD  247 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC---chhhHHHHHHHHHhCCC
Confidence            34455667788899999999999999999999888999999999999   99999999998888887

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=95.12  E-value=1.9  Score=37.04  Aligned_cols=152  Identities=11%  Similarity=-0.035  Sum_probs=108.5

Q ss_pred             hHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCChhHHHHHHHH
Q 024712           80 LDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI-AKAQGNFPTAIEWLNK  157 (263)
Q Consensus        80 ~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~  157 (263)
                      ++....++++++.....++ -++..+-..-.+..-.+.|..+|.++-+..-....++..-|.+ |...++..-|...|+-
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL  426 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL  426 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence            5566677777777654333 3455555666666777888899999887543333333333322 3457899999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCC-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          158 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--QPTV-PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       158 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      .+..+++++..-......+...|+-..|..+|++++..  .|+. ..+|..+-..-..-|+   ...+++.=++-....|
T Consensus       427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd---L~si~~lekR~~~af~  503 (656)
T KOG1914|consen  427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD---LNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhcc
Confidence            99999999998888888999999999999999999987  4333 4577777777778888   7766665555443333

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.07  E-value=0.2  Score=39.41  Aligned_cols=64  Identities=22%  Similarity=0.161  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  195 (263)
                      ..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|.+.-+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3567778888889999999999999999999999999999999999999999999999887654

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=94.98  E-value=0.19  Score=41.49  Aligned_cols=85  Identities=14%  Similarity=0.099  Sum_probs=43.9

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHhcC--------CCCH----------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH
Q 024712          105 GILLEAKGLWAEAEKAYSSLLEDN--------PLDP----------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH  166 (263)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  166 (263)
                      |..+++.++|..|..-|+.++++-        |..+          .+-..+..||...++.+-|+....+.+.++|..+
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            344555566666666666666531        1110          1223445555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhcccHHHHHHHH
Q 024712          167 DAWRELAEIYVSLQMYKQAAFCY  189 (263)
Q Consensus       167 ~~~~~la~~~~~~g~~~~A~~~~  189 (263)
                      .-+...|.++..+.+|.+|...+
T Consensus       263 rnHLrqAavfR~LeRy~eAarSa  285 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSA  285 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555554444

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.96  E-value=1.9  Score=36.31  Aligned_cols=161  Identities=13%  Similarity=0.045  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc------------------
Q 024712           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED------------------  127 (263)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------  127 (263)
                      +|..-.......++-+.|+....+++...|   .....++.+|....+-+..-.+|++++..                  
T Consensus       304 vw~dys~Y~~~isd~q~al~tv~rg~~~sp---sL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~  380 (660)
T COG5107         304 VWFDYSEYLIGISDKQKALKTVERGIEMSP---SLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDN  380 (660)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHhcccCCC---chheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccC
Confidence            333334444556677777776666654444   35566677776666655555555554331                  


Q ss_pred             CCCC-HH-----------HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhcccHHHHHHHHHHHHh
Q 024712          128 NPLD-PV-----------LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELIL  194 (263)
Q Consensus       128 ~p~~-~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~  194 (263)
                      +|.. +.           ++..+...-.+..-.+.|...|-++-+..-....++..-|.+ +...|++.-|...|+-.+.
T Consensus       381 N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~  460 (660)
T COG5107         381 NFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLL  460 (660)
T ss_pred             CccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHH
Confidence            1100 11           111112222222334455555555544332333444443433 4457888888888988888


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          195 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       195 ~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      ..|+++......-..+...++   -..|...|+.++..
T Consensus       461 ~f~d~~~y~~kyl~fLi~ind---e~naraLFetsv~r  495 (660)
T COG5107         461 KFPDSTLYKEKYLLFLIRIND---EENARALFETSVER  495 (660)
T ss_pred             hCCCchHHHHHHHHHHHHhCc---HHHHHHHHHHhHHH
Confidence            888888777777777778888   78888888877654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.85  E-value=0.43  Score=29.49  Aligned_cols=51  Identities=18%  Similarity=0.156  Sum_probs=25.8

Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH---HHHHhcccHHHHHHHHHH
Q 024712          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELA---EIYVSLQMYKQAAFCYEE  191 (263)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~~  191 (263)
                      -++..++..+|+..+.++++..++.++-+..+|   .++...|+|.+++.+-.+
T Consensus        15 kLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen   15 KLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555566666666655555544443333   334455555555554433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=94.79  E-value=2.8  Score=37.40  Aligned_cols=145  Identities=15%  Similarity=0.019  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHhCC----CcHHHHHHHHHHHH-HcCcHHHHHHHHHHHHhcCCC--CHH----HHHHHHHHHHHcCChh
Q 024712           81 DVAKDCIKVLQKQFP----ESKRVGRLEGILLE-AKGLWAEAEKAYSSLLEDNPL--DPV----LHKRRVAIAKAQGNFP  149 (263)
Q Consensus        81 ~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~--~~~----~~~~l~~~~~~~g~~~  149 (263)
                      ..|+++++.+++..+    ....+.+.+|.+++ ...+++.|..++.+++.+...  ..+    +...++.++.+.+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            457888888886443    24567778888887 678999999999999876533  222    3445678887777666


Q ss_pred             HHHHHHHHHHHhcCC---CHHHH-HHH--HHHHHhcccHHHHHHHHHHHHhhC--CCCHHHH----HHHHHHHHhcCCCC
Q 024712          150 TAIEWLNKYLETFMA---DHDAW-REL--AEIYVSLQMYKQAAFCYEELILSQ--PTVPLYH----LAYADVLYTLGGVD  217 (263)
Q Consensus       150 ~A~~~~~~~l~~~p~---~~~~~-~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~----~~la~~~~~~g~~~  217 (263)
                       |...+++.++....   ....| +.+  .......+++..|+..++......  +.++.+.    ...+.+....+.  
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~--  194 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS--  194 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC--
Confidence             99999999886544   22222 222  223333479999999999988765  3554432    223455556666  


Q ss_pred             cHHHHHHHHHHh
Q 024712          218 NILLAKKYYAST  229 (263)
Q Consensus       218 ~~~~A~~~~~~a  229 (263)
                       .+.+++...++
T Consensus       195 -~~d~~~~l~~~  205 (608)
T PF10345_consen  195 -PDDVLELLQRA  205 (608)
T ss_pred             -chhHHHHHHHH
Confidence             55666666655

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=94.79  E-value=1.3  Score=39.54  Aligned_cols=141  Identities=16%  Similarity=0.094  Sum_probs=82.3

Q ss_pred             cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 024712           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN  156 (263)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  156 (263)
                      ..++.+|+.+++.+...+. ....+-..+.-|...|+|+-|.++|.++-        ....-..+|.+.|+|..|....+
T Consensus       745 akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~  815 (1636)
T KOG3616|consen  745 AKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAE  815 (1636)
T ss_pred             hhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHH
Confidence            3444455554444433322 12234456777888899999988877642        22344567778889988887777


Q ss_pred             HHHHhcCCC-HHHHHHHHHHHHhcccH-------------HHHHHHHHHH------H----hhCCCC-HHHHHHHHHHHH
Q 024712          157 KYLETFMAD-HDAWRELAEIYVSLQMY-------------KQAAFCYEEL------I----LSQPTV-PLYHLAYADVLY  211 (263)
Q Consensus       157 ~~l~~~p~~-~~~~~~la~~~~~~g~~-------------~~A~~~~~~a------l----~~~p~~-~~~~~~la~~~~  211 (263)
                      ++..  |.. ...+...+.-+-..|+|             +.|+..|.+.      +    +..|+. ...+..+|.-+.
T Consensus       816 e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e  893 (1636)
T KOG3616|consen  816 ECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELE  893 (1636)
T ss_pred             HhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHH
Confidence            6542  322 22333334444444444             4444444432      1    122332 457788898899


Q ss_pred             hcCCCCcHHHHHHHHHHhhc
Q 024712          212 TLGGVDNILLAKKYYASTID  231 (263)
Q Consensus       212 ~~g~~~~~~~A~~~~~~al~  231 (263)
                      ..|+   .+.|..+|.++-.
T Consensus       894 ~~g~---lkaae~~flea~d  910 (1636)
T KOG3616|consen  894 AEGD---LKAAEEHFLEAGD  910 (1636)
T ss_pred             hccC---hhHHHHHHHhhhh
Confidence            9999   8888888877643

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=94.79  E-value=3.2  Score=41.98  Aligned_cols=138  Identities=14%  Similarity=0.087  Sum_probs=100.5

Q ss_pred             ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------
Q 024712           58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------  131 (263)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------  131 (263)
                      ..+.....+|.+.|.+....|.++.|...+-.+.+..  -+.+....|..+...|+-..|+.++++.++.+-.+      
T Consensus      1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred             cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence            4566788999999999999999999999988887755  56788999999999999999999999999754221      


Q ss_pred             --H---------HHHHHHHHHHHHcCCh--hHHHHHHHHHHHhcCCCHHHHHHHHHHHH------------hcccHHH--
Q 024712          132 --P---------VLHKRRVAIAKAQGNF--PTAIEWLNKYLETFMADHDAWRELAEIYV------------SLQMYKQ--  184 (263)
Q Consensus       132 --~---------~~~~~l~~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~------------~~g~~~~--  184 (263)
                        +         .+...++......|++  ..-+..|..+.+..|...+-++.+|..|.            ..|++..  
T Consensus      1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l 1821 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLL 1821 (2382)
T ss_pred             ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHH
Confidence              1         1233334444445553  45678889999999977777777775542            3355555  


Q ss_pred             -HHHHHHHHHhhCC
Q 024712          185 -AAFCYEELILSQP  197 (263)
Q Consensus       185 -A~~~~~~al~~~p  197 (263)
                       ++..|.+++..+.
T Consensus      1822 ~~~~~~~~sl~yg~ 1835 (2382)
T KOG0890|consen 1822 KAIYFFGRALYYGN 1835 (2382)
T ss_pred             HHHHHHHHHHHhcc
Confidence             5556667765543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.64  E-value=1.5  Score=37.24  Aligned_cols=131  Identities=15%  Similarity=-0.024  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  146 (263)
                      ...++..+.+.|-.+.|+.+.        .++...+   .+..+.|+.+.|.+..+     ..+++..|..+|.....+|
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~rF---eLAl~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g  361 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFV--------TDPDHRF---ELALQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQG  361 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHS--------S-HHHHH---HHHHHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHhhc--------CChHHHh---HHHHhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcC
Confidence            444566666778888777664        2444433   45577899998876432     3447789999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 024712          147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY  226 (263)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~  226 (263)
                      +++-|..+|+++-.        +..|..+|...|+-+.-.+....+......+     ..-.+++.+|+   .++.++.+
T Consensus       362 ~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n-----~af~~~~~lgd---~~~cv~lL  425 (443)
T PF04053_consen  362 NIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDIN-----IAFQAALLLGD---VEECVDLL  425 (443)
T ss_dssp             BHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HH-----HHHHHHHHHT----HHHHHHHH
T ss_pred             CHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCHH-----HHHHHHHHcCC---HHHHHHHH
Confidence            99999999988632        3456667777777666555555554433221     11134555677   66666666


Q ss_pred             HHh
Q 024712          227 AST  229 (263)
Q Consensus       227 ~~a  229 (263)
                      .++
T Consensus       426 ~~~  428 (443)
T PF04053_consen  426 IET  428 (443)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.52  E-value=0.3  Score=31.58  Aligned_cols=27  Identities=11%  Similarity=0.213  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHh
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLET  161 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~  161 (263)
                      ...++.++...|++++|+..+++++++
T Consensus        44 ll~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   44 LLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            344555555555555555555555543

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=94.46  E-value=1.4  Score=32.34  Aligned_cols=149  Identities=12%  Similarity=0.051  Sum_probs=94.7

Q ss_pred             cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----cCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----C
Q 024712           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA-----KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-----G  146 (263)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----g  146 (263)
                      ..+|++|.++|+.-.+.+.. +...+-+|..++.     .++...|+..+..+-.  -+.+.+-..+|.++...     +
T Consensus        48 ~knF~~A~kv~K~nCden~y-~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~  124 (248)
T KOG4014|consen   48 QKNFQAAVKVFKKNCDENSY-PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA  124 (248)
T ss_pred             HHHHHHHHHHHHhcccccCC-cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence            46788888888776665443 2333444444432     3577888888888776  44566666777666532     2


Q ss_pred             --ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh------------------------cccHHHHHHHHHHHHhhCCCCH
Q 024712          147 --NFPTAIEWLNKYLETFMADHDAWRELAEIYVS------------------------LQMYKQAAFCYEELILSQPTVP  200 (263)
Q Consensus       147 --~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------------------------~g~~~~A~~~~~~al~~~p~~~  200 (263)
                        +..+|..++.++..+.  +..+.+.|...+..                        ..+.+.|.++--++-+++  ++
T Consensus       125 dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~  200 (248)
T KOG4014|consen  125 DPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IP  200 (248)
T ss_pred             CCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--Ch
Confidence              3667888888887653  44455555544443                        356777877777776654  56


Q ss_pred             HHHHHHHHHHHhcCC--CCcHHHHHHHHHHhhccC
Q 024712          201 LYHLAYADVLYTLGG--VDNILLAKKYYASTIDLT  233 (263)
Q Consensus       201 ~~~~~la~~~~~~g~--~~~~~~A~~~~~~al~~~  233 (263)
                      .+..++.+.| .+|+  ..+.++|..+-.++.++.
T Consensus       201 ~aCAN~SrMy-klGDGv~Kde~~Aekyk~rA~e~~  234 (248)
T KOG4014|consen  201 QACANVSRMY-KLGDGVPKDEDQAEKYKDRAKEIM  234 (248)
T ss_pred             HHHhhHHHHH-HccCCCCccHHHHHHHHHHHHHHH
Confidence            7777777766 4444  344778888877777663

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.45  E-value=0.38  Score=31.12  Aligned_cols=56  Identities=16%  Similarity=-0.003  Sum_probs=45.3

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCC----c-----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Q 024712           73 AAMDCQCLDVAKDCIKVLQKQFPE----S-----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDN  128 (263)
Q Consensus        73 ~~~~~~~~~~A~~~~~~~~~~~p~----~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  128 (263)
                      ..++.|++..|++.+.+..+....    .     ..+...+|.++...|++++|+..+++++.+.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            346789999999988888875431    1     3456778999999999999999999999864

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=94.31  E-value=1.6  Score=36.13  Aligned_cols=129  Identities=13%  Similarity=0.048  Sum_probs=89.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCC-C--------cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----CCC-CHHHH
Q 024712           71 SIAAMDCQCLDVAKDCIKVLQKQFP-E--------SKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPL-DPVLH  135 (263)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p-~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~-~~~~~  135 (263)
                      ......++++.+|..+-+..+.... .        .+..++.+..++...|+...-...+...+..     +.. .....
T Consensus       133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLi  212 (493)
T KOG2581|consen  133 LLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLI  212 (493)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHH
Confidence            3445567899999888777665321 1        2345667777888888866655555555442     111 12345


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHH--hcCCC--HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712          136 KRRVAIAKAQGNFPTAIEWLNKYLE--TFMAD--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  199 (263)
Q Consensus       136 ~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  199 (263)
                      +.+-..|...+.++.|.....+..-  ...++  +...+.+|.+...+++|..|.+++-+|+...|.+
T Consensus       213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            5667788888899999887777651  12222  3456789999999999999999999999999975

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.25  E-value=3.3  Score=35.91  Aligned_cols=137  Identities=19%  Similarity=0.081  Sum_probs=93.0

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CC----------------CcHHHHHH---HHHHHHHcCcHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ-----FP----------------ESKRVGRL---EGILLEAKGLWA  115 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p----------------~~~~~~~~---~a~~~~~~~~~~  115 (263)
                      .|-....+.+++.++..+|+.+-|..++++++=.     +|                .+-..+..   .-..+.+.|=+.
T Consensus       280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r  359 (665)
T KOG2422|consen  280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR  359 (665)
T ss_pred             CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence            5777888999999999999999888887776531     22                11122221   222344568899


Q ss_pred             HHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HcCChhHHHHHHHHH-----HHhcCCCHHHHHHHHHHHHhccc---HHHH
Q 024712          116 EAEKAYSSLLEDNPL-DPVLHKRRVAIAK-AQGNFPTAIEWLNKY-----LETFMADHDAWRELAEIYVSLQM---YKQA  185 (263)
Q Consensus       116 ~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-----l~~~p~~~~~~~~la~~~~~~g~---~~~A  185 (263)
                      .|.++.+-+++++|. +|.+...+..+|. +..+|.=-+..++.+     +...|+-+. -..+|..|.....   -+.|
T Consensus       360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~~~~~~rqsa  438 (665)
T KOG2422|consen  360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGY-SLALARFFLRKNEEDDRQSA  438 (665)
T ss_pred             HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchH-HHHHHHHHHhcCChhhHHHH
Confidence            999999999999998 8766655555553 455666666666655     334455432 2456666666554   5678


Q ss_pred             HHHHHHHHhhCC
Q 024712          186 AFCYEELILSQP  197 (263)
Q Consensus       186 ~~~~~~al~~~p  197 (263)
                      ...+.+|+...|
T Consensus       439 ~~~l~qAl~~~P  450 (665)
T KOG2422|consen  439 LNALLQALKHHP  450 (665)
T ss_pred             HHHHHHHHHhCc
Confidence            889999998877

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=94.21  E-value=2.6  Score=35.16  Aligned_cols=88  Identities=10%  Similarity=-0.105  Sum_probs=67.4

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCC--------C-----c-----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH
Q 024712           71 SIAAMDCQCLDVAKDCIKVLQKQFP--------E-----S-----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP  132 (263)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p--------~-----~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~  132 (263)
                      |..++++++|..|..-|..+++...        .     +     ..+...+..||.++++.+-|+....+.+..+|...
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            4556777777777777777776432        1     1     12334678899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHH
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKY  158 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~  158 (263)
                      ..+...+.+...+.+|.+|...+--+
T Consensus       263 rnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888887655443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.14  E-value=0.29  Score=38.65  Aligned_cols=62  Identities=18%  Similarity=0.181  Sum_probs=45.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712          117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  178 (263)
Q Consensus       117 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  178 (263)
                      |..+|.+|..+.|++...++.+|.+....|+.-.|+-+|-+++-...-.+.+..+|...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            56788888888888888888888888888888888888888876544446677777777665

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=94.13  E-value=0.27  Score=38.62  Aligned_cols=59  Identities=19%  Similarity=0.130  Sum_probs=51.9

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712          169 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (263)
Q Consensus       169 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al  230 (263)
                      +...+..|...|.+.+|+.+.+++++++|-+...+..+..++...|+   --.+.++|++.-
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD---~is~~khyerya  340 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD---EISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc---chhhhhHHHHHH
Confidence            34456778889999999999999999999999999999999999999   888888887753

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.04  E-value=1.2  Score=30.08  Aligned_cols=90  Identities=14%  Similarity=0.027  Sum_probs=65.5

Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHhcccHHHHHHHHHHHHh-------hCCCCH
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMAD------------HDAWRELAEIYVSLQMYKQAAFCYEELIL-------SQPTVP  200 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~  200 (263)
                      .-....|.+++|...+.++++....-            .-.+-.|+..+..+|+|++++....+++.       ++.+..
T Consensus        17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG   96 (144)
T PF12968_consen   17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG   96 (144)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence            33445688999999999999764222            33556788899999999999888888874       344443


Q ss_pred             H----HHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          201 L----YHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       201 ~----~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      .    +.+..|..+..+|+   .++|...|+.+-+.
T Consensus        97 klWIaaVfsra~Al~~~Gr---~~eA~~~fr~agEM  129 (144)
T PF12968_consen   97 KLWIAAVFSRAVALEGLGR---KEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHH
Confidence            3    44567889999999   99999999998654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.92  E-value=0.12  Score=27.06  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=11.7

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHh
Q 024712          169 WRELAEIYVSLQMYKQAAFCYEELIL  194 (263)
Q Consensus       169 ~~~la~~~~~~g~~~~A~~~~~~al~  194 (263)
                      +..||.+-...++|++|+.-|+++++
T Consensus         4 ~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    4 YDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=93.90  E-value=1.8  Score=36.02  Aligned_cols=60  Identities=15%  Similarity=0.020  Sum_probs=45.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH--HH--HHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712           68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR--VG--RLEGILLEAKGLWAEAEKAYSSLLED  127 (263)
Q Consensus        68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~--~~~a~~~~~~~~~~~A~~~~~~~~~~  127 (263)
                      ...+..++..++|..|..++..+...-|.+..  .+  ...|..+...-++++|.+.++..+..
T Consensus       135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            35677888999999999999999987444333  22  23455566778999999999998875

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=93.89  E-value=1.2  Score=39.88  Aligned_cols=133  Identities=17%  Similarity=0.157  Sum_probs=80.5

Q ss_pred             cCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc---------CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712           77 CQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (263)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  146 (263)
                      .|+-++|+...-.+++.. |-.++.+.+-|++|..+         +..+.|+++|+++++..|..... .+++.++...|
T Consensus       256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG  334 (1226)
T KOG4279|consen  256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAG  334 (1226)
T ss_pred             CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhh
Confidence            488899999888888865 45677777778777543         56788999999999999875433 45666666666


Q ss_pred             C-hhHHHHHHHHHHHhcC-----C---CHHHHHHHHHHH---HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024712          147 N-FPTAIEWLNKYLETFM-----A---DHDAWRELAEIY---VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (263)
Q Consensus       147 ~-~~~A~~~~~~~l~~~p-----~---~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (263)
                      . ++...+.-.-.+.++.     .   ....|...|..+   ...++|.+|+...+..+++.|-.+.....+..+.
T Consensus       335 ~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni~  410 (1226)
T KOG4279|consen  335 EHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENIL  410 (1226)
T ss_pred             hhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHHH
Confidence            4 3333222222222210     0   011122222222   2346788888888888888776555444444433

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.89  E-value=0.46  Score=37.37  Aligned_cols=54  Identities=17%  Similarity=0.022  Sum_probs=29.2

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 024712          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE  191 (263)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  191 (263)
                      .+..|...|.+.+|++..++++..+|-+...+..+-.++...|+--.+++.|++
T Consensus       285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            344455555555555555555555555555555555555555554444444443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.71  E-value=1.5  Score=32.66  Aligned_cols=72  Identities=13%  Similarity=-0.023  Sum_probs=55.1

Q ss_pred             hhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHhcCCCCcHHHH
Q 024712          148 FPTAIEWLNKYLET-FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT----VPLYHLAYADVLYTLGGVDNILLA  222 (263)
Q Consensus       148 ~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~~~~A  222 (263)
                      -++|...|-++-.. .-++++..+.||..|. ..+.++|+.++.+++++.+.    ++.++..|+.+++..|+   ++.|
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~---~e~A  197 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN---YEQA  197 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc---hhhh
Confidence            35566655544321 2356888889998876 56789999999999988643    48899999999999999   9887


Q ss_pred             H
Q 024712          223 K  223 (263)
Q Consensus       223 ~  223 (263)
                      -
T Consensus       198 Y  198 (203)
T PF11207_consen  198 Y  198 (203)
T ss_pred             h
Confidence            4

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.67  E-value=0.13  Score=24.27  Aligned_cols=19  Identities=32%  Similarity=0.076  Sum_probs=8.1

Q ss_pred             HHHHHHHHHcCcHHHHHHH
Q 024712          102 RLEGILLEAKGLWAEAEKA  120 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~  120 (263)
                      ..+|.++...|++++|...
T Consensus         5 ~~la~~~~~~G~~~eA~~~   23 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERL   23 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHH
Confidence            3344444444444444433

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=93.50  E-value=5.4  Score=35.70  Aligned_cols=152  Identities=15%  Similarity=0.091  Sum_probs=100.1

Q ss_pred             HHHHHHHHHhcCcccccccCc-chHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCC--CcH----HHHHHHHHHHHHcC
Q 024712           41 KVLRHGLSILNDPKKRSALGP-DVWTLYEQVSIAAM-DCQCLDVAKDCIKVLQKQFP--ESK----RVGRLEGILLEAKG  112 (263)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p--~~~----~~~~~~a~~~~~~~  112 (263)
                      ..+..+..-+.-......++| ....+..++|.+++ ...+++.|..++++++....  +..    .+...++.++.+.+
T Consensus        35 kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~  114 (608)
T PF10345_consen   35 KLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN  114 (608)
T ss_pred             HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC
Confidence            334444443322222345555 47778889999988 67999999999999987763  222    23456788888888


Q ss_pred             cHHHHHHHHHHHHhcCCC---C-HHHHHHHH--HHHHHcCChhHHHHHHHHHHHhc--CCCHHHH----HHHHHHHHhcc
Q 024712          113 LWAEAEKAYSSLLEDNPL---D-PVLHKRRV--AIAKAQGNFPTAIEWLNKYLETF--MADHDAW----RELAEIYVSLQ  180 (263)
Q Consensus       113 ~~~~A~~~~~~~~~~~p~---~-~~~~~~l~--~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~----~~la~~~~~~g  180 (263)
                      ... |...+++.++....   . ....+.+.  ......+++..|+..++......  +.++.+.    ...+.+....+
T Consensus       115 ~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~  193 (608)
T PF10345_consen  115 PKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG  193 (608)
T ss_pred             HHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC
Confidence            776 99999999886443   1 22222222  22333379999999999988765  4554432    23456666778


Q ss_pred             cHHHHHHHHHHHH
Q 024712          181 MYKQAAFCYEELI  193 (263)
Q Consensus       181 ~~~~A~~~~~~al  193 (263)
                      ..+++++..+++.
T Consensus       194 ~~~d~~~~l~~~~  206 (608)
T PF10345_consen  194 SPDDVLELLQRAI  206 (608)
T ss_pred             CchhHHHHHHHHH
Confidence            7888888888774

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=93.49  E-value=6  Score=36.23  Aligned_cols=201  Identities=17%  Similarity=0.017  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------Cc
Q 024712           24 AWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ES   97 (263)
Q Consensus        24 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~   97 (263)
                      .+..++..-.....+++....++...+..  -.....-....++..++.+..-.|++++|..+...+.+..-      -.
T Consensus       459 e~~aL~a~val~~~~~e~a~~lar~al~~--L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~  536 (894)
T COG2909         459 EFQALRAQVALNRGDPEEAEDLARLALVQ--LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLA  536 (894)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHH
Confidence            46667777777888888888888887765  11111223344555678888889999999999988877532      12


Q ss_pred             HHHHHHHHHHHHHcCc--HHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh----cCCCHH
Q 024712           98 KRVGRLEGILLEAKGL--WAEAEKAYSSLLE----DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET----FMADHD  167 (263)
Q Consensus        98 ~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~  167 (263)
                      ..+....+.++...|+  +.+....+...-.    ..|.+.......+.++..--+.+.+.....+.++.    .|....
T Consensus       537 ~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~  616 (894)
T COG2909         537 LWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLL  616 (894)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhH
Confidence            3344556778888883  3444444443332    23444444444444444433466666666665554    233322


Q ss_pred             H---HHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-----HHHHHHHH--HHHHhcCCCCcHHHHHHHHHHh
Q 024712          168 A---WRELAEIYVSLQMYKQAAFCYEELILSQPTV-----PLYHLAYA--DVLYTLGGVDNILLAKKYYAST  229 (263)
Q Consensus       168 ~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la--~~~~~~g~~~~~~~A~~~~~~a  229 (263)
                      .   .+.++.+++..|++++|...+.+...+-.+.     ..+.....  ......|+   ...|.....+.
T Consensus       617 ~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~---~~~a~~~l~~s  685 (894)
T COG2909         617 SRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGD---KELAAEWLLKS  685 (894)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCC---HHHHHHHHHhc
Confidence            2   2478999999999999999988876543222     12222222  23334577   88887777764

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.41  E-value=6.9  Score=36.70  Aligned_cols=154  Identities=14%  Similarity=0.001  Sum_probs=94.8

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC-cHHHHH------------------------HHHHHHHHcCcH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--PE-SKRVGR------------------------LEGILLEAKGLW  114 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~------------------------~~a~~~~~~~~~  114 (263)
                      +++..|........+.|.|++-++++..+-+.-  |. +....+                        ..|+-++..|.|
T Consensus      1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y 1210 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMY 1210 (1666)
T ss_pred             CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhh
Confidence            556677778888888899998888887665543  21 111111                        123333444445


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc---------------------C----CCHHHH
Q 024712          115 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF---------------------M----ADHDAW  169 (263)
Q Consensus       115 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---------------------p----~~~~~~  169 (263)
                      +.|.-+|..        ..-|..++..+...|+|..|....+++-...                     .    -.++-+
T Consensus      1211 ~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeL 1282 (1666)
T KOG0985|consen 1211 EAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADEL 1282 (1666)
T ss_pred             HHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhH
Confidence            444443332        2335567777777788877777776653210                     0    012234


Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 024712          170 RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA  227 (263)
Q Consensus       170 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~  227 (263)
                      -.+...|...|-|++-+..++.++-+...+...+..+|.+|.+-.    +++-.++++
T Consensus      1283 eeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk----p~km~EHl~ 1336 (1666)
T KOG0985|consen 1283 EELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK----PEKMMEHLK 1336 (1666)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC----HHHHHHHHH
Confidence            456777888888999999998888888777777888887776654    344444443

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=93.36  E-value=1  Score=42.53  Aligned_cols=138  Identities=14%  Similarity=0.038  Sum_probs=104.7

Q ss_pred             cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-
Q 024712           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-  127 (263)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-  127 (263)
                      ..+.|+....|..++..+...++.++|+..-.++.-..        |+....+..++...+..++...|+..+.++..+ 
T Consensus       966 ~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen  966 GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred             hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence            44577888899999999999999999998877665432        345566778888888888888899988888764 


Q ss_pred             -------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC-----C---CHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712          128 -------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM-----A---DHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (263)
Q Consensus       128 -------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-----~---~~~~~~~la~~~~~~g~~~~A~~~~~~a  192 (263)
                             +|.-.....++..++...++++.|+.+.+.|+...-     .   ....+..++..+...+++..|....+..
T Consensus      1046 ~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1046 LLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred             ccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence                   344445667888888888999999999999998532     2   2345566777777778887777766655


Q ss_pred             Hh
Q 024712          193 IL  194 (263)
Q Consensus       193 l~  194 (263)
                      ..
T Consensus      1126 ~~ 1127 (1236)
T KOG1839|consen 1126 YG 1127 (1236)
T ss_pred             HH
Confidence            53

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.32  E-value=0.44  Score=37.62  Aligned_cols=62  Identities=13%  Similarity=0.016  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712           83 AKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA  144 (263)
Q Consensus        83 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  144 (263)
                      |..+|.++....|++...+..+|.++...|+.=.|+=+|-+++-...-.+.+..++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999998888887654457788888888776

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=93.28  E-value=0.33  Score=23.81  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=11.3

Q ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHH
Q 024712          148 FPTAIEWLNKYLETFMADHDAWREL  172 (263)
Q Consensus       148 ~~~A~~~~~~~l~~~p~~~~~~~~l  172 (263)
                      .+.+...|++++...|.++.+|...
T Consensus         3 ~~~~r~i~e~~l~~~~~~~~~W~~y   27 (33)
T smart00386        3 IERARKIYERALEKFPKSVELWLKY   27 (33)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHH
Confidence            3444444444444444444444433

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=93.22  E-value=3.1  Score=32.15  Aligned_cols=162  Identities=18%  Similarity=0.152  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH-cCcHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAK  143 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~  143 (263)
                      +..+|..+-..|++++.+.++++++..+|. +..-...++.+|-. .|....+...+........... .....+..-+.
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk   83 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK   83 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence            345788888999999999999999999874 34444555555533 3555556655555544332221 11111111111


Q ss_pred             Hc------CChhHHHHHHHHHHHhcCCCHH----HHHHHHHHHHh-----cc-----cHHHHHHHHHHHHh-----hCCC
Q 024712          144 AQ------GNFPTAIEWLNKYLETFMADHD----AWRELAEIYVS-----LQ-----MYKQAAFCYEELIL-----SQPT  198 (263)
Q Consensus       144 ~~------g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~-----~g-----~~~~A~~~~~~al~-----~~p~  198 (263)
                      ..      .--.+.+......+--...++.    .+-..|..|..     .|     -.+.|...|++|+.     +.|.
T Consensus        84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~  163 (236)
T PF00244_consen   84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPT  163 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCC
Confidence            10      0011222222222211222222    12234444422     12     23678888888774     4677


Q ss_pred             CHH---HHHHHHHHHHh-cCCCCcHHHHHHHHHHhhc
Q 024712          199 VPL---YHLAYADVLYT-LGGVDNILLAKKYYASTID  231 (263)
Q Consensus       199 ~~~---~~~~la~~~~~-~g~~~~~~~A~~~~~~al~  231 (263)
                      +|.   ...+.+..++. .|+   .++|+...++++.
T Consensus       164 ~p~rLgl~LN~svF~yei~~~---~~~A~~ia~~afd  197 (236)
T PF00244_consen  164 HPLRLGLALNYSVFYYEILND---PEKAIEIAKQAFD  197 (236)
T ss_dssp             SHHHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHH
Confidence            765   34556655544 688   8888877777664

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.15  E-value=0.2  Score=23.65  Aligned_cols=21  Identities=29%  Similarity=0.252  Sum_probs=10.6

Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHH
Q 024712          203 HLAYADVLYTLGGVDNILLAKKYY  226 (263)
Q Consensus       203 ~~~la~~~~~~g~~~~~~~A~~~~  226 (263)
                      ...+|.++...|+   +++|...+
T Consensus         4 ~~~la~~~~~~G~---~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGD---PDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCC---HHHHHHHH
Confidence            4445555555555   55555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.15  E-value=0.5  Score=24.41  Aligned_cols=20  Identities=15%  Similarity=0.117  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHcCChhHHHHH
Q 024712          135 HKRRVAIAKAQGNFPTAIEW  154 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~  154 (263)
                      +..+|..+...|++++|+..
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHH
Confidence            34444444555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=93.13  E-value=2.4  Score=37.70  Aligned_cols=24  Identities=4%  Similarity=-0.028  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHH
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNK  157 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~  157 (263)
                      ++.++|..+.....|++|.++|..
T Consensus       798 A~r~ig~~fa~~~~We~A~~yY~~  821 (1189)
T KOG2041|consen  798 AFRNIGETFAEMMEWEEAAKYYSY  821 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444445444444444444444443

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=93.12  E-value=6  Score=40.22  Aligned_cols=147  Identities=13%  Similarity=0.045  Sum_probs=98.2

Q ss_pred             cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHH
Q 024712           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL  134 (263)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  134 (263)
                      .+.++|.........+++..++--|.+-.-......|    ...+.|...|.+....|.++.|...+-++.+..  -+.+
T Consensus      1627 ~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i 1704 (2382)
T KOG0890|consen 1627 NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEI 1704 (2382)
T ss_pred             ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchH
Confidence            3445666555555444443333222222212222232    457889999999999999999999999888866  4677


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-----------------HHHHHHHHHHHHhcccH--HHHHHHHHHHHhh
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-----------------HDAWRELAEIYVSLQMY--KQAAFCYEELILS  195 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----------------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~  195 (263)
                      +...|..+...|+...|+..+++.++.+-.+                 ..+...++......|++  ++-++.|+.+...
T Consensus      1705 ~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai 1784 (2382)
T KOG0890|consen 1705 VLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI 1784 (2382)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            8889999999999999999999999764222                 11233344444455554  3567889999999


Q ss_pred             CCCCHHHHHHHH
Q 024712          196 QPTVPLYHLAYA  207 (263)
Q Consensus       196 ~p~~~~~~~~la  207 (263)
                      .|.....++.+|
T Consensus      1785 l~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1785 LPEWEDKHYHLG 1796 (2382)
T ss_pred             cccccCceeeHH
Confidence            996655555555

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.97  E-value=0.18  Score=26.41  Aligned_cols=30  Identities=7%  Similarity=0.006  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712          201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       201 ~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~  233 (263)
                      .++..||.+-...++   |++|+..|++++++.
T Consensus         2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHH
Confidence            467889999999999   999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=92.84  E-value=1.4  Score=27.26  Aligned_cols=60  Identities=7%  Similarity=-0.093  Sum_probs=46.1

Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH---HHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          170 RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL---AYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       170 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      ..-|.-++..++.++|+..+.++++..++.+.-+.   .+..+|...|+   +++.+.+-.+=+++
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk---yr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK---YREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            44566667889999999999999999888766544   45567888899   99888876654444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.60  E-value=4.2  Score=32.00  Aligned_cols=163  Identities=13%  Similarity=0.038  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--------cCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CChhH
Q 024712           81 DVAKDCIKVLQKQFPESKRVGRLEGILLEA--------KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ--GNFPT  150 (263)
Q Consensus        81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~  150 (263)
                      ..|++.-...++.+|..-.++...-.+...        ..-++.-+.++..++..+|.+..+|...-.++..-  .++..
T Consensus        49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r  128 (328)
T COG5536          49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR  128 (328)
T ss_pred             HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence            356666666677777655555544443333        12245566778888888888888877766666544  45666


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHH------HhcccHHHHHHHHHHHHhhCCCCHHHHHHH---HHHHHhcCCCC---c
Q 024712          151 AIEWLNKYLETFMADHDAWRELAEIY------VSLQMYKQAAFCYEELILSQPTVPLYHLAY---ADVLYTLGGVD---N  218 (263)
Q Consensus       151 A~~~~~~~l~~~p~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~~~---~  218 (263)
                      -....++.++.+|.+.-.|...-.+.      ..-..+..-.++-..++..++.|..+|...   -...+..|+..   .
T Consensus       129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~  208 (328)
T COG5536         129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKY  208 (328)
T ss_pred             hHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHH
Confidence            67778888888888876665432222      222334444666667778888888777665   34444455521   1


Q ss_pred             HHHHHHHHHHhhccCCCcchhHHHhH
Q 024712          219 ILLAKKYYASTIDLTGGKNTKALFGI  244 (263)
Q Consensus       219 ~~~A~~~~~~al~~~~~~~~~~~~~l  244 (263)
                      +++-+++.-.++-.+|+ +..+|..+
T Consensus       209 l~~eL~~i~~~if~~p~-~~S~w~y~  233 (328)
T COG5536         209 LEKELEYIFDKIFTDPD-NQSVWGYL  233 (328)
T ss_pred             HHHHHHHHHhhhhcCcc-ccchhhHH
Confidence            44555666666666775 44444433

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=92.56  E-value=2.2  Score=33.23  Aligned_cols=79  Identities=22%  Similarity=0.061  Sum_probs=55.1

Q ss_pred             ChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcC
Q 024712          147 NFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLG  214 (263)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g  214 (263)
                      .....+..+.++++.....      ......+|.-|+..|++++|..+|+.+.......      ..+...+..|+...|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            3445677777777654432      2345678999999999999999999987554322      346677888999999


Q ss_pred             CCCcHHHHHHHHHH
Q 024712          215 GVDNILLAKKYYAS  228 (263)
Q Consensus       215 ~~~~~~~A~~~~~~  228 (263)
                      +   .+..+...-+
T Consensus       233 ~---~~~~l~~~le  243 (247)
T PF11817_consen  233 D---VEDYLTTSLE  243 (247)
T ss_pred             C---HHHHHHHHHH
Confidence            8   7666655443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=92.54  E-value=0.44  Score=23.30  Aligned_cols=27  Identities=15%  Similarity=0.140  Sum_probs=15.0

Q ss_pred             ChHHHHHHHHHHHHhCCCcHHHHHHHH
Q 024712           79 CLDVAKDCIKVLQKQFPESKRVGRLEG  105 (263)
Q Consensus        79 ~~~~A~~~~~~~~~~~p~~~~~~~~~a  105 (263)
                      +.+.+..+|++++...|.++.+|...+
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            445555566666665555555555443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=92.14  E-value=6.1  Score=32.87  Aligned_cols=127  Identities=15%  Similarity=0.097  Sum_probs=85.8

Q ss_pred             HHHHHcCcHHHHHHHHHHHHhcC----CCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCC-HHHHH
Q 024712          106 ILLEAKGLWAEAEKAYSSLLEDN----PLD-----PVLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD-HDAWR  170 (263)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~~~~~~----p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~-~~~~~  170 (263)
                      ..+....++.+|..+-+..+...    -..     ...|+.+..++...|+...-...+...+..     +... .....
T Consensus       134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN  213 (493)
T KOG2581|consen  134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN  213 (493)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence            33445688999888777766531    111     235677777888888876666666655543     1111 23344


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhh--CCCC--HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          171 ELAEIYVSLQMYKQAAFCYEELILS--QPTV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       171 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .|-..|...+.|+.|-....++.--  ..++  ....+.+|.+..-.++   |..|.++|..|+...|.
T Consensus       214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqld---YssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLD---YSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcc---hhHHHHHHHHHHHhCcc
Confidence            5667778889999999888776521  1222  3456678888888899   99999999999999995

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.55  E-value=1.3  Score=33.53  Aligned_cols=63  Identities=10%  Similarity=0.032  Sum_probs=56.6

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                      ..-+...+...+++...+.-++..|.+......+-.++.-.|+|++|..-++-+-.+.|++..
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            345667889999999999999999999999999999999999999999999999999998743

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=91.29  E-value=6.8  Score=31.75  Aligned_cols=105  Identities=16%  Similarity=-0.039  Sum_probs=52.8

Q ss_pred             HHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-----------------------
Q 024712          109 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-----------------------  165 (263)
Q Consensus       109 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----------------------  165 (263)
                      .+..+..+-++....+++++|....++..++.-  ..--..+|...++++++.....                       
T Consensus       195 WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtn  272 (556)
T KOG3807|consen  195 WRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTN  272 (556)
T ss_pred             HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccc
Confidence            344555555666666777777666666555432  2223456666666666542110                       


Q ss_pred             H--HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCC
Q 024712          166 H--DAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGG  215 (263)
Q Consensus       166 ~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~  215 (263)
                      .  .+-..|+.|..++|+..+|++.+....+-.|-.  ..++.++-+++....-
T Consensus       273 vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA  326 (556)
T KOG3807|consen  273 VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA  326 (556)
T ss_pred             hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            0  111235555555566666666655555555422  1234444444444444

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.21  E-value=4.3  Score=34.01  Aligned_cols=59  Identities=12%  Similarity=0.176  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYL--------ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI  193 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  193 (263)
                      ...+..++.-.|+|..|++.++..=        ...+.....++.+|.+|..+++|.+|++.|..++
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666677766666654320        0112223455666777777777777777666655

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.13  E-value=2.8  Score=31.75  Aligned_cols=63  Identities=14%  Similarity=-0.001  Sum_probs=56.6

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH
Q 024712          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD  167 (263)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~  167 (263)
                      ..-+.+.+...+|+...+.-++.+|.+......+-.++.-.|+|++|...++-+-...|++..
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            345677799999999999999999999999999999999999999999999999999988743

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=91.11  E-value=8.7  Score=32.59  Aligned_cols=141  Identities=14%  Similarity=0.063  Sum_probs=98.2

Q ss_pred             ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712           58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR  137 (263)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  137 (263)
                      +.+|.+...|+++...+-.++.+++-.+.++++..-+|--+.+|...-..-...++|.....+|.+++...- +.+.|..
T Consensus        36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~ldLW~l  114 (660)
T COG5107          36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-NLDLWML  114 (660)
T ss_pred             hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-cHhHHHH
Confidence            448899999999999999999999999999999999997777776655555556889888899999987543 3555544


Q ss_pred             HHHHHHHcCC---------hhHHHHHHHHHHHhcCCCHHHHHHHHHHHH---------hcccHHHHHHHHHHHHhhCCCC
Q 024712          138 RVAIAKAQGN---------FPTAIEWLNKYLETFMADHDAWRELAEIYV---------SLQMYKQAAFCYEELILSQPTV  199 (263)
Q Consensus       138 l~~~~~~~g~---------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~  199 (263)
                      .-..-.+.+.         .-+|.+..-.+.-.+|.+...|...+..+.         .+.+.+.-...|++++...-++
T Consensus       115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~n  194 (660)
T COG5107         115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGN  194 (660)
T ss_pred             HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcccc
Confidence            3332222221         223333333333457888888888777653         3455667778889998765444

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.03  E-value=8.5  Score=32.32  Aligned_cols=139  Identities=12%  Similarity=-0.008  Sum_probs=76.8

Q ss_pred             CcchHHHHHHHHH--HHHHcCChHHHHHHHHHHHHhC-----CCcHHHH--------HHHHHHHHHcCcHHHHHHHHHHH
Q 024712           60 GPDVWTLYEQVSI--AAMDCQCLDVAKDCIKVLQKQF-----PESKRVG--------RLEGILLEAKGLWAEAEKAYSSL  124 (263)
Q Consensus        60 ~~~~~~~~~~la~--~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~--------~~~a~~~~~~~~~~~A~~~~~~~  124 (263)
                      +|+.|.++.-+-.  .+.+..+..+-+...+......     .....++        ..+.+++.-.|+|..|++.++.+
T Consensus        69 ~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~i  148 (404)
T PF10255_consen   69 NPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENI  148 (404)
T ss_pred             ccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhcc
Confidence            4667776654333  3344455555444444321100     0122233        34556677889999999988765


Q ss_pred             Hh-------c-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH-HHHHHhcccHHHHHHHHHHHHhh
Q 024712          125 LE-------D-NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL-AEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       125 ~~-------~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~  195 (263)
                      --       . -+-+...++.+|.+|+.+++|.+|+..|...+-.-.......... ...-...+..++...++--++.+
T Consensus       149 dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l  228 (404)
T PF10255_consen  149 DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSL  228 (404)
T ss_pred             CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHh
Confidence            22       1 122345788999999999999999999999875322111000000 00111124455555555556666


Q ss_pred             CCC
Q 024712          196 QPT  198 (263)
Q Consensus       196 ~p~  198 (263)
                      .|.
T Consensus       229 ~p~  231 (404)
T PF10255_consen  229 CPQ  231 (404)
T ss_pred             CCC
Confidence            664

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=90.98  E-value=6.7  Score=31.05  Aligned_cols=74  Identities=5%  Similarity=-0.081  Sum_probs=39.4

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCC--cHHHHHHHHHH---HHHcCcH----HHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712           71 SIAAMDCQCLDVAKDCIKVLQKQFPE--SKRVGRLEGIL---LEAKGLW----AEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (263)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~a~~---~~~~~~~----~~A~~~~~~~~~~~p~~~~~~~~l~~~  141 (263)
                      ...++..++|++-...+.+..+...+  ..+..+..+..   .+.....    ..-.+.++.-+...|++..++..+|.+
T Consensus         7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~   86 (277)
T PF13226_consen    7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY   86 (277)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            34556778888777777777654332  11111211111   1122111    134556666666777777777777776


Q ss_pred             HHH
Q 024712          142 AKA  144 (263)
Q Consensus       142 ~~~  144 (263)
                      +..
T Consensus        87 ~~~   89 (277)
T PF13226_consen   87 WVH   89 (277)
T ss_pred             HHH
Confidence            654

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.43  E-value=7.4  Score=30.67  Aligned_cols=163  Identities=13%  Similarity=0.149  Sum_probs=108.7

Q ss_pred             hhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHH--------cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 024712           39 PDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMD--------CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA  110 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~  110 (263)
                      ...++++...++..       +|+...+|.-.-.+...        ..-++.-+..+..++..+|.+-.+|...-.++..
T Consensus        48 s~~aLklt~elid~-------npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~  120 (328)
T COG5536          48 SVRALKLTQELIDK-------NPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLEL  120 (328)
T ss_pred             CHHHHHHhHHHHhh-------CHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHh
Confidence            45566666677766       57666655543322222        1234556678889999999999998888777766


Q ss_pred             c--CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHcCChhHHHHHHHHHHHhcCCCHHHHHHH---HHHHHhc
Q 024712          111 K--GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA------KAQGNFPTAIEWLNKYLETFMADHDAWREL---AEIYVSL  179 (263)
Q Consensus       111 ~--~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l---a~~~~~~  179 (263)
                      .  ..+..-..+.+++++.++.|..+|...-.+.      ..-..+..-.++-..++..++.+..+|...   -...+..
T Consensus       121 ~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~  200 (328)
T COG5536         121 FPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNR  200 (328)
T ss_pred             CCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhh
Confidence            5  5677778889999999999987665443333      222334444666667888899999998765   3333334


Q ss_pred             cc------HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024712          180 QM------YKQAAFCYEELILSQPTVPLYHLAYAD  208 (263)
Q Consensus       180 g~------~~~A~~~~~~al~~~p~~~~~~~~la~  208 (263)
                      |+      +++-+++...++-.+|.+..+|..+-.
T Consensus       201 ~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~  235 (328)
T COG5536         201 GDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRG  235 (328)
T ss_pred             cccchHHHHHHHHHHHHhhhhcCccccchhhHHHH
Confidence            43      555667777777888988776655443

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.20  E-value=4.6  Score=31.43  Aligned_cols=81  Identities=12%  Similarity=0.011  Sum_probs=58.6

Q ss_pred             cHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcc
Q 024712          113 LWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQ  180 (263)
Q Consensus       113 ~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g  180 (263)
                      .....++++.++++.-...      ......+|..|+..|++++|+..|+.+.......      ..+...+..|+...|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            3445677777777643211      2456689999999999999999999997664433      345667888889999


Q ss_pred             cHHHHHHHHHHHH
Q 024712          181 MYKQAAFCYEELI  193 (263)
Q Consensus       181 ~~~~A~~~~~~al  193 (263)
                      +.+..+.+.-+.+
T Consensus       233 ~~~~~l~~~leLl  245 (247)
T PF11817_consen  233 DVEDYLTTSLELL  245 (247)
T ss_pred             CHHHHHHHHHHHh
Confidence            9988877765544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=90.04  E-value=0.67  Score=37.43  Aligned_cols=79  Identities=14%  Similarity=0.030  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (263)
                      ...+++.+-...+.+..|+.....+++.++....+++..+..+....++++|++.++.+....|++..+...+..+-..
T Consensus       277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~  355 (372)
T KOG0546|consen  277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK  355 (372)
T ss_pred             cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence            4455667777777777777777777777777777788888888888888888888888888888777665555444333

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=89.92  E-value=9  Score=34.40  Aligned_cols=82  Identities=22%  Similarity=0.229  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 024712           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  177 (263)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  177 (263)
                      ..++..+|..+..+..|++|.++|...-..        .+++.+++....+++    ++.....-|.+...+-.+|..+.
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~  863 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFT  863 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHH
Confidence            357788888888889999999888775432        245566666666554    34444556777777777788777


Q ss_pred             hcccHHHHHHHHHH
Q 024712          178 SLQMYKQAAFCYEE  191 (263)
Q Consensus       178 ~~g~~~~A~~~~~~  191 (263)
                      ..|.-++|.++|-+
T Consensus       864 svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  864 SVGMCDQAVEAYLR  877 (1189)
T ss_pred             hhchHHHHHHHHHh
Confidence            77777777776643

>PF12854 PPR_1: PPR repeat

Probab=89.78  E-value=1.2  Score=22.54  Aligned_cols=24  Identities=17%  Similarity=0.109  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHH
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLN  156 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~  156 (263)
                      ..|..+...+.+.|+.++|.+.++
T Consensus         8 ~ty~~lI~~~Ck~G~~~~A~~l~~   31 (34)
T PF12854_consen    8 VTYNTLIDGYCKAGRVDEAFELFD   31 (34)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHH
Confidence            344455555555555555555544

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=89.71  E-value=9.7  Score=30.93  Aligned_cols=172  Identities=13%  Similarity=0.076  Sum_probs=101.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------------------
Q 024712           68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-------------------  128 (263)
Q Consensus        68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------------  128 (263)
                      ..+.....+..+..+-++.-..+++.+|..+.++..++.--.  .-..+|...++++++..                   
T Consensus       188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da  265 (556)
T KOG3807|consen  188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA  265 (556)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence            345566677888888889999999999998888887765322  22344555555554420                   


Q ss_pred             ----CCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhcccHHHHHHHHHHHHhh-CCCC
Q 024712          129 ----PLDP--VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH--DAWRELAEIYVSLQMYKQAAFCYEELILS-QPTV  199 (263)
Q Consensus       129 ----p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~  199 (263)
                          ..+.  .+-..++.|..++|+..+|++.++...+..|-..  .+..+|-..+....-|.+...++-+.-.+ -|..
T Consensus       266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkS  345 (556)
T KOG3807|consen  266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKS  345 (556)
T ss_pred             hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcch
Confidence                1111  2446789999999999999999999988777432  23334555555544444443333322222 1333


Q ss_pred             HHHHHHHH-------------HHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712          200 PLYHLAYA-------------DVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF  242 (263)
Q Consensus       200 ~~~~~~la-------------~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~  242 (263)
                      ....+.-+             +...+.|-...-..|++...++++.||. -+..+.
T Consensus       346 A~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPH-VPkYLL  400 (556)
T KOG3807|consen  346 AAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPH-VPKYLL  400 (556)
T ss_pred             HHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCC-CcHHHH
Confidence            22222111             1112222222235688999999999996 344433

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=89.67  E-value=2.5  Score=37.88  Aligned_cols=168  Identities=16%  Similarity=0.075  Sum_probs=106.2

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHH---cCcHHHHHHHHHHHHhcC-CCCH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEA---KGLWAEAEKAYSSLLEDN-PLDP  132 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~-p~~~  132 (263)
                      .+++...+...|.+..+|+.-+++.+.+... |+.      ..+.+..+.++-+   -|+-++|+...-.+++.. |-.+
T Consensus       200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap  278 (1226)
T KOG4279|consen  200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP  278 (1226)
T ss_pred             CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence            4566677888888899999888887766543 532      2223334444433   378899999888888764 4456


Q ss_pred             HHHHHHHHHHHH---------cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhCC-----
Q 024712          133 VLHKRRVAIAKA---------QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQP-----  197 (263)
Q Consensus       133 ~~~~~l~~~~~~---------~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p-----  197 (263)
                      +.+...|.+|..         .+..+.|+.+|+++.+..|..... .+++.++...| +|+...+.-.-.++++.     
T Consensus       279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrK  357 (1226)
T KOG4279|consen  279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAGEHFENSLELQQIGMKLNSLLGRK  357 (1226)
T ss_pred             ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhhhhccchHHHHHHHHHHHHHhhcc
Confidence            666666777643         345678999999999998875433 45555555544 34555554444444332     


Q ss_pred             C---CHHHHHHHHH---HHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          198 T---VPLYHLAYAD---VLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       198 ~---~~~~~~~la~---~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .   ....++..|.   +-...++   +.+|+..-+..+++.|.
T Consensus       358 G~leklq~YWdV~~y~~asVLAnd---~~kaiqAae~mfKLk~P  398 (1226)
T KOG4279|consen  358 GALEKLQEYWDVATYFEASVLAND---YQKAIQAAEMMFKLKPP  398 (1226)
T ss_pred             chHHHHHHHHhHHHhhhhhhhccC---HHHHHHHHHHHhccCCc
Confidence            1   1112222332   2233466   99999999999999885

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.65  E-value=7  Score=35.60  Aligned_cols=58  Identities=19%  Similarity=0.064  Sum_probs=37.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED  127 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  127 (263)
                      ......+...|+-|+.+.+.--.....-..+....|..++..|++++|...|-+.+..
T Consensus       340 kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  340 KLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            3444556677777776654432111123456667788888888888888888887763

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=89.44  E-value=13  Score=32.10  Aligned_cols=160  Identities=13%  Similarity=0.034  Sum_probs=97.0

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP  149 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  149 (263)
                      +...+.++..+.-...++.+++.. ..+..+++.++.+|... ..++-...+++..+.+-++...-..++..|.. ++..
T Consensus        72 ~~~~f~~n~k~~~veh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~s  148 (711)
T COG1747          72 LLTIFGDNHKNQIVEHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKS  148 (711)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchh
Confidence            344444445555555556665553 34455666677777666 33555666666666666666555566665554 5556


Q ss_pred             HHHHHHHHHHHhc--------------------CCCHHHH--------------------HHHHHHHHhcccHHHHHHHH
Q 024712          150 TAIEWLNKYLETF--------------------MADHDAW--------------------RELAEIYVSLQMYKQAAFCY  189 (263)
Q Consensus       150 ~A~~~~~~~l~~~--------------------p~~~~~~--------------------~~la~~~~~~g~~~~A~~~~  189 (263)
                      ++..+|.+++...                    |++.+..                    ..+-.-|....++++|++.+
T Consensus       149 k~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Il  228 (711)
T COG1747         149 KAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRIL  228 (711)
T ss_pred             hHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHH
Confidence            6666666655321                    2222211                    11123344557899999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHh--------------------cCCCCcHHHHHHHHHHhhccCCC
Q 024712          190 EELILSQPTVPLYHLAYADVLYT--------------------LGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       190 ~~al~~~p~~~~~~~~la~~~~~--------------------~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ...++.+..+..+...+-..+..                    -.+   +..+...|++.+..+.+
T Consensus       229 k~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rn---f~~~l~dFek~m~f~eG  291 (711)
T COG1747         229 KHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRN---FFEALNDFEKLMHFDEG  291 (711)
T ss_pred             HHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhcccc---HHHHHHHHHHHheeccC
Confidence            99999988888777776665555                    223   77788888888877766

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.21  E-value=1  Score=24.46  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=16.8

Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHh
Q 024712          170 RELAEIYVSLQMYKQAAFCYEELIL  194 (263)
Q Consensus       170 ~~la~~~~~~g~~~~A~~~~~~al~  194 (263)
                      +.+|..|...|+++.|...+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4566677777777777777776663

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.17  E-value=2.6  Score=29.63  Aligned_cols=49  Identities=27%  Similarity=0.210  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       167 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      +.....+.-.+..|++.-|..+...++..+|++..+....+.++..+|.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            3444555566667777777777777777777777777777777766665

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=88.89  E-value=4.1  Score=33.78  Aligned_cols=46  Identities=24%  Similarity=0.109  Sum_probs=31.7

Q ss_pred             ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 024712           79 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSL  124 (263)
Q Consensus        79 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  124 (263)
                      ..-+|+-+++.++...|.+..+...+..+|...|-.+.|...|...
T Consensus       198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L  243 (365)
T PF09797_consen  198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL  243 (365)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence            3456666777777777777777777777777777777777766543

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>PF12854 PPR_1: PPR repeat

Probab=88.61  E-value=1.5  Score=22.11  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=17.7

Q ss_pred             CHHHHHHHHHHHHhcccHHHHHHHHHH
Q 024712          165 DHDAWRELAEIYVSLQMYKQAAFCYEE  191 (263)
Q Consensus       165 ~~~~~~~la~~~~~~g~~~~A~~~~~~  191 (263)
                      +...|..+...+.+.|+.++|.+++++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            344566666777777777777776654

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=88.52  E-value=2.7  Score=29.54  Aligned_cols=46  Identities=20%  Similarity=0.169  Sum_probs=28.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCc
Q 024712           68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL  113 (263)
Q Consensus        68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~  113 (263)
                      ...+...+..|++.-|..+++.++..+|++..+...++.++.+.|.
T Consensus        74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            3355556666777777777777777777777766666666665544

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.48  E-value=1.3  Score=23.99  Aligned_cols=25  Identities=12%  Similarity=-0.047  Sum_probs=15.2

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHh
Q 024712          102 RLEGILLEAKGLWAEAEKAYSSLLE  126 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~~~~  126 (263)
                      +.+|..|..+|+.+.|.+.++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3456666666666666666666663

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=88.12  E-value=13  Score=30.29  Aligned_cols=152  Identities=19%  Similarity=0.146  Sum_probs=103.4

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------------------------CcHHHHHHHHHHHHhcC-CCCH
Q 024712           80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAK--------------------------GLWAEAEKAYSSLLEDN-PLDP  132 (263)
Q Consensus        80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--------------------------~~~~~A~~~~~~~~~~~-p~~~  132 (263)
                      -++|+.+=.-+....|..|++.-.++...++.                          +-.+++...+.+++... |...
T Consensus       212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY  291 (415)
T COG4941         212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY  291 (415)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence            46788888888889999999888777776543                          23467788888887754 4433


Q ss_pred             HHHHHHHHHHHH-----cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCCHHHHHH
Q 024712          133 VLHKRRVAIAKA-----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--QPTVPLYHLA  205 (263)
Q Consensus       133 ~~~~~l~~~~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~  205 (263)
                      ..--.++.++-.     .-+|..-...|.-.....|+.. +-.+.+....+..-...++...+-....  -......+..
T Consensus       292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPv-V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~  370 (415)
T COG4941         292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPV-VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAA  370 (415)
T ss_pred             HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCe-EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHH
Confidence            333334444432     2356666666666666666544 3445555555555566777766655543  2234556778


Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          206 YADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       206 la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .|..+..+|+   .++|...|.+++.+.++
T Consensus       371 RadlL~rLgr---~~eAr~aydrAi~La~~  397 (415)
T COG4941         371 RADLLARLGR---VEEARAAYDRAIALARN  397 (415)
T ss_pred             HHHHHHHhCC---hHHHHHHHHHHHHhcCC
Confidence            8999999999   99999999999999876

>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH

Probab=88.03  E-value=8.8  Score=28.27  Aligned_cols=115  Identities=14%  Similarity=0.134  Sum_probs=68.9

Q ss_pred             HHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHH
Q 024712           27 YLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC--------------LDVAKDCIKVLQK   92 (263)
Q Consensus        27 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~   92 (263)
                      ..+..|++...+.....+....++..+............+...+..+  ..|+              ++.|+.+++.+-+
T Consensus        20 ~c~aFR~~r~~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI--~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~   97 (200)
T cd00280          20 ACRAFREGRYEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRI--AEGKNLDCQFENDEELTPLESALMVLESIEK   97 (200)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHH--HcCCCCCCccCCCCCcChHHHHHHHHHHHHH
Confidence            45666777777777888888888766333332222222332333332  2232              5678888888777


Q ss_pred             hCCCcH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712           93 QFPESK--------RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA  144 (263)
Q Consensus        93 ~~p~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  144 (263)
                      ..|...        .+......++...|.|++|.+.+++..+ +|++......|..+-..
T Consensus        98 E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~  156 (200)
T cd00280          98 EFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE  156 (200)
T ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence            666321        1222345567788899999999988888 77766655555544433

Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.73  E-value=15  Score=30.68  Aligned_cols=95  Identities=8%  Similarity=-0.046  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--------CCHH
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQP--------TVPL  201 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~  201 (263)
                      .++..+|..|...|+.+.|+..|-++-....+.   ...|.++-.+-...|+|.....+..++...-.        -.+.
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k  230 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK  230 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence            467788999999999999999999866554333   45677777777888888877777777665410        0122


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712          202 YHLAYADVLYTLGGVDNILLAKKYYASTI  230 (263)
Q Consensus       202 ~~~~la~~~~~~g~~~~~~~A~~~~~~al  230 (263)
                      +...-|.+.+.+++   |+.|.++|-.+.
T Consensus       231 l~C~agLa~L~lkk---yk~aa~~fL~~~  256 (466)
T KOG0686|consen  231 LKCAAGLANLLLKK---YKSAAKYFLLAE  256 (466)
T ss_pred             hHHHHHHHHHHHHH---HHHHHHHHHhCC
Confidence            44445566666778   999988887654

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=87.28  E-value=5.3  Score=33.16  Aligned_cols=46  Identities=17%  Similarity=0.102  Sum_probs=37.7

Q ss_pred             CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 024712          112 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK  157 (263)
Q Consensus       112 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  157 (263)
                      ...-+|+.+++.++..+|.++.....+..+|...|-.+.|...|..
T Consensus       197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~  242 (365)
T PF09797_consen  197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES  242 (365)
T ss_pred             HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            3456788888888888888888888888888888888888888865

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>PF13041 PPR_2: PPR repeat family

Probab=87.11  E-value=3.5  Score=22.72  Aligned_cols=15  Identities=27%  Similarity=0.461  Sum_probs=5.5

Q ss_pred             HcCcHHHHHHHHHHH
Q 024712          110 AKGLWAEAEKAYSSL  124 (263)
Q Consensus       110 ~~~~~~~A~~~~~~~  124 (263)
                      +.|++++|.++|++.
T Consensus        15 ~~~~~~~a~~l~~~M   29 (50)
T PF13041_consen   15 KAGKFEEALKLFKEM   29 (50)
T ss_pred             HCcCHHHHHHHHHHH
Confidence            333333333333333

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=86.74  E-value=20  Score=31.06  Aligned_cols=149  Identities=13%  Similarity=-0.021  Sum_probs=102.5

Q ss_pred             CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 024712           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  174 (263)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~  174 (263)
                      |-+...+..+-.++....++.-....+.+++.. ..+..++..++.+|... ..++-...+++.++.+-++...-..|+.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~  140 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD  140 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence            444555566666666666777777788888876 45567788999999888 5567788899999999998888888888


Q ss_pred             HHHhcccHHHHHHHHHHHHhhC--------------------CCCHHHHHH------------HH-----HHHHhcCCCC
Q 024712          175 IYVSLQMYKQAAFCYEELILSQ--------------------PTVPLYHLA------------YA-----DVLYTLGGVD  217 (263)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~--------------------p~~~~~~~~------------la-----~~~~~~g~~~  217 (263)
                      .|.. ++-+.+..+|.+++...                    |++.+....            .+     .++-.-...+
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e  219 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE  219 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence            8766 77788888887776431                    333221111            11     1111111134


Q ss_pred             cHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712          218 NILLAKKYYASTIDLTGGKNTKALFGICLV  247 (263)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~l~~~  247 (263)
                      ++.+|+......++.+.. +.++.-.++..
T Consensus       220 N~~eai~Ilk~il~~d~k-~~~ar~~~i~~  248 (711)
T COG1747         220 NWTEAIRILKHILEHDEK-DVWARKEIIEN  248 (711)
T ss_pred             CHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence            599999999999999874 88887766544

>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]

Probab=85.83  E-value=17  Score=29.40  Aligned_cols=173  Identities=12%  Similarity=0.003  Sum_probs=100.1

Q ss_pred             cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCC--cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---CC
Q 024712           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ--FPE--SKRVGRLEGILLEAKGLWAEAEKAYSSLLED---NP  129 (263)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p  129 (263)
                      -.+.|+...+.+..+...+..|+|..|-.++=.....  .|+  ...+....-..-.-+.+|+.|.+.+.+.-+.   ++
T Consensus       122 ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~~  201 (432)
T KOG2758|consen  122 YNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDSKS  201 (432)
T ss_pred             cCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcccc
Confidence            4568899999999999999999999998775443333  332  2333333333445568899999888776553   22


Q ss_pred             CCH--HHHHHHHH----HHHHcCChhHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHhc-ccHHHHHHHHHHHHh
Q 024712          130 LDP--VLHKRRVA----IAKAQGNFPTAIEWLNKYL--------ETFMADHDAWRELAEIYVSL-QMYKQAAFCYEELIL  194 (263)
Q Consensus       130 ~~~--~~~~~l~~----~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~  194 (263)
                      -..  ........    .++-.-++.++...+-..+        .+....|..+..|+.+-.-. .+...+++-+-++++
T Consensus       202 f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlvkVIq  281 (432)
T KOG2758|consen  202 FSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLVKVIQ  281 (432)
T ss_pred             cccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHHHHHH
Confidence            221  11111111    1111112222222211111        12224456667777666554 667788888888887


Q ss_pred             hCCCC-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          195 SQPTV-PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       195 ~~p~~-~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      ..... .+.....-.|++-.-+   ++.|...++++-+.
T Consensus       282 qE~ysYkDPiteFl~clyvn~D---FdgAq~kl~eCeeV  317 (432)
T KOG2758|consen  282 QESYSYKDPITEFLECLYVNYD---FDGAQKKLRECEEV  317 (432)
T ss_pred             HhccccCCcHHHHHHHHhhccc---hHHHHHHHHHHHHH
Confidence            65422 2233445567777778   99998888877543

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.62  E-value=16  Score=28.86  Aligned_cols=192  Identities=10%  Similarity=0.064  Sum_probs=105.9

Q ss_pred             cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHH
Q 024712           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLE  109 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~  109 (263)
                      ...+++++.-...++.-   ....+.=-+.++.++..+.++.+++++-...|.+++.--.      .+.......-+.-.
T Consensus        40 e~~p~~Al~sF~kVlel---EgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS  116 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLEL---EGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS  116 (440)
T ss_pred             ccCHHHHHHHHHHHHhc---ccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence            34566666666665544   1111111334677888999999999999888887765321      01111111111111


Q ss_pred             HcCcHHHHHHHHHHHHhc--CCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------------HHHHHH
Q 024712          110 AKGLWAEAEKAYSSLLED--NPLDPV----LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------------HDAWRE  171 (263)
Q Consensus       110 ~~~~~~~A~~~~~~~~~~--~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~  171 (263)
                      ...+.+--..+|+.-+..  +..+..    ....+|.+++..|.+.+-...+++.-.....+            .+++..
T Consensus       117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl  196 (440)
T KOG1464|consen  117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL  196 (440)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence            223333333344433321  122222    33468888988888877766666654432211            233444


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhhCCCC--HHHHH----HHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712          172 LAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHL----AYADVLYTLGGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       172 la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~----~la~~~~~~g~~~~~~~A~~~~~~al~~~  233 (263)
                      -..+|-.+++-.+-..+|++++.+...-  |.+.-    .=|..+...|+   +++|...|-.+++-.
T Consensus       197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~---fe~AhTDFFEAFKNY  261 (440)
T KOG1464|consen  197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGE---FEKAHTDFFEAFKNY  261 (440)
T ss_pred             HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccch---HHHHHhHHHHHHhcc
Confidence            4566777777777778888888664322  22222    22445566677   888888888887653

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=85.31  E-value=17  Score=28.86  Aligned_cols=28  Identities=14%  Similarity=0.098  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 024712           83 AKDCIKVLQKQFPESKRVGRLEGILLEA  110 (263)
Q Consensus        83 A~~~~~~~~~~~p~~~~~~~~~a~~~~~  110 (263)
                      -...++.-++..|++..++..+|..+..
T Consensus        62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~   89 (277)
T PF13226_consen   62 RLAVLKAWVAACPKSYHAHLAMGMYWVH   89 (277)
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            4556666667777777777777776654

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.29  E-value=21  Score=29.93  Aligned_cols=95  Identities=14%  Similarity=0.077  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc----------CC
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP---ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED----------NP  129 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~p  129 (263)
                      .-.++..++..|...|+++.|++.|.++-.-.-   .....+.++-.+-...|+|..-..+..++...          -|
T Consensus       149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~  228 (466)
T KOG0686|consen  149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP  228 (466)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence            345678899999999999999999988554333   23345566667777788888877777777653          11


Q ss_pred             CCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 024712          130 LDPVLHKRRVAIAKAQGNFPTAIEWLNKYL  159 (263)
Q Consensus       130 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  159 (263)
                      ..  ....-|.+...++++..|..++-.+.
T Consensus       229 ~k--l~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  229 AK--LKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             cc--hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            22  23334444555668888877776543

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=84.84  E-value=20  Score=29.26  Aligned_cols=128  Identities=13%  Similarity=0.106  Sum_probs=85.1

Q ss_pred             CChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 024712           78 QCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAK-----GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA  151 (263)
Q Consensus        78 ~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  151 (263)
                      +-.+++...+.++.... |.-..+.-.++-++...     -+|..-..+|.......|+.... .+.+.......-...+
T Consensus       270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~-LNRAVAla~~~Gp~ag  348 (415)
T COG4941         270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVT-LNRAVALAMREGPAAG  348 (415)
T ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEe-ehHHHHHHHhhhHHhH
Confidence            44677788888887754 44333333444444332     46777777888877777765443 4455555555556667


Q ss_pred             HHHHHHHHHh--cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024712          152 IEWLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  206 (263)
Q Consensus       152 ~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  206 (263)
                      +...+.....  -......+...|.++.+.|+.++|...|++++.+.++.....+..
T Consensus       349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~  405 (415)
T COG4941         349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR  405 (415)
T ss_pred             HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence            7777666554  223344566789999999999999999999999998876654433

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=84.18  E-value=24  Score=29.59  Aligned_cols=60  Identities=20%  Similarity=0.093  Sum_probs=43.4

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH--HHHHHHH--HHHHcCChhHHHHHHHHHHHh
Q 024712          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV--LHKRRVA--IAKAQGNFPTAIEWLNKYLET  161 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~l~~--~~~~~g~~~~A~~~~~~~l~~  161 (263)
                      ...+..++..++|..|...+..+...-|....  .+..+..  .+...-++.+|...+++.+..
T Consensus       135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            45677788999999999999999985333332  3444433  344677899999999987764

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=83.92  E-value=2.4  Score=20.23  Aligned_cols=22  Identities=18%  Similarity=0.415  Sum_probs=10.3

Q ss_pred             HHHHHHHhcccHHHHHHHHHHH
Q 024712          171 ELAEIYVSLQMYKQAAFCYEEL  192 (263)
Q Consensus       171 ~la~~~~~~g~~~~A~~~~~~a  192 (263)
                      .+-..|...|++++|.+.|++.
T Consensus         5 ~li~~~~~~~~~~~a~~~~~~M   26 (31)
T PF01535_consen    5 SLISGYCKMGQFEEALEVFDEM   26 (31)
T ss_pred             HHHHHHHccchHHHHHHHHHHH
Confidence            3444444444444444444443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF13041 PPR_2: PPR repeat family

Probab=83.85  E-value=5.4  Score=21.95  Aligned_cols=28  Identities=14%  Similarity=0.249  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712          168 AWRELAEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       168 ~~~~la~~~~~~g~~~~A~~~~~~al~~  195 (263)
                      .|..+-..+.+.|++++|.++|++..+.
T Consensus         5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    5 TYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            4445555555555555555555555543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=83.81  E-value=32  Score=30.85  Aligned_cols=50  Identities=18%  Similarity=0.062  Sum_probs=27.3

Q ss_pred             HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712          174 EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (263)
Q Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a  229 (263)
                      .+....+++.+|....++.-+.-   +.+++..|+-+....+   +++|.+.|.++
T Consensus       781 qlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~Dr---FeEAqkAfhkA  830 (1081)
T KOG1538|consen  781 QLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDR---FEEAQKAFHKA  830 (1081)
T ss_pred             hheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhh---HHHHHHHHHHh
Confidence            34455566777766555433332   3345555655555555   66666665554

>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]

Probab=83.65  E-value=25  Score=29.54  Aligned_cols=57  Identities=12%  Similarity=0.161  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHhcccHHHHHHHHHHHHh
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD-------AWRELAEIYVSLQMYKQAAFCYEELIL  194 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~  194 (263)
                      ++..+..++.-+|++ +|   --+.++++|....       +-+..|.+|...++|.+|++.|..++.
T Consensus       237 sL~GLlR~H~lLgDh-Qa---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLl  300 (525)
T KOG3677|consen  237 SLLGLLRMHILLGDH-QA---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL  300 (525)
T ss_pred             HHHHHHHHHHHhhhh-Hh---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666678884 44   4455666665421       226789999999999999999988774

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=83.28  E-value=13  Score=25.82  Aligned_cols=47  Identities=9%  Similarity=-0.149  Sum_probs=29.6

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHH
Q 024712           75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYS  122 (263)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~  122 (263)
                      .+.+.....+.+++.++..++.++.....+...|... +..+.+..++
T Consensus        18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~   64 (140)
T smart00299       18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD   64 (140)
T ss_pred             HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence            4456777777777777777666666666666666543 3344445544

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=82.95  E-value=39  Score=31.12  Aligned_cols=50  Identities=18%  Similarity=-0.043  Sum_probs=22.4

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH
Q 024712           87 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK  136 (263)
Q Consensus        87 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  136 (263)
                      ++.-...++.+......+-.++...|++++-...-..+.+..|..+..|.
T Consensus       102 ~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl  151 (881)
T KOG0128|consen  102 LEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWL  151 (881)
T ss_pred             HHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHH
Confidence            33333333444444444444555555554444444444444444444443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.56  E-value=14  Score=32.57  Aligned_cols=131  Identities=18%  Similarity=0.149  Sum_probs=74.7

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 024712           75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW  154 (263)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  154 (263)
                      ...|+++.|...+..+    |  .......+..+..+|-.++|+       +..++ ++-.+   .+..+.|+++.|.+.
T Consensus       597 vmrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~AL-------~~s~D-~d~rF---elal~lgrl~iA~~l  659 (794)
T KOG0276|consen  597 VLRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQAL-------ELSTD-PDQRF---ELALKLGRLDIAFDL  659 (794)
T ss_pred             hhhccccccccccccC----c--hhhhhhHHhHhhhccchHhhh-------hcCCC-hhhhh---hhhhhcCcHHHHHHH
Confidence            3346666665543222    2  122334455666666655554       33333 22222   234567777777665


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC--------CCCHHHHHHHH-------------HHHHhc
Q 024712          155 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ--------PTVPLYHLAYA-------------DVLYTL  213 (263)
Q Consensus       155 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la-------------~~~~~~  213 (263)
                      ..++     ++..-|..||.+....+++..|.+|+.++....        ..+...+..+|             .+++..
T Consensus       660 a~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~  734 (794)
T KOG0276|consen  660 AVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLS  734 (794)
T ss_pred             HHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHc
Confidence            5443     556678888888888888888888888875432        22333222222             356667


Q ss_pred             CCCCcHHHHHHHHHHhh
Q 024712          214 GGVDNILLAKKYYASTI  230 (263)
Q Consensus       214 g~~~~~~~A~~~~~~al  230 (263)
                      |+   +++..+.+.+.-
T Consensus       735 g~---~~~C~~lLi~t~  748 (794)
T KOG0276|consen  735 GD---YEECLELLISTQ  748 (794)
T ss_pred             CC---HHHHHHHHHhcC
Confidence            77   888777776653

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=81.39  E-value=15  Score=25.17  Aligned_cols=26  Identities=12%  Similarity=-0.064  Sum_probs=15.9

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHh
Q 024712          136 KRRVAIAKAQGNFPTAIEWLNKYLET  161 (263)
Q Consensus       136 ~~l~~~~~~~g~~~~A~~~~~~~l~~  161 (263)
                      ..+|...+..+++-.++-.|++++.+
T Consensus         5 tllAd~a~~~~~~l~si~hYQqAls~   30 (140)
T PF10952_consen    5 TLLADQAFKEADPLRSILHYQQALSL   30 (140)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHH
Confidence            34555666666666666666666654

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=81.31  E-value=14  Score=25.73  Aligned_cols=53  Identities=21%  Similarity=0.218  Sum_probs=0.0

Q ss_pred             HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712          174 EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (263)
Q Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a  229 (263)
                      .....+|+-++--+.+...++....+|.....+|.+|-+.|+   ..+|.+.+.+|
T Consensus        94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~---~r~~~ell~~A  146 (161)
T PF09205_consen   94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGN---TREANELLKEA  146 (161)
T ss_dssp             HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcc---hhhHHHHHHHH

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=81.27  E-value=15  Score=25.23  Aligned_cols=76  Identities=21%  Similarity=0.343  Sum_probs=45.5

Q ss_pred             CChhHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcC
Q 024712          146 GNFPTAIEWLNKYLETFMAD---------HDAWRELAEIYVSLQMYKQAAFCYEELILS--QPTVPLYHLAYADVLYTLG  214 (263)
Q Consensus       146 g~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g  214 (263)
                      +....-...+++++....++         ..+|...+.    .-  +.+..+|..+...  ....+..+...|..+...|
T Consensus        40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~----~~--~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~  113 (126)
T PF08311_consen   40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD----LS--SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG  113 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----TB--SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT
T ss_pred             CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----Hc--cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC
Confidence            34455556777777665443         223333332    11  2666777766643  3455667777888888888


Q ss_pred             CCCcHHHHHHHHHHhh
Q 024712          215 GVDNILLAKKYYASTI  230 (263)
Q Consensus       215 ~~~~~~~A~~~~~~al  230 (263)
                      +   +++|.+.|+.++
T Consensus       114 ~---~~~A~~I~~~Gi  126 (126)
T PF08311_consen  114 N---FKKADEIYQLGI  126 (126)
T ss_dssp             ----HHHHHHHHHHHH
T ss_pred             C---HHHHHHHHHhhC
Confidence            8   888888887664

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=81.12  E-value=8.6  Score=34.16  Aligned_cols=77  Identities=14%  Similarity=0.091  Sum_probs=38.6

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccH
Q 024712          103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY  182 (263)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  182 (263)
                      ..+..+.....+.-|.+.|+++-.        ...+..++...++|++|....++.-+.-|   ++++..|..+....++
T Consensus       752 ~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrF  820 (1081)
T KOG1538|consen  752 LCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRF  820 (1081)
T ss_pred             HHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccccc---cccchHHHHhhhhhhH
Confidence            334444444444445554444322        12345566677888888776665433322   3444445555445455


Q ss_pred             HHHHHHHH
Q 024712          183 KQAAFCYE  190 (263)
Q Consensus       183 ~~A~~~~~  190 (263)
                      ++|.+.|.
T Consensus       821 eEAqkAfh  828 (1081)
T KOG1538|consen  821 EEAQKAFH  828 (1081)
T ss_pred             HHHHHHHH
Confidence            55444443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.97  E-value=40  Score=29.97  Aligned_cols=26  Identities=23%  Similarity=0.230  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHH
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKY  158 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~  158 (263)
                      .-|..||......|++..|.+++.++
T Consensus       667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a  692 (794)
T KOG0276|consen  667 VKWRQLGDAALSAGELPLASECFLRA  692 (794)
T ss_pred             HHHHHHHHHHhhcccchhHHHHHHhh
Confidence            34455555555555555555555544

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.69  E-value=34  Score=29.75  Aligned_cols=113  Identities=13%  Similarity=0.033  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChhHHHHHHH
Q 024712           81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV----LHKRRVAIAKAQGNFPTAIEWLN  156 (263)
Q Consensus        81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~  156 (263)
                      ....+.+.......|.++......+..+...|+.+.|+..++..++  +.-..    .++.++.++.-+.+|..|-..+.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH


Q ss_pred             HHHHhcCCCHHHHHHHH---------HHHHhcccHHHHHHHHHHHHhh
Q 024712          157 KYLETFMADHDAWRELA---------EIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       157 ~~l~~~p~~~~~~~~la---------~~~~~~g~~~~A~~~~~~al~~  195 (263)
                      .......=+.-.+..++         .+....|+-+.|-.+++....+
T Consensus       328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l  375 (546)
T KOG3783|consen  328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEEL  375 (546)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHH

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.63  E-value=29  Score=28.14  Aligned_cols=96  Identities=16%  Similarity=0.127  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-CCC------HHHHHHHHHHHHHcCChhHHHHHHHHHH--HhcCCCHHHH
Q 024712           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLD------PVLHKRRVAIAKAQGNFPTAIEWLNKYL--ETFMADHDAW  169 (263)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~  169 (263)
                      .+...+|.+|...++|..|...+..+-... +..      ...+..++.+|...++..+|..+..++-  ..+..+....
T Consensus       104 ~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq  183 (399)
T KOG1497|consen  104 SIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ  183 (399)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence            456789999999999999988776543222 111      2356788999999999999999988863  3345665555


Q ss_pred             HHH----HHHHHhcccHHHHHHHHHHHHh
Q 024712          170 REL----AEIYVSLQMYKQAAFCYEELIL  194 (263)
Q Consensus       170 ~~l----a~~~~~~g~~~~A~~~~~~al~  194 (263)
                      ..+    |.++-..++|-+|...|.+...
T Consensus       184 ie~kvc~ARvlD~krkFlEAAqrYyels~  212 (399)
T KOG1497|consen  184 IEYKVCYARVLDYKRKFLEAAQRYYELSQ  212 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443    4444456777777776665543

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=80.46  E-value=30  Score=28.17  Aligned_cols=98  Identities=12%  Similarity=-0.018  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH----H
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL----Y  202 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~  202 (263)
                      .++.+.+..|.+.|+.+.|.+.+.+..+..-.-      .-....+|.+|....-..+.++..+..++... +++    .
T Consensus       105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg-DWeRrNRl  183 (393)
T KOG0687|consen  105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG-DWERRNRL  183 (393)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC-ChhhhhhH
Confidence            466667777777777777777666655532211      11233455555554444444444444444332 221    1


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          203 HLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       203 ~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      ...-|.-.+...+   +.+|-..|..++....
T Consensus       184 KvY~Gly~msvR~---Fk~Aa~Lfld~vsTFt  212 (393)
T KOG0687|consen  184 KVYQGLYCMSVRN---FKEAADLFLDSVSTFT  212 (393)
T ss_pred             HHHHHHHHHHHHh---HHHHHHHHHHHccccc
Confidence            1222333334455   6666666666665443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=80.21  E-value=5.2  Score=19.46  Aligned_cols=24  Identities=8%  Similarity=0.019  Sum_probs=13.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHH
Q 024712           69 QVSIAAMDCQCLDVAKDCIKVLQK   92 (263)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~   92 (263)
                      .+...+.+.|++++|.++|..+.+
T Consensus         5 ~li~~~~~~~~~~~a~~~~~~M~~   28 (35)
T TIGR00756         5 TLIDGLCKAGRVEEALELFKEMLE   28 (35)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344455566666666666665544

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=80.08  E-value=36  Score=28.90  Aligned_cols=154  Identities=15%  Similarity=0.142  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHH------HHHHHHHHHHcCc--------------HHHHHHHHHHH
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRV------GRLEGILLEAKGL--------------WAEAEKAYSSL  124 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------~~~~a~~~~~~~~--------------~~~A~~~~~~~  124 (263)
                      .....+|..++-.++|+.|..+|+.+...+..+...      .-+.|.+.+..+.              ++.|...|.++
T Consensus       209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~  288 (414)
T PF12739_consen  209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS  288 (414)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence            345568999999999999999999999877643322      2233444444442              23333334442


Q ss_pred             H----hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--c--CC---CHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 024712          125 L----EDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--F--MA---DHDAWRELAEIYVSLQMYKQAAFCYEELI  193 (263)
Q Consensus       125 ~----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~--p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al  193 (263)
                      -    ........+....+.++...|.+.+|...+-++...  .  ..   ..-.+..+|.++              ..+
T Consensus       289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~--------------~~~  354 (414)
T PF12739_consen  289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY--------------ASL  354 (414)
T ss_pred             hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--------------ccc
Confidence            1    111122234555666777788877777766666554  1  22   233344445554              111


Q ss_pred             hh-CC--C-----CHHHHHH-HHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          194 LS-QP--T-----VPLYHLA-YADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       194 ~~-~p--~-----~~~~~~~-la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .. .|  .     -...+.. -|.-|...|+   ...|...|.+++....+
T Consensus       355 ~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~---~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  355 RSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQ---KKHALRCYKQALQVYEG  402 (414)
T ss_pred             ccCCCCccchhhHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhCC
Confidence            11 11  1     0112333 3678888999   99999999999887553

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	263
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-05
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	4e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-05
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	7e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	9e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-04
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	8e-04

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 4/152 (2%)

Query: 81  DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140
              + C+++  +Q P++  V  L   +         +    +  ++ NPL    +     
Sbjct: 17  AAERHCMQLW-RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN 75

Query: 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200
           + K +G    AIE     L       D +  LA   V+    + A   Y   +   P + 
Sbjct: 76  VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135

Query: 201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
                  ++L  LG ++    AK  Y   I+ 
Sbjct: 136 CVRSDLGNLLKALGRLEE---AKACYLKAIET 164

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 3/128 (2%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                  G +  AE+    L    P +  +     +I         +  +    ++    
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
             +A+  L  +Y      ++A   Y   +  +P     ++  A  L   G ++    A +
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQ 122

Query: 225 YYASTIDL 232
            Y S +  
Sbjct: 123 AYVSALQY 130

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 55.6 bits (135), Expect = 3e-09
 Identities = 29/110 (26%), Positives = 41/110 (37%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
              L+ KG  AEAE  Y++ L   P           I + QGN   A+    K LE F  
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              A   LA +       ++A   Y+E I   PT    +    + L  + 
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 3/128 (2%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
              L A G    A +AY S L+ NP    +      + KA G    A     K +ET   
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
              AW  L  ++ +      A   +E+ +   P     ++   +VL      D    A  
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR---AVA 224

Query: 225 YYASTIDL 232
            Y   + L
Sbjct: 225 AYLRALSL 232

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 28/110 (25%), Positives = 41/110 (37%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G LL+A G   EA+  Y   +E  P   V       +  AQG    AI    K +     
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
             DA+  L  +    +++ +A   Y   +   P   + H   A V Y  G
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 25/110 (22%), Positives = 40/110 (36%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G +L+   ++  A  AY   L  +P   V+H     +   QG    AI+   + +E    
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
             DA+  LA          +A  CY   +   PT        A++    G
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 63.1 bits (154), Expect = 7e-12
 Identities = 28/128 (21%), Positives = 58/128 (45%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G +L  KG  + A + Y + ++ +     ++ +  +    +GNFP AI+++ K +     
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
           D   + EL + Y   + Y +A   + +++  +P + + +L  A             LAK 
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200

Query: 225 YYASTIDL 232
           YY   I++
Sbjct: 201 YYEKLIEV 208

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 6/131 (4%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
              L     +AEA + ++ L       P ++ RR         +  A + +  Y     A
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69

Query: 165 D---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221
                  +    +I +       A   Y+  +    T    +       Y  G       
Sbjct: 70  TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPL--- 126

Query: 222 AKKYYASTIDL 232
           A +Y    I  
Sbjct: 127 AIQYMEKQIRP 137

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 20/156 (12%), Positives = 44/156 (28%), Gaps = 6/156 (3%)

Query: 80  LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA---YSSLLEDNPLDPVLHK 136
              A +    L+ +   S  +     +       +  A+K    Y S +          +
Sbjct: 19  YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78

Query: 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196
               I   +G    AI+     ++      D + ++   + +   +  A    E+ I   
Sbjct: 79  YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138

Query: 197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
            T P          Y        + A   +   ++L
Sbjct: 139 TTDPKVFYELGQAYYYNK---EYVKADSSFVKVLEL 171

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 18/121 (14%), Positives = 37/121 (30%), Gaps = 18/121 (14%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN---FPTAIEWLNKYLET 161
           G        + +A+ ++  +LE  P   + +  R     AQ        A  +  K +E 
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208

Query: 162 FMAD--------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213
                        +A   +A  Y   +   +A   ++ ++   PT           +  L
Sbjct: 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT-------NKKAIDGL 261

Query: 214 G 214
            
Sbjct: 262 K 262

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 18/103 (17%), Positives = 32/103 (31%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                 KG   EAE  +  L   +  +        AI + +  F  A +           
Sbjct: 43  AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207
           D+       +  + L+   +A  C+E +I       L   A +
Sbjct: 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 3/88 (3%)

Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204
           +G    A  +          + D    LA IY   + ++QAA  Y               
Sbjct: 49  KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108

Query: 205 AYADVLYTLGGVDNILLAKKYYASTIDL 232
                   L      L AK+ +   I  
Sbjct: 109 HTGQCQLRLK---APLKAKECFELVIQH 133

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 13/127 (10%), Positives = 36/127 (28%), Gaps = 2/127 (1%)

Query: 53  PKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG 112
            K  +A+  D+       +    +   ++ A+   + L      +         + + K 
Sbjct: 25  LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84

Query: 113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL 172
            + +A   Y+        D                   A E     ++   ++ +  +  
Sbjct: 85  QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ--HSNDEKLKIK 142

Query: 173 AEIYVSL 179
           A+ Y+  
Sbjct: 143 AQSYLDA 149

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 60.4 bits (147), Expect = 7e-11
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 12/137 (8%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+          AE+ +S  L   P DP +      +A   G + TA +W    LE   A
Sbjct: 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225

Query: 165 D---------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215
                           L  +   L+ Y +A   + + ++  P     + A   +   +G 
Sbjct: 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG- 284

Query: 216 VDNILLAKKYYASTIDL 232
             N   A  Y+ + + L
Sbjct: 285 --NFENAVDYFHTALGL 299

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 14/118 (11%), Positives = 36/118 (30%), Gaps = 4/118 (3%)

Query: 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 175
            +E      ++    +  +            +F    +  +  +E               
Sbjct: 6   PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65

Query: 176 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY--ASTID 231
            V L    +  +   +L+   P+ P+   A       +G  +    A++Y   A+T++
Sbjct: 66  LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNE--HARRYLSKATTLE 121

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 15/129 (11%), Positives = 35/129 (27%), Gaps = 4/129 (3%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                    +    K  S ++E +P         +                +K ++ + +
Sbjct: 29  AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88

Query: 165 DHDAWRELAEIYVSL-QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223
           +  +W  +   Y+ +    + A     +    + T     +AY          D    A 
Sbjct: 89  NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ---AM 145

Query: 224 KYYASTIDL 232
             Y +   L
Sbjct: 146 AAYFTAAQL 154

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 13/122 (10%), Positives = 36/122 (29%), Gaps = 9/122 (7%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNP-LDPVLHKRRVAIA--------KAQGNFPTAIEWL 155
           G++    G W  AEK +   LE    +   +   +            +    +  A+++ 
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 156 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215
            + L     +   +  +  I+  +  ++ A   +   +  +             +    G
Sbjct: 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319

Query: 216 VD 217
             
Sbjct: 320 DS 321

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 23/215 (10%), Positives = 50/215 (23%), Gaps = 39/215 (18%)

Query: 53  PKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG 112
           P+    L  ++  +   ++          +      V+ ++ P       +    L    
Sbjct: 12  PESVDGLQENLDVVV-SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN 70

Query: 113 LWAEAEKAYSSLLEDNPLDPVLH------------KRRVAIA------------------ 142
              E       L++  P +PV              K   A                    
Sbjct: 71  KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIA 130

Query: 143 -----KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197
                  +     A+       +     H     +   Y      K A   + + +   P
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190

Query: 198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
             P        V +  G       A+K++   ++ 
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKT---AEKWFLDALEK 222

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 26/135 (19%), Positives = 39/135 (28%), Gaps = 10/135 (7%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+     G    A +   S       DP+L      +A  + +  TAI      L     
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507

Query: 165 -------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217
                      W  L   Y  L+MY  A     + +L        H A A V        
Sbjct: 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK--- 564

Query: 218 NILLAKKYYASTIDL 232
              LA  +   ++ +
Sbjct: 565 IPGLAITHLHESLAI 579

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 25/186 (13%), Positives = 55/186 (29%), Gaps = 4/186 (2%)

Query: 47  LSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI 106
           +  LN           + +LY            L  A+D +  +     +S  +   +  
Sbjct: 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING-LEKSSDLLLCKAD 313

Query: 107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 166
            L  +  + +     + +LE +P +  ++   +A     G         N  ++      
Sbjct: 314 TLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA 373

Query: 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 226
             W  +   Y+ +    +A   + +     P      + +A      G  D    A   Y
Sbjct: 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ---AISAY 430

Query: 227 ASTIDL 232
            +   L
Sbjct: 431 TTAARL 436

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 20/129 (15%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA-KAQGNFPTAIEWLNKYLETFM 163
           GI        +EA + +S     +P          A +   +G    AI         F 
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGF-AHSFAIEGEHDQAISAYTTAARLFQ 438

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223
             H  +  L   ++ L     A    +         PL       V +      ++  A 
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS---DMQTAI 495

Query: 224 KYYASTIDL 232
            ++ + + L
Sbjct: 496 NHFQNALLL 504

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 2/122 (1%)

Query: 105 GILLEAKGLWAEAEK-AYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
             LL A   W    K  YS+  +++               +  +     E     +    
Sbjct: 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE 302

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN-ILLA 222
              D     A+       +        +++   P     +  +   L+  G  +   L++
Sbjct: 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLIS 362

Query: 223 KK 224
             
Sbjct: 363 ND 364

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 7/100 (7%)

Query: 105 GILLEAKGLWAEAEKAY-------SSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 157
           G++   K     A   +            +               +    +  AI+ LN+
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541

Query: 158 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197
            L     D +    +A +Y+  ++   A     E +   P
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 58.7 bits (142), Expect = 4e-10
 Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 3/115 (2%)

Query: 112 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 171
                      + +   P D V            G+       + + L       +A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 226
           L  +  + Q + +AA   ++   + P  P   L     L   G       A   Y
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG---QAEAAAAAY 114

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 17/115 (14%), Positives = 24/115 (20%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                  G     E A    L  +P  P    R   +   Q     A   L +  +    
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219
                  L          + AA  Y       P  P       +    L     +
Sbjct: 90  HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRAL 144

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 15/170 (8%), Positives = 42/170 (24%)

Query: 58  ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA 117
              P  +  +  ++ A +        +  ++      P         G +   +   AEA
Sbjct: 17  RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEA 76

Query: 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 177
                   +  P  P +        +  G    A     +  +    +     +L     
Sbjct: 77  AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR 136

Query: 178 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA 227
            L  ++       ++  +          +A +       + +  A+    
Sbjct: 137 RLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQ 186

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 11/70 (15%), Positives = 20/70 (28%)

Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204
             + P  +  L   +     D  AW  LA+  + +          +  +   P  P    
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 205 AYADVLYTLG 214
               V +T  
Sbjct: 62  RLGRVRWTQQ 71

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.7 bits (141), Expect = 5e-10
 Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 3/142 (2%)

Query: 72  IAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD 131
               +   ++ A    +   + FPE          +L+ +G   EA   Y   +  +P  
Sbjct: 17  NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 76

Query: 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE 191
              +       K   +   A++   + ++   A  DA   LA I+       +A   Y  
Sbjct: 77  ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136

Query: 192 LILSQPTVPLYHLAYADVLYTL 213
            +  +P    +  AY ++ + L
Sbjct: 137 ALKLKPD---FPDAYCNLAHCL 155

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 56.0 bits (134), Expect = 3e-09
 Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 3/122 (2%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
             +   +G   EA + Y   LE  P     H    ++ + QG    A+    + +     
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
             DA+  +      +Q  + A  CY   I   P     H   A +    G +     A  
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP---EAIA 132

Query: 225 YY 226
            Y
Sbjct: 133 SY 134

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 3/105 (2%)

Query: 128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 187
            P           I + QGN   A+    K LE F     A   LA +       ++A  
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
            Y+E I   PT    +    + L  +    ++  A + Y   I +
Sbjct: 65  HYKEAIRISPTFADAYSNMGNTLKEMQ---DVQGALQCYTRAIQI 106

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 25/140 (17%), Positives = 44/140 (31%)

Query: 58  ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA 117
            + P+    +  ++        L  A    K   +  P         G  L+       A
Sbjct: 37  EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGA 96

Query: 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 177
            + Y+  ++ NP     H    +I K  GN P AI      L+      DA+  LA    
Sbjct: 97  LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156

Query: 178 SLQMYKQAAFCYEELILSQP 197
            +  +       ++L+    
Sbjct: 157 IVCDWTDYDERMKKLVSIVA 176

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 16/103 (15%), Positives = 33/103 (32%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G      G W +A+K + +L   +  D        A  ++ G +  A++  +      + 
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207
           +       AE ++ L     A   +          P +    A
Sbjct: 85  EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 3/118 (2%)

Query: 119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 178
              + L   +                 G +  A +           D   +  L     S
Sbjct: 5   GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64

Query: 179 LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK 236
           L +Y+QA   Y    L     P +    A+    LG   ++  A+  + S   L   +
Sbjct: 65  LGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG---DLDGAESGFYSARALAAAQ 119

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 17/145 (11%), Positives = 38/145 (26%), Gaps = 18/145 (12%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNP----------------LDPVLHKRRVAIAKAQGN 147
           +       G   +A   +   +  N                 +   L        K   N
Sbjct: 10  KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69

Query: 148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207
           +  A  +  + L+    + D     AE+ V     K A   YE+++  +      ++   
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129

Query: 208 DVLYTLGGVDNILLAKKYYASTIDL 232
           +  Y     +      +     +  
Sbjct: 130 NYYYLTA--EQEKKKLETDYKKLSS 152

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 53.6 bits (129), Expect = 6e-09
 Identities = 18/144 (12%), Positives = 41/144 (28%), Gaps = 4/144 (2%)

Query: 90  LQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP 149
           + K    S ++     +  +    + +A   Y  LL+  P +    +    +   +G   
Sbjct: 46  VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK 105

Query: 150 TAIEWLNKYLETFMADHDAWRELAEIYV-SLQMYKQAAFCYEELILSQPTVPLYHLAYAD 208
            A+    K L+    +  A   L   Y  + +  K+      + + S   +         
Sbjct: 106 DALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGL 165

Query: 209 VLYTLGGVDNILLAKKYYASTIDL 232
                   +    A+      I  
Sbjct: 166 SKLFTTRYEK---ARNSLQKVILR 186

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.4 bits (105), Expect = 9e-06
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 1/124 (0%)

Query: 80  LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR- 138
            D A    K L ++ P +         +   +G   +A + Y  +L+    +   +    
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129

Query: 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198
                        +E   K L +      A        +    Y++A    +++IL  P+
Sbjct: 130 NYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189

Query: 199 VPLY 202
               
Sbjct: 190 TEAQ 193

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 15/121 (12%), Positives = 40/121 (33%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G +      + +A K +    E +P +   + +   +A  +  F       ++    F  
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
             +     AEI      + +A   Y+  I  +  +   ++  A ++     +      + 
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430

Query: 225 Y 225
           +
Sbjct: 431 F 431

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 4/128 (3%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           GI    K     A +     +E  P         + +A  + +      + +K L+    
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD-RNDSTEYYNYFDKALKLDSN 302

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
           +   +    ++   LQ Y QA   +++     P     ++  A + Y     D+    + 
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDD---CET 359

Query: 225 YYASTIDL 232
            ++     
Sbjct: 360 LFSEAKRK 367

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 10/133 (7%)

Query: 84  KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR----- 138
               +  +K FPE+  V      +L  K  + +A K Y   +E       ++        
Sbjct: 359 TLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417

Query: 139 ----VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194
               +       NF  A   L K  +       A   LA++ +  +   +A   +EE   
Sbjct: 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477

Query: 195 SQPTVPLYHLAYA 207
              T+     A  
Sbjct: 478 LARTMEEKLQAIT 490

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 14/129 (10%), Positives = 39/129 (30%), Gaps = 4/129 (3%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           +    +A  L+ E     +   +      +  +        + +   A E + K +E   
Sbjct: 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LF 267

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223
              +++  +A I        +    +++ +         +     + + L   D    A 
Sbjct: 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ---AG 324

Query: 224 KYYASTIDL 232
           K +    +L
Sbjct: 325 KDFDKAKEL 333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 21/129 (16%), Positives = 35/129 (27%), Gaps = 1/129 (0%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           +G        + +A K Y+  LE    DPV +    A   + G+    +E   K LE   
Sbjct: 12  KGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKP 70

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223
                    A     L  +  A F    L L+            +       +  +    
Sbjct: 71  DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130

Query: 224 KYYASTIDL 232
               +    
Sbjct: 131 GDIDTATAT 139

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 6/126 (4%)

Query: 107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 166
             E+     E     S+L + +P      K   +  KA   F   ++  N+  +      
Sbjct: 180 YDESNEADKELMNGLSNLYKRSPES--YDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237

Query: 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 226
            +                A    ++ I   P V  Y    A ++              Y+
Sbjct: 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYI-YMALIMADRNDSTE---YYNYF 293

Query: 227 ASTIDL 232
              + L
Sbjct: 294 DKALKL 299

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 21/122 (17%), Positives = 47/122 (38%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G  L A G  A+A   + + ++ +P + + + RR  +  A G    A+  L K +   M 
Sbjct: 10  GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD 69

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
              A  +   + +      +A   +++++ S P+      A + ++           A  
Sbjct: 70  FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129

Query: 225 YY 226
            +
Sbjct: 130 AF 131

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 15/125 (12%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---------------QGNFP 149
           G LL  +G   EAE  +  +L+ NP +    +    + KA                 ++ 
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

Query: 150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209
            AI +L+K LE  + D +     AE ++     ++A    +     +          + +
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTL 197

Query: 210 LYTLG 214
            Y LG
Sbjct: 198 YYQLG 202

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 4/115 (3%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPV----LHKRRVAIAKAQGNFPTAIEWLNKYL 159
               L   G + +A   Y S+++  P          +R             AI   ++ L
Sbjct: 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299

Query: 160 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
           +    + +A ++ AE Y+  +MY +A   YE                      L 
Sbjct: 300 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.3 bits (108), Expect = 8e-06
 Identities = 18/159 (11%), Positives = 41/159 (25%), Gaps = 21/159 (13%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
             +  A G    A    + ++           +R  +   QG    A +   K L++  +
Sbjct: 44  ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103

Query: 165 DHDAWRELAEI---------------YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209
           + +     +++                     Y  A    ++++             A+ 
Sbjct: 104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163

Query: 210 LYTLGGVDNILLAKKYYASTIDLTGGKNTKALF--GICL 246
               G       A     +   L    NT+A +      
Sbjct: 164 FIKEGEPRK---AISDLKAASKLK-SDNTEAFYKISTLY 198

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 13/80 (16%), Positives = 24/80 (30%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                      EA +  S +L+  P +    K R      +  +  AI+      E    
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338

Query: 165 DHDAWRELAEIYVSLQMYKQ 184
           D      L +    L+  ++
Sbjct: 339 DQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 13/126 (10%), Positives = 35/126 (27%), Gaps = 16/126 (12%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE---- 160
                 +G   +A     +  +    +     +   +    G+   ++  + + L+    
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220

Query: 161 --------TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-LYHLAY---AD 208
                     +   +   E AE  +    Y  A   YE ++ ++P+V      +      
Sbjct: 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICH 280

Query: 209 VLYTLG 214
                 
Sbjct: 281 CFSKDE 286

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 16/146 (10%)

Query: 84  KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143
            D  KV+Q +  +        G LL  +G   EAE  +  +L+ NP +    + +  + K
Sbjct: 81  PDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139

Query: 144 AQ---------------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 188
           +                G++  AI +L+K LE  + D +     AE ++     ++A   
Sbjct: 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 199

Query: 189 YEELILSQPTVPLYHLAYADVLYTLG 214
            +     +          + + Y LG
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLG 225

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 22/124 (17%), Positives = 50/124 (40%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G  L A G  A+A   + + ++ +P + + + RR  +  A G    A+  L K ++  M 
Sbjct: 33  GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
              A  +   + +      +A   +++++ S P+      A + ++ +         A  
Sbjct: 93  FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN 152

Query: 225 YYAS 228
            + S
Sbjct: 153 AFGS 156

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 4/115 (3%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDP----VLHKRRVAIAKAQGNFPTAIEWLNKYL 159
               L   G + +A   Y S+++  P          +R             AI   ++ L
Sbjct: 263 SAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322

Query: 160 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
           +    + +A ++ AE Y+  +MY +A   YE                      L 
Sbjct: 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 15/93 (16%), Positives = 32/93 (34%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
            +     G +  A      +LE    D  L + R      +G    AI  L    +    
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND 209

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197
           + +A+ +++ +Y  L  ++ +     E +    
Sbjct: 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 19/160 (11%), Positives = 46/160 (28%), Gaps = 19/160 (11%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
             +  A G    A    + +++          +R  +   QG    A +   K L++  +
Sbjct: 67  ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126

Query: 165 DHDAWRELAEI---------------YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209
           +++     +++                     Y  A    ++++             A+ 
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186

Query: 210 LYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF 249
               G       A     +   L    NT+A + I  + +
Sbjct: 187 FIKEGEPRK---AISDLKAASKLK-NDNTEAFYKISTLYY 222

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 15/102 (14%), Positives = 28/102 (27%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                      EA +  S +L+  P +    K R      +  +  AI+      E    
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206
           D      L +    L+  ++  +     +           AY
Sbjct: 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAY 403

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 14/128 (10%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+ L  + L+ ++                 H        A G    A+   +  ++    
Sbjct: 10  GVDLGTENLYFQSMADVEK-----------HLELGKKLLAAGQLADALSQFHAAVDGDPD 58

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
           ++ A+   A +++++   K A     ++I  +       L    +L   G +D    A+ 
Sbjct: 59  NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE---AED 115

Query: 225 YYASTIDL 232
            +   +  
Sbjct: 116 DFKKVLKS 123

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 18/111 (16%), Positives = 35/111 (31%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           E    + +   + +EK Y    E+   D             +G+ P  I ++   +    
Sbjct: 37  ENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP 96

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
            D +AW+ L       +  + A    +  +  QP      +A A       
Sbjct: 97  GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 19/129 (14%), Positives = 33/129 (25%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           EG+    +G          + +  +P D    +          N   AI  L + LE   
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223
            +  A   LA  Y +    + A    +  I   P                  +    +  
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190

Query: 224 KYYASTIDL 232
                  +L
Sbjct: 191 SVLEGVKEL 199

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 20/108 (18%), Positives = 35/108 (32%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+L    G +  A  A+++ L   P D  L  R  A          A+E   + LE    
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212
              +   L    ++L  Y++A   +   +  Q             +  
Sbjct: 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG 327

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 12/114 (10%), Positives = 30/114 (26%), Gaps = 15/114 (13%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE---- 160
            +         +A +A  + ++ NP    L K +            +    +        
Sbjct: 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199

Query: 161 --------TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206
                     M D D    L  ++     + +A   +   +  +P     +  +
Sbjct: 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE---DYSLW 250

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 17/134 (12%), Positives = 33/134 (24%), Gaps = 8/134 (5%)

Query: 84  KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143
                 +++   E +   ++        G            +E        H+    + K
Sbjct: 59  STLNDAVEQG-REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK 117

Query: 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203
              N    ++             +  R   + Y +   +  A   Y E+I   P      
Sbjct: 118 -LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DA 173

Query: 204 LAY---ADVLYTLG 214
             Y   A  L  L 
Sbjct: 174 RGYSNRAAALAKLM 187

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 45.6 bits (109), Expect = 4e-06
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G     K  W  A KAY+ +++  P D   +  R A      +FP AI   NK +E    
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207
              A+   A   ++++ Y  A    +            +   +
Sbjct: 206 FVRAYIRKATAQIAVKEYASALETLDAARTKDAE---VNNGSS 245

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 6/113 (5%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
             +L       +  K   +    NP      +        + ++P A++   + ++    
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY---ADVLYTLG 214
           D   +   A     L  + +A     + I   P    +  AY   A     + 
Sbjct: 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRAYIRKATAQIAVK 221

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 16/110 (14%), Positives = 28/110 (25%), Gaps = 1/110 (0%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                 KG +  A    +  +E        +K         GN    +  L K +E +  
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYY-Q 103

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
                   A+I   L+  ++     E      P             +T  
Sbjct: 104 KSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS 153

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 15/109 (13%), Positives = 28/109 (25%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                  G + +A   + +L   +  D        A  +A G +  AI   +      + 
Sbjct: 28  AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213
           +       AE  +      +A              P +      V   L
Sbjct: 88  EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 48.8 bits (116), Expect = 1e-07
 Identities = 15/117 (12%), Positives = 27/117 (23%), Gaps = 3/117 (2%)

Query: 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 175
                 + L E +                 G +  A             D   +  L   
Sbjct: 5   SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGAC 64

Query: 176 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
             ++  Y  A   Y    +     P +    A+ L   G +     A+       +L
Sbjct: 65  RQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAE---AESGLFLAQEL 118

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 49.8 bits (119), Expect = 3e-08
 Identities = 19/94 (20%), Positives = 29/94 (30%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           EG+ +      AEA  A+ ++ +  P      +              AI  LN       
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197
            D      LA  + +      A       +LSQP
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 11/70 (15%), Positives = 15/70 (21%)

Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204
             N   A        +      +AWR L       +    A        +  P     H 
Sbjct: 30  LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 89

Query: 205 AYADVLYTLG 214
           A A       
Sbjct: 90  ALAVSHTNEH 99

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 5/137 (3%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G +      +  A++ +      NP +   + +   +   QG F  +  + N+    F  
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
             +     AEI      +  A   Y+     +         +  +   +G    +     
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV---QEKIHVGIGPLIGKATILARQSS 433

Query: 225 YYASTIDLTGGKNTKAL 241
              + +D    K   A+
Sbjct: 434 QDPTQLDE--EKFNAAI 448

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 4/183 (2%)

Query: 50  LNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLE 109
           L+       L  +         I       L  A+  ++      P       L  + L 
Sbjct: 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL-ALTLA 287

Query: 110 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW 169
            K    E  K +   ++ NP  P  +  R  +     ++  A E   K       +   +
Sbjct: 288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347

Query: 170 RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229
            +LA +      + ++   + E  L  PT+P     +A++L   G  D    A K Y   
Sbjct: 348 IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDT---AIKQYDIA 404

Query: 230 IDL 232
             L
Sbjct: 405 KRL 407

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 24/104 (23%), Positives = 35/104 (33%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G        + EA K Y   +E +P +PV +    A   + G+    IE+  K LE    
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 208
              A    A    SL  +  A F    L L+            +
Sbjct: 92  HSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLE 135

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 4/103 (3%)

Query: 116 EAEKAYSSLLEDNPLDP----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 171
             E   + L   +P       V  K R        NF  AI++    +E    +   +  
Sbjct: 5   NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN 64

Query: 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
           ++  Y+S    ++      + +  +P      L  A    +LG
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 19/132 (14%), Positives = 32/132 (24%), Gaps = 6/132 (4%)

Query: 103 LEGILLEAKGLWAEAEKAYSSLLEDNP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160
           LE   +     +  A    S  L+      D         + K+   + + +        
Sbjct: 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP 237

Query: 161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220
                  A       +        A    +E I   PT   Y    A  L          
Sbjct: 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI-FLALTLADKENSQ--- 293

Query: 221 LAKKYYASTIDL 232
              K++   +DL
Sbjct: 294 EFFKFFQKAVDL 305

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 16/119 (13%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI----------------AKAQGNF 148
             +L  +G +  A K Y        +   +H     +                   +  F
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207
             AI+ L K  E       A   LA++ + ++   +A   +E+  +   T+     A  
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 18/147 (12%), Positives = 43/147 (29%), Gaps = 2/147 (1%)

Query: 83  AKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142
             D +   +  + E+  V        + +    +  +    +L    ++      +    
Sbjct: 53  LVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKAL 112

Query: 143 KAQGNFPT-AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201
               ++   A   L+K ++      +AW +L E+Y        A  C+   +        
Sbjct: 113 NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVS 172

Query: 202 YHLAYADVLYTLGGVDNILLAKKYYAS 228
                + VL  L        ++    S
Sbjct: 173 LQ-NLSMVLRQLQTDSGDEHSRHVMDS 198

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 3/125 (2%)

Query: 80  LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL--WAEAEKAYSSLLEDNPLDPVLHKR 137
           LD+A+  +K +Q Q  ++         +  A G     +A   +  + +      +L   
Sbjct: 146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG 205

Query: 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCY-EELILSQ 196
           + A   AQG +  A   L + L+      +    L  +   L    +    Y  +L  + 
Sbjct: 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265

Query: 197 PTVPL 201
            + P 
Sbjct: 266 RSHPF 270

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 9/110 (8%), Positives = 20/110 (18%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
               +A                  P   V         +A       +  L +       
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              A         +L+  ++      +     P   +   +       L 
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 256

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 10/113 (8%), Positives = 20/113 (17%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
               +A                  P   V         +A       +  L +       
Sbjct: 79  DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 138

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217
              A         +L+  +       +     P   +   +       L  V 
Sbjct: 139 QVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQ 191

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 10/112 (8%), Positives = 21/112 (18%), Gaps = 7/112 (6%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                  P   V         +A       +  L +       
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
              A         +L+  ++      +     P            + +  G 
Sbjct: 377 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTP-------EQVVAIASHDGG 421

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.5 bits (108), Expect = 9e-06
 Identities = 10/112 (8%), Positives = 21/112 (18%), Gaps = 7/112 (6%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                  P   V         +A       +  L +       
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
              A         +L+  ++      +     P            + +  G 
Sbjct: 241 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTP-------QQVVAIASNSGG 285

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 9/110 (8%), Positives = 20/110 (18%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
               +A                  P   V         +A       +  L +       
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE 172

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              A         +L+  ++      +     P   +   +       L 
Sbjct: 173 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 222

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 10/110 (9%), Positives = 22/110 (20%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                  P   V         +A       +  L +       
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 274

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              A    +    +L+  ++      +     P   +   +       L 
Sbjct: 275 QVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 324

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 10/110 (9%), Positives = 22/110 (20%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                  P   V         +A       +  L +       
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              A         +L+  ++      +     P   +   ++      L 
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 358

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 14/120 (11%), Positives = 25/120 (20%), Gaps = 6/120 (5%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                  P   V         +A       +  L +       
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
              A         +L+         +  + +          +   L  LGG   +   KK
Sbjct: 445 QVVAIASNGGGRPALESIVAQLSRPDPALAALTN------DHLVALACLGGRPALDAVKK 498

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 9/113 (7%), Positives = 21/113 (18%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
               +A                  P   V         +A       +  L +       
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE 410

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217
              A         +L+  ++      +     P   +   +       L  + 
Sbjct: 411 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIV 463

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 12/113 (10%), Positives = 27/113 (23%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G +   + + A       + L   P   V         +A       +  L +       
Sbjct: 45  GGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 104

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217
              A         +L+  ++      +     P   +   ++      L  V 
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQ 157

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 4e-07
 Identities = 44/288 (15%), Positives = 81/288 (28%), Gaps = 95/288 (32%)

Query: 12  RLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKK---RSAL--------- 59
           R +   D        ++ L        PD+V    L  L+   +   R  L         
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 60  -------GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVL----QKQ-------FPESKRVG 101
                  G   W  ++ V+   +      + +  + VL     ++       FP S  + 
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLT----TIIESSLNVLEPAEYRKMFDRLSVFPPSAHI- 387

Query: 102 RLEGILLEAKGLWAEAEK----------AYSSLLEDNP-----------LD--------P 132
               ILL    +W +  K             SL+E  P           L+         
Sbjct: 388 --PTILLSL--IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 133 VLHKR---RVAIAKAQGNFPTAIEWLNKYLETFMADH-------DAWRELAEIYVSLQMY 182
            LH+       I K   +      +L++Y  + +  H       +       +++  +  
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 183 KQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230
           +Q                + H + A      G + N L   K+Y   I
Sbjct: 504 EQK---------------IRHDSTA--WNASGSILNTLQQLKFYKPYI 534

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 38/276 (13%), Positives = 67/276 (24%), Gaps = 101/276 (36%)

Query: 1   MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKV--LRHGLSILNDPKKRSA 58
           M+T+    Q +RL N              +  K  V R      LR  L  L   K    
Sbjct: 107 MMTRMYIEQRDRLYNDNQ-----------VFAKYNVSRLQPYLKLRQALLELRPAKN--- 152

Query: 59  LGPDVWTLYEQVSIAAMD-C--QCL--DVAKDCIKVLQKQFP------ESKRVGRLEGIL 107
                      V I  +       +  DV       +Q +          K     E +L
Sbjct: 153 -----------VLIDGVLGSGKTWVALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH- 166
              + L  + +  ++S  + +                  N    I  +   L   +    
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSS-----------------NIKLRIHSIQAELRRLLKSKP 242

Query: 167 ---------DAW-RELAEIYVSLQMYKQAAF---CYEELILSQPTVPLYHLAYADVLYTL 213
                    +    +              AF   C + L+ ++         +  V    
Sbjct: 243 YENCLLVLLNVQNAKAWN-----------AFNLSC-KILLTTR---------FKQV---- 277

Query: 214 GGVDNILLAKKYYASTIDLTGG---KNTKALFGICL 246
              D +  A   + S    +        K+L    L
Sbjct: 278 --TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 8/139 (5%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           EG+    +G    A   + + ++ +P      +              AI  L + LE   
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG-GVDNILLA 222
            +  A   LA  + +  + +QA     + +   P        YA ++     G     L 
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-------YAHLVTPAEEGAGGAGLG 182

Query: 223 KKYYASTIDLTGGKNTKAL 241
                    L+     +  
Sbjct: 183 PSKRILGSLLSDSLFLEVK 201

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 95  PESKRVGRLEGILLEAKGLWAEA-----EKAYSSLLEDNPL-DPVLHKRRVAIAKAQGNF 148
            E + + + +         + +      +K Y    E+NPL D             +G+ 
Sbjct: 22  AELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQ-FEEENPLRDHPQPFEEGLRRLQEGDL 80

Query: 149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 208
           P A+      ++      +AW+ L       +    A       +  +P      +A A 
Sbjct: 81  PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV 140

Query: 209 VLYTLG 214
                 
Sbjct: 141 SFTNES 146

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+L    G + +A   +++ L   P D +L  +  A          A+    + LE    
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH----LAYADVLYTLG 214
              +   L    ++L  +++A   + E +  Q               ++  TL 
Sbjct: 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.8 bits (116), Expect = 6e-07
 Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 24/144 (16%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLH-------------------KRRVAIAKAQ 145
                 K    +A +     LE  P +  LH                          K  
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313

Query: 146 GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP---LY 202
                A+  L K  E           LA ++     Y++A + +++    + T     L 
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373

Query: 203 HLAYADVLYTLGGVDNILLAKKYY 226
           HL Y +             A  ++
Sbjct: 374 HLRYGNFQLYQMK--CEDKAIHHF 395

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 26/194 (13%), Positives = 53/194 (27%), Gaps = 29/194 (14%)

Query: 59  LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK------QFPESKR-VGRLEGILLEAK 111
             P        ++IA+        +++ I  L++           K  +      + E  
Sbjct: 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG 226

Query: 112 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 171
               E EK     LE  P    + +      + +     AIE L K LE    +     +
Sbjct: 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286

Query: 172 LAEIYVS-------------------LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212
           +   Y +                   L++   A    ++   +   +       A +   
Sbjct: 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346

Query: 213 LGGVDNILLAKKYY 226
                    A+ Y+
Sbjct: 347 AD---QYEEAEYYF 357

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 20/127 (15%), Positives = 35/127 (27%), Gaps = 10/127 (7%)

Query: 107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT---AIEWLNKYLETFM 163
           L         A+  +   LE  P +P         +    N+P    AI+ L + +    
Sbjct: 147 LKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206

Query: 164 ADHDAWRELAEIYVSLQM----YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219
            +      LA     ++       +     EE +   P V     + A         D  
Sbjct: 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDK- 265

Query: 220 LLAKKYY 226
             A +  
Sbjct: 266 --AIELL 270

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 21/123 (17%), Positives = 33/123 (26%), Gaps = 7/123 (5%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           EG+ +      AEA  A+ ++ +  P      +              AI  LN       
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223
            D      LA  + +      A       +LSQP        Y  +       D  +   
Sbjct: 87  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-------YEQLGSVNLQADVDIDDL 139

Query: 224 KYY 226
              
Sbjct: 140 NVQ 142

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 13/103 (12%), Positives = 20/103 (19%)

Query: 112 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 171
           G   +    Y     +  +                N   A        +      +AWR 
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
           L       +    A        +  P     H A A       
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 15/140 (10%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+L      +  A       +E  P D  L  +  A          A++  N+ L+    
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD--------VLYTLGGV 216
                  +A  Y ++  Y  AA      I  Q           +        +      +
Sbjct: 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG---GTTPTGEASREATRSMWDFFRML 295

Query: 217 DNIL----LAKKYYASTIDL 232
            N++    L +  YA  ++ 
Sbjct: 296 LNVMNRPDLVELTYAQNVEP 315

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 15/117 (12%), Positives = 26/117 (22%), Gaps = 18/117 (15%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA---------------KAQGNFP 149
            +    +     A  +  + L   P    L    +                   A   + 
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206
                L+  LE    D      L  +Y     Y  AA      +  +P        +
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD---DAQLW 209

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 10/122 (8%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
                  G + +A +A++  +E+N  D + +     +  +      A+ + +K LE   +
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
              A+     +YV  +MYK+A   +E+ + +            D+ Y LG    +L+  +
Sbjct: 90  AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-------NGDLFYMLG---TVLVKLE 139

Query: 225 YY 226
             
Sbjct: 140 QP 141

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 16/125 (12%), Positives = 38/125 (30%), Gaps = 13/125 (10%)

Query: 115 AEAEKAYSSLLEDNP----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR 170
             +   +       P    +  +   +++      G++  A E   K +E    D   + 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 171 ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY---ADVLYTLGGVDNILLAKKYYA 227
             A +  S+   ++A   Y++ +    +      AY    +V            AK  + 
Sbjct: 62  NFANLLSSVNELERALAFYDKALELDSS---AATAYYGAGNVYVVKEMYKE---AKDMFE 115

Query: 228 STIDL 232
             +  
Sbjct: 116 KALRA 120

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 18/110 (16%), Positives = 31/110 (28%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G +L        A       +E N  D     +       +G    A+       E    
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
             DA+      Y   +  ++A    ++ I  QP   L   A   + +   
Sbjct: 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 39.0 bits (92), Expect = 6e-04
 Identities = 19/113 (16%), Positives = 32/113 (28%), Gaps = 6/113 (5%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
             LL +      A   Y   LE +      +     +   +  +  A +   K L   M 
Sbjct: 64  ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY---ADVLYTLG 214
           + D +  L  + V L+  K A    +  +           A       L   G
Sbjct: 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN---DTEARFQFGMCLANEG 173

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 10/110 (9%), Positives = 22/110 (20%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                  P   V         +A       +  L +       
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQV 597

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              A         +L+  ++      +     P   +   ++      L 
Sbjct: 598 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE 647

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 11/115 (9%), Positives = 23/115 (20%), Gaps = 7/115 (6%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                  P   V         +A       +  L +       
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 360

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219
              A         +L+  ++      +     P            + + GG   +
Sbjct: 361 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD-------QVVAIASNGGKQAL 408

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 9/110 (8%), Positives = 22/110 (20%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
               +A                  P   V     +   +A       +  L +       
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPD 292

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
              A         +L+  ++      +     P   +   ++      L 
Sbjct: 293 QVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALE 342

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 11/112 (9%), Positives = 24/112 (21%), Gaps = 7/112 (6%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G   +A                   +  V     +   +A       +  L +      A
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
              A         +L+  ++      +     P            + + GG 
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTP-------DQVVAIASNGGG 676

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 12/129 (9%), Positives = 25/129 (19%), Gaps = 3/129 (2%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
               +A                  P   V         +A       +  L +       
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQE 699

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
              A         +L+  ++      +     P      +A A        ++ +     
Sbjct: 700 QVVAIASNNGGKQALETVQRLLPVLCQAHGLTPD---QVVAIASNGGGKQALETVQRLLP 756

Query: 225 YYASTIDLT 233
                  LT
Sbjct: 757 VLCQAHGLT 765

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 10/112 (8%), Positives = 21/112 (18%), Gaps = 7/112 (6%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
               +A                  P   V         +A       +  L +       
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD 326

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
              A         +L+  ++      +     P            + + GG 
Sbjct: 327 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTP-------DQVVAIASNGGG 371

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 14/116 (12%), Positives = 26/116 (22%), Gaps = 9/116 (7%)

Query: 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160
            R     +EA      A     + L   P   V         +A       +  L +   
Sbjct: 163 KRGGVTAMEAVHASRNA--LTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHG 220

Query: 161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
              A   A         +L+  ++      +     P            + +  G 
Sbjct: 221 LTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP-------DQVVAIASNIGG 269

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 8/112 (7%), Positives = 19/112 (16%), Gaps = 7/112 (6%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
               +A                  P   V         +A       +  L +       
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
              A         +L+  ++      +                  + +  G 
Sbjct: 564 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQV-------QVVAIASNIGG 608

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 15/89 (16%), Positives = 29/89 (32%)

Query: 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203
           +Q N    ++ L   +     + + W  L E Y+    Y  +   Y + +  +      +
Sbjct: 22  SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY 81

Query: 204 LAYADVLYTLGGVDNILLAKKYYASTIDL 232
            A A VLY           +      + L
Sbjct: 82  AALATVLYYQASQHMTAQTRAMIDKALAL 110

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 11/93 (11%), Positives = 31/93 (33%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G++       A+A++ +   L  N   P +      +   +  +  A ++ + + +    
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197
           +  +      +    +    AA    +L    P
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 5/130 (3%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM- 163
            ++ + +     A++ Y   L  +  +  +          Q  +  A + L +  +  + 
Sbjct: 78  AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY 137

Query: 164 -ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 222
                 +  L  + + ++   QA   +E+ +      P   L  AD+LY        + A
Sbjct: 138 PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER---EYVPA 194

Query: 223 KKYYASTIDL 232
           ++YY      
Sbjct: 195 RQYYDLFAQG 204

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 9/93 (9%)

Query: 145 QGNFPTAIEWLNKYLETFMADH---DAWRELAEIYVSLQMYKQAAFCYEELILSQPT--- 198
            G +  A +    +LE +       +A   L E Y + + ++ A   + +L+   PT   
Sbjct: 15  NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK 74

Query: 199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTID 231
                L      Y  G       A++       
Sbjct: 75  AAGGLLKLGLSQYGEGKNTE---AQQTLQQVAT 104

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 25/128 (19%), Positives = 37/128 (28%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+L ++ GL A A   +S  L   P  P +           GNF  A E  +  LE    
Sbjct: 50  GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
            + A              K A           P  P   L        L       + K+
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169

Query: 225 YYASTIDL 232
           ++  +   
Sbjct: 170 HFEKSDKE 177

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 9/145 (6%)

Query: 91  QKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT 150
              + +S+ +       L+ + + A  E+  +S    +     L   R  +  + G    
Sbjct: 2   NTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRAL 61

Query: 151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY---A 207
           A    ++ L       + +  L         +  A   ++ ++   PT   Y+ A+    
Sbjct: 62  ARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAHLNRG 118

Query: 208 DVLYTLGGVDNILLAKKYYASTIDL 232
             LY  G      LA+    +    
Sbjct: 119 IALYYGGRDK---LAQDDLLAFYQD 140

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 3/106 (2%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+       +  A      + E NP++  +  R        G F  AI+     L     
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210
           +    R +A  Y  +  +++A   +++            +  A V 
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG---ASVELALVP 185

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.3 bits (98), Expect = 7e-05
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 7/110 (6%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           GI     G +++A      + + +  D  +           G      E L + L     
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74

Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
           +      L   YV +Q Y  A     ++  + P          +V + LG
Sbjct: 75  NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-------NFNVRFRLG 117

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 42.1 bits (98), Expect = 7e-05
 Identities = 22/198 (11%), Positives = 52/198 (26%), Gaps = 10/198 (5%)

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
           P +  L    +   +             + +K+  + + +   +    +        E  
Sbjct: 44  PSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE------LAE 174
                 +            A    + ++   I  L K L   +   D ++       +A 
Sbjct: 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163

Query: 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV----DNILLAKKYYASTI 230
           IY      K+    +E+++     +         V Y              +       I
Sbjct: 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223

Query: 231 DLTGGKNTKALFGICLVM 248
           +++   N+ AL G     
Sbjct: 224 EISCRINSMALIGQLYYQ 241

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 1/117 (0%)

Query: 98  KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 157
             + R        KG   +A          NP    LH +R  +    G    A   L +
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

Query: 158 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
            L       +    LAE+Y+S+    +A   Y + +   P      + YA  L   G
Sbjct: 144 ALA-LEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 18/123 (14%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
           G+ L A G +  A   +   L++NP DP             G    A+E     +     
Sbjct: 12  GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71

Query: 165 DHDAWRELAEIYVSLQM-----------YKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213
               +  L+E YV+L              +QA    ++     P        YA +    
Sbjct: 72  YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-------YAPLHLQR 124

Query: 214 GGV 216
           G V
Sbjct: 125 GLV 127

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 42.4 bits (99), Expect = 9e-05
 Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 13/164 (7%)

Query: 61  PDVWTLYEQ--VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAE 118
             + T + Q    +   D + L+ A + +  + +  PE       + ++   +      +
Sbjct: 194 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLD 253

Query: 119 KAYSSLLE----------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA 168
           +   + L           +     ++++ +   A  +G    + + +N  ++  M     
Sbjct: 254 EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLN 312

Query: 169 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212
           +  L ++Y    M ++AA  Y      +P     +     +  T
Sbjct: 313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQT 356

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 4/122 (3%)

Query: 106 ILLEAKGLWAEAEKAYSSLLED--NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
            L       AE+   +   L D   P   + +  +   +  QG F  A  +L + L    
Sbjct: 85  FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP 144

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223
               A++ELA   +       A + +++       +    L           + N   A 
Sbjct: 145 QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG--WKIAKALGNAQAAY 202

Query: 224 KY 225
           +Y
Sbjct: 203 EY 204

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 99  RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY 158
           +     G L  A+      E    +    +      +K RV   +  G+   A  WL   
Sbjct: 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241

Query: 159 LETFMADH----DAWRELAEIYVSLQMYKQAAFCYEELI 193
            +   A++      WR +A   + L  ++ A    EEL 
Sbjct: 242 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 145 QGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201
            G    A+ +  K + + +      + +  L   + +L  Y++A       +   P    
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 202 YHLAYADVLYTLG 214
             + YA VLY LG
Sbjct: 63  LRVFYAMVLYNLG 75

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
             +L+       A K     +E N  +  V H RRV +   Q +    + ++   +E   
Sbjct: 104 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197
            ++  W     +   L+   Q      +++    
Sbjct: 164 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 17/150 (11%), Positives = 41/150 (27%), Gaps = 16/150 (10%)

Query: 105 GILLEAKGLWAEAEKAYSSLLE-----DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYL 159
           G++L+      EA +              P    +   R        +   A+    +  
Sbjct: 83  GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAA 142

Query: 160 ETFMADHD------AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213
             F  +           + + + V  Q + +AA   ++       +  Y           
Sbjct: 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC-YKKCIAQ 201

Query: 214 GGV----DNILLAKKYYASTIDLTGGKNTK 239
             V     + + A+K    +  + G   ++
Sbjct: 202 VLVQLHRADYVAAQKCVRESYSIPGFSGSE 231

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 9/123 (7%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           EG+L   K  W  A  A+S++         +      +     N   A +   + +    
Sbjct: 12  EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223
               A+ +   +Y   + Y  A    +E ++         + Y      LG    +   +
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR--GNQLIDY----KILGLQFKLFACE 122

Query: 224 KYY 226
             Y
Sbjct: 123 VLY 125

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 15/87 (17%), Positives = 26/87 (29%)

Query: 111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR 170
              + EA   Y   +  NPL  V +  R            A+    + LE       A  
Sbjct: 17  GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76

Query: 171 ELAEIYVSLQMYKQAAFCYEELILSQP 197
            L +  + ++ Y +A    +       
Sbjct: 77  FLGQCQLEMESYDEAIANLQRAYSLAK 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.97
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.97
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.96
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.96
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.95
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.95
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.94
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.94
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.94
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.93
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.93
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.93
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.93
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.93
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.93
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.93
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.92
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.92
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.92
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.92
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.92
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.92
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.92
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.91
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.91
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.91
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.91
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.91
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.91
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.91
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.91
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.91
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.9
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.9
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.9
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.89
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.89
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.89
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.89
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.89
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.88
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.88
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.88
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.88
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.88
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.87
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.87
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.87
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.86
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.86
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.85
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.85
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.85
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.85
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.85
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.85
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.85
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.84
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.84
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.84
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.84
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.83
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.83
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.82
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.82
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.82
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.82
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.82
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.81
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.81
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.8
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.8
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.8
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.8
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.8
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.79
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.79
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.79
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.79
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.79
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.79
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.79
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.79
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.79
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.79
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.79
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.78
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.78
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.78
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.78
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.78
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.78
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.78
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.78
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.77
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.77
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.77
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.77
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.77
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.77
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.77
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.76
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.76
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.76
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.76
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.75
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.75
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.75
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.75
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.74
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.74
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.74
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.73
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.73
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.73
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.73
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.72
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.72
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.72
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.71
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.71
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.71
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.71
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.71
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.71
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.71
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.71
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.71
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.7
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.7
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.69
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.69
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.69
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.68
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.68
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.68
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.68
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.68
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.68
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.67
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.66
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.66
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.66
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.65
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.65
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.65
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.65
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.64
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.64
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.63
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.62
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.62
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.61
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.61
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.61
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.59
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.59
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.58
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.58
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.57
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.56
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.53
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.49
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.48
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.47
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.47
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.47
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.46
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.45
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.44
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.43
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.39
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.37
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.37
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.36
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.35
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.34
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.33
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.33
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.31
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.3
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.29
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.29
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.25
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.24
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.22
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.17
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.16
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.05
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.02
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.92
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.9
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.89
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.89
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.86
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.84
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.84
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.83
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.79
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.7
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.7
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.55
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.52
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.48
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.36
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.32
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.14
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.0
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.91
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.89
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.78
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.72
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.69
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.55
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.52
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	97.13
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	97.01
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.91
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.89
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.86
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.78
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.73
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.71
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.69
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.63
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.56
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.45
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.35
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	96.32
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.31
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.3
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.98
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.86
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.79
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.75
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.71
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.69
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.69
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	91.63
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.32
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.45
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	88.21
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	83.79
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	81.83

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.97  E-value=3.7e-29  Score=184.74  Aligned_cols=178  Identities=16%  Similarity=0.051  Sum_probs=170.3

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  141 (263)
                      +...+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|++..++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH
Q 024712          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  221 (263)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~  221 (263)
                      +...++++.|+..+.+++..+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|+   +++
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~---~~~  159 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL---RDE  159 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC---HHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999   999


Q ss_pred             HHHHHHHhhccCCCcchhHHHh
Q 024712          222 AKKYYASTIDLTGGKNTKALFG  243 (263)
Q Consensus       222 A~~~~~~al~~~~~~~~~~~~~  243 (263)
                      |+.+|+++++++|+ ++....+
T Consensus       160 A~~~~~~al~~~p~-~a~~~la  180 (184)
T 3vtx_A          160 AVKYFKKALEKEEK-KAKYELA  180 (184)
T ss_dssp             HHHHHHHHHHTTHH-HHHHCSC
T ss_pred             HHHHHHHHHhCCcc-CHHHHHH
Confidence            99999999999996 5544333

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.97  E-value=9.6e-29  Score=187.53  Aligned_cols=185  Identities=12%  Similarity=0.015  Sum_probs=176.1

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (263)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  140 (263)
                      |..+.++..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-----------CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712          141 IAKAQ-----------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (263)
Q Consensus       141 ~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (263)
                      ++...           |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~  160 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence            99999           999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          210 LYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       210 ~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      +...|+   +++|+..|+++++++|+ +..+++.++.+...
T Consensus       161 ~~~~g~---~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~  197 (217)
T 2pl2_A          161 YLSMGR---LDEALAQYAKALEQAPK-DLDLRVRYASALLL  197 (217)
T ss_dssp             HHHHTC---HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC
T ss_pred             HHHcCC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence            999999   99999999999999997 88888887777654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.96  E-value=1e-26  Score=176.32  Aligned_cols=184  Identities=19%  Similarity=0.091  Sum_probs=161.7

Q ss_pred             cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----
Q 024712           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK----  111 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----  111 (263)
                      .++.++++......+..       +|+.+.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...    
T Consensus        18 ~g~~~~A~~~~~~al~~-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~   90 (217)
T 2pl2_A           18 LGRYDAALTLFERALKE-------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQA   90 (217)
T ss_dssp             TTCHHHHHHHHHHHHTT-------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh
Confidence            45567777777776655       8899999999999999999999999999999999999999999999999999    


Q ss_pred             -------CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHH
Q 024712          112 -------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ  184 (263)
Q Consensus       112 -------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~  184 (263)
                             |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.++...|++++
T Consensus        91 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~  169 (217)
T 2pl2_A           91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDE  169 (217)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHH
T ss_pred             hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHH
Confidence                   999999999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712          185 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (263)
Q Consensus       185 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al  230 (263)
                      |+..|+++++.+|+++.++..+|.++...|+   +++|+..|+++-
T Consensus       170 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~  212 (217)
T 2pl2_A          170 ALAQYAKALEQAPKDLDLRVRYASALLLKGK---AEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHTC------------------
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHccC---HHHHHHHHHHHh
Confidence            9999999999999999999999999999999   999999998864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.96  E-value=5.7e-27  Score=191.62  Aligned_cols=191  Identities=12%  Similarity=0.074  Sum_probs=179.1

Q ss_pred             ccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcCCCCHHH
Q 024712           56 RSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL-WAEAEKAYSSLLEDNPLDPVL  134 (263)
Q Consensus        56 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~  134 (263)
                      ...++|+...++..++.++...|++++|+..+++++..+|++..++..+|.++...|+ +++|+..|++++.++|++..+
T Consensus        89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a  168 (382)
T 2h6f_A           89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV  168 (382)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence            3456888999999999999999999999999999999999999999999999999997 999999999999999999999


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-c
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-L  213 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~  213 (263)
                      |..+|.++...|++++|+..|+++++++|++..+|+.+|.++...|++++|+.+|+++++++|++..+|.++|.++.. .
T Consensus       169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~  248 (382)
T 2h6f_A          169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT  248 (382)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 5


Q ss_pred             CCCCcHHHH-----HHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          214 GGVDNILLA-----KKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       214 g~~~~~~~A-----~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      |.   .++|     +.+|.+++.++|+ +..+|+.+..+...
T Consensus       249 ~~---~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~  286 (382)
T 2h6f_A          249 GY---NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD  286 (382)
T ss_dssp             CS---CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT
T ss_pred             Cc---chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHc
Confidence            55   4777     5999999999997 77788777766554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.95  E-value=1.2e-26  Score=203.25  Aligned_cols=174  Identities=14%  Similarity=0.065  Sum_probs=168.7

Q ss_pred             cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (263)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  138 (263)
                      ..|+...++.++|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++.++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCc
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN  218 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  218 (263)
                      |.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++...|+   
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~---  160 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD---  160 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             HHHHHHHHHHhhccCCC
Q 024712          219 ILLAKKYYASTIDLTGG  235 (263)
Q Consensus       219 ~~~A~~~~~~al~~~~~  235 (263)
                      +++|.+.|++++++.|+
T Consensus       161 ~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          161 WTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChh
Confidence            99999999999987653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.95  E-value=6.1e-26  Score=173.13  Aligned_cols=180  Identities=11%  Similarity=-0.004  Sum_probs=168.9

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  140 (263)
                      ..+..+..+|..++..|++++|+..|+++++..| .+..+++.+|.++...|++++|+..+++++..+|++..++..+|.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            3457889999999999999999999999999998 888999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Q 024712          141 IAKAQGNFPTAIEWLNKYLETFMADH-------DAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLAYADVLY  211 (263)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~  211 (263)
                      ++...|++++|+..++++++.+|+++       .++..+|.++...|++++|+..|+++++.+|+  ++.++..+|.+++
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  164 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY  164 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence            99999999999999999999999998       66999999999999999999999999999999  8999999999999


Q ss_pred             hcCCCCcH---------------------------HHHHHHHHHhhccCCCcchhHHHhHH
Q 024712          212 TLGGVDNI---------------------------LLAKKYYASTIDLTGGKNTKALFGIC  245 (263)
Q Consensus       212 ~~g~~~~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~l~  245 (263)
                      ..|+   .                           ++|+.+|+++++++|+ +..+...+.
T Consensus       165 ~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~  221 (228)
T 4i17_A          165 NNGA---DVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQD  221 (228)
T ss_dssp             HHHH---HHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HHHH---HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence            9998   7                           9999999999999997 655554443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.95  E-value=1.4e-25  Score=183.30  Aligned_cols=215  Identities=10%  Similarity=0.077  Sum_probs=191.7

Q ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCcHHHH
Q 024712           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC-LDVAKDCIKVLQKQFPESKRVG  101 (263)
Q Consensus        23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~  101 (263)
                      .++.++..+... ..+.+.++.....++..       +|+...+|..+|.++...|+ +++|+..|++++..+|+++.++
T Consensus        98 ~a~~~lg~~~~~-~g~~~~Al~~~~~al~l-------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           98 DVYDYFRAVLQR-DERSERAFKLTRDAIEL-------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             HHHHHHHHHHHH-TCCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHH-CCChHHHHHHHHHHHHh-------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            355555555433 35677777777776655       88999999999999999996 9999999999999999999999


Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cc
Q 024712          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS-LQ  180 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g  180 (263)
                      ..+|.++...|++++|+..|++++.++|++..+|..+|.++...|++++|+..++++++++|++..+|+.+|.++.. .|
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~  249 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  249 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 56


Q ss_pred             cHHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          181 MYKQA-----AFCYEELILSQPTVPLYHLAYADVLYTLG--GVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       181 ~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      .+++|     +.+|++++.++|++..+|..+|.++...|  +   +++|+..+.++ +.+|+ ...++..++.++..
T Consensus       250 ~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~---~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~  321 (382)
T 2h6f_A          250 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK---YPNLLNQLLDL-QPSHS-SPYLIAFLVDIYED  321 (382)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGG---CHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccc---hHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHH
Confidence            65777     59999999999999999999999999988  6   89999999998 88886 77777777766544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=1e-24  Score=179.09  Aligned_cols=186  Identities=18%  Similarity=0.119  Sum_probs=116.9

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      .|+...++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|
T Consensus       165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  244 (388)
T 1w3b_A          165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA  244 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence            55556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcH
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~  219 (263)
                      .++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|+++++..|.++.++..+|.++...|+   +
T Consensus       245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~  321 (388)
T 1w3b_A          245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN---I  321 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---H
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC---H
Confidence            6666666666666666666666666666666666666666666666666666666666666666666666666666   6


Q ss_pred             HHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          220 LLAKKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       220 ~~A~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                      ++|+..|+++++.+|+ +..+++.++.++.
T Consensus       322 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~  350 (388)
T 1w3b_A          322 EEAVRLYRKALEVFPE-FAAAHSNLASVLQ  350 (388)
T ss_dssp             HHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Confidence            6666666666666664 4445554444433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.95  E-value=3.3e-24  Score=171.57  Aligned_cols=186  Identities=16%  Similarity=0.099  Sum_probs=172.9

Q ss_pred             cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (263)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  138 (263)
                      ..|....++..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+..+++++..+|.++.++..+
T Consensus       120 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  199 (330)
T 3hym_B          120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV  199 (330)
T ss_dssp             TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            36777888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLETF---------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (263)
                      |.++...|++++|+..+++++...         |..+.++..+|.++...|++++|+.+++++++.+|+++.++..+|.+
T Consensus       200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~  279 (330)
T 3hym_B          200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYI  279 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence            999999999999999999999987         67778999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHH
Q 024712          210 LYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVM  248 (263)
Q Consensus       210 ~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~  248 (263)
                      +...|+   +++|..+|+++++++|+ +..++..++.+.
T Consensus       280 ~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~  314 (330)
T 3hym_B          280 HSLMGN---FENAVDYFHTALGLRRD-DTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHTC---HHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred             HHHhcc---HHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence            999999   99999999999999996 777887777776

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=1.6e-24  Score=177.99  Aligned_cols=187  Identities=17%  Similarity=0.116  Sum_probs=134.6

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      +|+...++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++..+|++..++..+|
T Consensus       131 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  210 (388)
T 1w3b_A          131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG  210 (388)
T ss_dssp             CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            55666666666777766777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcH
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~  219 (263)
                      .++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|+   +
T Consensus       211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~  287 (388)
T 1w3b_A          211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS---V  287 (388)
T ss_dssp             HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC---H
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---H
Confidence            7777777777777777777777777777777777777777777777777777777777777777777777777777   7


Q ss_pred             HHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          220 LLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       220 ~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      ++|+..|+++++.+|+ +...+..++.++..
T Consensus       288 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~  317 (388)
T 1w3b_A          288 AEAEDCYNTALRLCPT-HADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhCcc-cHHHHHHHHHHHHH
Confidence            7777777777777775 55566555555433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.94  E-value=6.5e-25  Score=185.02  Aligned_cols=189  Identities=14%  Similarity=0.012  Sum_probs=178.7

Q ss_pred             cccCcchHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHH
Q 024712           57 SALGPDVWTLYEQVSIAAMDCQCL-DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH  135 (263)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  135 (263)
                      ....|....++..+|.++...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+ ..++
T Consensus        95 ~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~  173 (474)
T 4abn_A           95 LGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSL  173 (474)
T ss_dssp             HTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHH
T ss_pred             hccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHH
Confidence            344778899999999999999999 99999999999999999999999999999999999999999999999999 7999


Q ss_pred             HHHHHHHHHc---------CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--------ccHHHHHHHHHHHHhhCC-
Q 024712          136 KRRVAIAKAQ---------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL--------QMYKQAAFCYEELILSQP-  197 (263)
Q Consensus       136 ~~l~~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p-  197 (263)
                      ..+|.++...         |++++|+..++++++.+|+++.+|..+|.++...        |++++|+.+|+++++++| 
T Consensus       174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  253 (474)
T 4abn_A          174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK  253 (474)
T ss_dssp             HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC
Confidence            9999999999         9999999999999999999999999999999999        999999999999999999 


Q ss_pred             --CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          198 --TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       198 --~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                        .++.++..+|.++...|+   +++|+..|+++++++|+ +..++..+..+...
T Consensus       254 ~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~  304 (474)
T 4abn_A          254 ASSNPDLHLNRATLHKYEES---YGEALEGFSQAAALDPA-WPEPQQREQQLLEF  304 (474)
T ss_dssp             GGGCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence              999999999999999999   99999999999999997 77777766666544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.94  E-value=1.4e-24  Score=166.51  Aligned_cols=200  Identities=12%  Similarity=0.011  Sum_probs=180.0

Q ss_pred             CChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHH
Q 024712           37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE  116 (263)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~  116 (263)
                      ++.+.++......+..       .|....++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++
T Consensus        37 ~~~~~A~~~~~~~l~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  109 (243)
T 2q7f_A           37 GDYEKAAEAFTKAIEE-------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKE  109 (243)
T ss_dssp             -----CCTTHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             hCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHH
Confidence            3444555555554443       677788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712          117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (263)
Q Consensus       117 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  196 (263)
                      |+..+++++...|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...
T Consensus       110 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  189 (243)
T 2q7f_A          110 AKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD  189 (243)
T ss_dssp             HHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712          197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV  247 (263)
Q Consensus       197 p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~  247 (263)
                      |.++.++..+|.++...|+   +++|..+|+++++++|+ +..++..+...
T Consensus       190 ~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~~~~l  236 (243)
T 2q7f_A          190 PGHADAFYNAGVTYAYKEN---REKALEMLDKAIDIQPD-HMLALHAKKLL  236 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTC---TTHHHHHHHHHHHHCTT-CHHHHHHHTC-
T ss_pred             cccHHHHHHHHHHHHHccC---HHHHHHHHHHHHccCcc-hHHHHHHHHHH
Confidence            9999999999999999999   99999999999999996 66666555433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.94  E-value=4.5e-25  Score=179.73  Aligned_cols=203  Identities=10%  Similarity=0.032  Sum_probs=158.8

Q ss_pred             CChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHH
Q 024712           37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE  116 (263)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~  116 (263)
                      ++.+.++......+..       .|....++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++
T Consensus        79 g~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  151 (365)
T 4eqf_A           79 GDLPVTILFMEAAILQ-------DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQD  151 (365)
T ss_dssp             TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHHHHHh-------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHH
Confidence            3455555555555443       567777888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhcCCCCHHHHHH----------HHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhcccHHH
Q 024712          117 AEKAYSSLLEDNPLDPVLHKR----------RVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQ  184 (263)
Q Consensus       117 A~~~~~~~~~~~p~~~~~~~~----------l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~  184 (263)
                      |+..+++++..+|.+...+..          +|.++...|++++|+..++++++.+|.  ++.++..+|.++...|++++
T Consensus       152 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~  231 (365)
T 4eqf_A          152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNR  231 (365)
T ss_dssp             HHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHH
Confidence            888888888877765544443          377777788888888888888888888  88889999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          185 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       185 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      |+.+|+++++.+|.++.++..+|.++...|+   +++|+..|+++++++|+ +..+++.++.++..
T Consensus       232 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~  293 (365)
T 4eqf_A          232 AIDAFNAALTVRPEDYSLWNRLGATLANGDR---SEEAVEAYTRALEIQPG-FIRSRYNLGISCIN  293 (365)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence            9999999999999999999999999999999   99999999999999886 67777777666555

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.94  E-value=6.8e-24  Score=169.76  Aligned_cols=224  Identities=11%  Similarity=-0.062  Sum_probs=184.0

Q ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHhcCc---------ccccccCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Q 024712           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDP---------KKRSALGPDVWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQK   92 (263)
Q Consensus        23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~   92 (263)
                      .|..++..+....+.+.......+.......         .......|....++..+|.++...| ++++|+..+++++.
T Consensus        40 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~  119 (330)
T 3hym_B           40 MCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATT  119 (330)
T ss_dssp             HHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4566666655555555443333222221110         0112337777888899999999999 89999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 024712           93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL  172 (263)
Q Consensus        93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  172 (263)
                      ..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++.+|.++.++..+
T Consensus       120 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  199 (330)
T 3hym_B          120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV  199 (330)
T ss_dssp             TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             HHHHHhcccHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHh
Q 024712          173 AEIYVSLQMYKQAAFCYEELILSQ---------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFG  243 (263)
Q Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~  243 (263)
                      |.++...|++++|+.++++++...         |..+.++..+|.++...|+   +++|+.+|+++++.+|+ +..+++.
T Consensus       200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~-~~~~~~~  275 (330)
T 3hym_B          200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK---YAEALDYHRQALVLIPQ-NASTYSA  275 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTT-CSHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhCcc-chHHHHH
Confidence            999999999999999999999876         6667889999999999999   99999999999999886 7777777


Q ss_pred             HHHHHhh
Q 024712          244 ICLVMFV  250 (263)
Q Consensus       244 l~~~~~~  250 (263)
                      ++.++..
T Consensus       276 la~~~~~  282 (330)
T 3hym_B          276 IGYIHSL  282 (330)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776655

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.93  E-value=9.1e-24  Score=159.94  Aligned_cols=185  Identities=13%  Similarity=0.059  Sum_probs=171.1

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      +|..+.++..+|..+...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~   83 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG   83 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            57788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc-CChhHHHHHHHHHHH--hcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC
Q 024712          140 AIAKAQ-GNFPTAIEWLNKYLE--TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV  216 (263)
Q Consensus       140 ~~~~~~-g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  216 (263)
                      .++... |++++|+..++++++  ..|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|+ 
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-  162 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ-  162 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC-
Confidence            999999 999999999999999  6677789999999999999999999999999999999999999999999999999 


Q ss_pred             CcHHHHHHHHHHhhccCC-CcchhHHHhHHHHH
Q 024712          217 DNILLAKKYYASTIDLTG-GKNTKALFGICLVM  248 (263)
Q Consensus       217 ~~~~~A~~~~~~al~~~~-~~~~~~~~~l~~~~  248 (263)
                        +++|...++++++.+| . ....++.+..++
T Consensus       163 --~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~  192 (225)
T 2vq2_A          163 --LGDADYYFKKYQSRVEVL-QADDLLLGWKIA  192 (225)
T ss_dssp             --HHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhCCCC-CHHHHHHHHHHH
Confidence              9999999999999988 6 555555444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.8e-24  Score=165.39  Aligned_cols=199  Identities=12%  Similarity=0.016  Sum_probs=173.9

Q ss_pred             cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-------HHHHHHHHHHH
Q 024712           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-------KRVGRLEGILL  108 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~~a~~~  108 (263)
                      .++.+.++......+..       . ....++..+|.++...|++++|+..++++++..|++       +.++..+|.++
T Consensus        18 ~~~~~~A~~~~~~a~~~-------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~   89 (258)
T 3uq3_A           18 ARQFDEAIEHYNKAWEL-------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY   89 (258)
T ss_dssp             TTCHHHHHHHHHHHHHH-------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHh-------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence            34566666666666544       2 446778889999999999999999999999988765       68889999999


Q ss_pred             HHcCcHHHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 024712          109 EAKGLWAEAEKAYSSLLE--------------------------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF  162 (263)
Q Consensus       109 ~~~~~~~~A~~~~~~~~~--------------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  162 (263)
                      ...|++++|+..+++++.                          .+|.++.++..+|.++...|++++|+..+++++..+
T Consensus        90 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  169 (258)
T 3uq3_A           90 HKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA  169 (258)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            999999999999999998                          666677889999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC------CCc
Q 024712          163 MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT------GGK  236 (263)
Q Consensus       163 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~------~~~  236 (263)
                      |.++.++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|+   +++|..+|+++++++      |. 
T Consensus       170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~p~-  245 (258)
T 3uq3_A          170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE---YASALETLDAARTKDAEVNNGSS-  245 (258)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred             cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhChhhcCCCc-
Confidence            99999999999999999999999999999999999999999999999999999   999999999999998      64 


Q ss_pred             chhHHHhHHH
Q 024712          237 NTKALFGICL  246 (263)
Q Consensus       237 ~~~~~~~l~~  246 (263)
                      +...+..+..
T Consensus       246 ~~~~~~~l~~  255 (258)
T 3uq3_A          246 AREIDQLYYK  255 (258)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            5555555443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.93  E-value=2.2e-23  Score=169.51  Aligned_cols=204  Identities=11%  Similarity=0.102  Sum_probs=166.2

Q ss_pred             cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (263)
                      .++.+.++......+..       .|....++..+|.++...|++++|+..++++++..|+++.++..+|.++...|+++
T Consensus        77 ~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~  149 (368)
T 1fch_A           77 EGDLPNAVLLFEAAVQQ-------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR  149 (368)
T ss_dssp             TTCHHHHHHHHHHHHHS-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence            34455555555555544       66777788888888888888888888888888888888888888888888888877


Q ss_pred             HHHHHHHHHHhcC-------------------------------------------------CC--CHHHHHHHHHHHHH
Q 024712          116 EAEKAYSSLLEDN-------------------------------------------------PL--DPVLHKRRVAIAKA  144 (263)
Q Consensus       116 ~A~~~~~~~~~~~-------------------------------------------------p~--~~~~~~~l~~~~~~  144 (263)
                      +|+..+++++...                                                 |.  ++.++..+|.++..
T Consensus       150 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~  229 (368)
T 1fch_A          150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL  229 (368)
T ss_dssp             HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence            7777777666544                                                 44  56778888999999


Q ss_pred             cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHH
Q 024712          145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK  224 (263)
Q Consensus       145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~  224 (263)
                      .|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|+   +++|+.
T Consensus       230 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~  306 (368)
T 1fch_A          230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA---HREAVE  306 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---HHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999   999999


Q ss_pred             HHHHhhccCCCcc-----------hhHHHhHHHHHhh
Q 024712          225 YYASTIDLTGGKN-----------TKALFGICLVMFV  250 (263)
Q Consensus       225 ~~~~al~~~~~~~-----------~~~~~~l~~~~~~  250 (263)
                      +|+++++++|+ .           ..++..++.++..
T Consensus       307 ~~~~al~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~  342 (368)
T 1fch_A          307 HFLEALNMQRK-SRGPRGEGGAMSENIWSTLRLALSM  342 (368)
T ss_dssp             HHHHHHHHHHT-C------CCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCC-CCCccccccchhhHHHHHHHHHHHH
Confidence            99999988875 3           5666666666554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.93  E-value=2.4e-24  Score=175.41  Aligned_cols=225  Identities=14%  Similarity=0.115  Sum_probs=183.6

Q ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHhcCcc---------cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 024712           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPK---------KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ   93 (263)
Q Consensus        23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   93 (263)
                      .|+.++..+....+........++........         ......|....++..+|.++...|++++|+..+++++..
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  162 (365)
T 4eqf_A           83 VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ  162 (365)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence            45666666666665555544444444332211         123347888999999999999999999999999999999


Q ss_pred             CCCcHHHHHHH----------HHHHHHcCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 024712           94 FPESKRVGRLE----------GILLEAKGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET  161 (263)
Q Consensus        94 ~p~~~~~~~~~----------a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  161 (263)
                      .|+++.++..+          |.++...|++++|+..+++++..+|.  ++.++..+|.++...|++++|+..++++++.
T Consensus       163 ~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  242 (365)
T 4eqf_A          163 NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV  242 (365)
T ss_dssp             CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99776655544          89999999999999999999999999  8999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCc-----
Q 024712          162 FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK-----  236 (263)
Q Consensus       162 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~-----  236 (263)
                      +|.++.+|..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+   +++|+.+|+++++++|+.     
T Consensus       243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~  319 (365)
T 4eqf_A          243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA---YREAVSNFLTALSLQRKSRNQQQ  319 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHCC-----
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCcccCCCcc
Confidence            999999999999999999999999999999999999999999999999999999   999999999999998751     


Q ss_pred             ------chhHHHhHHHHHhh
Q 024712          237 ------NTKALFGICLVMFV  250 (263)
Q Consensus       237 ------~~~~~~~l~~~~~~  250 (263)
                            ....+..+..++..
T Consensus       320 ~~~~~~~~~~~~~l~~~~~~  339 (365)
T 4eqf_A          320 VPHPAISGNIWAALRIALSL  339 (365)
T ss_dssp             -------CHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHHH
Confidence                  24555566665444

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.93  E-value=1.6e-23  Score=161.72  Aligned_cols=188  Identities=16%  Similarity=0.157  Sum_probs=163.4

Q ss_pred             cCcch-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712           59 LGPDV-WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR  137 (263)
Q Consensus        59 ~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  137 (263)
                      .+|.. ..++..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.+..++..
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  110 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN  110 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence            35554 77888889999999999999999999999999888889999999999999999999999999999988888899


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHH--hcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          138 RVAIAKAQGNFPTAIEWLNKYLE--TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      +|.++...|++++|+..+++++.  ..|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...|+
T Consensus       111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  190 (252)
T 2ho1_A          111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE  190 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Confidence            99999999999999999999988  7788888889999999999999999999999999999888889999999999999


Q ss_pred             CCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          216 VDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       216 ~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                         +++|...|+++++..|. ....++.++.++..
T Consensus       191 ---~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~  221 (252)
T 2ho1_A          191 ---YVPARQYYDLFAQGGGQ-NARSLLLGIRLAKV  221 (252)
T ss_dssp             ---HHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence               99999999999988885 66666666655544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=6.9e-24  Score=163.92  Aligned_cols=185  Identities=14%  Similarity=0.020  Sum_probs=173.0

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC-------HH
Q 024712           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-------PV  133 (263)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~  133 (263)
                      +..+..+..+|..++..|++++|+.+++++++.. .++.++..+|.++...|++++|+..+++++..+|.+       +.
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            3567789999999999999999999999999999 899999999999999999999999999999998876       68


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHH--------------------------hcCCCHHHHHHHHHHHHhcccHHHHHH
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLE--------------------------TFMADHDAWRELAEIYVSLQMYKQAAF  187 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~--------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~  187 (263)
                      ++..+|.++...|++++|+..+++++.                          .+|.++.++..+|.++...|++++|+.
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  160 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK  160 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999999999999999999999999                          667778899999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      +|++++..+|.++.++..+|.++...|+   +++|+..|+++++.+|+ +..+++.++.++..
T Consensus       161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          161 AYTEMIKRAPEDARGYSNRAAALAKLMS---FPEAIADCNKAIEKDPN-FVRAYIRKATAQIA  219 (258)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHH
Confidence            9999999999999999999999999999   99999999999999996 77778777777655

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.93  E-value=4.9e-23  Score=159.03  Aligned_cols=194  Identities=12%  Similarity=-0.008  Sum_probs=179.1

Q ss_pred             cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (263)
                      .++.+.++......+..       .|....++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus        50 ~~~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~  122 (252)
T 2ho1_A           50 RGNTEQAKVPLRKALEI-------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYE  122 (252)
T ss_dssp             TTCTGGGHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             cCChHHHHHHHHHHHhc-------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHH
Confidence            44566666666665544       56778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 024712          116 EAEKAYSSLLE--DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI  193 (263)
Q Consensus       116 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  193 (263)
                      +|+.++++++.  ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++
T Consensus       123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  202 (252)
T 2ho1_A          123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFA  202 (252)
T ss_dssp             HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999  7888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhH
Q 024712          194 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  240 (263)
Q Consensus       194 ~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~  240 (263)
                      ...|.+..++..++.++...|+   +++|..+++++++..|+ +...
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~  245 (252)
T 2ho1_A          203 QGGGQNARSLLLGIRLAKVFED---RDTAASYGLQLKRLYPG-SLEY  245 (252)
T ss_dssp             TTSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-SHHH
T ss_pred             HhCcCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHCCC-CHHH
Confidence            9999999999999999999999   99999999999999996 4443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.92  E-value=8.5e-24  Score=164.59  Aligned_cols=176  Identities=14%  Similarity=0.079  Sum_probs=162.2

Q ss_pred             cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC--
Q 024712           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD--  131 (263)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--  131 (263)
                      ....|..+..+..+|..++..|++++|+..|++++..+|++   +.+++.+|.++...|++++|+..|++++...|++  
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            34577888999999999999999999999999999999988   8899999999999999999999999999998865  


Q ss_pred             -HHHHHHHHHHHHH--------cCChhHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHhcccHHHH
Q 024712          132 -PVLHKRRVAIAKA--------QGNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMYKQA  185 (263)
Q Consensus       132 -~~~~~~l~~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~-----------------~~la~~~~~~g~~~~A  185 (263)
                       +.+++.+|.++..        .|++++|+..|++++..+|+++.++                 +.+|.+|...|++++|
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  167 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA  167 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence             5689999999999        9999999999999999999987665                 8889999999999999


Q ss_pred             HHHHHHHHhhCCCC---HHHHHHHHHHHHhc----------CCCCcHHHHHHHHHHhhccCCC
Q 024712          186 AFCYEELILSQPTV---PLYHLAYADVLYTL----------GGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       186 ~~~~~~al~~~p~~---~~~~~~la~~~~~~----------g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +..|+++++..|++   +.++..+|.++..+          |+   +++|+..|+++++..|+
T Consensus       168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~---~~~A~~~~~~~~~~~p~  227 (261)
T 3qky_A          168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER---YRRAVELYERLLQIFPD  227 (261)
T ss_dssp             HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH---HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch---HHHHHHHHHHHHHHCCC
Confidence            99999999999984   56899999999988          77   99999999999999997

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.92  E-value=3.9e-22  Score=161.12  Aligned_cols=186  Identities=10%  Similarity=-0.089  Sum_probs=170.5

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH---
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK---  136 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~---  136 (263)
                      .|..+.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|++..++.   
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  229 (359)
T 3ieg_A          150 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK  229 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            67788899999999999999999999999999999999999999999999999999999999999999999987654   


Q ss_pred             ---------HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH----HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH
Q 024712          137 ---------RRVAIAKAQGNFPTAIEWLNKYLETFMADHDA----WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (263)
Q Consensus       137 ---------~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  203 (263)
                               .+|.++...|++++|+..+++++...|.++..    +..+|.++...|++++|+.+++++++.+|+++.++
T Consensus       230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  309 (359)
T 3ieg_A          230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL  309 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHH
Confidence                     34888999999999999999999999998744    56799999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          204 LAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       204 ~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                      ..+|.++...|+   +++|...|+++++++|+ +..++..+..+..
T Consensus       310 ~~~~~~~~~~g~---~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~  351 (359)
T 3ieg_A          310 KDRAEAYLIEEM---YDEAIQDYEAAQEHNEN-DQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHHHHHTTC---HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence            999999999999   99999999999999996 7777766665543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.92  E-value=9e-24  Score=162.03  Aligned_cols=184  Identities=14%  Similarity=0.026  Sum_probs=157.8

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  142 (263)
                      ....+..+|..+...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  101 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY  101 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            55667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHH
Q 024712          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA  222 (263)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A  222 (263)
                      ...|++++|+..++++++.+|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|+   +++|
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A  178 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM---LDEA  178 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC---HHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          223 KKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       223 ~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      +..|+++++.+|+ +...++.++.++..
T Consensus       179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~  205 (243)
T 2q7f_A          179 LSQFAAVTEQDPG-HADAFYNAGVTYAY  205 (243)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence            9999999999996 77777777777655

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.92  E-value=1.5e-23  Score=153.80  Aligned_cols=171  Identities=15%  Similarity=0.039  Sum_probs=165.8

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  141 (263)
                      .....+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   85 (186)
T 3as5_A            6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH
Q 024712          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  221 (263)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~  221 (263)
                      +...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|+   +++
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~  162 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR---HEE  162 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---HHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999   999


Q ss_pred             HHHHHHHhhccCCC
Q 024712          222 AKKYYASTIDLTGG  235 (263)
Q Consensus       222 A~~~~~~al~~~~~  235 (263)
                      |..+++++++.+|+
T Consensus       163 A~~~~~~~~~~~~~  176 (186)
T 3as5_A          163 ALPHFKKANELDEG  176 (186)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCC
Confidence            99999999999886

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.92  E-value=7.6e-24  Score=159.46  Aligned_cols=168  Identities=13%  Similarity=-0.023  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHH----------------HHHHHHHcCcHHHHHHHHHHHHhc
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRL----------------EGILLEAKGLWAEAEKAYSSLLED  127 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~~~~~  127 (263)
                      ...+...|..++..|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4566778999999999999999999999999999999999                999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc--HHHHHHHHHHHHhhCCCCHHHHHH
Q 024712          128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM--YKQAAFCYEELILSQPTVPLYHLA  205 (263)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~  205 (263)
                      +|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|+..|+  ...+...+.+++...|. ..+++.
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~  162 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYR  162 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHH
Confidence            999999999999999999999999999999999999999999999999987764  45677788877654332 346788


Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          206 YADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       206 la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +|.++...|+   +++|+.+|+++++++|+
T Consensus       163 ~g~~~~~~~~---~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          163 DGLSKLFTTR---YEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHHT---HHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHccC---HHHHHHHHHHHHHhCCC
Confidence            8999999999   99999999999999996

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.92  E-value=1.3e-22  Score=163.91  Aligned_cols=194  Identities=16%  Similarity=0.145  Sum_probs=179.9

Q ss_pred             cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (263)
                      .++.+.++.....++..       .|..+.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|+++
T Consensus        16 ~g~~~~A~~~~~~~l~~-------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   88 (359)
T 3ieg_A           16 AGQLADALSQFHAAVDG-------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD   88 (359)
T ss_dssp             TTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             cCCHHHHHHHHHHHHhh-------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChH
Confidence            45667777777766654       67778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712          116 EAEKAYSSLLEDNP---LDPVLHKRR------------VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (263)
Q Consensus       116 ~A~~~~~~~~~~~p---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  180 (263)
                      +|+..+++++..+|   +++.++..+            |.++...|++++|+..++++++.+|.++.++..+|.++...|
T Consensus        89 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (359)
T 3ieg_A           89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG  168 (359)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCC
Confidence            99999999999999   888887777            789999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhH
Q 024712          181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  240 (263)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~  240 (263)
                      ++++|+..+++++...|.++.++..+|.++...|+   +++|+..|+++++.+|+ ....
T Consensus       169 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~-~~~~  224 (359)
T 3ieg_A          169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD---HELSLSEVRECLKLDQD-HKRC  224 (359)
T ss_dssp             CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-CHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCcc-chHH
Confidence            99999999999999999999999999999999999   99999999999999997 4443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.92  E-value=2.2e-23  Score=162.66  Aligned_cols=181  Identities=10%  Similarity=0.017  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH----HHHHHHHH
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----VLHKRRVA  140 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~  140 (263)
                      .++...|..++..|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++. .|.++    .++..+|.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence            45667899999999999999999999999999999999999999999999999999999999 44443    45899999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  220 (263)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~  220 (263)
                      ++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|...+..++   ++
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~---~~  159 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE---YV  159 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC---HH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH---HH
Confidence            999999999999999999999999999999999999999999999999999999999999999999955555668   99


Q ss_pred             HHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          221 LAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       221 ~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      +|+..|+++++.+|+ +..+++.++.+...
T Consensus       160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~  188 (272)
T 3u4t_A          160 KADSSFVKVLELKPN-IYIGYLWRARANAA  188 (272)
T ss_dssp             HHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence            999999999999996 66777666666544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.92  E-value=2.8e-22  Score=151.70  Aligned_cols=194  Identities=15%  Similarity=0.058  Sum_probs=177.4

Q ss_pred             cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CcH
Q 024712           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-GLW  114 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-~~~  114 (263)
                      .++.+.++......+..       .|....++..+|.++...|++++|+..+++++...|.++.++..+|.++... |++
T Consensus        21 ~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~   93 (225)
T 2vq2_A           21 GQDYRQATASIEDALKS-------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP   93 (225)
T ss_dssp             TTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH
T ss_pred             HhhHHHHHHHHHHHHHh-------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH
Confidence            45566777666666544       5667888999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712          115 AEAEKAYSSLLE--DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (263)
Q Consensus       115 ~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  192 (263)
                      ++|+..+++++.  ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.+++++
T Consensus        94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  173 (225)
T 2vq2_A           94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY  173 (225)
T ss_dssp             HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999  667778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCC-CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhH
Q 024712          193 ILSQP-TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  240 (263)
Q Consensus       193 l~~~p-~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~  240 (263)
                      +...| .++..+..++.++...|+   .++|..+++.+.+.+|+ +..+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~  218 (225)
T 2vq2_A          174 QSRVEVLQADDLLLGWKIAKALGN---AQAAYEYEAQLQANFPY-SEEL  218 (225)
T ss_dssp             HHHHCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHH
T ss_pred             HHhCCCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCCC-CHHH
Confidence            99999 999999999999999999   99999999999989886 4443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.92  E-value=8.3e-25  Score=156.17  Aligned_cols=146  Identities=14%  Similarity=0.032  Sum_probs=127.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP  149 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  149 (263)
                      +|.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            56677778889999999999988888888888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC-YEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       150 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      +|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++...+.++...|+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999999998877665 588999999999998888888888775

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=2.6e-22  Score=167.55  Aligned_cols=185  Identities=10%  Similarity=-0.077  Sum_probs=173.2

Q ss_pred             cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (263)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  138 (263)
                      ..|....++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|++...+..+
T Consensus       172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~  251 (450)
T 2y4t_A          172 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY  251 (450)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            36778889999999999999999999999999999999999999999999999999999999999999999999887666


Q ss_pred             ------------HHHHHHcCChhHHHHHHHHHHHhcCCCHH----HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH
Q 024712          139 ------------VAIAKAQGNFPTAIEWLNKYLETFMADHD----AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  202 (263)
Q Consensus       139 ------------~~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  202 (263)
                                  |.++...|++++|+..|++++...|.++.    .+..+|.++...|++++|+..+++++..+|+++.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~  331 (450)
T 2y4t_A          252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNA  331 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence                        99999999999999999999999999854    78899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712          203 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV  247 (263)
Q Consensus       203 ~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~  247 (263)
                      +..+|.++...|+   +++|+..|+++++++|+ +..++..+..+
T Consensus       332 ~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~  372 (450)
T 2y4t_A          332 LKDRAEAYLIEEM---YDEAIQDYETAQEHNEN-DQQIREGLEKA  372 (450)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHTTSSS-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC---HHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence            9999999999999   99999999999999997 67776666644

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.92  E-value=8.3e-23  Score=163.24  Aligned_cols=204  Identities=12%  Similarity=0.060  Sum_probs=154.9

Q ss_pred             cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (263)
                      .++.++++.....++..       .|....++..+|.++...|++++|+..++++++..|+++.++..+|.++...|+++
T Consensus        34 ~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~  106 (327)
T 3cv0_A           34 LANLAEAALAFEAVCQA-------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN  106 (327)
T ss_dssp             TTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hccHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHH
Confidence            34566666666665544       56677788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHH--------------HH-HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712          116 EAEKAYSSLLEDNPLDPVLHKRR--------------VA-IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (263)
Q Consensus       116 ~A~~~~~~~~~~~p~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  180 (263)
                      +|+..+++++..+|.+...+..+              +. ++...|++++|+..++++++..|.++.++..+|.++...|
T Consensus       107 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  186 (327)
T 3cv0_A          107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN  186 (327)
T ss_dssp             HHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Confidence            88888888888877776665555              44 5667777788888888888888888888888888888888


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      ++++|+.++++++..+|+++.++..+|.++...|+   +++|+..|+++++.+|+ +..+++.++.++..
T Consensus       187 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          187 NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR---PQEALDAYNRALDINPG-YVRVMYNMAVSYSN  252 (327)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888   88888888888887775 66666666655544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.91  E-value=5.1e-22  Score=157.03  Aligned_cols=185  Identities=11%  Similarity=0.016  Sum_probs=132.5

Q ss_pred             ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHH
Q 024712           38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA  117 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A  117 (263)
                      +.+.++.....++..     ...|+.+.++..+|.++...|++++|+..+++     |+++.++..+|.++...|++++|
T Consensus        80 ~~~~A~~~l~~ll~~-----~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A  149 (291)
T 3mkr_A           80 RRDAIVAELDREMSR-----SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLA  149 (291)
T ss_dssp             THHHHHHHHHHHHHS-----CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHhc-----ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHH
Confidence            345555555554433     12466677777777777777888888877776     77777777778888888888888


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHH--HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712          118 EKAYSSLLEDNPLDPVLHKRRV--AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       118 ~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  195 (263)
                      +..+++++..+|++.......+  .++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++..
T Consensus       150 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  229 (291)
T 3mkr_A          150 RKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK  229 (291)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            8888888777777654333222  33334577778888888888778877777777888888888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCcHHH-HHHHHHHhhccCCC
Q 024712          196 QPTVPLYHLAYADVLYTLGGVDNILL-AKKYYASTIDLTGG  235 (263)
Q Consensus       196 ~p~~~~~~~~la~~~~~~g~~~~~~~-A~~~~~~al~~~~~  235 (263)
                      +|+++.++.++|.++...|+   ..+ +..+++++++++|+
T Consensus       230 ~p~~~~~l~~l~~~~~~~g~---~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          230 DSGHPETLINLVVLSQHLGK---PPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             CTTCHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHCTT
T ss_pred             CCCCHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCCC
Confidence            88888777788877777777   654 45777777777775

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.91  E-value=2.7e-23  Score=182.09  Aligned_cols=154  Identities=18%  Similarity=0.195  Sum_probs=147.8

Q ss_pred             hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 024712           93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL  172 (263)
Q Consensus        93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  172 (263)
                      ..|+++.++.++|.++...|++++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.+++++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      |.++..+|++++|+.+|+++++++|+++.++.++|.++...|+   +++|+..|+++++++|+ +..++..++.++..
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~  157 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN---IPEAIASYRTALKLKPD-FPDAYCNLAHCLQI  157 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHh
Confidence            9999999999999999999999999999999999999999999   99999999999999997 88888888877665

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=1e-22  Score=170.08  Aligned_cols=173  Identities=18%  Similarity=0.173  Sum_probs=121.5

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHK  136 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~  136 (263)
                      .|....++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|++++..+|.+.   .++.
T Consensus        56 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  135 (450)
T 2y4t_A           56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQS  135 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence            5556666667777777777777777777777777777777777777777777777777777777777777666   5544


Q ss_pred             HH------------HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH
Q 024712          137 RR------------VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  204 (263)
Q Consensus       137 ~l------------~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  204 (263)
                      .+            |.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.+|++++..+|.++.++.
T Consensus       136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  215 (450)
T 2y4t_A          136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFY  215 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            44            444666777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          205 AYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       205 ~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .+|.++...|+   +++|+..|++++..+|+
T Consensus       216 ~l~~~~~~~g~---~~~A~~~~~~~~~~~p~  243 (450)
T 2y4t_A          216 KISTLYYQLGD---HELSLSEVRECLKLDQD  243 (450)
T ss_dssp             HHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Confidence            77777777777   77777777777777664

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.91  E-value=2.3e-22  Score=163.54  Aligned_cols=183  Identities=15%  Similarity=0.059  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  143 (263)
                      ...+..+|..+...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            55678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHHhc-------------------------------------------------CC--CHHHHHHH
Q 024712          144 AQGNFPTAIEWLNKYLETF-------------------------------------------------MA--DHDAWREL  172 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~-------------------------------------------------p~--~~~~~~~l  172 (263)
                      ..|++++|+..+++++...                                                 |.  ++.++..+
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l  223 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  223 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence            9999888888877766554                                                 44  67888899


Q ss_pred             HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      |.++...|++++|+.+|++++..+|.++.++..+|.++...|+   +++|+..|+++++++|+ ...+++.++.++..
T Consensus       224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~  297 (368)
T 1fch_A          224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ---SEEAVAAYRRALELQPG-YIRSRYNLGISCIN  297 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999   99999999999999986 77777777777655

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.91  E-value=1.4e-22  Score=161.96  Aligned_cols=225  Identities=16%  Similarity=0.148  Sum_probs=185.6

Q ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHhcCcc---------cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 024712           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPK---------KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ   93 (263)
Q Consensus        23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   93 (263)
                      .|..++..+....+........++........         ......|....++..+|.++...|++++|+..+++++..
T Consensus        39 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  118 (327)
T 3cv0_A           39 EAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS  118 (327)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45566655555555544444444333322211         112337788889999999999999999999999999999


Q ss_pred             CCCcHHHHHHH--------------HH-HHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 024712           94 FPESKRVGRLE--------------GI-LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY  158 (263)
Q Consensus        94 ~p~~~~~~~~~--------------a~-~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  158 (263)
                      .|.+...+..+              +. ++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  198 (327)
T 3cv0_A          119 QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA  198 (327)
T ss_dssp             STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            99888777666              66 6888899999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCc--
Q 024712          159 LETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK--  236 (263)
Q Consensus       159 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~--  236 (263)
                      ++.+|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|+   +++|+..|++++...|..  
T Consensus       199 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~  275 (327)
T 3cv0_A          199 VELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ---YDLAAKQLVRAIYMQVGGTT  275 (327)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTSCC
T ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCcccc
Confidence            999999999999999999999999999999999999999999999999999999999   999999999999998852  


Q ss_pred             ---------chhHHHhHHHHHhh
Q 024712          237 ---------NTKALFGICLVMFV  250 (263)
Q Consensus       237 ---------~~~~~~~l~~~~~~  250 (263)
                               ...++..++.++..
T Consensus       276 ~~~~~~~~~~~~~~~~l~~~~~~  298 (327)
T 3cv0_A          276 PTGEASREATRSMWDFFRMLLNV  298 (327)
T ss_dssp             -----CCTHHHHHHHHHHHHHHH
T ss_pred             ccccchhhcCHHHHHHHHHHHHh
Confidence                     45666666666554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.91  E-value=5.5e-22  Score=171.35  Aligned_cols=183  Identities=17%  Similarity=0.063  Sum_probs=111.2

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      .|....++..++..+...|++++|+..|++++...|+++.++..++.++...|++++|+..|+++++..|.++.++..++
T Consensus       403 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  482 (597)
T 2xpi_A          403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG  482 (597)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            44455555566666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHcCChhHHHHHHHHHHHh------cCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712          140 AIAKAQGNFPTAIEWLNKYLET------FMAD-HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (263)
                      .++...|++++|+..|+++++.      +|.+ ..+|..+|.++...|++++|+..++++++.+|+++.++..+|.+|..
T Consensus       483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  562 (597)
T 2xpi_A          483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH  562 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            6666666666666666666655      3332 45566666666666666666666666666666666666666666666


Q ss_pred             cCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHH
Q 024712          213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICL  246 (263)
Q Consensus       213 ~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~  246 (263)
                      .|+   +++|...|+++++++|+ +..++..+..
T Consensus       563 ~g~---~~~A~~~~~~~l~~~p~-~~~~~~~l~~  592 (597)
T 2xpi_A          563 KKI---PGLAITHLHESLAISPN-EIMASDLLKR  592 (597)
T ss_dssp             TTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hCC---HHHHHHHHHHHHhcCCC-ChHHHHHHHH
Confidence            666   66666666666666664 4444444443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.91  E-value=1.6e-22  Score=149.01  Aligned_cols=152  Identities=19%  Similarity=0.091  Sum_probs=145.1

Q ss_pred             CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 024712           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  174 (263)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~  174 (263)
                      ++++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.
T Consensus         2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
T 3vtx_A            2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS   81 (184)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      ++...++++.|+..+.+++..+|.++.++..+|.++...|+   +++|+..|+++++++|. +..+++.++.++..
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~  153 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE---HDKAIEAYEKTISIKPG-FIRAYQSIGLAYEG  153 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC---chhHHHHHHHHHHhcch-hhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999   99999999999999996 88888888887766

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.91  E-value=1.3e-21  Score=169.04  Aligned_cols=187  Identities=14%  Similarity=0.009  Sum_probs=173.1

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      .|+...++..++..+...|++++|+.+|+++++..|.+..++..++.++...|++++|+..|++++...|.+..++..++
T Consensus       369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  448 (597)
T 2xpi_A          369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG  448 (597)
T ss_dssp             CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            67778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHh
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS------QPTV-PLYHLAYADVLYT  212 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~  212 (263)
                      .++...|++++|+..|+++++..|.++.+|..+|.++...|++++|+.+|+++++.      +|++ ..++..+|.++..
T Consensus       449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~  528 (597)
T 2xpi_A          449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK  528 (597)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988      5654 6789999999999


Q ss_pred             cCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       213 ~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      .|+   +++|+..|+++++.+|+ +..++..++.++..
T Consensus       529 ~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~  562 (597)
T 2xpi_A          529 LKM---YDAAIDALNQGLLLSTN-DANVHTAIALVYLH  562 (597)
T ss_dssp             TTC---HHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHH
T ss_pred             hcC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence            999   99999999999999996 77777777776655

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.91  E-value=1.6e-23  Score=183.82  Aligned_cols=183  Identities=15%  Similarity=0.050  Sum_probs=170.3

Q ss_pred             cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC
Q 024712           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQ--------KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL  130 (263)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~  130 (263)
                      .+|+.+..+...+   ...|++++|+..+++++        +.+|++..++..+|.++...|++++|+..|+++++.+|+
T Consensus       389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~  465 (681)
T 2pzi_A          389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW  465 (681)
T ss_dssp             CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence            4555555555555   77899999999999999        889999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024712          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (263)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (263)
                      +..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++++|+++.++.++|.++
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~  544 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR  544 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             HhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          211 YTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       211 ~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                      ...|+   +++|+..|+++++++|+ +..+++.++.+..
T Consensus       545 ~~~g~---~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~  579 (681)
T 2pzi_A          545 SAEGD---RVGAVRTLDEVPPTSRH-FTTARLTSAVTLL  579 (681)
T ss_dssp             HHTTC---HHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC
T ss_pred             HHcCC---HHHHHHHHHhhcccCcc-cHHHHHHHHHHHH
Confidence            99999   99999999999999996 7888887777753

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.91  E-value=1.4e-22  Score=170.87  Aligned_cols=183  Identities=10%  Similarity=-0.050  Sum_probs=169.2

Q ss_pred             cCCh-hHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---
Q 024712           36 VRRP-DKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK---  111 (263)
Q Consensus        36 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---  111 (263)
                      .++. ++++......+..       +|+...++..+|.++...|++++|+..|+++++..|+ +.++..+|.++...   
T Consensus       115 ~g~~~~~A~~~~~~al~~-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~  186 (474)
T 4abn_A          115 TPDYSPEAEVLLSKAVKL-------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTD  186 (474)
T ss_dssp             SSSCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCS
T ss_pred             ccccHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccC
Confidence            3444 5565555555443       7888999999999999999999999999999999999 79999999999999   


Q ss_pred             ------CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CChhHHHHHHHHHHHhcC---CCHHHHHHHHH
Q 024712          112 ------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ--------GNFPTAIEWLNKYLETFM---ADHDAWRELAE  174 (263)
Q Consensus       112 ------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~l~~~p---~~~~~~~~la~  174 (263)
                            |++++|+..|++++..+|++..++..+|.++...        |++++|+..|+++++++|   .++.+|+.+|.
T Consensus       187 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~  266 (474)
T 4abn_A          187 SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRAT  266 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHH
T ss_pred             ChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence                  9999999999999999999999999999999999        999999999999999999   99999999999


Q ss_pred             HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712          175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (263)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a  229 (263)
                      ++...|++++|+..|+++++++|+++.++..++.++...|+   +++|+..+.+.
T Consensus       267 ~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~---~~eAi~~~~~~  318 (474)
T 4abn_A          267 LHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR---LTSLLESKGKT  318 (474)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH---HHHHHHHTTTC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHHHhccc
Confidence            99999999999999999999999999999999999999999   99999876554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.91  E-value=5.6e-22  Score=156.78  Aligned_cols=182  Identities=9%  Similarity=-0.053  Sum_probs=163.6

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ--FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR  137 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  137 (263)
                      +|..+.++..++..+...++.++|+..+++++..  +|+++.+++.+|.++...|++++|+..+++     |.++.++..
T Consensus        61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~  135 (291)
T 3mkr_A           61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAM  135 (291)
T ss_dssp             SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHH
T ss_pred             CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHH
Confidence            4556778888999999999999999999999876  599999999999999999999999999988     899999999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH--HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA--EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      +|.++..+|++++|+..++++++.+|++.......+  .++...|++++|+.+|++++...|+++.++..+|.++...|+
T Consensus       136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  215 (291)
T 3mkr_A          136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR  215 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999875544433  444456999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          216 VDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       216 ~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                         +++|...|+++++++|+ ++.+++.++.+...
T Consensus       216 ---~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~  246 (291)
T 3mkr_A          216 ---WEAAEGVLQEALDKDSG-HPETLINLVVLSQH  246 (291)
T ss_dssp             ---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence               99999999999999997 88888777766554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.91  E-value=9.9e-22  Score=153.29  Aligned_cols=202  Identities=13%  Similarity=-0.043  Sum_probs=171.1

Q ss_pred             CChhHHHHHHHHHhcCcccccccCcc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712           37 RRPDKVLRHGLSILNDPKKRSALGPD-VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (263)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (263)
                      ++.+.++......+..+     .++. ...++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|+++
T Consensus        51 ~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  125 (272)
T 3u4t_A           51 AKYDLAQKDIETYFSKV-----NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP  125 (272)
T ss_dssp             TCHHHHHHHHHHHHTTS-----CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHHHHHhcc-----CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHH
Confidence            34455555555555431     1222 36678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc---HHHHHHHHHHH
Q 024712          116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM---YKQAAFCYEEL  192 (263)
Q Consensus       116 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a  192 (263)
                      +|+..+++++..+|.++.++..+|...+..+++++|+..++++++.+|++..++..+|.++...|+   +++|+..|+++
T Consensus       126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  205 (272)
T 3u4t_A          126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL  205 (272)
T ss_dssp             HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence            999999999999999999999999555566799999999999999999999999999999999998   88999999999


Q ss_pred             HhhC---CCC-----HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712          193 ILSQ---PTV-----PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV  247 (263)
Q Consensus       193 l~~~---p~~-----~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~  247 (263)
                      ++..   |+.     ..++..+|.++...|+   +++|+.+|+++++++|+ +..++-++...
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~-~~~a~~~l~~~  264 (272)
T 3u4t_A          206 IEVCAPGGAKYKDELIEANEYIAYYYTINRD---KVKADAAWKNILALDPT-NKKAIDGLKMK  264 (272)
T ss_dssp             HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHC--
T ss_pred             HHHHhcccccchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCcc-HHHHHHHhhhh
Confidence            9876   442     2578889999999999   99999999999999996 77666655444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.90  E-value=3.8e-21  Score=150.04  Aligned_cols=191  Identities=16%  Similarity=0.035  Sum_probs=165.2

Q ss_pred             ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHH
Q 024712           38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA  117 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A  117 (263)
                      +.+.++.....++...   ...+|..+.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|
T Consensus        20 ~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           20 QQEVILARMEQILASR---ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             HHHHHHHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHhcc---cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            3455666666665441   1124567889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712          118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  197 (263)
                      +..+++++..+|.++.++..+|.++...|++++|+..++++++.+|.+......++.+ ...|++++|+..+.+++...|
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~  175 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSD  175 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999998766655544 666889999888888877665


Q ss_pred             CC-------------------------------------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          198 TV-------------------------------------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       198 ~~-------------------------------------~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .+                                     +.++..+|.++...|+   +++|+.+|+++++.+|+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~  247 (275)
T 1xnf_A          176 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALFKLAVANNVH  247 (275)
T ss_dssp             CCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCT
T ss_pred             cchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCch
Confidence            43                                     4678889999999999   99999999999999985

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.90  E-value=5e-22  Score=151.30  Aligned_cols=169  Identities=12%  Similarity=0.001  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH---HHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHKR  137 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~  137 (263)
                      +..+..+|..++..|++++|+..|++++..+|.++   .+++.+|.++...|++++|+..|++++..+|+++.   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            56778899999999999999999999999999764   68999999999999999999999999999999864   7888


Q ss_pred             HHHHHHH------------------cCChhHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHhcccH
Q 024712          138 RVAIAKA------------------QGNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMY  182 (263)
Q Consensus       138 l~~~~~~------------------~g~~~~A~~~~~~~l~~~p~~~~~~-----------------~~la~~~~~~g~~  182 (263)
                      +|.++..                  .|++++|+..|+++++.+|+++.++                 ..+|.+++..|++
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~  163 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW  163 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            9988876                  5789999999999999999997554                 5789999999999


Q ss_pred             HHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          183 KQAAFCYEELILSQPTVP---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       183 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ++|+..|+++++..|+++   .++..+|.++..+|+   +++|+..++++....|+
T Consensus       164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~---~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM---NAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhhCCC
Confidence            999999999999999986   679999999999999   99999999999888876

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.8e-21  Score=164.94  Aligned_cols=218  Identities=16%  Similarity=0.084  Sum_probs=186.0

Q ss_pred             ccHHHHHHHHHHhccCChhHHHHHHHHHhcCcc---------cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 024712           22 GGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPK---------KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK   92 (263)
Q Consensus        22 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   92 (263)
                      ..|+.++.......+. ......++........         ......|....++..+|.++...|++++|+..+++++.
T Consensus       254 ~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  332 (514)
T 2gw1_A          254 LGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE  332 (514)
T ss_dssp             HHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3566666666666555 4444444444433211         12234677788899999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH-----
Q 024712           93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD-----  167 (263)
Q Consensus        93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----  167 (263)
                      ..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.     
T Consensus       333 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  412 (514)
T 2gw1_A          333 LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI  412 (514)
T ss_dssp             TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCS
T ss_pred             hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998855     


Q ss_pred             -HHHHHHHHHHh---cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHh
Q 024712          168 -AWRELAEIYVS---LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFG  243 (263)
Q Consensus       168 -~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~  243 (263)
                       ++..+|.++..   .|++++|+..+++++..+|+++.++..+|.++...|+   +++|...|+++++++|+ +...+..
T Consensus       413 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~-~~~~~~~  488 (514)
T 2gw1_A          413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED---IDEAITLFEESADLART-MEEKLQA  488 (514)
T ss_dssp             HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSS-HHHHHHH
T ss_pred             HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhccc-cHHHHHH
Confidence             89999999999   9999999999999999999999999999999999999   99999999999999996 5555544


Q ss_pred             H
Q 024712          244 I  244 (263)
Q Consensus       244 l  244 (263)
                      +
T Consensus       489 ~  489 (514)
T 2gw1_A          489 I  489 (514)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.89  E-value=1.9e-22  Score=147.69  Aligned_cols=167  Identities=12%  Similarity=0.026  Sum_probs=148.6

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (263)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  140 (263)
                      |.....+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++.
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~   81 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK   81 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence            334455777899999999999999999999999999999999999999999999999999999999999 8876666565


Q ss_pred             HHH-HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCCC
Q 024712          141 IAK-AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVD  217 (263)
Q Consensus       141 ~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~  217 (263)
                      +.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.  +.++..+|.++...|+  
T Consensus        82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~--  159 (176)
T 2r5s_A           82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ--  159 (176)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS--
T ss_pred             HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC--
Confidence            433 33455668999999999999999999999999999999999999999999999976  6699999999999999  


Q ss_pred             cHHHHHHHHHHhhc
Q 024712          218 NILLAKKYYASTID  231 (263)
Q Consensus       218 ~~~~A~~~~~~al~  231 (263)
                       .++|...|++++.
T Consensus       160 -~~~A~~~y~~al~  172 (176)
T 2r5s_A          160 -GNAIASKYRRQLY  172 (176)
T ss_dssp             -SCHHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHH
Confidence             9999999999874

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.89  E-value=3.7e-23  Score=147.56  Aligned_cols=136  Identities=15%  Similarity=0.087  Sum_probs=123.6

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccH
Q 024712          103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY  182 (263)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  182 (263)
                      .+|.++...|++++|+..+++++..+|+++..++.+|.+|+..|++++|+..|+++++++|+++.+|..+|.++...|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            36888888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHH-HHHhhccCCCcchhHHH
Q 024712          183 KQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKY-YASTIDLTGGKNTKALF  242 (263)
Q Consensus       183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~-~~~al~~~~~~~~~~~~  242 (263)
                      ++|+.+|+++++++|+++.++..+|.++...|+   +++|... ++++++++|+ ++.++.
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~aa~~~~~~al~l~P~-~~~~~~  138 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDV---TDGRAKYWVERAAKLFPG-SPAVYK  138 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS---SSSHHHHHHHHHHHHSTT-CHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhCcC-CHHHHH
Confidence            999999999999999999999999999999999   8877665 5899999997 655544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.89  E-value=3.6e-22  Score=138.06  Aligned_cols=117  Identities=16%  Similarity=0.187  Sum_probs=77.3

Q ss_pred             hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 024712           93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL  172 (263)
Q Consensus        93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  172 (263)
                      ++|+.+..+..+|..++..|+|++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++++|+++.+|+.+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            45556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712          173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (263)
Q Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (263)
                      |.++..+|++++|+..|+++++++|+++.++..++.+
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            6666666666666666666666666666666666554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.89  E-value=2.4e-21  Score=147.56  Aligned_cols=152  Identities=18%  Similarity=0.186  Sum_probs=143.0

Q ss_pred             CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP-LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA  173 (263)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la  173 (263)
                      +.++..++.+|.++...|++++|+..|++++..+| .+..++..+|.++...|++++|+..++++++.+|.++.++..+|
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            45678999999999999999999999999999999 88999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCc--chhHHHhH
Q 024712          174 EIYVSLQMYKQAAFCYEELILSQPTVP-------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK--NTKALFGI  244 (263)
Q Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~--~~~~~~~l  244 (263)
                      .++...|++++|+..++++++.+|+++       .++..+|.++...|+   +++|+..|+++++++| .  +..+++.+
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p-~~~~~~~~~~l  159 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN---IEKAEENYKHATDVTS-KKWKTDALYSL  159 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTSSC-HHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc---HHHHHHHHHHHHhcCC-CcccHHHHHHH
Confidence            999999999999999999999999998       669999999999999   9999999999999998 4  56778877


Q ss_pred             HHHHhh
Q 024712          245 CLVMFV  250 (263)
Q Consensus       245 ~~~~~~  250 (263)
                      +.++..
T Consensus       160 ~~~~~~  165 (228)
T 4i17_A          160 GVLFYN  165 (228)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777655

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.89  E-value=6.8e-21  Score=151.79  Aligned_cols=170  Identities=14%  Similarity=0.059  Sum_probs=122.6

Q ss_pred             CcchHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMD-------CQCL-------DVAKDCIKVLQK-QFPESKRVGRLEGILLEAKGLWAEAEKAYSSL  124 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  124 (263)
                      .|..+.+|..+|..+..       .|++       ++|+..|++++. ..|++..++..+|.++...|++++|...|+++
T Consensus        46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  125 (308)
T 2ond_A           46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  125 (308)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            56666666666666553       4665       677777777777 57777777777777777777777777777777


Q ss_pred             HhcCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cccHHHHHHHHHHHHhhCCCCHHH
Q 024712          125 LEDNPLDPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS-LQMYKQAAFCYEELILSQPTVPLY  202 (263)
Q Consensus       125 ~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~  202 (263)
                      ++..|.++. +|..+|.++...|++++|+..|+++++..|.+..+|...+.+... .|++++|+.+|+++++.+|+++.+
T Consensus       126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  205 (308)
T 2ond_A          126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY  205 (308)
T ss_dssp             HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence            777777765 777777777777777777777777777777776666655555433 577777777777777777777777


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          203 HLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       203 ~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      +..+|.++...|+   +++|+..|++++..
T Consensus       206 ~~~~~~~~~~~g~---~~~A~~~~~~al~~  232 (308)
T 2ond_A          206 VLAYIDYLSHLNE---DNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHTTCC---HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCC---HHHHHHHHHHHHhc
Confidence            7777777777777   77777777777774

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.89  E-value=2e-21  Score=153.33  Aligned_cols=168  Identities=14%  Similarity=-0.004  Sum_probs=159.1

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (263)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  140 (263)
                      |.....+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            56777888999999999999999999999999999999999999999999999999999999999999977777777787


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCCCc
Q 024712          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVDN  218 (263)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~  218 (263)
                      .+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.+++..+|++  ..++..++.++...|+   
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~---  270 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT---  270 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT---
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC---
Confidence            88889999999999999999999999999999999999999999999999999999998  8899999999999999   


Q ss_pred             HHHHHHHHHHhhc
Q 024712          219 ILLAKKYYASTID  231 (263)
Q Consensus       219 ~~~A~~~~~~al~  231 (263)
                      .++|...|++++.
T Consensus       271 ~~~a~~~~r~al~  283 (287)
T 3qou_A          271 GDALASXYRRQLY  283 (287)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9999999999875

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.88  E-value=1.2e-20  Score=160.92  Aligned_cols=173  Identities=17%  Similarity=0.085  Sum_probs=155.3

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      .|....++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|
T Consensus       306 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  385 (537)
T 3fp2_A          306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA  385 (537)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            67778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHH------HHHHHHHHHhc----------ccHHHHHHHHHHHHhhCCCCHHHH
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMADHDA------WRELAEIYVSL----------QMYKQAAFCYEELILSQPTVPLYH  203 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~  203 (263)
                      .++...|++++|+..++++++..|.+...      +..+|.++...          |++++|+.+|++++..+|+++.++
T Consensus       386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  465 (537)
T 3fp2_A          386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK  465 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999999988766433      45667888888          999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          204 LAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       204 ~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ..+|.++...|+   +++|+..|+++++++|.
T Consensus       466 ~~l~~~~~~~g~---~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          466 IGLAQLKLQMEK---IDEAIELFEDSAILART  494 (537)
T ss_dssp             HHHHHHHHHTTC---HHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhcc---HHHHHHHHHHHHHhCCC
Confidence            999999999999   99999999999999886

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.88  E-value=1.4e-21  Score=171.53  Aligned_cols=196  Identities=14%  Similarity=-0.007  Sum_probs=167.4

Q ss_pred             hccCChhHHHHHHHHHhc-CcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 024712           34 LKVRRPDKVLRHGLSILN-DPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG  112 (263)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~  112 (263)
                      ....+.++++......+. ........+|+...++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            445566677776666651 1111224578889999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712          113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (263)
Q Consensus       113 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  192 (263)
                      ++++|+..|+++++.+|+++.++.++|.++...|++++ +..|+++++.+|++..+++++|.++...|++++|+..|+++
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  560 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV  560 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHhh
Q 024712          193 ILSQPTVPLYHLAYADVLYTLGG-----VDNILLAKKYYASTI  230 (263)
Q Consensus       193 l~~~p~~~~~~~~la~~~~~~g~-----~~~~~~A~~~~~~al  230 (263)
                      ++++|++..++.++|.++...++     .+.+++|...+....
T Consensus       561 l~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          561 PPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             CTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             cccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            99999999999999999977554     122556665555443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=8.8e-22  Score=166.77  Aligned_cols=186  Identities=13%  Similarity=0.068  Sum_probs=171.4

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      .|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|
T Consensus       267 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  345 (514)
T 2gw1_A          267 FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA  345 (514)
T ss_dssp             CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHH
T ss_pred             Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHH
Confidence            566 8888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHh-
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL------YHLAYADVLYT-  212 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~-  212 (263)
                      .++...|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++...|.++.      ++..+|.++.. 
T Consensus       346 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  425 (514)
T 2gw1_A          346 CLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN  425 (514)
T ss_dssp             HHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTS
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999888855      89999999999 


Q ss_pred             --cCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          213 --LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       213 --~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                        .|+   +++|+..|++++..+|+ +..+++.++.++..
T Consensus       426 ~~~~~---~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~  461 (514)
T 2gw1_A          426 PTVEN---FIEATNLLEKASKLDPR-SEQAKIGLAQMKLQ  461 (514)
T ss_dssp             CCTTH---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             hhcCC---HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence              999   99999999999999986 77777777776655

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.88  E-value=1.3e-21  Score=166.80  Aligned_cols=168  Identities=17%  Similarity=0.065  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  143 (263)
                      ..++..+|..+...|++++|+..+++++...|+ +.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF  321 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            446778899999999999999999999999999 8999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 024712          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK  223 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~  223 (263)
                      ..|++++|+..++++++.+|.++.++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|+   +++|+
T Consensus       322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~  398 (537)
T 3fp2_A          322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD---FDTAI  398 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC---HHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC---HHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHhhccCCC
Q 024712          224 KYYASTIDLTGG  235 (263)
Q Consensus       224 ~~~~~al~~~~~  235 (263)
                      ..|+++++.+|.
T Consensus       399 ~~~~~a~~~~~~  410 (537)
T 3fp2_A          399 KQYDIAKRLEEV  410 (537)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCc
Confidence            999999999875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.88  E-value=3.4e-21  Score=165.96  Aligned_cols=164  Identities=12%  Similarity=-0.049  Sum_probs=138.0

Q ss_pred             cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 024712           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN  156 (263)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  156 (263)
                      .|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHhhccC
Q 024712          157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL---GGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       157 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~~~~A~~~~~~al~~~  233 (263)
                      ++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...   |+   +++|...|+++++.+
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---LDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---HHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999   88   999999999999999


Q ss_pred             CCcchhHHHhH
Q 024712          234 GGKNTKALFGI  244 (263)
Q Consensus       234 ~~~~~~~~~~l  244 (263)
                      |+ ....+..+
T Consensus       159 p~-~~~~~~~l  168 (568)
T 2vsy_A          159 VG-AVEPFAFL  168 (568)
T ss_dssp             CC-CSCHHHHT
T ss_pred             Cc-ccChHHHh
Confidence            96 54444433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.87  E-value=7.2e-21  Score=131.52  Aligned_cols=120  Identities=11%  Similarity=-0.031  Sum_probs=115.6

Q ss_pred             cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH
Q 024712           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK  136 (263)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  136 (263)
                      ..++|+....+..+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++++|+++.++.
T Consensus         6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   85 (126)
T 4gco_A            6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI   85 (126)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712          137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (263)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  176 (263)
                      .+|.++...|++++|+..|+++++++|++..++..++.++
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.87  E-value=6.2e-20  Score=146.26  Aligned_cols=174  Identities=9%  Similarity=-0.061  Sum_probs=161.8

Q ss_pred             cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR-VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR  137 (263)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  137 (263)
                      ++|+...+|..++..+...|++++|+.+|+++++..|.++. ++..+|.++...|++++|...|++++...|.+..++..
T Consensus        94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  173 (308)
T 2ond_A           94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT  173 (308)
T ss_dssp             TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            47888899999999999999999999999999999999886 89999999999999999999999999999999888877


Q ss_pred             HHHHHHH-cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh---CCC-CHHHHHHHHHHHHh
Q 024712          138 RVAIAKA-QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS---QPT-VPLYHLAYADVLYT  212 (263)
Q Consensus       138 l~~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~  212 (263)
                      .+.+... .|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|++++..   .|+ ...+|..++..+..
T Consensus       174 ~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~  253 (308)
T 2ond_A          174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN  253 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            7766544 799999999999999999999999999999999999999999999999995   553 67899999999999


Q ss_pred             cCCCCcHHHHHHHHHHhhccCCC
Q 024712          213 LGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       213 ~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .|+   ++.|...+.++++..|+
T Consensus       254 ~g~---~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          254 IGD---LASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HSC---HHHHHHHHHHHHHHTTT
T ss_pred             cCC---HHHHHHHHHHHHHHccc
Confidence            999   99999999999999996

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.87  E-value=3e-20  Score=147.02  Aligned_cols=168  Identities=14%  Similarity=0.041  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------H
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------P  132 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~  132 (263)
                      ..+...+.++...|++++|+..|.+++...+      ..+.++..+|.++...|++++|+.+|++++.+.|..      .
T Consensus        38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a  117 (292)
T 1qqe_A           38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (292)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3566678888999999999999999999753      235688999999999999999999999999987643      3


Q ss_pred             HHHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH----
Q 024712          133 VLHKRRVAIAKAQ-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL----  201 (263)
Q Consensus       133 ~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----  201 (263)
                      .++..+|.++... |++++|+.+|++++++.|.+      ..++..+|.++..+|++++|+.+|++++.+.|.+..    
T Consensus       118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  197 (292)
T 1qqe_A          118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS  197 (292)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence            5788999999996 99999999999999998865      567899999999999999999999999999987643    


Q ss_pred             ---HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          202 ---YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       202 ---~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                         ++..+|.++...|+   +++|+.+|+++++++|+
T Consensus       198 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~  231 (292)
T 1qqe_A          198 LKDYFLKKGLCQLAATD---AVAAARTLQEGQSEDPN  231 (292)
T ss_dssp             HHHHHHHHHHHHHHTTC---HHHHHHHHHGGGCC---
T ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence               57899999999999   99999999999999996

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.86  E-value=7.5e-22  Score=140.45  Aligned_cols=115  Identities=14%  Similarity=-0.044  Sum_probs=94.3

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712          118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  197 (263)
                      -..+++++..+|+++.+++.+|.+++..|++++|+..|++++..+|.++.+|+.+|.++...|++++|+.+|++++.++|
T Consensus        22 ~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P  101 (151)
T 3gyz_A           22 GATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK  101 (151)
T ss_dssp             SCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             CCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence            34556677778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       198 ~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +++.++.++|.++..+|+   +++|+..|++++++.|+
T Consensus       102 ~~~~~~~~lg~~~~~lg~---~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          102 NDYTPVFHTGQCQLRLKA---PLKAKECFELVIQHSND  136 (151)
T ss_dssp             SCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCC
T ss_pred             CCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Confidence            888888888888888888   88888888888888775

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.86  E-value=1.5e-20  Score=146.82  Aligned_cols=170  Identities=18%  Similarity=0.148  Sum_probs=153.4

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc----
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED----  127 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----  127 (263)
                      .|....++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|+.++++++..    
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999873        566788999999999999999999999999987    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712          128 ----NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       128 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  195 (263)
                          +|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++..
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                4566778999999999999999999999999998        6777889999999999999999999999999976


Q ss_pred             C-------------------------------------------------CCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 024712          196 Q-------------------------------------------------PTVPLYHLAYADVLYTLGGVDNILLAKKYY  226 (263)
Q Consensus       196 ~-------------------------------------------------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~  226 (263)
                      .                                                 |..+.++..+|.++...|+   +++|..+|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~  275 (283)
T 3edt_B          199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK---LEAAHTLE  275 (283)
T ss_dssp             HHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred             HHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHH
Confidence            2                                                 3345578899999999999   99999999


Q ss_pred             HHhhcc
Q 024712          227 ASTIDL  232 (263)
Q Consensus       227 ~~al~~  232 (263)
                      +++++.
T Consensus       276 ~~al~~  281 (283)
T 3edt_B          276 DCASRN  281 (283)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            999876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.86  E-value=1.8e-19  Score=140.12  Aligned_cols=178  Identities=11%  Similarity=0.085  Sum_probs=153.4

Q ss_pred             hccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHH
Q 024712           34 LKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEA  110 (263)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~  110 (263)
                      ...++.+.++.....++..    .+.+|....++..+|.+++..|++++|+..|++++..+|+   .+.+++.+|.++..
T Consensus        26 ~~~g~~~~A~~~~~~~l~~----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~  101 (261)
T 3qky_A           26 YNQGKYDRAIEYFKAVFTY----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYK  101 (261)
T ss_dssp             HHTTCHHHHHHHHHHHGGG----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHH
Confidence            4566788888888887765    1112233889999999999999999999999999999885   46788999999999


Q ss_pred             --------cCcHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCChhHHHHHHHHHHHhcCC-
Q 024712          111 --------KGLWAEAEKAYSSLLEDNPLDPVLH-----------------KRRVAIAKAQGNFPTAIEWLNKYLETFMA-  164 (263)
Q Consensus       111 --------~~~~~~A~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-  164 (263)
                              .|++++|+..|++++...|+++.+.                 ..+|.++...|++++|+..|+++++.+|+ 
T Consensus       102 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  181 (261)
T 3qky_A          102 LSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT  181 (261)
T ss_dssp             HCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             hcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence                    9999999999999999999987655                 78899999999999999999999999998 


Q ss_pred             --CHHHHHHHHHHHHhc----------ccHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHhcCC
Q 024712          165 --DHDAWRELAEIYVSL----------QMYKQAAFCYEELILSQPTVPL---YHLAYADVLYTLGG  215 (263)
Q Consensus       165 --~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~  215 (263)
                        .+.+++.+|.++...          |++++|+..|+++++..|+++.   +...++.++...++
T Consensus       182 ~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~  247 (261)
T 3qky_A          182 PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE  247 (261)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence              467999999999977          9999999999999999999964   55566777666666

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.85  E-value=9.9e-19  Score=146.87  Aligned_cols=210  Identities=11%  Similarity=-0.045  Sum_probs=171.2

Q ss_pred             CChhHHHHHHHHHhcCc--ccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHH
Q 024712           37 RRPDKVLRHGLSILNDP--KKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGI  106 (263)
Q Consensus        37 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~  106 (263)
                      ++.++++......+.-.  .......|....+|.++|.++...|++++|+.+++++++..        +..+.++..+|.
T Consensus        65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~  144 (472)
T 4g1t_A           65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW  144 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence            44555555444433210  11233466778889999999999999999999999998863        245677888887


Q ss_pred             HHHHc--CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh---
Q 024712          107 LLEAK--GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS---  178 (263)
Q Consensus       107 ~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---  178 (263)
                      ++...  +++++|+.+|+++++.+|+++.++..++.++..   .++.++|+..++++++++|.++.++..+|..+..   
T Consensus       145 ~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~  224 (472)
T 4g1t_A          145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE  224 (472)
T ss_dssp             HHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-
T ss_pred             HHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh
Confidence            76654  579999999999999999999999999888654   5778899999999999999999999998877654   


Q ss_pred             -cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          179 -LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       179 -~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                       .|++++|+.++++++..+|.++.++..+|.++...|+   +++|+..|.++++.+|+ +..+++.++.++..
T Consensus       225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~  293 (472)
T 4g1t_A          225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE---PDKAIELLKKALEYIPN-NAYLHCQIGCCYRA  293 (472)
T ss_dssp             -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc---hHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHH
Confidence             4678899999999999999999999999999999999   99999999999999996 78888877777543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.85  E-value=3.2e-21  Score=137.19  Aligned_cols=116  Identities=15%  Similarity=0.002  Sum_probs=105.0

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 024712           85 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA  164 (263)
Q Consensus        85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  164 (263)
                      ..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|+++++++|+
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            34566777788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 024712          165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  200 (263)
Q Consensus       165 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  200 (263)
                      ++.+|+.+|.++...|++++|+.+|++++++.|+.+
T Consensus       103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999998765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.85  E-value=7.1e-21  Score=148.49  Aligned_cols=159  Identities=17%  Similarity=0.034  Sum_probs=145.0

Q ss_pred             HHHHcCChHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 024712           73 AAMDCQCLDVAKDCIKVLQKQF----PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF  148 (263)
Q Consensus        73 ~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  148 (263)
                      .....|++++|+..++++++..    |.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence            3345688999999999999974    457789999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712          149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (263)
Q Consensus       149 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~  228 (263)
                      ++|+..++++++.+|.++.++..+|.++...|++++|+.+|+++++.+|+++.....++.+ ...|+   +++|+..+.+
T Consensus        94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~---~~~A~~~~~~  169 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD---EKQAKEVLKQ  169 (275)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC---HHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998766655544 66688   9999999999


Q ss_pred             hhccCCC
Q 024712          229 TIDLTGG  235 (263)
Q Consensus       229 al~~~~~  235 (263)
                      ++...|+
T Consensus       170 ~~~~~~~  176 (275)
T 1xnf_A          170 HFEKSDK  176 (275)
T ss_dssp             HHHHSCC
T ss_pred             HHhcCCc
Confidence            8888775

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.85  E-value=5.9e-20  Score=154.33  Aligned_cols=207  Identities=16%  Similarity=0.104  Sum_probs=148.7

Q ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHh-----cC-------cccccccCcchHHHHHHHHHHHHH----cCChHHHHHH
Q 024712           23 GAWEYLCLVKKLKVRRPDKVLRHGLSIL-----ND-------PKKRSALGPDVWTLYEQVSIAAMD----CQCLDVAKDC   86 (263)
Q Consensus        23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~   86 (263)
                      .|+.++.......+.+++....++....     ..       ......++|+...++..++..+..    .+++++|+.+
T Consensus       156 ~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~  235 (472)
T 4g1t_A          156 RAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKL  235 (472)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            6778888777777777665554443321     11       012234577777777777665544    4677788888


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-------------------CC
Q 024712           87 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-------------------GN  147 (263)
Q Consensus        87 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~  147 (263)
                      +++++...|.++.++..+|.++...|++++|+..++++++.+|++..++..+|.+|...                   +.
T Consensus       236 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~  315 (472)
T 4g1t_A          236 VEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLEL  315 (472)
T ss_dssp             HHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHH
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Confidence            88888888888888888888888888888888888888888888888888888777543                   23


Q ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH---HHHHHHHH-HHhcCCCCcHHHHH
Q 024712          148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL---YHLAYADV-LYTLGGVDNILLAK  223 (263)
Q Consensus       148 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~-~~~~g~~~~~~~A~  223 (263)
                      +++|+..++++++.+|.+..++..+|.++...|++++|+.+|++++...|.+..   ++..+|.+ +...|+   +++|+
T Consensus       316 ~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Ai  392 (472)
T 4g1t_A          316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC---EDKAI  392 (472)
T ss_dssp             HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC---HHHHH
T ss_pred             HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC---HHHHH
Confidence            567888888888888888888888888888888888888888888887776543   34555554 346677   88888


Q ss_pred             HHHHHhhcc
Q 024712          224 KYYASTIDL  232 (263)
Q Consensus       224 ~~~~~al~~  232 (263)
                      .+|.+++++
T Consensus       393 ~~y~kal~i  401 (472)
T 4g1t_A          393 HHFIEGVKI  401 (472)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhc
Confidence            888777655

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.85  E-value=5e-20  Score=146.00  Aligned_cols=173  Identities=13%  Similarity=0.139  Sum_probs=156.3

Q ss_pred             cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-
Q 024712           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ--------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-  127 (263)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-  127 (263)
                      ....|..+.++..+|..+...|++++|+.+++++++.        .|....++..+|.++...|++++|+.++++++.. 
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   99 (311)
T 3nf1_A           20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR   99 (311)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            3446778899999999999999999999999999994        5677888999999999999999999999999987 


Q ss_pred             -------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712          128 -------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF--------MADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (263)
Q Consensus       128 -------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  192 (263)
                             .|....++..+|.++...|++++|+..++++++..        |....++..+|.++...|++++|+.+++++
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                   34556789999999999999999999999999885        555778999999999999999999999999


Q ss_pred             Hhh--------CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          193 ILS--------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       193 l~~--------~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      +..        .|....++..+|.++...|+   +++|+.+|+++++.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~  224 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGK---FKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence            988        66667789999999999999   99999999999975

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.85  E-value=6.1e-20  Score=138.03  Aligned_cols=137  Identities=14%  Similarity=0.020  Sum_probs=123.2

Q ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHcCChhHHHHHHHHHHH
Q 024712           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR----------------RVAIAKAQGNFPTAIEWLNKYLE  160 (263)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~l~  160 (263)
                      ++..++..|..+...|++++|+..|++++..+|+++.++..                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       161 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      .+|+++.+++.+|.++...|++++|+.+|+++++++|+++.++..+|.+++..|+. ....+...|.+++..+|
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~  155 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ-EKKKLETDYKKLSSPTK  155 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-HHHHHHHHHC---CCCH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCCCc
Confidence            99999999999999999999999999999999999999999999999999887641 14567788888776544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.85  E-value=1.4e-18  Score=135.88  Aligned_cols=175  Identities=14%  Similarity=0.030  Sum_probs=136.5

Q ss_pred             cchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCCCCH
Q 024712           61 PDVWTLYEQVSIAAMD----CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDP  132 (263)
Q Consensus        61 ~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~  132 (263)
                      |....++..+|.++..    .+++++|+..|+++++..  ++.++..+|.++..    .+++++|+.+|+++++.  +++
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~  110 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYA  110 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCc
Confidence            5566777788888888    888888888888888764  67788888888888    88888888888888876  367


Q ss_pred             HHHHHHHHHHHH----cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHH
Q 024712          133 VLHKRRVAIAKA----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHL  204 (263)
Q Consensus       133 ~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~  204 (263)
                      .++..+|.++..    .+++++|+.+|+++++..  ++.++..+|.++..    .+++++|+.+|+++++.  .++.++.
T Consensus       111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~  186 (273)
T 1ouv_A          111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCF  186 (273)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence            788888888888    888888888888888764  57778888888887    88888888888888876  3567788


Q ss_pred             HHHHHHHh----cCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          205 AYADVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       205 ~la~~~~~----~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                      .+|.++..    .++   +++|+.+|+++++..|   ..+++.+..++.
T Consensus       187 ~lg~~~~~g~~~~~~---~~~A~~~~~~a~~~~~---~~a~~~l~~~~~  229 (273)
T 1ouv_A          187 NAGNMYHHGEGATKN---FKEALARYSKACELEN---GGGCFNLGAMQY  229 (273)
T ss_dssp             HHHHHHHHTCSSCCC---HHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCcc---HHHHHHHHHHHHhCCC---HHHHHHHHHHHH
Confidence            88888888    788   8888888888888755   344454544443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.84  E-value=4.6e-20  Score=146.22  Aligned_cols=197  Identities=18%  Similarity=0.150  Sum_probs=165.9

Q ss_pred             cCChhHHHHHHHHHhcCcccc-cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHH
Q 024712           36 VRRPDKVLRHGLSILNDPKKR-SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGI  106 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~  106 (263)
                      .++.+.++......+...... ....|....++..+|.++...|++++|+..+++++...        |....++..+|.
T Consensus        40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  119 (311)
T 3nf1_A           40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV  119 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            445666666666655421111 11256778889999999999999999999999999873        556788899999


Q ss_pred             HHHHcCcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHHH
Q 024712          107 LLEAKGLWAEAEKAYSSLLEDN--------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMADHDAWR  170 (263)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~  170 (263)
                      ++...|++++|+.++++++...        |....++..+|.++...|++++|+.++++++..        .|....++.
T Consensus       120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  199 (311)
T 3nf1_A          120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN  199 (311)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9999999999999999999874        445578899999999999999999999999998        677778899


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhh-------------------------------------------------CCCCHH
Q 024712          171 ELAEIYVSLQMYKQAAFCYEELILS-------------------------------------------------QPTVPL  201 (263)
Q Consensus       171 ~la~~~~~~g~~~~A~~~~~~al~~-------------------------------------------------~p~~~~  201 (263)
                      .+|.++...|++++|+.++++++..                                                 .|..+.
T Consensus       200 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  279 (311)
T 3nf1_A          200 NLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTT  279 (311)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHH
Confidence            9999999999999999999999974                                                 355567


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       202 ~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ++..+|.++...|+   +++|..+|++++++.|.
T Consensus       280 ~~~~la~~~~~~g~---~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          280 TLKNLGALYRRQGK---FEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHHHHHHTC---HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHCCC---HHHHHHHHHHHHHHhhc
Confidence            89999999999999   99999999999988763

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.84  E-value=3.7e-19  Score=130.23  Aligned_cols=159  Identities=13%  Similarity=0.092  Sum_probs=146.2

Q ss_pred             cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA  115 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~  115 (263)
                      .++.+.++......+..       .|....++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus        21 ~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   93 (186)
T 3as5_A           21 AGRYSQAVMLLEQVYDA-------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYD   93 (186)
T ss_dssp             HTCHHHHHHHHTTTCCT-------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             hcCHHHHHHHHHHHHHh-------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Confidence            34566666666555443       67778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712          116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       116 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  195 (263)
                      +|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++++++.
T Consensus        94 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A           94 LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHH
Q 024712          196 QPTVPL  201 (263)
Q Consensus       196 ~p~~~~  201 (263)
                      .|+++.
T Consensus       174 ~~~~~~  179 (186)
T 3as5_A          174 DEGASV  179 (186)
T ss_dssp             HHCCCG
T ss_pred             CCCchh
Confidence            887653

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.84  E-value=4.4e-18  Score=135.11  Aligned_cols=216  Identities=13%  Similarity=0.099  Sum_probs=183.2

Q ss_pred             HHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhC
Q 024712           25 WEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC----------LDVAKDCIKVLQKQF   94 (263)
Q Consensus        25 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~   94 (263)
                      ...+...+..+ .-.++++.....++..       +|+...+|...+.++...+.          +++++.++..++..+
T Consensus        33 ~~~~~~~~~~~-e~s~eaL~~t~~~L~~-------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~  104 (331)
T 3dss_A           33 TQAVFQKRQAG-ELDESVLELTSQILGA-------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN  104 (331)
T ss_dssp             HHHHHHHHHTT-CCSHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHH-------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence            33344333332 3456678877777766       89999999988888776655          689999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHhcCCCHHHHHH
Q 024712           95 PESKRVGRLEGILLEAKGL--WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN-FPTAIEWLNKYLETFMADHDAWRE  171 (263)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~  171 (263)
                      |.+..+|...+.++...+.  +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+..+|..
T Consensus       105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~  184 (331)
T 3dss_A          105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY  184 (331)
T ss_dssp             TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999999994  9999999999999999999999999999999998 599999999999999999999999


Q ss_pred             HHHHHHhc--------------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCC-------CcHHHHHHHHHHh
Q 024712          172 LAEIYVSL--------------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGV-------DNILLAKKYYAST  229 (263)
Q Consensus       172 la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~-------~~~~~A~~~~~~a  229 (263)
                      .+.++...              +.++++++++.+++..+|++..+|..+..++... |..       +.++++++.+.++
T Consensus       185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el  264 (331)
T 3dss_A          185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL  264 (331)
T ss_dssp             HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH
Confidence            99998877              6799999999999999999999998776666655 210       1289999999999


Q ss_pred             hccCCCcchhHHHhHHHHHh
Q 024712          230 IDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       230 l~~~~~~~~~~~~~l~~~~~  249 (263)
                      +++.|+ +.+.+.++++...
T Consensus       265 le~~pd-~~w~l~~~~~~~~  283 (331)
T 3dss_A          265 QELEPE-NKWCLLTIILLMR  283 (331)
T ss_dssp             HHHCTT-CHHHHHHHHHHHH
T ss_pred             HhhCcc-cchHHHHHHHHHH
Confidence            999997 7787777766543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.84  E-value=8.5e-18  Score=131.34  Aligned_cols=186  Identities=10%  Similarity=-0.020  Sum_probs=162.9

Q ss_pred             cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 024712           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMD----CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA-  110 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-  110 (263)
                      ..+.+.++......+..         ..+.++..+|.++..    .+++++|+..|+++++.  +++.++..+|.++.. 
T Consensus        55 ~~~~~~A~~~~~~a~~~---------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~  123 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDL---------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDG  123 (273)
T ss_dssp             CCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcC
Confidence            34455555555555443         357788899999999    99999999999999986  488999999999999 


Q ss_pred             ---cCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----c
Q 024712          111 ---KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----L  179 (263)
Q Consensus       111 ---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~  179 (263)
                         .+++++|+.+|+++++.+  ++.++..+|.++..    .+++++|+.+++++++.  .++.+++.+|.++..    .
T Consensus       124 ~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~  199 (273)
T 1ouv_A          124 KVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGAT  199 (273)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSC
T ss_pred             CCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCC
Confidence               999999999999999975  67889999999999    99999999999999987  468999999999999    9


Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCCCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712          180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALF  242 (263)
Q Consensus       180 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~~~~A~~~~~~al~~~~~~~~~~~~  242 (263)
                      +++++|+.+|+++++..|  +.++..+|.++..    .++   +++|+.+|++++++.|+ .....+
T Consensus       200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~---~~~A~~~~~~a~~~~~~-~a~~~l  260 (273)
T 1ouv_A          200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRN---EKQAIENFKKGCKLGAK-GACDIL  260 (273)
T ss_dssp             CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCC---STTHHHHHHHHHHHTCH-HHHHHH
T ss_pred             ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccC---HHHHHHHHHHHHHcCCH-HHHHHH
Confidence            999999999999999866  8899999999999    888   99999999999999885 444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.83  E-value=4.7e-20  Score=131.06  Aligned_cols=116  Identities=13%  Similarity=-0.016  Sum_probs=66.9

Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 024712           86 CIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD  165 (263)
Q Consensus        86 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  165 (263)
                      .+++++...|+++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|++
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   88 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE   88 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712          166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       166 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                      +.+++.+|.++...|++++|+.+|++++++.|+++.
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence            555555555555555555555555555555555443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.83  E-value=8.5e-18  Score=132.67  Aligned_cols=214  Identities=11%  Similarity=0.072  Sum_probs=184.7

Q ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCcHHH
Q 024712           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ--CLDVAKDCIKVLQKQFPESKRV  100 (263)
Q Consensus        23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~  100 (263)
                      ++..+++..+..+. ..++++.....++..       +|+...+|...+.++...+  ++++++..+..++..+|++..+
T Consensus        34 ~~~~~~~a~~~~~e-~s~~aL~~t~~~L~~-------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a  105 (306)
T 3dra_A           34 QIMGLLLALMKAEE-YSERALHITELGINE-------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI  105 (306)
T ss_dssp             HHHHHHHHHHHTTC-CSHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH
T ss_pred             HHHHHHHHHHHcCC-CCHHHHHHHHHHHHH-------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH
Confidence            45666776666653 345677777666655       8999999999999999999  9999999999999999999999


Q ss_pred             HHHHHHHH----HHc---CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHhcCCCHHHHHH
Q 024712          101 GRLEGILL----EAK---GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP--TAIEWLNKYLETFMADHDAWRE  171 (263)
Q Consensus       101 ~~~~a~~~----~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~l~~~p~~~~~~~~  171 (263)
                      |..++.++    ...   +++++++.++.++++.+|.+..+|...+.++...|.++  +++..+.++++.+|.+..+|..
T Consensus       106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~  185 (306)
T 3dra_A          106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSH  185 (306)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999    666   78999999999999999999999999999999999999  9999999999999999999999


Q ss_pred             HHHHHHhccc------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH-HHHHHHHhhccC---CCcchhHH
Q 024712          172 LAEIYVSLQM------YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL-AKKYYASTIDLT---GGKNTKAL  241 (263)
Q Consensus       172 la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~-A~~~~~~al~~~---~~~~~~~~  241 (263)
                      .+.+....+.      ++++++++.+++..+|++..+|..++.++...|+   ..+ ...++.+++.++   |. ...++
T Consensus       186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~-s~~al  261 (306)
T 3dra_A          186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR---SITQLEEFSLQFVDLEKDQVT-SSFAL  261 (306)
T ss_dssp             HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---CGGGGHHHHHTTEEGGGTEES-CHHHH
T ss_pred             HHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC---ChHHHHHHHHHHHhccCCCCC-CHHHH
Confidence            9999999987      9999999999999999999999999999999887   444 556777777765   42 55555


Q ss_pred             HhHHHHH
Q 024712          242 FGICLVM  248 (263)
Q Consensus       242 ~~l~~~~  248 (263)
                      ..++-++
T Consensus       262 ~~la~~~  268 (306)
T 3dra_A          262 ETLAKIY  268 (306)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.82  E-value=2.7e-20  Score=150.11  Aligned_cols=154  Identities=16%  Similarity=0.147  Sum_probs=143.0

Q ss_pred             HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---------------HHHHHHHHH
Q 024712           76 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---------------PVLHKRRVA  140 (263)
Q Consensus        76 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~  140 (263)
                      ..+++++|+..++.++...|..+.++..+|.+++..|++++|+..|++++..+|.+               ..++.++|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            35677888888888888889999999999999999999999999999999999998               589999999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712          141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL  220 (263)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~  220 (263)
                      ++...|++++|+..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...|+   ++
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~  281 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR---QL  281 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH---HH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999   98


Q ss_pred             HH-HHHHHHhhcc
Q 024712          221 LA-KKYYASTIDL  232 (263)
Q Consensus       221 ~A-~~~~~~al~~  232 (263)
                      +| ...|++++..
T Consensus       282 ~a~~~~~~~~~~~  294 (336)
T 1p5q_A          282 AREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            88 5567776644

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.82  E-value=1.6e-18  Score=120.04  Aligned_cols=132  Identities=23%  Similarity=0.265  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (263)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  179 (263)
                      ++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            45566677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       180 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      |++++|+..+++++...|.++.++..+|.++...|+   +++|...|.+++..+|
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDP  134 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHST
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCC
Confidence            777777777777777777777777777777777777   7777777777776665

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.82  E-value=2e-19  Score=142.23  Aligned_cols=181  Identities=14%  Similarity=0.046  Sum_probs=147.7

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCCCC---
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEAK-GLWAEAEKAYSSLLEDNPLD---  131 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~---  131 (263)
                      ....++.++|.++...|++++|+.+++++++..|..      ..++..+|.++... |++++|+.+|++++...|.+   
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            356789999999999999999999999999987632      45788999999996 99999999999999987754   


Q ss_pred             ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712          132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD-------AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                         ..++..+|.++..+|++++|+..|+++++..|.+..       ++..+|.++...|++++|+.+|++++.++|....
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence               457889999999999999999999999999987653       6789999999999999999999999999998765


Q ss_pred             H-----HHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhH
Q 024712          202 Y-----HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGI  244 (263)
Q Consensus       202 ~-----~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l  244 (263)
                      .     +..++..+. .++.+++++|+..|.+++.++|. ....+..+
T Consensus       235 ~~~~~~l~~l~~~~~-~~~~~~~~~A~~~~~~~~~l~~~-~~~~~~~~  280 (292)
T 1qqe_A          235 SRESNFLKSLIDAVN-EGDSEQLSEHCKEFDNFMRLDKW-KITILNKI  280 (292)
T ss_dssp             ---HHHHHHHHHHHH-TTCTTTHHHHHHHHTTSSCCCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH-cCCHHHHHHHHHHhccCCccHHH-HHHHHHHH
Confidence            3     445566553 34444499999999999999885 44444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.82  E-value=1.2e-19  Score=129.00  Aligned_cols=115  Identities=13%  Similarity=0.013  Sum_probs=111.4

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712          118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  197 (263)
                      -..|++++..+|.+...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+.+|++++.++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       198 ~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +++.++..+|.++...|+   +++|+..|+++++++|+
T Consensus        87 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGE---LAEAESGLFLAQELIAN  121 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTT
T ss_pred             CCchHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcC
Confidence            999999999999999999   99999999999999886

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.82  E-value=3.8e-18  Score=118.16  Aligned_cols=135  Identities=21%  Similarity=0.193  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA  144 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  144 (263)
                      .++..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712          145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  199 (263)
Q Consensus       145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  199 (263)
                      .|++++|+..+++++...|.+..++..+|.++...|++++|+.++++++..+|.+
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999999999999999999998863

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.81  E-value=1.3e-19  Score=127.83  Aligned_cols=112  Identities=14%  Similarity=0.042  Sum_probs=51.5

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH
Q 024712           89 VLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA  168 (263)
Q Consensus        89 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  168 (263)
                      +++...|++...++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|+++.+
T Consensus         9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   88 (142)
T 2xcb_A            9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF   88 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence            33334444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 024712          169 WRELAEIYVSLQMYKQAAFCYEELILSQPTVP  200 (263)
Q Consensus       169 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  200 (263)
                      ++.+|.++...|++++|+.+|++++.++|+++
T Consensus        89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           89 PFHAAECHLQLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            44444444444444444444444444444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.81  E-value=1.6e-18  Score=149.24  Aligned_cols=150  Identities=9%  Similarity=-0.047  Sum_probs=141.6

Q ss_pred             ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712           58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR  137 (263)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  137 (263)
                      ..+|+...++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..
T Consensus        17 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   96 (568)
T 2vsy_A           17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW   96 (568)
T ss_dssp             ----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            34778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---ccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024712          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL---QMYKQAAFCYEELILSQPTVPLYHLAYA  207 (263)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la  207 (263)
                      +|.++...|++++|+..++++++.+|++..++..+|.++...   |++++|+..++++++.+|.+...+..++
T Consensus        97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A           97 LGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            999999999999999999999999999999999999999999   9999999999999999999877776666

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.80  E-value=2.6e-18  Score=118.47  Aligned_cols=115  Identities=23%  Similarity=0.199  Sum_probs=76.9

Q ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (263)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  176 (263)
                      ++..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            44556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HhcccHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q 024712          177 VSLQMYKQAAFCYEELILSQ------PTVPLYHLAYADVLY  211 (263)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~  211 (263)
                      ...|++++|+..|++++.++      |.+..++..++.+..
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            66666666666666666666      666666666655543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.80  E-value=7.4e-19  Score=128.54  Aligned_cols=153  Identities=11%  Similarity=-0.014  Sum_probs=130.4

Q ss_pred             CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712           94 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA  173 (263)
Q Consensus        94 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la  173 (263)
                      +|......+.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            3444556788999999999999999999999999999999999999999999999999999999999999 887776666


Q ss_pred             HHHH-hcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC-cchhHHHhHHHHHhh
Q 024712          174 EIYV-SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLVMFV  250 (263)
Q Consensus       174 ~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~-~~~~~~~~l~~~~~~  250 (263)
                      .+.. ..+...+|+..+++++..+|+++.++..+|.++...|+   +++|+..|+++++.+|+ .+..++..++.++..
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~  156 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR---DEEALELLWNILKVNLGAQDGEVKKTFMDILSA  156 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence            5543 23344568999999999999999999999999999999   99999999999999986 345566666666544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.80  E-value=1.9e-18  Score=126.31  Aligned_cols=129  Identities=12%  Similarity=0.003  Sum_probs=104.2

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCh--hHH
Q 024712           75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI-AKAQGNF--PTA  151 (263)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~--~~A  151 (263)
                      ...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.+ +...|++  ++|
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            4567888888888888888888888888888888888888888888888888888888888888888 7788887  888


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH
Q 024712          152 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (263)
Q Consensus       152 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  203 (263)
                      +..++++++.+|.++.+++.+|.++...|++++|+..|++++..+|.++...
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            8888888888888888888888888888888888888888888888775443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.80  E-value=9e-19  Score=123.50  Aligned_cols=114  Identities=17%  Similarity=0.042  Sum_probs=107.8

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712          119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (263)
Q Consensus       119 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  198 (263)
                      ..|++++..+|++...++.+|..++..|++++|+..|++++..+|.++.+|+.+|.++...|++++|+.+|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       199 ~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ++.++..+|.++...|+   +++|+..|+++++++|+
T Consensus        85 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~  118 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGD---LDGAESGFYSARALAAA  118 (142)
T ss_dssp             CTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Confidence            99999999999999999   99999999999999886

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.80  E-value=1.8e-18  Score=141.71  Aligned_cols=165  Identities=13%  Similarity=0.011  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHh---CC---CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC-------HH
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQ---FP---ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-------PV  133 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~---~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~  133 (263)
                      +..+|..+...|++++|+..+++++..   .+   ..+.++..+|.++...|++++|+..+++++...+..       ..
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            344899999999999999999999986   23   355788999999999999999999999999874332       35


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH------HHHHHHHHHHHhcccHHHHHHHHHHHHh-----hC-CCCHH
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH------DAWRELAEIYVSLQMYKQAAFCYEELIL-----SQ-PTVPL  201 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~  201 (263)
                      ++..+|.++...|++++|+..++++++..|...      .++.++|.+|...|++++|+.++++++.     .+ |..+.
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  265 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ  265 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence            889999999999999999999999998865442      5889999999999999999999999998     45 77788


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       202 ~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      ++..+|.++...|+   +++|..++++++++.+
T Consensus       266 ~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          266 AYFLITQIHYKLGK---IDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Confidence            99999999999999   9999999999998854

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.79  E-value=5.8e-18  Score=133.50  Aligned_cols=156  Identities=7%  Similarity=-0.077  Sum_probs=143.0

Q ss_pred             HhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH
Q 024712           92 KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE  171 (263)
Q Consensus        92 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  171 (263)
                      ...|++...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+....+..
T Consensus       111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~  190 (287)
T 3qou_A          111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV  190 (287)
T ss_dssp             HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred             HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999977777777


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC-cchhHHHhHHHHHhh
Q 024712          172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLVMFV  250 (263)
Q Consensus       172 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~-~~~~~~~~l~~~~~~  250 (263)
                      .+..+...++.++|+..+++++..+|+++.++..+|.++...|+   +++|+..|.++++.+|+ .+..++..+..+...
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~---~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~  267 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR---NEEALELLFGHLRXDLTAADGQTRXTFQEILAA  267 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence            78888899999999999999999999999999999999999999   99999999999999997 226677766666554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.79  E-value=1.7e-18  Score=142.88  Aligned_cols=172  Identities=12%  Similarity=-0.006  Sum_probs=151.5

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCcHHHHHHHHHHHHhc------CCC
Q 024712           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPL  130 (263)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~  130 (263)
                      +.....+..+|..+...|++++|+..|+++++..|+++    .++..+|.++...|++++|+..+++++..      .|.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            45566777899999999999999999999999999876    57889999999999999999999999987      455


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh------cCCCHHHHHHHHHHHHhccc-----------------HHHHHH
Q 024712          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET------FMADHDAWRELAEIYVSLQM-----------------YKQAAF  187 (263)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~  187 (263)
                      ...++..+|.++...|++++|+..+++++..      .|....++..+|.++...|+                 +++|+.
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            6678999999999999999999999999988      56667789999999999999                 999999


Q ss_pred             HHHHHHhhC------CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          188 CYEELILSQ------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       188 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ++++++.+.      +....++..+|.++...|+   +++|+.+|++++++.+.
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~  255 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD---FQAAIEHHQERLRIARE  255 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHh
Confidence            999998764      2334588899999999999   99999999999988764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=1.2e-17  Score=142.73  Aligned_cols=173  Identities=13%  Similarity=0.071  Sum_probs=158.5

Q ss_pred             CcchHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMD-------CQCLD-------VAKDCIKVLQK-QFPESKRVGRLEGILLEAKGLWAEAEKAYSSL  124 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  124 (263)
                      .|..+.+|...+..+..       .|+++       +|+.++++++. ..|+++.++..++.++...|++++|...|+++
T Consensus       268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a  347 (530)
T 2ooe_A          268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  347 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            67778888888888876       79987       99999999997 78999999999999999999999999999999


Q ss_pred             HhcCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhcccHHHHHHHHHHHHhhCCCCHHH
Q 024712          125 LEDNPLDP-VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELILSQPTVPLY  202 (263)
Q Consensus       125 ~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~  202 (263)
                      ++..|.++ .+|..++.++...|++++|...|+++++..|.+...+...+.+ +...|++++|..+|+++++..|+++.+
T Consensus       348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~  427 (530)
T 2ooe_A          348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY  427 (530)
T ss_dssp             HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHH
Confidence            99999986 6999999999999999999999999999999888877776665 346899999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          203 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       203 ~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +..++.++...|+   .++|...|++++..+|.
T Consensus       428 ~~~~~~~~~~~g~---~~~Ar~~~~~al~~~~~  457 (530)
T 2ooe_A          428 VLAYIDYLSHLNE---DNNTRVLFERVLTSGSL  457 (530)
T ss_dssp             HHHHHHHHTTTTC---HHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHhCCC---HhhHHHHHHHHHhccCC
Confidence            9999999999999   99999999999998653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.79  E-value=3.1e-17  Score=129.65  Aligned_cols=169  Identities=9%  Similarity=-0.014  Sum_probs=140.6

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC-----
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR------VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-----  131 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----  131 (263)
                      ....+...+..++..|++++|...+++++...+..+.      .+..+|.++...|++++|+..+++++...+..     
T Consensus        74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  153 (293)
T 3u3w_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence            3444555678889999999999999999998776554      23357888888899999999999999864432     


Q ss_pred             -HHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----
Q 024712          132 -PVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----  199 (263)
Q Consensus       132 -~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----  199 (263)
                       ..++..+|.++...|++++|+.+++++++..       +....+++++|.+|..+|++++|+.++++++++.+..    
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~  233 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence             2378999999999999999999999999532       2234578999999999999999999999999876433    


Q ss_pred             --HHHHHHHHHHHHhcC-CCCcHHHHHHHHHHhhccCC
Q 024712          200 --PLYHLAYADVLYTLG-GVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       200 --~~~~~~la~~~~~~g-~~~~~~~A~~~~~~al~~~~  234 (263)
                        ..++..+|.++...| .   +++|+.+|++++.+..
T Consensus       234 ~~~~~~~~lg~~~~~~g~~---~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYE---EAEIEDAYKKASFFFD  268 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHH
Confidence              678999999999999 5   6999999999997743

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.79  E-value=3e-18  Score=134.69  Aligned_cols=167  Identities=8%  Similarity=-0.129  Sum_probs=141.3

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (263)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  140 (263)
                      |.....+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|++..++..+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhcCCCH-----HHHH--------------------------HHHHHHHhcccHHHHHHHH
Q 024712          141 IAKAQGNFPTAIEWLNKYLETFMADH-----DAWR--------------------------ELAEIYVSLQMYKQAAFCY  189 (263)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~--------------------------~la~~~~~~g~~~~A~~~~  189 (263)
                      ++...|++++|+..|+++++.+|++.     .++.                          .++.+  ..|++++|++.+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~  158 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEEC  158 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHH
Confidence            99999999999999999999988652     1111                          12222  357778888888


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHhhcc
Q 024712          190 EELILSQPTVPLYHLAYADVLYTL-GGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       190 ~~al~~~p~~~~~~~~la~~~~~~-g~~~~~~~A~~~~~~al~~  232 (263)
                      +++++.+|.+......++.++... +.   +++|...|.++.+.
T Consensus       159 ~~al~~~p~~~~~~~~l~~~~~~~~~~---~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          159 QRNHEGHEDDGHIRAQQACIEAKHDKY---MADMDELFSQVDEK  199 (281)
T ss_dssp             SGGGTTTSCHHHHTHHHHHHHHHHHHH---HHHHHHHHHHSSCT
T ss_pred             HhhhccccchhhhhhHHHHHHHHHHHH---HHHHHHHHHhhhcc
Confidence            888888887777777777666665 55   77788888877664

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.79  E-value=2.2e-17  Score=124.09  Aligned_cols=132  Identities=17%  Similarity=0.110  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA  144 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  144 (263)
                      ..+..+|..+...|++++|+..|++++  .| ++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++..
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            345566777777777777777776664  22 556667777777777777777777777777777777777777777777


Q ss_pred             cCChhHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712          145 QGNFPTAIEWLNKYLETFMADH----------------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  199 (263)
Q Consensus       145 ~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  199 (263)
                      .|++++|+..++++++..|.+.                .+++.+|.++...|++++|+..|++++..+|++
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            7777777777777777665554                666777777777777777777777777776664

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.79  E-value=9.4e-18  Score=126.09  Aligned_cols=131  Identities=15%  Similarity=0.058  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  178 (263)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  178 (263)
                      ..++.+|..+...|++++|+..|++++  +| ++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++..
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            456788999999999999999999996  33 688999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          179 LQMYKQAAFCYEELILSQPTVP----------------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       179 ~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .|++++|+..|++++...|.+.                .++..+|.++...|+   +++|+..|+++++++|+
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSE  153 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCS
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCcc
Confidence            9999999999999999888877                899999999999999   99999999999999996

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.79  E-value=6.4e-17  Score=127.83  Aligned_cols=170  Identities=9%  Similarity=0.000  Sum_probs=144.1

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC----
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK------RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----  131 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----  131 (263)
                      .....+...+..++..|++++|+..+.++++..|...      ..+..+|.++...|++++|+..+++++...+..    
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  152 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence            3445566778889999999999999999999877543      345678888999999999999999999865443    


Q ss_pred             --HHHHHHHHHHHHHcCChhHHHHHHHHHH---HhcCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----
Q 024712          132 --PVLHKRRVAIAKAQGNFPTAIEWLNKYL---ETFMADH----DAWRELAEIYVSLQMYKQAAFCYEELILSQPT----  198 (263)
Q Consensus       132 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----  198 (263)
                        ..++..+|.++...|++++|+.++++++   +..|.+.    .+++++|.+|..+|++++|+.++++++.+.+.    
T Consensus       153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~  232 (293)
T 2qfc_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence              4588999999999999999999999999   4566643    68899999999999999999999999987542    


Q ss_pred             --CHHHHHHHHHHHHhcCCCCcHHHH-HHHHHHhhccCC
Q 024712          199 --VPLYHLAYADVLYTLGGVDNILLA-KKYYASTIDLTG  234 (263)
Q Consensus       199 --~~~~~~~la~~~~~~g~~~~~~~A-~~~~~~al~~~~  234 (263)
                        ...++.++|.++...|+   +++| ..+|++++.+..
T Consensus       233 ~~~~~~~~~lg~~y~~~g~---~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          233 ALIGQLYYQRGECLRKLEY---EEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             SSHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHH
Confidence              16789999999999999   9999 888999987643

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.79  E-value=4.2e-19  Score=132.29  Aligned_cols=155  Identities=14%  Similarity=0.017  Sum_probs=122.5

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH----------------HHHHH
Q 024712           74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----------------VLHKR  137 (263)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------~~~~~  137 (263)
                      ....|+++++.+.+.......+.....+..+|..++..|++++|+..|++++...|.++                .++..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (198)
T 2fbn_A           14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN   93 (198)
T ss_dssp             --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence            34456777777777666665566777888889999999999999999999999888876                78899


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCC
Q 024712          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD  217 (263)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  217 (263)
                      +|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..|++++.++|+++.++..++.++...++  
T Consensus        94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--  171 (198)
T 2fbn_A           94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE--  171 (198)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999888  


Q ss_pred             cHHHHH-HHHHHhhc
Q 024712          218 NILLAK-KYYASTID  231 (263)
Q Consensus       218 ~~~~A~-~~~~~al~  231 (263)
                       ..++. ..|.+.+.
T Consensus       172 -~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          172 -ARKKDKLTFGGMFD  185 (198)
T ss_dssp             -HHC-----------
T ss_pred             -HHHHHHHHHHHHhc
Confidence             77776 44544443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.79  E-value=1.3e-18  Score=135.74  Aligned_cols=155  Identities=13%  Similarity=0.113  Sum_probs=137.8

Q ss_pred             HHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--------CCCCHHHHHHH
Q 024712           75 MDCQCLDVAKDCIKVLQKQ--------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLDPVLHKRR  138 (263)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l  138 (263)
                      ...|++++|+.+++++++.        .|..+.++..+|.++...|++++|+..+++++..        +|....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3467888888888888874        2566788999999999999999999999999987        35556789999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--------CCCCHHH
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--------QPTVPLY  202 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~  202 (263)
                      |.++...|++++|+..+++++..        +|....++..+|.++...|++++|+.++++++..        .|....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999999988        4666788999999999999999999999999998        6666778


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          203 HLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       203 ~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      +..+|.++...|+   +++|+.+|++++++
T Consensus       172 ~~~la~~~~~~g~---~~~A~~~~~~~l~~  198 (283)
T 3edt_B          172 KNNLASCYLKQGK---YQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHTC---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence            9999999999999   99999999999986

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.79  E-value=5.1e-17  Score=128.21  Aligned_cols=194  Identities=8%  Similarity=0.003  Sum_probs=169.3

Q ss_pred             ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHH----HHc---CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 024712           38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAA----MDC---QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA  110 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~  110 (263)
                      ..++.+.....++..       +|....+|...+.++    ...   +++++++.++.++++.+|.+..+|...+.+...
T Consensus        84 ~~~eeL~~~~~~L~~-------nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~  156 (306)
T 3dra_A           84 NLYDELDWCEEIALD-------NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT  156 (306)
T ss_dssp             CHHHHHHHHHHHHHH-------CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH-------CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            444455544444433       888889999888887    666   789999999999999999999999999999999


Q ss_pred             cCcHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccH
Q 024712          111 KGLWA--EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN------FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY  182 (263)
Q Consensus       111 ~~~~~--~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  182 (263)
                      .|.++  ++++++.++++.+|.+..+|...+.++...|.      +++++.++.+++..+|.+..+|+.++.++...|+.
T Consensus       157 l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~  236 (306)
T 3dra_A          157 FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRS  236 (306)
T ss_dssp             TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCC
T ss_pred             hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCC
Confidence            99998  99999999999999999999999999999887      89999999999999999999999999999999885


Q ss_pred             HH-HHHHHHHHHhhC---CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc-cCCCcchhHHH
Q 024712          183 KQ-AAFCYEELILSQ---PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID-LTGGKNTKALF  242 (263)
Q Consensus       183 ~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~-~~~~~~~~~~~  242 (263)
                      .. ...++.+++.++   |.++.++..++.++...|+   .++|++.|..+.+ .+|. ....|.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~---~~~A~~~~~~l~~~~Dpi-r~~yW~  297 (306)
T 3dra_A          237 ITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK---YNESRTVYDLLKSKYNPI-RSNFWD  297 (306)
T ss_dssp             GGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCGG-GHHHHH
T ss_pred             hHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhccChH-HHHHHH
Confidence            55 556777777776   8899999999999999999   9999999999986 7885 444444

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.79  E-value=4e-17  Score=124.07  Aligned_cols=162  Identities=15%  Similarity=0.120  Sum_probs=138.6

Q ss_pred             ccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHH-
Q 024712           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR---VGRLEGILLEA-  110 (263)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~a~~~~~-  110 (263)
                      ..++.+.++.....++..    .+.+|....++..+|.++...|++++|+..|+++++.+|+++.   +++.+|.++.. 
T Consensus        16 ~~g~~~~A~~~~~~~~~~----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~   91 (225)
T 2yhc_A           16 QDGNWRQAITQLEALDNR----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMAL   91 (225)
T ss_dssp             HHTCHHHHHHHHHHHHHH----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhh
Confidence            345667777777776654    1223445678999999999999999999999999999998764   78888988876 


Q ss_pred             -----------------cCcHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCChhHHHHHHH
Q 024712          111 -----------------KGLWAEAEKAYSSLLEDNPLDPVLH-----------------KRRVAIAKAQGNFPTAIEWLN  156 (263)
Q Consensus       111 -----------------~~~~~~A~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~  156 (263)
                                       .|++++|+..|+++++..|+++.+.                 ..+|.++...|++++|+..|+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  171 (225)
T 2yhc_A           92 DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVE  171 (225)
T ss_dssp             HC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence                             5799999999999999999987543                 567889999999999999999


Q ss_pred             HHHHhcCCCH---HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 024712          157 KYLETFMADH---DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  200 (263)
Q Consensus       157 ~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  200 (263)
                      ++++.+|+++   .+++.+|.++..+|++++|+..++.+....|++.
T Consensus       172 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          172 GMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred             HHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence            9999999986   6799999999999999999999999999888753

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.78  E-value=2.1e-18  Score=142.30  Aligned_cols=189  Identities=16%  Similarity=0.067  Sum_probs=132.4

Q ss_pred             cCChhHHHHHHHHHhcCcccccccCcc----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHH
Q 024712           36 VRRPDKVLRHGLSILNDPKKRSALGPD----VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEG  105 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a  105 (263)
                      .++.+.++......+..       .|+    ...++..+|.++...|++++|+..++++++.      .|....++..+|
T Consensus        61 ~g~~~~A~~~~~~al~~-------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  133 (411)
T 4a1s_A           61 AGDCRAGVAFFQAAIQA-------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG  133 (411)
T ss_dssp             TTCHHHHHHHHHHHHHH-------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHh-------cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence            34555666555555443       222    2356777788888888888888888877776      345566777788


Q ss_pred             HHHHHcCcHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCC-----------------hhHHHHHHHHHHHhc
Q 024712          106 ILLEAKGLWAEAEKAYSSLLED------NPLDPVLHKRRVAIAKAQGN-----------------FPTAIEWLNKYLETF  162 (263)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~l~~~  162 (263)
                      .++...|++++|+..+++++..      .|....++..+|.++...|+                 +++|+..++++++..
T Consensus       134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~  213 (411)
T 4a1s_A          134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM  213 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            8888888888888888887776      34445577777888888887                 777777777777653


Q ss_pred             ------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712          163 ------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL------YHLAYADVLYTLGGVDNILLAKKYYASTI  230 (263)
Q Consensus       163 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~~~~A~~~~~~al  230 (263)
                            +....++..+|.++...|++++|+.++++++.+.|....      ++..+|.++...|+   +++|+.+|++++
T Consensus       214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al  290 (411)
T 4a1s_A          214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ---FEDAAEHYKRTL  290 (411)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC---HHHHHHHHHHHH
Confidence                  223456777788888888888888888887776654322      67777888888888   888888888777


Q ss_pred             ccCC
Q 024712          231 DLTG  234 (263)
Q Consensus       231 ~~~~  234 (263)
                      .+.+
T Consensus       291 ~~~~  294 (411)
T 4a1s_A          291 ALAV  294 (411)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7655

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.78  E-value=2.1e-18  Score=141.65  Aligned_cols=166  Identities=17%  Similarity=0.116  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------H
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQF------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------P  132 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~  132 (263)
                      .++..+|.++...|++++|+..+++++...      |....++..+|.++...|++++|+..+++++...|..      .
T Consensus        48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  127 (406)
T 3sf4_A           48 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA  127 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchH
Confidence            344455555555555555555555554431      2233444555555555555555555555555543321      2


Q ss_pred             HHHHHHHHHHHHcCC--------------------hhHHHHHHHHHHHh------cCCCHHHHHHHHHHHHhcccHHHHH
Q 024712          133 VLHKRRVAIAKAQGN--------------------FPTAIEWLNKYLET------FMADHDAWRELAEIYVSLQMYKQAA  186 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~  186 (263)
                      .++..+|.++...|+                    +++|+..+++++..      .|....++..+|.++...|++++|+
T Consensus       128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  207 (406)
T 3sf4_A          128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV  207 (406)
T ss_dssp             HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence            244555555555555                    55555555555544      2222334555555555555555555


Q ss_pred             HHHHHHHhhCCCCHH------HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712          187 FCYEELILSQPTVPL------YHLAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       187 ~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~  233 (263)
                      .++++++.+.|....      ++..+|.++...|+   +++|+.+|++++.+.
T Consensus       208 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~  257 (406)
T 3sf4_A          208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE---FETASEYYKKTLLLA  257 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHH
Confidence            555555544332221      45555555555555   555555555555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.78  E-value=2e-17  Score=119.09  Aligned_cols=130  Identities=14%  Similarity=0.045  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  178 (263)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  178 (263)
                      ..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++..
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            44555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHH--HHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712          179 LQMYKQAAFCYEELILSQPTVPLYHLAY--ADVLYTLGGVDNILLAKKYYASTID  231 (263)
Q Consensus       179 ~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~g~~~~~~~A~~~~~~al~  231 (263)
                      .|++++|+.+|++++..+|.++.++..+  +..+...|+   +++|+..+.++..
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~  145 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRS  145 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHHHcccchHH
Confidence            6666666666666666666665555333  333555566   6666666665543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.78  E-value=4.7e-17  Score=117.13  Aligned_cols=134  Identities=13%  Similarity=-0.033  Sum_probs=124.4

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  141 (263)
                      .....+..+|..++..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH--HHHHhcccHHHHHHHHHHHHhh
Q 024712          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELA--EIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~  195 (263)
                      +...|++++|+..++++++.+|.+..++..++  ..+...|++++|+..+.++...
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            99999999999999999999999999885554  4488899999999999887654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.78  E-value=1.1e-17  Score=115.80  Aligned_cols=118  Identities=16%  Similarity=0.125  Sum_probs=61.6

Q ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (263)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  176 (263)
                      ++..+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712          177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (263)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (263)
                      ...|++++|+.++++++..+|.+..++..++.++...|
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            55555555555555555555555555555555554443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.78  E-value=3.8e-18  Score=135.86  Aligned_cols=168  Identities=13%  Similarity=0.081  Sum_probs=145.8

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--C---
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--D---  131 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~---  131 (263)
                      -...+...+.++...|++++|+..+.++++..+.      ...++..+|.++...|++++|+.+|++++.+.+.  +   
T Consensus        35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~  114 (307)
T 2ifu_A           35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT  114 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            3446677788899999999999999999998652      2457889999999999999999999999987432  2   


Q ss_pred             -HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-----
Q 024712          132 -PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-----  199 (263)
Q Consensus       132 -~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----  199 (263)
                       ..++.++|.++.. |++++|+.+|++++++.|..      ..++..+|.++..+|++++|+.+|++++.+.|.+     
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  193 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT  193 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence             3578899999998 99999999999999988754      5788999999999999999999999999986644     


Q ss_pred             -HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          200 -PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       200 -~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                       ..++..+|.++...|+   +++|+.+|++++ ++|.
T Consensus       194 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al-~~p~  226 (307)
T 2ifu_A          194 CYKKCIAQVLVQLHRAD---YVAAQKCVRESY-SIPG  226 (307)
T ss_dssp             HHHHHHHHHHHHHHTTC---HHHHHHHHHHHT-TSTT
T ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHh-CCCC
Confidence             2377889999999999   999999999999 9886

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.78  E-value=1.4e-17  Score=136.42  Aligned_cols=195  Identities=8%  Similarity=-0.051  Sum_probs=147.6

Q ss_pred             hccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------cHHHHHHHHH
Q 024712           34 LKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-------SKRVGRLEGI  106 (263)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~~a~  106 (263)
                      ...++.+.++......+..... ...++....++..+|.++...|++++|+..++++++..+.       ...++..+|.
T Consensus       114 ~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  192 (383)
T 3ulq_A          114 LDQREYLSAIKFFKKAESKLIF-VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT  192 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            4456677777777776654111 1112346788999999999999999999999999998543       3457889999


Q ss_pred             HHHHcCcHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHH-----hc-CCCHHHHHHHHH
Q 024712          107 LLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLE-----TF-MADHDAWRELAE  174 (263)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~-----~~-p~~~~~~~~la~  174 (263)
                      ++...|++++|+..+++++...+...      .++.++|.++...|++++|+.+++++++     .+ |..+.++..+|.
T Consensus       193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  272 (383)
T 3ulq_A          193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ  272 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence            99999999999999999998754332      4889999999999999999999999999     45 777889999999


Q ss_pred             HHHhcccHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712          175 IYVSLQMYKQAAFCYEELILSQP-----TVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (263)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a  229 (263)
                      ++...|++++|+.++++++.+.+     .....+..+|.++...|+...+++|+..+++.
T Consensus       273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~  332 (383)
T 3ulq_A          273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK  332 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            99999999999999999998742     22222344555555555422233444444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.78  E-value=2.6e-17  Score=124.02  Aligned_cols=167  Identities=11%  Similarity=-0.117  Sum_probs=149.1

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----cHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG----LWAEAEKAYSSLLEDNPLDPVLHKR  137 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~~~~~~p~~~~~~~~  137 (263)
                      ..+.++..+|..+...+++++|+..|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|+++.+  +.++.++..
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~   90 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV   90 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence            45778888999999999999999999999874  688999999999998 7    99999999999975  678999999


Q ss_pred             HHHHHHH----cCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024712          138 RVAIAKA----QGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (263)
Q Consensus       138 l~~~~~~----~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la  207 (263)
                      +|.++..    .+++++|+.+|+++++..|.  ++.+++.||.+|..    .+++++|+.+|+++++. |.++.++..+|
T Consensus        91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg  169 (212)
T 3rjv_A           91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAG  169 (212)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence            9999988    88999999999999998873  48999999999999    88999999999999998 77788999999


Q ss_pred             HHHHhc-C--CCCcHHHHHHHHHHhhccCC
Q 024712          208 DVLYTL-G--GVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       208 ~~~~~~-g--~~~~~~~A~~~~~~al~~~~  234 (263)
                      .+|... |  ...++++|+.+|+++.+..+
T Consensus       170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            999875 3  12229999999999998854

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.77  E-value=1e-17  Score=122.40  Aligned_cols=125  Identities=10%  Similarity=0.064  Sum_probs=116.6

Q ss_pred             HHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhcccH--HH
Q 024712          108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI-YVSLQMY--KQ  184 (263)
Q Consensus       108 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~--~~  184 (263)
                      +...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            34568999999999999999999999999999999999999999999999999999999999999999 8899999  99


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          185 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       185 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      |+.++++++..+|+++.++..+|.++...|+   +++|+..|+++++++|+
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQAN---YAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCC
Confidence            9999999999999999999999999999999   99999999999999997

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=3.1e-17  Score=112.99  Aligned_cols=118  Identities=13%  Similarity=-0.037  Sum_probs=111.6

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA  140 (263)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  140 (263)
                      |.....+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChhHHHHHHHHHHHhc------CCCHHHHHHHHHHHHh
Q 024712          141 IAKAQGNFPTAIEWLNKYLETF------MADHDAWRELAEIYVS  178 (263)
Q Consensus       141 ~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~  178 (263)
                      ++...|++++|+..++++++.+      |.+..++..++.+...
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999      9999998888877654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.77  E-value=1.2e-17  Score=115.09  Aligned_cols=121  Identities=18%  Similarity=0.133  Sum_probs=87.3

Q ss_pred             CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 024712           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  174 (263)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~  174 (263)
                      |.++..+..+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   88 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence            34555666677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      ++...|++++|+.++++++..+|.++.++..+|.++...|+
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            77777777777777777777777777777777777776665

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.77  E-value=8.7e-18  Score=137.95  Aligned_cols=171  Identities=13%  Similarity=-0.038  Sum_probs=150.8

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCcHHHHHHHHHHHHhc------CCCC
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPLD  131 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~  131 (263)
                      .....+..+|..+...|++++|+..|+++++..|.++    .++..+|.++...|++++|+..+++++..      .|..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            4566778899999999999999999999999999874    57889999999999999999999999876      2344


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhccc--------------------HHHH
Q 024712          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQM--------------------YKQA  185 (263)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A  185 (263)
                      ..++..+|.++...|++++|+..+++++...|..      ..++..+|.++...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            5688999999999999999999999999987654      4588999999999999                    9999


Q ss_pred             HHHHHHHHhh------CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          186 AFCYEELILS------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       186 ~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +..+++++.+      .|....++..+|.++...|+   +++|+.+|++++++.|.
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~  219 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN---FRDAVIAHEQRLLIAKE  219 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHh
Confidence            9999999876      23335578999999999999   99999999999988654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.77  E-value=1.4e-17  Score=120.19  Aligned_cols=112  Identities=21%  Similarity=0.157  Sum_probs=77.8

Q ss_pred             CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 024712           96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI  175 (263)
Q Consensus        96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~  175 (263)
                      .++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++++|+++.+|+.+|.+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            44556666677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024712          176 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (263)
Q Consensus       176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  207 (263)
                      +...|++++|+.+|++++.++|+++..+...+
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  120 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG  120 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            77777777777777777777776666544444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.77  E-value=5.6e-18  Score=135.21  Aligned_cols=165  Identities=17%  Similarity=0.112  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------H
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------P  132 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~  132 (263)
                      .++..+|.++...|++++|+..+++++..      .|....++..+|.++...|++++|+..+++++...|..      .
T Consensus        44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  123 (338)
T 3ro2_A           44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA  123 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHH
Confidence            34444555555555555555555554443      12223344445555555555555555555554432221      1


Q ss_pred             HHHHHHHHHHHHcCC--------------------hhHHHHHHHHHHHh------cCCCHHHHHHHHHHHHhcccHHHHH
Q 024712          133 VLHKRRVAIAKAQGN--------------------FPTAIEWLNKYLET------FMADHDAWRELAEIYVSLQMYKQAA  186 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~  186 (263)
                      .++..+|.++...|+                    +++|+..+++++..      .|....++..+|.++...|++++|+
T Consensus       124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  203 (338)
T 3ro2_A          124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV  203 (338)
T ss_dssp             HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            244445555555555                    45555555444443      1122234444555555555555555


Q ss_pred             HHHHHHHhhCCCC------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          187 FCYEELILSQPTV------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       187 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      .++++++...+..      ..++..+|.++...|+   +++|..++++++.+
T Consensus       204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~  252 (338)
T 3ro2_A          204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE---FETASEYYKKTLLL  252 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence            5555554443221      1144445555555555   55555555555444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.77  E-value=1.8e-17  Score=132.25  Aligned_cols=169  Identities=14%  Similarity=-0.043  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCcHHHHHHHHHHHHhc------CCCCHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPLDPV  133 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~  133 (263)
                      ...+...|..+...|++++|+..++++++..|+++    .++..+|.++...|++++|+..+++++..      .|....
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            44566789999999999999999999999999874    67889999999999999999999999876      344467


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhccc--------------------HHHHHH
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQM--------------------YKQAAF  187 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~  187 (263)
                      ++..+|.++...|++++|+..++++++..|..      ..++..+|.++...|+                    +++|+.
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            88999999999999999999999999886654      3488999999999999                    999999


Q ss_pred             HHHHHHhhC------CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          188 CYEELILSQ------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       188 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .+++++...      +....++..+|.++...|+   +++|+.++++++++.+.
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~  215 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN---FRDAVIAHEQRLLIAKE  215 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHh
Confidence            999998762      3335588999999999999   99999999999988654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=6.7e-18  Score=144.66  Aligned_cols=200  Identities=11%  Similarity=0.086  Sum_probs=176.4

Q ss_pred             HHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhC
Q 024712           25 WEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC----------LDVAKDCIKVLQKQF   94 (263)
Q Consensus        25 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~   94 (263)
                      ..++...+..+ ...++++.....++..       +|+...+|...+.++...|+          +++++..+++++..+
T Consensus        32 ~~~~~~~~~~~-~~~eeal~~~~~~l~~-------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~  103 (567)
T 1dce_A           32 TQAVFQKRQAG-ELDESVLELTSQILGA-------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN  103 (567)
T ss_dssp             HHHHHHHHHTT-CCSHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHH-------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC
Confidence            44444444333 3456667777776655       89999999999999988888          999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcC--cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCCCHHHHHH
Q 024712           95 PESKRVGRLEGILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG-NFPTAIEWLNKYLETFMADHDAWRE  171 (263)
Q Consensus        95 p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~  171 (263)
                      |++..+|..++.++...+  +++++++++.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|..
T Consensus       104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~  183 (567)
T 1dce_A          104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY  183 (567)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence            999999999999999999  7799999999999999999999999999999999 8999999999999999999999999


Q ss_pred             HHHHHHhc--------------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH------------HHHH
Q 024712          172 LAEIYVSL--------------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL------------AKKY  225 (263)
Q Consensus       172 la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~------------A~~~  225 (263)
                      .+.++...              +.++++++++.+++.++|++..+|..++.++...++   +++            |+..
T Consensus       184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~  260 (567)
T 1dce_A          184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP---HDVLCCVHVSREEACLSVC  260 (567)
T ss_dssp             HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC---CSCEEEEEEETTTTEEEEE
T ss_pred             HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC---ccceeeeeeccCCceEEEE
Confidence            99998874              778999999999999999999999999999999888   555            5666


Q ss_pred             HHHhhccCCC
Q 024712          226 YASTIDLTGG  235 (263)
Q Consensus       226 ~~~al~~~~~  235 (263)
                      |.+++.++|.
T Consensus       261 f~~~i~~~~~  270 (567)
T 1dce_A          261 FSRPLTVGSR  270 (567)
T ss_dssp             EEEEECTTBT
T ss_pred             eccceecccc
Confidence            7888887764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.76  E-value=2.1e-16  Score=126.01  Aligned_cols=187  Identities=11%  Similarity=0.017  Sum_probs=164.0

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHKRR  138 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l  138 (263)
                      .|+...++..+.......+..++|+.++.+++..+|++..+|..++.++...| .+++++.++..++..+|.+..+|...
T Consensus        50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR  129 (349)
T 3q7a_A           50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR  129 (349)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            44445555555555555566679999999999999999999999999999999 59999999999999999999999999


Q ss_pred             HHHHHHc-C-ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHH--------HHHHHHHHHHhhCCCCHHHHHHHHH
Q 024712          139 VAIAKAQ-G-NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK--------QAAFCYEELILSQPTVPLYHLAYAD  208 (263)
Q Consensus       139 ~~~~~~~-g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la~  208 (263)
                      +.++... + ++++++.++.++++.+|.+..+|...+.+....|.++        ++++++.++++.+|.|..+|...+.
T Consensus       130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~  209 (349)
T 3q7a_A          130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWY  209 (349)
T ss_dssp             HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999988 8 8999999999999999999999999999999999888        9999999999999999999999999


Q ss_pred             HHHhcCCC----CcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712          209 VLYTLGGV----DNILLAKKYYASTIDLTGGKNTKALFGICLV  247 (263)
Q Consensus       209 ~~~~~g~~----~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~  247 (263)
                      ++...+..    ..++++++++.+++..+|+ +..+|+.+.-.
T Consensus       210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~L  251 (349)
T 3q7a_A          210 LRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGF  251 (349)
T ss_dssp             HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            99988751    1268999999999999997 77777544333

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.76  E-value=5.1e-17  Score=130.89  Aligned_cols=136  Identities=13%  Similarity=-0.031  Sum_probs=128.2

Q ss_pred             cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCcHHHHHHHHHH
Q 024712           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---------------KRVGRLEGILLEAKGLWAEAEKAYSS  123 (263)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~  123 (263)
                      ..|....++..+|..++..|++++|+..|++++...|.+               ..++..+|.++...|++++|+..|++
T Consensus       142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  221 (336)
T 1p5q_A          142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK  221 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            356678889999999999999999999999999999988               68999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHH-HHHHHHHHh
Q 024712          124 LLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA-AFCYEELIL  194 (263)
Q Consensus       124 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~  194 (263)
                      ++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...|++++| ...|.+++.
T Consensus       222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999 556777664

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=4e-16  Score=133.23  Aligned_cols=174  Identities=9%  Similarity=-0.061  Sum_probs=158.8

Q ss_pred             cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR  137 (263)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  137 (263)
                      ..|+...++..++..+...|++++|..+|+++++..|.++ .++..++.++.+.|++++|...|++++...|.....+..
T Consensus       316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~  395 (530)
T 2ooe_A          316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT  395 (530)
T ss_dssp             TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence            4788899999999999999999999999999999999875 689999999999999999999999999998888777766


Q ss_pred             HHHHH-HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHh
Q 024712          138 RVAIA-KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL----YHLAYADVLYT  212 (263)
Q Consensus       138 l~~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~  212 (263)
                      .+.+. ...|++++|...|+++++.+|+++.+|..++.++...|++++|..+|++++...|.++.    +|.........
T Consensus       396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~  475 (530)
T 2ooe_A          396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN  475 (530)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            66553 46899999999999999999999999999999999999999999999999998876654    78888888888


Q ss_pred             cCCCCcHHHHHHHHHHhhccCCC
Q 024712          213 LGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       213 ~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .|+   .+.+...+.++++..|+
T Consensus       476 ~G~---~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          476 IGD---LASILKVEKRRFTAFRE  495 (530)
T ss_dssp             SSC---HHHHHHHHHHHHHHTHH
T ss_pred             cCC---HHHHHHHHHHHHHHCch
Confidence            999   99999999999999884

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.76  E-value=4.6e-17  Score=112.13  Aligned_cols=125  Identities=11%  Similarity=-0.033  Sum_probs=118.9

Q ss_pred             ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712           58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR  137 (263)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  137 (263)
                      ..+|.....+..+|..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.++.++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            34567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccH
Q 024712          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY  182 (263)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  182 (263)
                      +|.++...|++++|+..++++++.+|.++.++..+|.++...|++
T Consensus        86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999988875

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.76  E-value=3.6e-17  Score=133.85  Aligned_cols=167  Identities=11%  Similarity=-0.054  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-------CH
Q 024712           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------DP  132 (263)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-------~~  132 (263)
                      .+..+|..+...|++++|+..+++++...+      ..+.++..+|.++...|++++|+..+++++...+.       ..
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            566789999999999999999999998643      34568889999999999999999999999986432       13


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------CHHHHHHHHHHHHhcccHHHHHHHHHHHHh-----hCCCCHH
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------DHDAWRELAEIYVSLQMYKQAAFCYEELIL-----SQPTVPL  201 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~  201 (263)
                      .++..+|.++...|++++|+..++++++..+.      ...++.++|.++...|++++|+.++++++.     .+|..+.
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            57889999999999999999999999987432      245788999999999999999999999999     7787788


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       202 ~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ++..+|.++...|+   +++|..++++++++.+.
T Consensus       263 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          263 VLFGLSWTLCKAGQ---TQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHH
Confidence            99999999999999   99999999999988553

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.75  E-value=6.1e-17  Score=112.04  Aligned_cols=125  Identities=13%  Similarity=0.030  Sum_probs=118.8

Q ss_pred             cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH
Q 024712           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK  136 (263)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  136 (263)
                      ....|.....+..+|..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.+..++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   88 (133)
T 2lni_A            9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT   88 (133)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence            34466788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712          137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM  181 (263)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  181 (263)
                      .+|.++...|++++|+..+++++..+|.+..++..++.++...|+
T Consensus        89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           89 RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999987764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.75  E-value=5.3e-16  Score=123.17  Aligned_cols=170  Identities=12%  Similarity=0.021  Sum_probs=153.4

Q ss_pred             HHHHcCChH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCc----------HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712           73 AAMDCQCLD-VAKDCIKVLQKQFPESKRVGRLEGILLEAKGL----------WAEAEKAYSSLLEDNPLDPVLHKRRVAI  141 (263)
Q Consensus        73 ~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~  141 (263)
                      .....|+++ +|+..+..++..+|++..+|...+.++...+.          +++++.++..++..+|.++.+|...+.+
T Consensus        38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl  117 (331)
T 3dss_A           38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL  117 (331)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            334567776 89999999999999999999999999988776          7899999999999999999999999999


Q ss_pred             HHHcCC--hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC--
Q 024712          142 AKAQGN--FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM-YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV--  216 (263)
Q Consensus       142 ~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--  216 (263)
                      +...|+  +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+..+|...+.++...+..  
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~  197 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD  197 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred             HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence            999994  8999999999999999999999999999999998 69999999999999999999999999999887210  


Q ss_pred             ---------CcHHHHHHHHHHhhccCCCcchhHHHh
Q 024712          217 ---------DNILLAKKYYASTIDLTGGKNTKALFG  243 (263)
Q Consensus       217 ---------~~~~~A~~~~~~al~~~~~~~~~~~~~  243 (263)
                               +.++++++++.+++..+|+ +..+|+.
T Consensus       198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y  232 (331)
T 3dss_A          198 SGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFY  232 (331)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred             cccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence                     1289999999999999997 7777753

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.75  E-value=3.8e-17  Score=112.88  Aligned_cols=101  Identities=11%  Similarity=0.100  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-------HHHH
Q 024712           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-------DAWR  170 (263)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~  170 (263)
                      +.++..+|..++..|+|++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|.+.       .++.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            344556666666666666666666666666666666666666666666666666666666666655442       3455


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712          171 ELAEIYVSLQMYKQAAFCYEELILSQPT  198 (263)
Q Consensus       171 ~la~~~~~~g~~~~A~~~~~~al~~~p~  198 (263)
                      .+|.++...|++++|+.+|++++...|+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            5666666666666666666666665553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=2.2e-16  Score=135.33  Aligned_cols=174  Identities=11%  Similarity=0.017  Sum_probs=156.3

Q ss_pred             HHHcCCh-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCc----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712           74 AMDCQCL-DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL----------WAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (263)
Q Consensus        74 ~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  142 (263)
                      ....|++ ++|+..+.+++..+|++..+|..++.++...|+          +++++.++++++..+|+++.+|...+.++
T Consensus        38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l  117 (567)
T 1dce_A           38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  117 (567)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3445554 578999999999999999999999999999988          99999999999999999999999999999


Q ss_pred             HHcC--ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC---
Q 024712          143 KAQG--NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV---  216 (263)
Q Consensus       143 ~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---  216 (263)
                      ...|  ++++++..++++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|...+.++...+..   
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence            9999  6699999999999999999999999999999999 999999999999999999999999999999886221   


Q ss_pred             --------CcHHHHHHHHHHhhccCCCcchhHHHhHHHHH
Q 024712          217 --------DNILLAKKYYASTIDLTGGKNTKALFGICLVM  248 (263)
Q Consensus       217 --------~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~  248 (263)
                              +.+++|++++.+++.++|+ +..+|+.+....
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll  236 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLL  236 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHH
Confidence                    2289999999999999997 666666554443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.75  E-value=1.9e-18  Score=144.91  Aligned_cols=152  Identities=13%  Similarity=0.102  Sum_probs=134.1

Q ss_pred             cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q 024712           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---------------PVLHKRRVAI  141 (263)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~  141 (263)
                      .+++++|+..++..+...|..+..+..+|..++..|+|++|+..|++++..+|.+               ..++.++|.+
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888888889999999999999999999999999999999998               6899999999


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH
Q 024712          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  221 (263)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~  221 (263)
                      +..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|+   +++
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~  403 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE---HNE  403 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH---HHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999   877


Q ss_pred             HHH-HHHHhhc
Q 024712          222 AKK-YYASTID  231 (263)
Q Consensus       222 A~~-~~~~al~  231 (263)
                      |.. .|.+.+.
T Consensus       404 a~~~~~~~~f~  414 (457)
T 1kt0_A          404 RDRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHHHh
Confidence            764 4444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.75  E-value=2e-16  Score=107.92  Aligned_cols=117  Identities=21%  Similarity=0.221  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 024712           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  177 (263)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  177 (263)
                      ..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            56667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712          178 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (263)
Q Consensus       178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (263)
                      ..|++++|+.++++++..+|.++.++..++.++...|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            7777777777777777777777777777777766544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.75  E-value=7.9e-17  Score=116.23  Aligned_cols=119  Identities=13%  Similarity=-0.093  Sum_probs=111.7

Q ss_pred             cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (263)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  138 (263)
                      ..+.....+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++..++..+
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  177 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  177 (263)
                      |.++...|++++|+..|+++++++|++..+|+..+....
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT  124 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            999999999999999999999999999987776665543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.74  E-value=2.4e-16  Score=128.97  Aligned_cols=163  Identities=9%  Similarity=-0.127  Sum_probs=135.2

Q ss_pred             hccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------cHHHHHHHHH
Q 024712           34 LKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-------SKRVGRLEGI  106 (263)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~~a~  106 (263)
                      ...++.+.++......+..... ....+....++..+|.++...|+++.|+..++++++..+.       ...++..+|.
T Consensus       112 ~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  190 (378)
T 3q15_A          112 FDQKEYVEAIGYYREAEKELPF-VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG  190 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence            4456677777777666544211 1223457788999999999999999999999999987542       2456789999


Q ss_pred             HHHHcCcHHHHHHHHHHHHhcCC---C---CHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----hcCCCHHHHHHHHHH
Q 024712          107 LLEAKGLWAEAEKAYSSLLEDNP---L---DPVLHKRRVAIAKAQGNFPTAIEWLNKYLE-----TFMADHDAWRELAEI  175 (263)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~~~~~p---~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~la~~  175 (263)
                      ++...|++++|+..+++++...+   +   ...++.++|.++...|++++|+.++++++.     .+|..+.++..+|.+
T Consensus       191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  270 (378)
T 3q15_A          191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT  270 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence            99999999999999999998632   1   235788999999999999999999999999     778888999999999


Q ss_pred             HHhcccHHHHHHHHHHHHhhCC
Q 024712          176 YVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       176 ~~~~g~~~~A~~~~~~al~~~p  197 (263)
                      +...|++++|+.++++++.+.+
T Consensus       271 ~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          271 LCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999998744

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.74  E-value=7.2e-17  Score=112.59  Aligned_cols=105  Identities=17%  Similarity=0.069  Sum_probs=65.3

Q ss_pred             CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712           94 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA  173 (263)
Q Consensus        94 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la  173 (263)
                      .|.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.+++.+|
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            34455566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHhcccHHHHHHHHHHHHhhCCC
Q 024712          174 EIYVSLQMYKQAAFCYEELILSQPT  198 (263)
Q Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p~  198 (263)
                      .++...|++++|+..|++++.++|+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChh
Confidence            6666666666666666666666555

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.74  E-value=1.1e-15  Score=121.99  Aligned_cols=185  Identities=13%  Similarity=0.045  Sum_probs=168.9

Q ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCcHHHH
Q 024712           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQKQFPESKRVG  101 (263)
Q Consensus        23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~  101 (263)
                      .++.+++..+..... .++++.....++..       +|+...+|...+.++...| .+++++..++.++..+|++..+|
T Consensus        55 ~~~~~~r~~~~~~e~-se~AL~lt~~~L~~-------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW  126 (349)
T 3q7a_A           55 DAMDYFRAIAAKEEK-SERALELTEIIVRM-------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW  126 (349)
T ss_dssp             HHHHHHHHHHHTTCC-SHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHh-------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Confidence            577788877777654 45577777777655       8999999999999999999 59999999999999999999999


Q ss_pred             HHHHHHHHHc-C-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh--------HHHHHHHHHHHhcCCCHHHHHH
Q 024712          102 RLEGILLEAK-G-LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP--------TAIEWLNKYLETFMADHDAWRE  171 (263)
Q Consensus       102 ~~~a~~~~~~-~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~l~~~p~~~~~~~~  171 (263)
                      ..++.++... + ++++++.++.++++.+|.+..+|...+.+....|.++        +++..+.++++.+|.+..+|..
T Consensus       127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~  206 (349)
T 3q7a_A          127 HHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGW  206 (349)
T ss_dssp             HHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999998 7 8999999999999999999999999999999988888        9999999999999999999999


Q ss_pred             HHHHHHhccc-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          172 LAEIYVSLQM-------YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       172 la~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      .+.++...+.       ++++++++.+++..+|++..+|..+..++...|.
T Consensus       207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence            9999999886       7999999999999999999999999999988887

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.73  E-value=8.3e-17  Score=110.18  Aligned_cols=98  Identities=19%  Similarity=0.052  Sum_probs=49.4

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM  181 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  181 (263)
                      +.+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHhhCCCC
Q 024712          182 YKQAAFCYEELILSQPTV  199 (263)
Q Consensus       182 ~~~A~~~~~~al~~~p~~  199 (263)
                      +++|+..|+++++.+|.+
T Consensus       101 ~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A          101 ANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHhCcCC
Confidence            555555555555555543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.73  E-value=4.1e-16  Score=105.32  Aligned_cols=112  Identities=19%  Similarity=0.157  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 024712           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  177 (263)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  177 (263)
                      +..+..+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34555566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712          178 SLQMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (263)
Q Consensus       178 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (263)
                      ..|++++|+..+++++..+|+++.++..++.+
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            66666666666666666666666665555554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.73  E-value=2e-16  Score=110.31  Aligned_cols=107  Identities=10%  Similarity=-0.035  Sum_probs=101.7

Q ss_pred             hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 024712          126 EDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLA  205 (263)
Q Consensus       126 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  205 (263)
                      ..+|.++..+..+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++.++|+++.++..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            34678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          206 YADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       206 la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +|.++...|+   +++|+..|+++++++|+
T Consensus        83 l~~~~~~~~~---~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           83 LGQCQLEMES---YDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh---HHHHHHHHHHHHHHChh
Confidence            9999999999   99999999999999885

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.73  E-value=6.6e-15  Score=124.52  Aligned_cols=161  Identities=13%  Similarity=0.048  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHhcCCCCHH
Q 024712           63 VWTLYEQVSIAAMD----CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-----GLWAEAEKAYSSLLEDNPLDPV  133 (263)
Q Consensus        63 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~  133 (263)
                      ...++..++.++..    .+++++|+..|+++.+.  +++.+...+|.++...     +++++|+.+|+++.+.  .++.
T Consensus       254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~  329 (490)
T 2xm6_A          254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDAT  329 (490)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHH
T ss_pred             CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHH
Confidence            34566667777776    67778888888777654  4566777777777776     7788888888887764  4567


Q ss_pred             HHHHHHHHHHHcC---ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024712          134 LHKRRVAIAKAQG---NFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAY  206 (263)
Q Consensus       134 ~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l  206 (263)
                      ++..+|.++...|   ++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++++..  ++.++..+
T Consensus       330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L  405 (490)
T 2xm6_A          330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQL  405 (490)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHH
Confidence            7777888777765   677788888888765  567788888888877    778888888888887653  57778888


Q ss_pred             HHHHHh----cCCCCcHHHHHHHHHHhhccCC
Q 024712          207 ADVLYT----LGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       207 a~~~~~----~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      |.+|..    .++   +++|..+|+++++.+|
T Consensus       406 g~~y~~g~g~~~d---~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          406 GEIYYYGLGVERD---YVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHTSSSCCC---HHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCCCCCC---HHHHHHHHHHHHHCCC
Confidence            888877    667   8888888888887763

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.72  E-value=1.7e-16  Score=109.55  Aligned_cols=101  Identities=12%  Similarity=0.100  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-------HHHH
Q 024712          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-------LYHL  204 (263)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~  204 (263)
                      ..++..+|..++..|++++|+..|+++++++|+++.+|.++|.+|..+|++++|+..++++++++|++.       .++.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999999999988653       4788


Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          205 AYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       205 ~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ++|.++...|+   +++|+.+|++++...|+
T Consensus        88 ~lg~~~~~~~~---~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           88 RAGNAFQKQND---LSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHTTC---HHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHcCC---HHHHHHHHHHHHhhCcC
Confidence            99999999999   99999999999998875

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.72  E-value=3.1e-16  Score=118.07  Aligned_cols=157  Identities=10%  Similarity=0.010  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHH
Q 024712           82 VAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG----NFPTAIEWLNK  157 (263)
Q Consensus        82 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~  157 (263)
                      +|+..|+++.+.  .++.+++.+|.++...+++++|+.+|+++.+.  .++.++..+|.+|.. +    ++++|+.+|++
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~   78 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK   78 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence            577888888875  78999999999999999999999999999874  688999999999998 7    89999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHh----cCCCCcHHHHHHHHH
Q 024712          158 YLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPT--VPLYHLAYADVLYT----LGGVDNILLAKKYYA  227 (263)
Q Consensus       158 ~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~----~g~~~~~~~A~~~~~  227 (263)
                      ++  .+.++.+++.+|.+|..    .+++++|+.+|+++++..|.  ++.++..||.+|..    .++   +++|+.+|+
T Consensus        79 A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~~  153 (212)
T 3rjv_A           79 AV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED---DVKASEYFK  153 (212)
T ss_dssp             HH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC---HHHHHHHHH
T ss_pred             HH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC---HHHHHHHHH
Confidence            95  46889999999999988    89999999999999999883  58999999999999    677   999999999


Q ss_pred             HhhccCCCcchhHHHhHHHHHhh
Q 024712          228 STIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       228 ~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      ++++. |+ +..+.+.|..++..
T Consensus       154 ~A~~~-~~-~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          154 GSSSL-SR-TGYAEYWAGMMFQQ  174 (212)
T ss_dssp             HHHHT-SC-TTHHHHHHHHHHHH
T ss_pred             HHHHc-CC-CHHHHHHHHHHHHc
Confidence            99998 43 55567777666543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.72  E-value=2.6e-14  Score=120.86  Aligned_cols=173  Identities=14%  Similarity=0.022  Sum_probs=138.0

Q ss_pred             hHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCCCCHHH
Q 024712           63 VWTLYEQVSIAAMD----CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVL  134 (263)
Q Consensus        63 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~  134 (263)
                      .+.++..++..+..    .+++++|+..|+++.+.  .++.+...+|.++..    .+++++|+.+|+++.+.  .++.+
T Consensus       218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a  293 (490)
T 2xm6_A          218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDG  293 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHH
Confidence            45567777888776    77888888888888764  456778888888888    78888899999888764  56788


Q ss_pred             HHHHHHHHHHc-----CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024712          135 HKRRVAIAKAQ-----GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAY  206 (263)
Q Consensus       135 ~~~l~~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l  206 (263)
                      +..+|.++...     +++++|+.+|+++++.  .++.+++.+|.+|...|   ++++|+.+|+++++.  .++.++..+
T Consensus       294 ~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L  369 (490)
T 2xm6_A          294 QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNL  369 (490)
T ss_dssp             HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            88889888887     8899999999988875  56788889999988765   888999999999876  578889999


Q ss_pred             HHHHHh----cCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          207 ADVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       207 a~~~~~----~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                      |.+|..    .++   +++|+.+|+++++..   +..+++.+..++.
T Consensus       370 g~~y~~g~g~~~~---~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~  410 (490)
T 2xm6_A          370 GNALLQGKGVKKD---EQQAAIWMRKAAEQG---LSAAQVQLGEIYY  410 (490)
T ss_dssp             HHHHHHTSSSCCC---HHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCC---HHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence            999988    677   999999999998864   3455555555544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.71  E-value=1e-16  Score=115.40  Aligned_cols=116  Identities=16%  Similarity=0.049  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 024712           99 RVGRLEGILLEAKGLWAEAEKAYSSLLED------------------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE  160 (263)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  160 (263)
                      ..+...|..++..|+|++|+..|.+++..                  +|.+..++.++|.++...|++++|+..+++++.
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            34445555555555555555555555554                  455566777777777777777777777777777


Q ss_pred             hcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcC
Q 024712          161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-LYHLAYADVLYTLG  214 (263)
Q Consensus       161 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g  214 (263)
                      ++|.++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....+
T Consensus        92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA  146 (162)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777776 55555655554443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.71  E-value=1.3e-16  Score=125.36  Aligned_cols=144  Identities=13%  Similarity=-0.006  Sum_probs=125.1

Q ss_pred             CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 024712           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE  174 (263)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~  174 (263)
                      |.++..+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|++..+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccHHHHHHHHHHHHhhCCCCH-----HH--------------------------HHHHHHHHHhcCCCCcHHHHH
Q 024712          175 IYVSLQMYKQAAFCYEELILSQPTVP-----LY--------------------------HLAYADVLYTLGGVDNILLAK  223 (263)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~~-----~~--------------------------~~~la~~~~~~g~~~~~~~A~  223 (263)
                      ++...|++++|+..|++++.++|+++     .+                          ...++.+  ..|+   +++|+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~---~~~A~  155 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAE---REREL  155 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHH---HHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHH---HHHHH
Confidence            99999999999999999999988652     11                          1122222  2567   89999


Q ss_pred             HHHHHhhccCCCcchhHHHhH
Q 024712          224 KYYASTIDLTGGKNTKALFGI  244 (263)
Q Consensus       224 ~~~~~al~~~~~~~~~~~~~l  244 (263)
                      +.|+++++++|+ +.....++
T Consensus       156 ~~~~~al~~~p~-~~~~~~~l  175 (281)
T 2c2l_A          156 EECQRNHEGHED-DGHIRAQQ  175 (281)
T ss_dssp             TTTSGGGTTTSC-HHHHTHHH
T ss_pred             HHHHhhhccccc-hhhhhhHH
Confidence            999999999996 54444444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.71  E-value=1.3e-15  Score=103.86  Aligned_cols=118  Identities=19%  Similarity=0.090  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  142 (263)
                      ....+..+|..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (263)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  180 (263)
                      ...|++++|+..+++++..+|.++.++..+|.++...|
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999887654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.71  E-value=3.7e-17  Score=115.29  Aligned_cols=102  Identities=14%  Similarity=0.055  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCChhHHHHHHHHHHHh-----
Q 024712           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------DPV-----LHKRRVAIAKAQGNFPTAIEWLNKYLET-----  161 (263)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----  161 (263)
                      ..+...|..++..|+|++|+..|++++..+|+       +..     +|.++|.++..+|++++|+..+++++++     
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            34556666666666666666666666666666       222     5556666666666666666666666655     


Q ss_pred             --cCCCHHHH----HHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 024712          162 --FMADHDAW----RELAEIYVSLQMYKQAAFCYEELILSQPTVP  200 (263)
Q Consensus       162 --~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  200 (263)
                        +|++..+|    +++|.++..+|++++|+.+|+++++++|++.
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence              55555555    5555555555555555555555555555543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.71  E-value=1.7e-16  Score=118.13  Aligned_cols=159  Identities=14%  Similarity=0.126  Sum_probs=130.2

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHcCC
Q 024712           74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE------DNPLDPVLHKRRVAIAKAQGN  147 (263)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~  147 (263)
                      ++..|++++|...++.+....+....++..+|.++...|++++|+..+++++.      ..|....++..+|.++...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            35679999999966655553337788999999999999999999999999998      334445788999999999999


Q ss_pred             hhHHHHHHHHHHHh---cCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--CCH----HHHHHHHHHHHhcC
Q 024712          148 FPTAIEWLNKYLET---FMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TVP----LYHLAYADVLYTLG  214 (263)
Q Consensus       148 ~~~A~~~~~~~l~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~~~~la~~~~~~g  214 (263)
                      +++|+..+++++..   .+++    ..++..+|.++...|++++|+.++++++...+  .++    .++..+|.++...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99999999999988   4433    45688999999999999999999999997643  222    34688999999999


Q ss_pred             CCCcHHHHHHHHHHhhccCCC
Q 024712          215 GVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       215 ~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +   +++|..++++++++...
T Consensus       162 ~---~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          162 N---LLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             C---HHHHHHHHHHHHHHHHH
T ss_pred             C---HHHHHHHHHHHHHHHHH
Confidence            9   99999999999988553

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.71  E-value=2e-17  Score=127.93  Aligned_cols=199  Identities=10%  Similarity=-0.095  Sum_probs=167.0

Q ss_pred             hccCChhHHHHHHHHHhcCcccccccCcchHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHhCCCc---------
Q 024712           34 LKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQV-------SIAAMDCQCLDVAKDCIKVLQKQFPES---------   97 (263)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~~~~~p~~---------   97 (263)
                      ..+.+...+......++..       +|+..++|..+       +.++...+...+++..+++.+...|..         
T Consensus        17 ~~~~d~~~A~~~F~~a~~~-------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g   89 (282)
T 4f3v_A           17 MLPMSEARSLDLFTEITNY-------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG   89 (282)
T ss_dssp             HTTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred             ccCCCHHHHHHHHHHHHHh-------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence            3466677777776666554       89999999998       788888888999999999999977743         


Q ss_pred             ------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-
Q 024712           98 ------------KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-  164 (263)
Q Consensus        98 ------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-  164 (263)
                                  ..+...++.++...|+|++|.+.|..++...|.+. ..+.+|.+++..+++++|+..|+++....+. 
T Consensus        90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~  168 (282)
T 4f3v_A           90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF  168 (282)
T ss_dssp             TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred             cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence                        23455688999999999999999999999999888 9999999999999999999999988664311 


Q ss_pred             C-HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhH
Q 024712          165 D-HDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PT-VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA  240 (263)
Q Consensus       165 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~  240 (263)
                      . ..+++.+|.++..+|++++|+.+|++++...  |. .+.+.+.+|.++..+|+   .++|...|++++..+|+  ..+
T Consensus       169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr---~deA~~~l~~a~a~~P~--~~~  243 (282)
T 4f3v_A          169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN---ESAAVALLEWLQTTHPE--PKV  243 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSCC--HHH
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCc--HHH
Confidence            1 3589999999999999999999999998654  55 56789999999999999   99999999999999995  444


Q ss_pred             HHhHH
Q 024712          241 LFGIC  245 (263)
Q Consensus       241 ~~~l~  245 (263)
                      ...|.
T Consensus       244 ~~aL~  248 (282)
T 4f3v_A          244 AAALK  248 (282)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            44443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.71  E-value=4.6e-16  Score=115.76  Aligned_cols=132  Identities=10%  Similarity=-0.070  Sum_probs=117.4

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHcCcHHHHHHHHHHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK----------------RVGRLEGILLEAKGLWAEAEKAYSSLL  125 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~~~~  125 (263)
                      .....+..+|..++..|++++|+..|++++...|.++                .++..+|.++...|++++|+..+++++
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4566788899999999999999999999999999877                899999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHH-HHHHHHH
Q 024712          126 EDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA-FCYEELI  193 (263)
Q Consensus       126 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al  193 (263)
                      ..+|.+..++..+|.++...|++++|+..|+++++++|.+..++..++.++...++..++. ..|...+
T Consensus       116 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          116 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999888877 4444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.71  E-value=2e-16  Score=108.29  Aligned_cols=99  Identities=12%  Similarity=-0.058  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (263)
                      .++.+|..+...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHhhccCCC
Q 024712          214 GGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       214 g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      |+   +++|+..|+++++++|+
T Consensus        99 g~---~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           99 HN---ANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HH---HHHHHHHHHHHHC----
T ss_pred             CC---HHHHHHHHHHHHHhCcC
Confidence            99   99999999999999986

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=6.8e-16  Score=108.81  Aligned_cols=114  Identities=22%  Similarity=0.177  Sum_probs=62.1

Q ss_pred             CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 024712           96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL  172 (263)
Q Consensus        96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  172 (263)
                      .+...+..+|..+...|++++|+..|++++..+|++   ..++..+|.++...|++++|+..+++++..+|.++.+++.+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  105 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR  105 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence            344444555555555555555555555555555544   44555555555555555555555555555555555555555


Q ss_pred             HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712          173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV  209 (263)
Q Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (263)
                      |.++...|++++|+.+|++++..+|++..++..++.+
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            5555555555555555555555555555555554444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.70  E-value=1.5e-16  Score=112.09  Aligned_cols=112  Identities=15%  Similarity=0.103  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHhcccHHHHHHHHHHHHhh----
Q 024712          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-------DHD-----AWRELAEIYVSLQMYKQAAFCYEELILS----  195 (263)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~----  195 (263)
                      ...+...|..++..|++++|+..|+++++++|+       +..     +|.++|.++..+|+|++|+.+|.+++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            456788999999999999999999999999999       544     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712          196 ---QPTVPLYH----LAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV  247 (263)
Q Consensus       196 ---~p~~~~~~----~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~  247 (263)
                         +|+++.+|    +++|.++..+|+   +++|+..|+++++++|+ +....-++..+
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~-d~~~~~~~~~~  145 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEE-RKGETPGKERM  145 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH-CCSCCTTHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence               99999999    999999999999   99999999999999996 55444444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.70  E-value=2e-15  Score=101.87  Aligned_cols=114  Identities=14%  Similarity=0.030  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  142 (263)
                      ....+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (263)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  176 (263)
                      ...|++++|+..++++++.+|.++.++..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999999999999999888775

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.69  E-value=1.6e-15  Score=104.47  Aligned_cols=111  Identities=13%  Similarity=0.012  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHH
Q 024712          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAE  174 (263)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~  174 (263)
                      ++.+|..+...|++++|+..|++++..+|+++   .++..+|.++...|++++|+..+++++..+|++   +.+++.+|.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            45566666666666666666666666666665   566666666666666666666666666666666   666666666


Q ss_pred             HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024712          175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  211 (263)
Q Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (263)
                      ++...|++++|+..|++++...|+++.+......+..
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            6666666666666666666666666655544444433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.69  E-value=1.2e-17  Score=140.56  Aligned_cols=134  Identities=13%  Similarity=0.068  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  178 (263)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  178 (263)
                      ..+..+|..+...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++.+|.++.+++.+|.++..
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   86 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34455677777888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHhcCCCCcHHHHHHHHH-----------HhhccCCC
Q 024712          179 LQMYKQAAFCYEELILSQPTVPLYHLAYADV--LYTLGGVDNILLAKKYYA-----------STIDLTGG  235 (263)
Q Consensus       179 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~~~~A~~~~~-----------~al~~~~~  235 (263)
                      +|++++|+..|+++++++|++..++..++.+  +...|+   +++|+..++           +++.++|.
T Consensus        87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1           87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH---HCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHhccccccchhHhhhhhhhcccccc
Confidence            8888888888888888888888888888877  777788   888888888           77777765

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.69  E-value=7e-16  Score=110.99  Aligned_cols=122  Identities=16%  Similarity=-0.031  Sum_probs=111.1

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------------------FPESKRVGRLEGILLEAKGLWAEAEKAYSS  123 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  123 (263)
                      .....+...|..++..|++++|+..|.+++..                  .|.+..++..+|.++...|++++|+..+++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            35677888999999999999999999999998                  677778999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcccHH
Q 024712          124 LLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-DAWRELAEIYVSLQMYK  183 (263)
Q Consensus       124 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~  183 (263)
                      ++..+|+++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....++..
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998 66777777776655443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.68  E-value=1.9e-14  Score=120.47  Aligned_cols=173  Identities=11%  Similarity=-0.024  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712           65 TLYEQVSIAAMDCQ---CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK----GLWAEAEKAYSSLLEDNPLDPVLHKR  137 (263)
Q Consensus        65 ~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~  137 (263)
                      .++..+|.++...|   ++++|+..|+++.+..|..+..++.+|.+|...    +++++|+.+|+++.   |.++.+++.
T Consensus       177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~  253 (452)
T 3e4b_A          177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS  253 (452)
T ss_dssp             THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence            37888999999999   999999999999999999888889999999765    79999999999998   889999999


Q ss_pred             HHHH-H--HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712          138 RVAI-A--KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-----MYKQAAFCYEELILSQPTVPLYHLAYADV  209 (263)
Q Consensus       138 l~~~-~--~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (263)
                      +|.+ +  ...+++++|+.+|+++.+.  .++.+++.+|.+|. .|     ++++|+.+|+++.   |.++.++.++|.+
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~  327 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQI  327 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence            9998 4  4688999999999999854  58999999999998 55     9999999999998   8899999999998


Q ss_pred             HHhc-CCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          210 LYTL-GGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       210 ~~~~-g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                      |..- |-..++++|+.+|+++.+..   +..+.+.|..++.
T Consensus       328 y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          328 YRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFS  365 (452)
T ss_dssp             HHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHH
T ss_pred             HHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHH
Confidence            8872 11223999999999998863   4455666666554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.68  E-value=4.4e-16  Score=104.25  Aligned_cols=105  Identities=18%  Similarity=0.139  Sum_probs=70.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHH
Q 024712          128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLA  205 (263)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~  205 (263)
                      +|++..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+++++++..|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            45555666666666666666666666666666666666666666666666666666666666666666666  6666666


Q ss_pred             HHHHHHhc-CCCCcHHHHHHHHHHhhccCCC
Q 024712          206 YADVLYTL-GGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       206 la~~~~~~-g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +|.++... |+   +++|+.++++++...|+
T Consensus        82 l~~~~~~~~~~---~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           82 KADALRYIEGK---EVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHTTCSSC---SHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHhCC---HHHHHHHHHHHhhcccC
Confidence            66666666 66   66666666666666664

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.68  E-value=5.8e-17  Score=130.66  Aligned_cols=152  Identities=11%  Similarity=-0.038  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  143 (263)
                      ...+..+|..++..|++++|+..|++++...|++..        +...+++.++...+.         ..++.++|.++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~~~  241 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence            344445555555555555555555555555554331        112233333332221         148899999999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-hcCCCCcHHHH
Q 024712          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY-TLGGVDNILLA  222 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~~~~A  222 (263)
                      ..|++++|+..++++++.+|++..+++.+|.++..+|++++|+..|+++++++|+++.++..++.+.. ..+.   .+++
T Consensus       242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~---~~~a  318 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL---YQKQ  318 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998844 4456   7889


Q ss_pred             HHHHHHhhccCCC
Q 024712          223 KKYYASTIDLTGG  235 (263)
Q Consensus       223 ~~~~~~al~~~~~  235 (263)
                      ...|.+++...|.
T Consensus       319 ~~~~~~~l~~~p~  331 (338)
T 2if4_A          319 KEMYKGIFKGKDE  331 (338)
T ss_dssp             -------------
T ss_pred             HHHHHHhhCCCCC
Confidence            9999999999886

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.68  E-value=6.4e-16  Score=103.45  Aligned_cols=107  Identities=13%  Similarity=0.164  Sum_probs=103.3

Q ss_pred             CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHH
Q 024712           94 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRE  171 (263)
Q Consensus        94 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~  171 (263)
                      +|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            58888899999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHhc-ccHHHHHHHHHHHHhhCCCCH
Q 024712          172 LAEIYVSL-QMYKQAAFCYEELILSQPTVP  200 (263)
Q Consensus       172 la~~~~~~-g~~~~A~~~~~~al~~~p~~~  200 (263)
                      +|.++... |++++|+.++++++...|.++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999999 999999999999999999764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=3.3e-15  Score=105.20  Aligned_cols=121  Identities=13%  Similarity=-0.002  Sum_probs=113.4

Q ss_pred             ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHH
Q 024712           58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL  134 (263)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  134 (263)
                      ...|.....+..+|..++..|++++|+..|+++++..|++   ..++..+|.++...|++++|+..+++++..+|.++.+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence            3456788899999999999999999999999999999987   8899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  178 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  178 (263)
                      +..+|.++...|++++|+..+++++..+|++..++..++.+...
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999888877543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.68  E-value=1.3e-15  Score=104.90  Aligned_cols=117  Identities=17%  Similarity=0.155  Sum_probs=82.4

Q ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HHHH
Q 024712           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAW  169 (263)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~  169 (263)
                      .+..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+       +.++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            345566677777777777777777777777777777777777777777777777777777777776665       6677


Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712          170 RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (263)
Q Consensus       170 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (263)
                      +.+|.++...|++++|+.+|++++...| ++.....++.+....+
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            7777777777777777777777777776 4666666666555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.67  E-value=3.2e-17  Score=138.08  Aligned_cols=137  Identities=14%  Similarity=-0.005  Sum_probs=122.6

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  142 (263)
                      ....+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   84 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   84 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34445567778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH--HHhcccHHHHHHHHH-----------HHHhhCCCC
Q 024712          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEI--YVSLQMYKQAAFCYE-----------ELILSQPTV  199 (263)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~  199 (263)
                      ..+|++++|+..++++++.+|++..++..++.+  +...|++++|+..++           +++.+.|..
T Consensus        85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            999999999999999999999999999999988  888999999999999           888777654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.66  E-value=2e-15  Score=126.54  Aligned_cols=134  Identities=9%  Similarity=-0.075  Sum_probs=120.3

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---------------KRVGRLEGILLEAKGLWAEAEKAYSSL  124 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~  124 (263)
                      .|.....+..+|..++..|++++|+..|+++++..|.+               ..++..+|.++...|++++|+..|+++
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            45667789999999999999999999999999999987               689999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHH-HHHHH
Q 024712          125 LEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC-YEELI  193 (263)
Q Consensus       125 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al  193 (263)
                      +..+|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...+++++|... |.+++
T Consensus       344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988753 44443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.66  E-value=6.3e-15  Score=101.48  Aligned_cols=116  Identities=13%  Similarity=0.021  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 024712           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRV  139 (263)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~  139 (263)
                      .+..+|..++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.++..+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            456789999999999999999999999999888   799999999999999999999999999999999   88899999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM  181 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  181 (263)
                      .++...|++++|+..+++++..+|+++.+......+....++
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            999999999999999999999999998887766665544443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.66  E-value=1.1e-15  Score=121.62  Aligned_cols=169  Identities=12%  Similarity=0.074  Sum_probs=130.8

Q ss_pred             cCChHHHHHHHHHHHHhCC--------Cc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------HHHHHHHH
Q 024712           77 CQCLDVAKDCIKVLQKQFP--------ES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRV  139 (263)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p--------~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~  139 (263)
                      .|++++|..+++++.+..+        +.   ...+...|.++...|++++|+..|.+++...+..      ..++..+|
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg   83 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG   83 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455556666655554322        10   1133445778999999999999999999875432      35788999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYA  207 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la  207 (263)
                      .++...|++++|+.+|++++++.+..      ..++..+|.+|.. |++++|+.+|++++.+.|..      ..++.++|
T Consensus        84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg  162 (307)
T 2ifu_A           84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS  162 (307)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            99999999999999999999986432      4678899999998 99999999999999987643      46789999


Q ss_pred             HHHHhcCCCCcHHHHHHHHHHhhccCCCc-c----hhHHHhHHHHHh
Q 024712          208 DVLYTLGGVDNILLAKKYYASTIDLTGGK-N----TKALFGICLVMF  249 (263)
Q Consensus       208 ~~~~~~g~~~~~~~A~~~~~~al~~~~~~-~----~~~~~~l~~~~~  249 (263)
                      .++...|+   +++|+.+|++++.+.|.. .    ...+.+++.++.
T Consensus       163 ~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~  206 (307)
T 2ifu_A          163 RLLVRQQK---FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL  206 (307)
T ss_dssp             HHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCC---HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence            99999999   999999999999986641 1    235555555554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.65  E-value=5.5e-14  Score=117.67  Aligned_cols=178  Identities=13%  Similarity=0.041  Sum_probs=145.5

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC---cHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ-FPESKRVGRLEGILLEAKG---LWAEAEKAYSSLLEDNPLDPVLHKRR  138 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l  138 (263)
                      .+.+...+|..+...+.++++.......... .+.++.+++.+|.++...|   ++++|+.+|+++.+..|.....++.+
T Consensus       140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~L  219 (452)
T 3e4b_A          140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSV  219 (452)
T ss_dssp             CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3556777889998888666555543333322 1344559999999999999   99999999999999999999988999


Q ss_pred             HHHHHHc----CChhHHHHHHHHHHHhcCCCHHHHHHHHHH-H--HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024712          139 VAIAKAQ----GNFPTAIEWLNKYLETFMADHDAWRELAEI-Y--VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  211 (263)
Q Consensus       139 ~~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (263)
                      |.+|...    +++++|+.+|+++.   |.++.+++.+|.+ +  ...+++++|+.+|+++.+.  .++.++..+|.+|.
T Consensus       220 g~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          220 ARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            9999765    79999999999998   8999999999999 4  4689999999999999865  48999999999998


Q ss_pred             hcC--CCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          212 TLG--GVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       212 ~~g--~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                       .|  -..++++|+.+|+++.   ++ ++.+.+.|..++..
T Consensus       295 -~G~g~~~d~~~A~~~~~~Aa---~g-~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          295 -EGKWVPADAKAAEAHFEKAV---GR-EVAADYYLGQIYRR  330 (452)
T ss_dssp             -HCSSSCCCHHHHHHHHHTTT---TT-CHHHHHHHHHHHHT
T ss_pred             -cCCCCCCCHHHHHHHHHHHh---CC-CHHHHHHHHHHHHC
Confidence             55  1112999999999999   54 77888877777654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.65  E-value=2.6e-16  Score=126.82  Aligned_cols=103  Identities=16%  Similarity=0.086  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH-H
Q 024712           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY-V  177 (263)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~  177 (263)
                      .++..+|.++...|++++|+..+++++..+|++..+++++|.++...|++++|+..|+++++++|++..++..++.+. .
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            478899999999999999999999999999999999999999999999999999999999999999999999999884 4


Q ss_pred             hcccHHHHHHHHHHHHhhCCCCHH
Q 024712          178 SLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       178 ~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                      ..+..+++...|.+++...|.++.
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCC
Confidence            567788999999999999997753

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.65  E-value=1.7e-15  Score=106.52  Aligned_cols=91  Identities=16%  Similarity=0.157  Sum_probs=59.8

Q ss_pred             cCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712          111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN----------FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (263)
Q Consensus       111 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  180 (263)
                      .+.|++|+..++++++++|+++.++.++|.++...++          +++|+..|+++++++|++..+|+.+|.+|..+|
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            3455555555555555555555555555555555544          347777777777777777777777777777664


Q ss_pred             -----------cHHHHHHHHHHHHhhCCCCHH
Q 024712          181 -----------MYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       181 -----------~~~~A~~~~~~al~~~p~~~~  201 (263)
                                 ++++|+.+|+++++++|++..
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence                       677777777777777776643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.65  E-value=5.7e-15  Score=101.55  Aligned_cols=119  Identities=13%  Similarity=0.037  Sum_probs=109.5

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC-------HHH
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-------PVL  134 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~  134 (263)
                      +....+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|.+       ..+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            4567788999999999999999999999999999999999999999999999999999999999998877       889


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM  181 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  181 (263)
                      +..+|.++...|++++|+..++++++..| ++..+..++.+....++
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998 68888888887765543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.64  E-value=1.4e-14  Score=118.05  Aligned_cols=168  Identities=15%  Similarity=0.017  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH------
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-----RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------  132 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------  132 (263)
                      ..+...++..+...|++++|+..+++++...|...     .++..+|.++...|++++|...+++++...|...      
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            45566788889999999999999999999887542     2567889999999999999999999998754332      


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-----
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETF--------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-----  199 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----  199 (263)
                      .++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|..++++++...+..     
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  173 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  173 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence            346789999999999999999999999875        3345677889999999999999999999999987753     


Q ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          200 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       200 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      ..++..+|.++...|+   +++|..++++++.+.+
T Consensus       174 ~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          174 LQCLAMLIQCSLARGD---LDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHh
Confidence            3578899999999999   9999999999987743

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.64  E-value=3.4e-15  Score=121.64  Aligned_cols=123  Identities=16%  Similarity=0.052  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 024712           99 RVGRLEGILLEAKGLWAEAEKAYSSLLE----------------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF  162 (263)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~----------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  162 (263)
                      ..+..+|..++..|++++|+..|++++.                .+|.+..++.++|.++..+|++++|+..++++++.+
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            3455667777777777777777777776                667777888888888888888888888888888888


Q ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHH
Q 024712          163 MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK  224 (263)
Q Consensus       163 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~  224 (263)
                      |.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++   ++++.+
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~---~~~a~k  362 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA---QKDKEK  362 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHH
Confidence            88888888888888888888888888888888888888888888888888887   766654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.63  E-value=6.1e-16  Score=105.14  Aligned_cols=93  Identities=15%  Similarity=0.057  Sum_probs=61.3

Q ss_pred             cCcHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHH
Q 024712          111 KGLWAEAEKAYSSLLED---NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF  187 (263)
Q Consensus       111 ~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~  187 (263)
                      .|++++|+..|+++++.   +|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            46666677777777766   465666666777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhhCCCCHHHH
Q 024712          188 CYEELILSQPTVPLYH  203 (263)
Q Consensus       188 ~~~~al~~~p~~~~~~  203 (263)
                      .+++++...|+++.+.
T Consensus        83 ~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHhCCCcHHHH
Confidence            7777777766666543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.62  E-value=1.4e-14  Score=117.94  Aligned_cols=125  Identities=15%  Similarity=0.055  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQK----------------QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED  127 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  127 (263)
                      ...+..+|..++..|++++|+..|+++++                ..|.+..++..+|.++...|++++|+.+++++++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            45577899999999999999999999998                67778899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHH
Q 024712          128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC  188 (263)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~  188 (263)
                      +|++..+++.+|.++...|++++|+..|+++++++|++..++..++.++...++++++...
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999887653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.62  E-value=3.4e-15  Score=104.99  Aligned_cols=103  Identities=15%  Similarity=0.157  Sum_probs=93.1

Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 024712          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY----------KQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (263)
                      +.+.+++|+..++++++++|+++++|+++|.++...+++          ++|+..|+++++++|+++.+++++|.+|...
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            456789999999999999999999999999999999875          5999999999999999999999999999988


Q ss_pred             C-----------CCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          214 G-----------GVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       214 g-----------~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      |           +   +++|+.+|+++++++|+ +......+-++-..
T Consensus        94 g~l~P~~~~a~g~---~~eA~~~~~kAl~l~P~-~~~y~~al~~~~ka  137 (158)
T 1zu2_A           94 AFLTPDETEAKHN---FDLATQFFQQAVDEQPD-NTHYLKSLEMTAKA  137 (158)
T ss_dssp             HHHCCCHHHHHHH---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTH
T ss_pred             cccCcchhhhhcc---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhC
Confidence            5           7   99999999999999997 77777777666554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.61  E-value=1.1e-13  Score=108.32  Aligned_cols=164  Identities=10%  Similarity=-0.065  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----CHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP--ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL----DPVLHKR  137 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~  137 (263)
                      ...+..+|.++...|++++|++.+.+.+...|  ++..+....+.++..+|+.+.|.+.++++...+|+    +-.+...
T Consensus       100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~  179 (310)
T 3mv2_B          100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN  179 (310)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence            34456789999999999999999999988887  78899999999999999999999999999998883    2233334


Q ss_pred             H--HHHHHHcC--ChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHhh----------CCCCHH
Q 024712          138 R--VAIAKAQG--NFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILS----------QPTVPL  201 (263)
Q Consensus       138 l--~~~~~~~g--~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~  201 (263)
                      +  +.+....|  ++.+|...|+++.+..|+  ++..+++   ++..+|++++|...++.+++.          +|+++.
T Consensus       180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~  256 (310)
T 3mv2_B          180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT  256 (310)
T ss_dssp             HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence            4  44466556  899999999999888886  2333333   889999999999999987776          488999


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       202 ~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ++.++..+...+|+     +|.+++.++.+.+|+
T Consensus       257 ~LaN~i~l~~~lgk-----~a~~l~~qL~~~~P~  285 (310)
T 3mv2_B          257 FLANQITLALMQGL-----DTEDLTNQLVKLDHE  285 (310)
T ss_dssp             HHHHHHHHHHHTTC-----TTHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhCh-----HHHHHHHHHHHhCCC
Confidence            99899888888887     678999999999996

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.61  E-value=1.2e-13  Score=112.55  Aligned_cols=196  Identities=11%  Similarity=-0.056  Sum_probs=151.1

Q ss_pred             hccCChhHHHHHHHHHhcCcccccccCc-chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHH
Q 024712           34 LKVRRPDKVLRHGLSILNDPKKRSALGP-DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGI  106 (263)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~  106 (263)
                      ....+.+.+.......+...  . ..++ ....++..++..+...|++++|...+++++...|..      ..++..+|.
T Consensus        25 ~~~g~~~~A~~~~~~al~~~--~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           25 INDGNPDEAERLAKLALEEL--P-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHTC--C-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHcC--C-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            34556777777776666541  1 1111 133467788999999999999999999999876532      234678999


Q ss_pred             HHHHcCcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-----HHHHHHHH
Q 024712          107 LLEAKGLWAEAEKAYSSLLEDN--------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-----HDAWRELA  173 (263)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la  173 (263)
                      ++...|++++|+..+++++...        |....++..+|.++...|++++|...+++++...|..     ..++..+|
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  181 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  181 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence            9999999999999999999864        2334577889999999999999999999999987653     46788999


Q ss_pred             HHHHhcccHHHHHHHHHHHHhhCC--CCHHHHH-----HHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          174 EIYVSLQMYKQAAFCYEELILSQP--TVPLYHL-----AYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~-----~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .++...|++++|..++++++.+.+  ..+..+.     .++.++...|+   +++|...+.+++...|.
T Consensus       182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~~~  247 (373)
T 1hz4_A          182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD---KAAAANWLRHTAKPEFA  247 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHSCCCCCT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC---HHHHHHHHHhCCCCCCC
Confidence            999999999999999999987633  2222211     34556889999   99999999999987764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.61  E-value=1.4e-15  Score=117.59  Aligned_cols=178  Identities=10%  Similarity=-0.106  Sum_probs=148.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHHcCcHHHHHHHHHHHHhcCCCCH--------
Q 024712           68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLE-------GILLEAKGLWAEAEKAYSSLLEDNPLDP--------  132 (263)
Q Consensus        68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~~~~~~p~~~--------  132 (263)
                      +..|.-+ ..+++..|...|.+++..+|+.+.+|..+       +.++...++..+++..+++.+.+.|...        
T Consensus        11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g   89 (282)
T 4f3v_A           11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG   89 (282)
T ss_dssp             HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred             HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence            3345554 68999999999999999999999999999       8999999999999999999999776543        


Q ss_pred             -------------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712          133 -------------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  199 (263)
Q Consensus       133 -------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  199 (263)
                                   .+...++.++...|++++|...|..++...|.+. ..+.+|.+++..+++++|+..|+++....+..
T Consensus        90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~  168 (282)
T 4f3v_A           90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF  168 (282)
T ss_dssp             TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred             cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence                         3445588999999999999999999999999888 99999999999999999999999887653221


Q ss_pred             --HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC--CCcchhHHHhHHHHHhh
Q 024712          200 --PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT--GGKNTKALFGICLVMFV  250 (263)
Q Consensus       200 --~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~--~~~~~~~~~~l~~~~~~  250 (263)
                        ..+++.+|.++..+|+   +++|+.+|++++...  |.....+++.+++|...
T Consensus       169 ~~~~a~~~LG~al~~LG~---~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~  220 (282)
T 4f3v_A          169 LAGAAGVAHGVAAANLAL---FTEAERRLTEANDSPAGEACARAIAWYLAMARRS  220 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence              3489999999999999   999999999998654  42133344444444433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.59  E-value=2.8e-15  Score=101.82  Aligned_cols=96  Identities=13%  Similarity=0.006  Sum_probs=86.8

Q ss_pred             HcCChHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 024712           76 DCQCLDVAKDCIKVLQKQ---FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI  152 (263)
Q Consensus        76 ~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  152 (263)
                      ..|++++|+..|+++++.   +|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            358999999999999999   58889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHH
Q 024712          153 EWLNKYLETFMADHDAWRE  171 (263)
Q Consensus       153 ~~~~~~l~~~p~~~~~~~~  171 (263)
                      ..+++++...|+++.+...
T Consensus        82 ~~~~~al~~~p~~~~~~~~  100 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSY  100 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHT
T ss_pred             HHHHHHHHhCCCcHHHHHH
Confidence            9999999999999876543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.59  E-value=1.6e-13  Score=108.31  Aligned_cols=153  Identities=14%  Similarity=0.057  Sum_probs=125.5

Q ss_pred             CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---
Q 024712           95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---  165 (263)
Q Consensus        95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---  165 (263)
                      |.....+...+..+...|++++|+..+++++...|...      ..+..+|.++...|++++|+..+++++...+..   
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            34445566788899999999999999999999877654      245678888999999999999999999875544   


Q ss_pred             ---HHHHHHHHHHHHhcccHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          166 ---HDAWRELAEIYVSLQMYKQAAFCYEELI---LSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       166 ---~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                         ..++..+|.+|...|++++|+.+|++++   +..|++.    .++.++|.+|...|+   +++|+.+|++++++.+.
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~---y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR---YEESLYQVNKAIEISCR  228 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh---HHHHHHHHHHHHHHHHh
Confidence               5688999999999999999999999999   5566643    588999999999999   99999999999987542


Q ss_pred             -c----chhHHHhHHHHHhh
Q 024712          236 -K----NTKALFGICLVMFV  250 (263)
Q Consensus       236 -~----~~~~~~~l~~~~~~  250 (263)
                       .    ...+++.++.++..
T Consensus       229 ~~~~~~~~~~~~~lg~~y~~  248 (293)
T 2qfc_A          229 INSMALIGQLYYQRGECLRK  248 (293)
T ss_dssp             TTBCSSHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHH
Confidence             1    14556666666554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.58  E-value=2e-14  Score=102.41  Aligned_cols=132  Identities=16%  Similarity=0.011  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HH
Q 024712          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HD  167 (263)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~  167 (263)
                      ++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+..+++++...+..      ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            34445555555555555555555555443211      1245556666666666666666666666554332      34


Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          168 AWRELAEIYVSLQMYKQAAFCYEELILSQPT------VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      ++..+|.++...|++++|+.++++++...+.      ...++..+|.++...|+   +++|..++++++++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN---HDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHH
Confidence            5666667777777777777777766654321      13456667777777777   7777777777766543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.58  E-value=7e-14  Score=110.33  Aligned_cols=157  Identities=11%  Similarity=0.071  Sum_probs=123.5

Q ss_pred             ccCChhHHHHHHHHHhcCcccccccCcch---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHH
Q 024712           35 KVRRPDKVLRHGLSILNDPKKRSALGPDV---WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEG  105 (263)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a  105 (263)
                      ..++.+.+......++..    ....|+.   ...+..++..+...+++++|+..+++++...+..      ..++..+|
T Consensus        87 ~~~~y~~a~~~~~~~l~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg  162 (293)
T 3u3w_A           87 KQKRYKEIYNKVWNELKK----EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA  162 (293)
T ss_dssp             HTTCHHHHHHHHHHHHTT----CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHhcc----ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            345566666666665544    1122222   2344458888888899999999999999965432      33688999


Q ss_pred             HHHHHcCcHHHHHHHHHHHHhc---C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHH
Q 024712          106 ILLEAKGLWAEAEKAYSSLLED---N----PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWREL  172 (263)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~~~~~---~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l  172 (263)
                      .+|...|++++|+.+|++++..   .    +....++.++|.++..+|++++|+.++++++++.+..      +.+++.+
T Consensus       163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  242 (293)
T 3u3w_A          163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR  242 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            9999999999999999999952   1    2223588999999999999999999999999986544      7899999


Q ss_pred             HHHHHhcc-cHHHHHHHHHHHHhh
Q 024712          173 AEIYVSLQ-MYKQAAFCYEELILS  195 (263)
Q Consensus       173 a~~~~~~g-~~~~A~~~~~~al~~  195 (263)
                      |.++..+| .+++|+.+|++++.+
T Consensus       243 g~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          243 GECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHH
Confidence            99999999 579999999999865

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.57  E-value=5.2e-14  Score=100.20  Aligned_cols=137  Identities=13%  Similarity=-0.071  Sum_probs=117.5

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC----
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----  131 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----  131 (263)
                      ....++..+|..+...|++++|+..++++++..+..      ..++..+|.++...|++++|+..+++++...+..    
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   86 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            356678889999999999999999999999876532      2478889999999999999999999999865432    


Q ss_pred             --HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712          132 --PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (263)
Q Consensus       132 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  198 (263)
                        ..++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+.++++++++...
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence              4578899999999999999999999999874322      567889999999999999999999999987543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.56  E-value=8.9e-14  Score=103.20  Aligned_cols=136  Identities=17%  Similarity=0.095  Sum_probs=117.3

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---CCCC-
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---NPLD-  131 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~-  131 (263)
                      ....++..+|.++...|++++|+..+++++..      .|....++..+|.++...|++++|+..+++++..   .+++ 
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            57788999999999999999999999999993      3456678899999999999999999999999987   4433 


Q ss_pred             ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712          132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--D----HDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  197 (263)
                         ..++..+|.++...|++++|+..+++++...+.  +    ..++..+|.++...|++++|+.++++++.+..
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence               357889999999999999999999999976432  2    23468899999999999999999999997643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.53  E-value=1.6e-12  Score=101.91  Aligned_cols=161  Identities=16%  Similarity=0.073  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 024712           83 AKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE  160 (263)
Q Consensus        83 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  160 (263)
                      |+..+++.+...+.+......+|.++...|++++|+.++.+.+..+|  .+..++...+.++...|+.+.|.+.+++..+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            78889888877656666778999999999999999999999999887  7889999999999999999999999999999


Q ss_pred             hcCC----CHHHHHHH--HHHHHhcc--cHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712          161 TFMA----DHDAWREL--AEIYVSLQ--MYKQAAFCYEELILSQPT--VPLYHLAYADVLYTLGGVDNILLAKKYYASTI  230 (263)
Q Consensus       161 ~~p~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al  230 (263)
                      .+|+    +-.+...+  |.+.+..|  ++++|..+|+++....|+  .+..+++   ++..+|+   +++|...++.++
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~---~~eAe~~L~~l~  238 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRN---IAEAQGIVELLL  238 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTC---HHHHHHHHHHHH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCC---HHHHHHHHHHHH
Confidence            9883    22334444  44466666  999999999999888886  2333333   8999999   999999999887


Q ss_pred             cc----------CCCcchhHHHhHHHHHhh
Q 024712          231 DL----------TGGKNTKALFGICLVMFV  250 (263)
Q Consensus       231 ~~----------~~~~~~~~~~~l~~~~~~  250 (263)
                      +.          +|+ ++.++.+++.+...
T Consensus       239 ~~~p~~~~k~~~~p~-~~~~LaN~i~l~~~  267 (310)
T 3mv2_B          239 SDYYSVEQKENAVLY-KPTFLANQITLALM  267 (310)
T ss_dssp             SHHHHTTTCHHHHSS-HHHHHHHHHHHHHH
T ss_pred             HhcccccccccCCCC-CHHHHHHHHHHHHH
Confidence            76          364 77888777666544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.49  E-value=4.7e-12  Score=115.25  Aligned_cols=171  Identities=11%  Similarity=0.005  Sum_probs=137.7

Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-----------
Q 024712           62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-----------  130 (263)
Q Consensus        62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-----------  130 (263)
                      +.+.+|.++|.++...|++++|+..|.++     +++..+...+.++...|+|++|+++|..+.+..++           
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence            55788899999999999999999999774     78889999999999999999999999887655432           


Q ss_pred             ----------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 024712          131 ----------------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  194 (263)
Q Consensus       131 ----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  194 (263)
                                      +...+..+|..++..|++++|+.+|.++        ..|..+|.++...|++++|++++.++..
T Consensus      1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred             HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence                            2234567888999999999999999986        4788899999999999999999988854


Q ss_pred             hCC-------------------------CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          195 SQP-------------------------TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       195 ~~p-------------------------~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                      ..+                         .+++.+..++..|...|.   +++|+..++.++.++|. ....+..+..++.
T Consensus      1250 ~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~---feEAI~LlE~aL~Lera-H~gmftELaiLya 1325 (1630)
T 1xi4_A         1250 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY---FEELITMLEAALGLERA-HMGMFTELAILYS 1325 (1630)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccChh-HhHHHHHHHHHHH
Confidence            433                         134455677788889999   99999999999999875 5555544444433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.48  E-value=8.5e-13  Score=109.48  Aligned_cols=167  Identities=14%  Similarity=0.026  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Q 024712           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-----------------RVGRLEGILLEAKGLWAEAEKAYSSLLEDN  128 (263)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  128 (263)
                      .....|..+...|++++|++.|..+++..|...                 .++..+|.+|...|++++|++++.+++...
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            344567888899999999999999999887432                 357889999999999999999999998865


Q ss_pred             CCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712          129 PLDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (263)
Q Consensus       129 p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  196 (263)
                      +...      .+...++.++...|++++|+..+++++...+.      ...++..+|.++...|+|++|+.++++++...
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~  165 (434)
T 4b4t_Q           86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF  165 (434)
T ss_dssp             HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            5432      34566788888899999999999999976432      26788999999999999999999999998652


Q ss_pred             ------CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          197 ------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       197 ------p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                            +....++..+|.+|...|+   +++|...|++++...+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          166 KKLDDKPSLVDVHLLESKVYHKLRN---LAKSKASLTAARTAANS  207 (434)
T ss_dssp             TTSSCSTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             HhcccchhHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHhhc
Confidence                  2235688999999999999   99999999999877543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.47  E-value=9.1e-13  Score=88.88  Aligned_cols=81  Identities=14%  Similarity=0.086  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712          117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (263)
Q Consensus       117 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  196 (263)
                      |+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.+..+|+.+|.++...|++++|+..|++++.+.
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   83 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            45555555555555555555555555555555555555555555555555555555555555555555555555555554


Q ss_pred             C
Q 024712          197 P  197 (263)
Q Consensus       197 p  197 (263)
                      |
T Consensus        84 ~   84 (115)
T 2kat_A           84 Q   84 (115)
T ss_dssp             H
T ss_pred             c
Confidence            4

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.47  E-value=1e-11  Score=108.17  Aligned_cols=173  Identities=16%  Similarity=0.025  Sum_probs=153.0

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----------
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAK-DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----------  127 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------  127 (263)
                      .|..+.+|...+......|+.++|+ .+|++++...|.+..++..++.+....|+++.|..+|++++..           
T Consensus       339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~  418 (679)
T 4e6h_A          339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED  418 (679)
T ss_dssp             TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            5667788888888888899999997 9999999999999999999999999999999999999999975           


Q ss_pred             CCC-----------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHh
Q 024712          128 NPL-----------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-FMADHDAWRELAEIYVSLQ-MYKQAAFCYEELIL  194 (263)
Q Consensus       128 ~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~  194 (263)
                      .|.           ...+|..++.+..+.|..+.|...|.++++. .+....+|...|.+....+ +++.|..+|+.+++
T Consensus       419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk  498 (679)
T 4e6h_A          419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK  498 (679)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            253           2457888899888999999999999999988 5566778888888777765 48999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          195 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       195 ~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ..|+++..+...+......|+   .+.|...|++++...|+
T Consensus       499 ~~p~~~~~w~~y~~fe~~~~~---~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          499 YFATDGEYINKYLDFLIYVNE---ESQVKSLFESSIDKISD  536 (679)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHTTTSSS
T ss_pred             HCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhcCC
Confidence            999999999999999999999   99999999999998873

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.47  E-value=8e-14  Score=93.20  Aligned_cols=94  Identities=12%  Similarity=0.057  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHH
Q 024712          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLA  205 (263)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~  205 (263)
                      ...+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++.++|++      ..++..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            45677788888888888888888888888888888888888888888888888888888888888887      777778


Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHH
Q 024712          206 YADVLYTLGGVDNILLAKKYYAS  228 (263)
Q Consensus       206 la~~~~~~g~~~~~~~A~~~~~~  228 (263)
                      +|.++...|+   ++.|+..+++
T Consensus        84 ~~~~~~~~~~---~~~a~~~~~~  103 (111)
T 2l6j_A           84 LELAQGAVGS---VQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHC---CCCCSSSSSS
T ss_pred             HHHHHHHHHh---HhhhHhHHHH
Confidence            8888888777   6666555443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.46  E-value=1.1e-12  Score=84.20  Aligned_cols=82  Identities=20%  Similarity=0.215  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024712          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY  211 (263)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (263)
                      ..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.++++++..+|+++.++..+|.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            44555666666666666666666666666666666666666666666666666666666666666666666666666655


Q ss_pred             hc
Q 024712          212 TL  213 (263)
Q Consensus       212 ~~  213 (263)
                      ..
T Consensus        89 ~~   90 (91)
T 1na3_A           89 KQ   90 (91)
T ss_dssp             HH
T ss_pred             hc
Confidence            44

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.45  E-value=1.5e-12  Score=87.74  Aligned_cols=100  Identities=15%  Similarity=0.084  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 024712           81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE  160 (263)
Q Consensus        81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  160 (263)
                      .+|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCC--CHHHHHHHHHHHHhcc
Q 024712          161 TFMA--DHDAWRELAEIYVSLQ  180 (263)
Q Consensus       161 ~~p~--~~~~~~~la~~~~~~g  180 (263)
                      ..|.  +......+...+...+
T Consensus        82 ~~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           82 AAQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHhc
Confidence            9874  3444445544444433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.44  E-value=8.1e-14  Score=93.18  Aligned_cols=94  Identities=17%  Similarity=0.169  Sum_probs=67.2

Q ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHH
Q 024712           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWR  170 (263)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~  170 (263)
                      ++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            345666777777777777777777777777777777777777777777777777777777777777777      66777


Q ss_pred             HHHHHHHhcccHHHHHHHHH
Q 024712          171 ELAEIYVSLQMYKQAAFCYE  190 (263)
Q Consensus       171 ~la~~~~~~g~~~~A~~~~~  190 (263)
                      .+|.++...|+++.|+..++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHH
Confidence            77777777776666655443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.43  E-value=2.9e-12  Score=82.27  Aligned_cols=85  Identities=22%  Similarity=0.154  Sum_probs=64.0

Q ss_pred             CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 024712           96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI  175 (263)
Q Consensus        96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~  175 (263)
                      .++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHhcc
Q 024712          176 YVSLQ  180 (263)
Q Consensus       176 ~~~~g  180 (263)
                      +...|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            66543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.39  E-value=1.7e-10  Score=105.23  Aligned_cols=144  Identities=17%  Similarity=0.142  Sum_probs=116.4

Q ss_pred             HHHHHHHcCChHHHHHHHHHHH--------------------Hh--CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQ--------------------KQ--FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED  127 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~--------------------~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  127 (263)
                      +|.++...|.+++|..+|+++-                    +.  ..+.+.+|..+|.++...|++++|+..|.++   
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            4666667777777766654431                    11  1366788999999999999999999999775   


Q ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---------------------------CHHHHHHHHHHHHhcc
Q 024712          128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA---------------------------DHDAWRELAEIYVSLQ  180 (263)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~---------------------------~~~~~~~la~~~~~~g  180 (263)
                        +++..+..++.++...|++++|+++|..+.+..+.                           +...+..+|..++..|
T Consensus      1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A         1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence              77888999999999999999999999887755432                           2334667899999999


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712          181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (263)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a  229 (263)
                      +|++|..+|.++        ..|..+|.++.++|+   +++|++.++++
T Consensus      1210 ~YeeA~~~Y~kA--------~ny~rLA~tLvkLge---~q~AIEaarKA 1247 (1630)
T 1xi4_A         1210 MYDAAKLLYNNV--------SNFGRLASTLVHLGE---YQAAVDGARKA 1247 (1630)
T ss_pred             CHHHHHHHHHhh--------hHHHHHHHHHHHhCC---HHHHHHHHHHh
Confidence            999999999886        478899999999999   99999999998

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.37  E-value=4.7e-12  Score=83.21  Aligned_cols=69  Identities=19%  Similarity=0.182  Sum_probs=33.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712          128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (263)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  196 (263)
                      +|+++.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++.+.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            344444455555555555555555555555555555554455555555555555555555555544443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.37  E-value=6.2e-12  Score=82.61  Aligned_cols=71  Identities=18%  Similarity=0.061  Sum_probs=43.8

Q ss_pred             cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          162 FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       162 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|+   +++|+..|++++++.|.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR---TDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhhc
Confidence            456666666666666666666666666666666666666666666666666666   66666666666665543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.36  E-value=2.7e-12  Score=104.97  Aligned_cols=166  Identities=13%  Similarity=0.029  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  143 (263)
                      ...+..++..+...|++++|+.+++.+.+..++ +.+...++.+|.+.|++.++.++++     .| +...|..+|..++
T Consensus        61 ~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~  133 (449)
T 1b89_A           61 PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCY  133 (449)
T ss_dssp             -------------------------------------------------CHHHHTTTTT-----CC--------------
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHH
Confidence            335555555666666666666666655543222 3334444444444444444443332     12 2235555555555


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--------------------------
Q 024712          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP--------------------------  197 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------------------------  197 (263)
                      ..|++++|+.+|.++        ..|..+|.++..+|++++|++++.++.  +|                          
T Consensus       134 ~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L  203 (449)
T 1b89_A          134 DEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI  203 (449)
T ss_dssp             ---CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT
T ss_pred             HcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            555555555555544        234555555555555555555555551  11                          


Q ss_pred             -CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          198 -TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       198 -~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                       .++.-...+..+|...|.   +++|+.+++.++.+++. ....+.++.+++.+
T Consensus       204 ~~~ad~l~~lv~~Yek~G~---~eEai~lLe~aL~le~a-h~~~ftel~il~~k  253 (449)
T 1b89_A          204 VVHADELEELINYYQDRGY---FEELITMLEAALGLERA-HMGMFTELAILYSK  253 (449)
T ss_dssp             TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTSTTC-CHHHHHHHHHHHHT
T ss_pred             HhCHhhHHHHHHHHHHCCC---HHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHh
Confidence             122223345678888999   99999999999999875 77777777777655

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.35  E-value=3.1e-12  Score=83.74  Aligned_cols=88  Identities=18%  Similarity=0.259  Sum_probs=52.1

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHD-AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      ..|.++...|++++|+..++++++.+|.++. +++.+|.++...|++++|+..|++++.++|+++.++..        +.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~   76 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM   76 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence            4455556666666666666666666666666 66666666666666666666666666666666555433        23


Q ss_pred             CCcHHHHHHHHHHhhccCCC
Q 024712          216 VDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       216 ~~~~~~A~~~~~~al~~~~~  235 (263)
                         +.++...|.+++..+|+
T Consensus        77 ---~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           77 ---VMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             ---HHHHHHHHCCTTHHHHC
T ss_pred             ---HHHHHHHHHHHhccCcc
Confidence               55555566555555553

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.34  E-value=3.9e-12  Score=83.20  Aligned_cols=91  Identities=13%  Similarity=0.025  Sum_probs=81.5

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  180 (263)
                      +..|..+...|++++|+..++++++.+|.++. ++..+|.++...|++++|+..|+++++.+|++..++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            56788999999999999999999999999999 99999999999999999999999999999999888744        6


Q ss_pred             cHHHHHHHHHHHHhhCCCCH
Q 024712          181 MYKQAAFCYEELILSQPTVP  200 (263)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~  200 (263)
                      .+.+++..|++++..+|+++
T Consensus        76 ~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHhccCcccc
Confidence            78889999988888877653

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.33  E-value=3e-10  Score=99.00  Aligned_cols=173  Identities=12%  Similarity=-0.012  Sum_probs=150.1

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----------CC-----------cHHHHHHHHHHHHHcCcHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-----------PE-----------SKRVGRLEGILLEAKGLWAEA  117 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----------p~-----------~~~~~~~~a~~~~~~~~~~~A  117 (263)
                      .|....++...+......|+++.|..+|++++...           |.           ...+|...+.+..+.|..+.|
T Consensus       374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~A  453 (679)
T 4e6h_A          374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS  453 (679)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHH
Confidence            55667778888888889999999999999999752           42           345788889999999999999


Q ss_pred             HHHHHHHHhc-CCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712          118 EKAYSSLLED-NPLDPVLHKRRVAIAKAQG-NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       118 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  195 (263)
                      ..+|.+++.. .+....++...+.+....+ +++.|...|+++++..|+++..|...+......|+.+.|..+|++++..
T Consensus       454 R~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~  533 (679)
T 4e6h_A          454 RKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK  533 (679)
T ss_dssp             HHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            9999999987 4455677777787777765 4899999999999999999999999999999999999999999999998


Q ss_pred             CCC---CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          196 QPT---VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       196 ~p~---~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .|.   ...+|......-...|+   .+.+.+.+.++.+..|+
T Consensus       534 ~~~~~~~~~lw~~~~~fE~~~G~---~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          534 ISDSHLLKMIFQKVIFFESKVGS---LNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             SSSTTHHHHHHHHHHHHHHHTCC---SHHHHHHHHHHHHHSTT
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Confidence            883   45678888888889999   99999999999999997

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.33  E-value=3.7e-11  Score=99.55  Aligned_cols=166  Identities=10%  Similarity=0.014  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------CCC
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK------RVGRLEGILLEAKGLWAEAEKAYSSLLEDN------PLD  131 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------p~~  131 (263)
                      ..++..+|..+...|++++|...+.+++...+...      .+...++.++...|++++|+.++++++...      +..
T Consensus        55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  134 (434)
T 4b4t_Q           55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK  134 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence            34577899999999999999999999988765322      345567888888899999999999998753      223


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhc------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC---CC---
Q 024712          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETF------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP---TV---  199 (263)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~---  199 (263)
                      ..++..+|.++...|++++|+..+++++...      |....++..+|.+|...|++++|..++++++...+   ..   
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  214 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT  214 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence            4688899999999999999999999998763      33367889999999999999999999999987643   32   


Q ss_pred             -HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          200 -PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       200 -~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                       ...+..+|.++...|+   +.+|..+|.+++..
T Consensus       215 ~~~~~~~~g~~~~~~~~---y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          215 VAELDLMSGILHCEDKD---YKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHHHTTSSSC---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHH
Confidence             2356778888888999   99999999999865

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.31  E-value=8.8e-11  Score=81.86  Aligned_cols=109  Identities=18%  Similarity=0.095  Sum_probs=63.2

Q ss_pred             cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cccHHHHHHH
Q 024712          113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFC  188 (263)
Q Consensus       113 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~  188 (263)
                      ++++|+.+|+++.+..+.  .+.  +|.+|...+.+++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+
T Consensus        10 d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            455566666666554422  222  555555555555666666666554  455666666666655    5566666666


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHh----cCCCCcHHHHHHHHHHhhcc
Q 024712          189 YEELILSQPTVPLYHLAYADVLYT----LGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       189 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~~~~A~~~~~~al~~  232 (263)
                      |+++.+.  .++.++.++|.+|..    .++   +++|+.+|+++.+.
T Consensus        84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d---~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           84 YSKACGL--NDQDGCLILGYKQYAGKGVVKN---EKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHT
T ss_pred             HHHHHcC--CCHHHHHHHHHHHHCCCCCCcC---HHHHHHHHHHHHHC
Confidence            6666554  455666666666665    455   66666666666655

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.30  E-value=3.4e-11  Score=98.54  Aligned_cols=168  Identities=11%  Similarity=-0.020  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  143 (263)
                      ...|..+|..++..|.+++|..+|.++        ..+..+|.++.+.|+|++|++.++++     .++.+|...+.++.
T Consensus       122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv  188 (449)
T 1b89_A          122 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV  188 (449)
T ss_dssp             ---------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH
Confidence            358889999999999999999999976        46788999999999999999999999     46889999999999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 024712          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK  223 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~  223 (263)
                      ..|+++.|..+... +..+|   +-...++.+|...|++++|+.++++++.+++.....+..+|.+|.+-+ +++..+++
T Consensus       189 ~~~ef~lA~~~~l~-L~~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~-p~k~~ehl  263 (449)
T 1b89_A          189 DGKEFRLAQMCGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHL  263 (449)
T ss_dssp             HTTCHHHHHHTTTT-TTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             HcCcHHHHHHHHHH-HHhCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence            99999999777765 33444   445568899999999999999999999999999999999988887653 12277788


Q ss_pred             HHHHHhhccCC-----CcchhHHHhHHHHHhh
Q 024712          224 KYYASTIDLTG-----GKNTKALFGICLVMFV  250 (263)
Q Consensus       224 ~~~~~al~~~~-----~~~~~~~~~l~~~~~~  250 (263)
                      +.|...+.+.|     . +...|..+...+..
T Consensus       264 ~~~~~~ini~k~~~~~~-~~~~w~e~~~ly~~  294 (449)
T 1b89_A          264 ELFWSRVNIPKVLRAAE-QAHLWAELVFLYDK  294 (449)
T ss_dssp             HHHSTTSCHHHHHHHHH-TTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHH-HHHHHHHHHHHHHh
Confidence            88887777765     3 56666666666544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.29  E-value=1.3e-10  Score=81.07  Aligned_cols=120  Identities=11%  Similarity=-0.133  Sum_probs=104.9

Q ss_pred             CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHH
Q 024712           78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPTAIE  153 (263)
Q Consensus        78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~  153 (263)
                      +++++|+..|+++.+....  .+.  +|.+|...+..++|+.+|+++.+.  .++.+.+.+|.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            5789999999999987643  333  999999999999999999999986  688999999999998    899999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024712          154 WLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYA  207 (263)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la  207 (263)
                      +|+++.+.  .++.+++.||.+|..    .+++++|+.+|+++.+..  ++.+...++
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            99999876  789999999999999    899999999999999874  455655554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.29  E-value=3.7e-10  Score=90.13  Aligned_cols=145  Identities=13%  Similarity=0.016  Sum_probs=110.4

Q ss_pred             HHHHHHhCCCcHHHH--HHHHHHHHHcC---cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---C-ChhHHHHHHHH
Q 024712           87 IKVLQKQFPESKRVG--RLEGILLEAKG---LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ---G-NFPTAIEWLNK  157 (263)
Q Consensus        87 ~~~~~~~~p~~~~~~--~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~  157 (263)
                      ..++....|.++.++  +..|..+...+   .+.+|+.+|+++++.+|++..++..++.++...   + ........+..
T Consensus       183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~  262 (372)
T 3ly7_A          183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT  262 (372)
T ss_dssp             HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence            334556667766554  45666666554   457899999999999999998888777777532   1 11111111221


Q ss_pred             ------HHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712          158 ------YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  231 (263)
Q Consensus       158 ------~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~  231 (263)
                            ++..+|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++...|+   +++|+..|.+++.
T Consensus       263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~---~~eA~e~~~~Alr  338 (372)
T 3ly7_A          263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM---NREAADAYLTAFN  338 (372)
T ss_dssp             HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC---HHHHHHHHHHHHh
Confidence                  22567999999999999998899999999999999999974 6778899999999999   9999999999999


Q ss_pred             cCCC
Q 024712          232 LTGG  235 (263)
Q Consensus       232 ~~~~  235 (263)
                      ++|.
T Consensus       339 L~P~  342 (372)
T 3ly7_A          339 LRPG  342 (372)
T ss_dssp             HSCS
T ss_pred             cCCC
Confidence            9996

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.25  E-value=4.3e-11  Score=100.52  Aligned_cols=125  Identities=10%  Similarity=-0.002  Sum_probs=103.7

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCC---HHH
Q 024712          105 GILLEAKGLWAEAEKAYSSLLED-----NPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD---HDA  168 (263)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~  168 (263)
                      +..+...|+|++|+..++++++.     .|+++   .++.++|.+|..+|++++|+.++++++++     .|++   ...
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  395 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA  395 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            44466789999999999999874     45555   57889999999999999999999999975     3444   556


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          169 WRELAEIYVSLQMYKQAAFCYEELILS-----QPTVPL---YHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       169 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      +.+||.+|..+|++++|+.+|++++.+     .|++|.   ....++.++..++.   +++|...|.++.+.
T Consensus       396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~---~~~ae~~~~~~~~~  464 (490)
T 3n71_A          396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM---FRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            889999999999999999999999964     566655   45688999999999   99999999998654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.24  E-value=1.1e-10  Score=98.15  Aligned_cols=127  Identities=11%  Similarity=0.033  Sum_probs=106.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhC-----CC---cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----CCCCH---H
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQKQF-----PE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDP---V  133 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~-----p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~  133 (263)
                      .+..+..+|++++|+.+++++++..     |+   ....+..+|.+|..+|+|++|+.++++++..     .|+++   .
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  394 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM  394 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            3445668899999999999999852     33   4456788999999999999999999999974     45665   4


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQ  196 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  196 (263)
                      .+.++|.+|..+|++++|+..+++++++     .|++   ......++.++..++.+++|...|.++.+..
T Consensus       395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999975     4555   4556789999999999999999999886543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.22  E-value=6.6e-10  Score=88.70  Aligned_cols=140  Identities=13%  Similarity=0.062  Sum_probs=108.5

Q ss_pred             CcchHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcH-------HHHH-HHHH--HHHh
Q 024712           60 GPDVWTLYEQVSIAAMDCQ---CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW-------AEAE-KAYS--SLLE  126 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~-------~~A~-~~~~--~~~~  126 (263)
                      +++-+..+. .|..++..+   ++.+|+.+|+++++.+|+.+.++..++.++.....+       ..++ ..++  .++.
T Consensus       193 ~~~Aydl~L-ra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~  271 (372)
T 3ly7_A          193 RGALLTNFY-QAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP  271 (372)
T ss_dssp             SGGGHHHHH-HHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred             CHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence            344444444 355555544   458999999999999999999998888877532111       1111 1222  2335


Q ss_pred             cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712          127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                      .+|.++.++..++..+...|++++|+..+++++.++|+ ..+|..+|.++...|++++|++.|.+++.++|..+.
T Consensus       272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            67999999999999999999999999999999999974 778889999999999999999999999999998754

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.17  E-value=2e-09  Score=82.70  Aligned_cols=106  Identities=15%  Similarity=0.116  Sum_probs=90.3

Q ss_pred             cCCCCHHHHHHHHHHHHH-----cCC------hhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhc-----ccHHHHHHH
Q 024712          127 DNPLDPVLHKRRVAIAKA-----QGN------FPTAIEWLNKYLETFMA--DHDAWRELAEIYVSL-----QMYKQAAFC  188 (263)
Q Consensus       127 ~~p~~~~~~~~l~~~~~~-----~g~------~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~  188 (263)
                      .+|+++..++..|.+...     .|.      ...|...++++++++|+  +..+|..+|.+|...     |+.++|..+
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            356667766666665543     132      56899999999999999  677999999999995     999999999


Q ss_pred             HHHHHhhCCCC-HHHHHHHHHHHHhc-CCCCcHHHHHHHHHHhhccCCC
Q 024712          189 YEELILSQPTV-PLYHLAYADVLYTL-GGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       189 ~~~al~~~p~~-~~~~~~la~~~~~~-g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      |+++++++|+. ..++..+|+.+... |+   ++.|..++++++..+|.
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd---~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNN---RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTC---HHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHcCCCC
Confidence            99999999975 99999999999884 99   99999999999999875

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.16  E-value=6.2e-10  Score=71.70  Aligned_cols=72  Identities=11%  Similarity=-0.049  Sum_probs=51.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712          128 NPLDPVLHKRRVAIAKAQGN---FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV  199 (263)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  199 (263)
                      +|+++..+..+|.+++..++   .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|++++..+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            46677777777777765544   5677777777777777777777777777777777777777777777777664

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.05  E-value=1.8e-09  Score=69.55  Aligned_cols=71  Identities=10%  Similarity=-0.036  Sum_probs=67.2

Q ss_pred             cCCCHHHHHHHHHHHHhccc---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          162 FMADHDAWRELAEIYVSLQM---YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       162 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      +|.++.++..+|.+++..++   .++|...+++++..+|+++.+...+|..++..|+   +++|+.+|+++++.+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~---y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR---FQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence            68999999999999976665   7999999999999999999999999999999999   99999999999999986

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.02  E-value=5.2e-09  Score=72.78  Aligned_cols=91  Identities=15%  Similarity=0.040  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHhcccHHHHHHH
Q 024712          114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAIEWLNKYLETF-M-ADHDAWRELAEIYVSLQMYKQAAFC  188 (263)
Q Consensus       114 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~  188 (263)
                      ...+.+.|.+.+..+|.+..+.+++|.++.+.+   +..+++..++.+++.+ | ...++++.+|..+++.|+|++|..+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            345555666666666667777777777777766   4557777777777776 5 4567777777777777777777777


Q ss_pred             HHHHHhhCCCCHHHHH
Q 024712          189 YEELILSQPTVPLYHL  204 (263)
Q Consensus       189 ~~~al~~~p~~~~~~~  204 (263)
                      ++++++.+|++..+..
T Consensus        94 ~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             HHHHHHHCTTCHHHHH
T ss_pred             HHHHHhcCCCCHHHHH
Confidence            7777777777765543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.92  E-value=2.2e-08  Score=69.67  Aligned_cols=94  Identities=11%  Similarity=-0.103  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---cHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCChhHHHHH
Q 024712           80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG---LWAEAEKAYSSLLEDN-P-LDPVLHKRRVAIAKAQGNFPTAIEW  154 (263)
Q Consensus        80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~  154 (263)
                      ...+.+.|.+.....|.+..+.+.+|.++.+.+   +.++++.+++.++..+ | .+.++++.+|..+++.|+|++|..+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            345666777777777888899999999999988   6779999999999988 6 5578999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHH
Q 024712          155 LNKYLETFMADHDAWRELA  173 (263)
Q Consensus       155 ~~~~l~~~p~~~~~~~~la  173 (263)
                      ++++++.+|++..+....-
T Consensus        94 ~~~lL~ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKELER  112 (152)
T ss_dssp             HHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHH
Confidence            9999999999887765433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.90  E-value=3.1e-08  Score=65.21  Aligned_cols=74  Identities=9%  Similarity=0.049  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETF-------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY  206 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  206 (263)
                      -.+.+|..++..|++..|+.+|+.+++..       +..+.++..+|.+++.+|+++.|+..+++++++.|++..+..++
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~   86 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence            33455555555555555555555555542       22345555666666666666666666666666666665554444


Q ss_pred             H
Q 024712          207 A  207 (263)
Q Consensus       207 a  207 (263)
                      +
T Consensus        87 ~   87 (104)
T 2v5f_A           87 K   87 (104)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.89  E-value=1.8e-08  Score=77.37  Aligned_cols=107  Identities=11%  Similarity=-0.065  Sum_probs=92.6

Q ss_pred             hCCCcHHHHHHHHHHHHH---c--C------cHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CChhHHHHH
Q 024712           93 QFPESKRVGRLEGILLEA---K--G------LWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQ-----GNFPTAIEW  154 (263)
Q Consensus        93 ~~p~~~~~~~~~a~~~~~---~--~------~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~-----g~~~~A~~~  154 (263)
                      .+|+++..++..|.+...   .  |      ....|...++++++++|+  +..+|..+|.+|...     |+.++|..+
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            456778888877776643   1  2      457899999999999999  567999999999995     999999999


Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHh-cccHHHHHHHHHHHHhhCCCC
Q 024712          155 LNKYLETFMAD-HDAWRELAEIYVS-LQMYKQAAFCYEELILSQPTV  199 (263)
Q Consensus       155 ~~~~l~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~  199 (263)
                      |+++++++|+. ...++..|..+.. .|+++.|..++++++..+|..
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999975 9999999999988 499999999999999988873

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.89  E-value=4.1e-07  Score=76.76  Aligned_cols=160  Identities=9%  Similarity=-0.025  Sum_probs=77.2

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHh----------cCCC
Q 024712           61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE----------DNPL  130 (263)
Q Consensus        61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----------~~p~  130 (263)
                      |..+.+|...+......|+.+.|..++++++.. |.+...+...+.... .++   ....+.....          ..+.
T Consensus       210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e-~~~---~~~~l~~~~~~~~~~~~~~~~~~~  284 (493)
T 2uy1_A          210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMD-EEA---VYGDLKRKYSMGEAESAEKVFSKE  284 (493)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT-CTH---HHHHHHHHTC----------CHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc-hhH---HHHHHHHHHHhhccchhhhhcccc
Confidence            445667777777778888899999999999888 877655554433310 000   0000000000          0000


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712          131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQPTVPLYHLAYADV  209 (263)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~  209 (263)
                      ...+|...+......+..+.|...|+++ ...+.....|...|.+.+..+ +.+.|..+|+.+++..|+++..+...++.
T Consensus       285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~  363 (493)
T 2uy1_A          285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            1123333344443444455555555555 222223334444444433333 35555555555555555544444444444


Q ss_pred             HHhcCCCCcHHHHHHHHHHh
Q 024712          210 LYTLGGVDNILLAKKYYAST  229 (263)
Q Consensus       210 ~~~~g~~~~~~~A~~~~~~a  229 (263)
                      ....|+   .+.|...|+++
T Consensus       364 e~~~~~---~~~aR~l~er~  380 (493)
T 2uy1_A          364 LLRIGD---EENARALFKRL  380 (493)
T ss_dssp             HHHHTC---HHHHHHHHHHS
T ss_pred             HHHcCC---HHHHHHHHHHH
Confidence            444455   55555555544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.86  E-value=2.5e-07  Score=78.09  Aligned_cols=146  Identities=10%  Similarity=-0.095  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 024712           81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE  160 (263)
Q Consensus        81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  160 (263)
                      .....+|++++...|..+.+|...+..+...|+.++|..+|++++.. |.+...+...+...    +.++....+.....
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~----e~~~~~~~l~~~~~  270 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM----DEEAVYGDLKRKYS  270 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT----TCTHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc----chhHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999 99887776555441    11121111111110


Q ss_pred             ----------hcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHh
Q 024712          161 ----------TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG-GVDNILLAKKYYAST  229 (263)
Q Consensus       161 ----------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~~~~A~~~~~~a  229 (263)
                                ..+....+|...+......+..+.|..+|.++ ...+.....+...|.+.+..+ +   .+.|...|+.+
T Consensus       271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d---~~~ar~ife~a  346 (493)
T 2uy1_A          271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGS---RATPYNIFSSG  346 (493)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCC---SHHHHHHHHHH
T ss_pred             hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCC---hHHHHHHHHHH
Confidence                      01122467888888888889999999999999 444445667777777777665 6   89999999999


Q ss_pred             hccCCC
Q 024712          230 IDLTGG  235 (263)
Q Consensus       230 l~~~~~  235 (263)
                      ++..|+
T Consensus       347 l~~~~~  352 (493)
T 2uy1_A          347 LLKHPD  352 (493)
T ss_dssp             HHHCTT
T ss_pred             HHHCCC
Confidence            998876

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.84  E-value=6.1e-08  Score=63.76  Aligned_cols=76  Identities=14%  Similarity=-0.038  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHH
Q 024712           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR  170 (263)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  170 (263)
                      +.-.+.+|..++..|+|..|+.+|+.++...       +....++..+|.+++.+|+++.|+..++++++..|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4455667777777777777777777777642       234567777777777777777777777777777777777766


Q ss_pred             HHH
Q 024712          171 ELA  173 (263)
Q Consensus       171 ~la  173 (263)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            655

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.84  E-value=1.9e-08  Score=83.16  Aligned_cols=94  Identities=11%  Similarity=0.113  Sum_probs=76.9

Q ss_pred             HcCcHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCC---HHHHHHHH
Q 024712          110 AKGLWAEAEKAYSSLLED-----NPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD---HDAWRELA  173 (263)
Q Consensus       110 ~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la  173 (263)
                      ..|+|++|+..++++++.     .|+++   .++.++|.+|..+|++++|+.++++++++     .|++   ...+.+||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457899999999999884     56665   46788999999999999999999999975     3444   55688999


Q ss_pred             HHHHhcccHHHHHHHHHHHHhh-----CCCCHHHH
Q 024712          174 EIYVSLQMYKQAAFCYEELILS-----QPTVPLYH  203 (263)
Q Consensus       174 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~  203 (263)
                      .+|..+|++++|+.+|++++++     .|++|.+.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            9999999999999999999865     56666543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.83  E-value=3.5e-06  Score=71.20  Aligned_cols=164  Identities=9%  Similarity=-0.104  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHc---------CcHHHHHHHHHHHHhcC-CCCHHH
Q 024712           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDN-PLDPVL  134 (263)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~-p~~~~~  134 (263)
                      ++..+...+.+.|++++|+.+|+.+.+..- -+...+..+-.++...         +..++|.++|+++.... +-+...
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            455566778899999999999999988642 2444555554555433         34789999999988754 235778


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHh
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP-TVPLYHLAYADVLYT  212 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~  212 (263)
                      +..+...+.+.|++++|...+++..+.. +-+...|..+-..|...|+.++|..+|.+..+..- -+...+..+-.++..
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            8999999999999999999999988753 33677888899999999999999999999887542 246678889999999


Q ss_pred             cCCCCcHHHHHHHHHHhhcc
Q 024712          213 LGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       213 ~g~~~~~~~A~~~~~~al~~  232 (263)
                      .|+   .++|...+++.-+.
T Consensus       188 ~g~---~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          188 TKN---ADKVYKTLQRLRDL  204 (501)
T ss_dssp             TTC---HHHHHHHHHHHHHH
T ss_pred             CCC---HHHHHHHHHHHHHh
Confidence            999   99999999987654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.79  E-value=3e-08  Score=82.11  Aligned_cols=105  Identities=10%  Similarity=0.043  Sum_probs=80.8

Q ss_pred             HHHHcCcHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCC---HHHHH
Q 024712          107 LLEAKGLWAEAEKAYSSLLED-----NPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD---HDAWR  170 (263)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~  170 (263)
                      -+...|+|++|+..++++++.     .|+++   .++.+++.+|..+|++++|+.++++++.+     .|++   ...++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            355678999999999999874     45555   46788999999999999999999999875     2444   45678


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhh-----CCCCHHH---HHHHHHHHH
Q 024712          171 ELAEIYVSLQMYKQAAFCYEELILS-----QPTVPLY---HLAYADVLY  211 (263)
Q Consensus       171 ~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~la~~~~  211 (263)
                      +||.+|..+|++++|+.+|++++.+     .|++|.+   ..+|+.+..
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA  424 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            8999999999999999999999864     5666554   344555544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.70  E-value=3.3e-08  Score=81.77  Aligned_cols=86  Identities=10%  Similarity=-0.007  Sum_probs=74.5

Q ss_pred             HcCChhHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHhh-----CCCCHH---HHHHHH
Q 024712          144 AQGNFPTAIEWLNKYLET-----FMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILS-----QPTVPL---YHLAYA  207 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~la  207 (263)
                      ..|++++|+..+++++++     .|++   ...+.++|.+|..+|+|++|+.++++++.+     .|++|.   .+.+||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            468899999999999985     3444   456789999999999999999999999965     455554   688999


Q ss_pred             HHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          208 DVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       208 ~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      .+|..+|+   +++|+.+|++++++
T Consensus       390 ~~~~~qg~---~~eA~~~~~~Al~i  411 (433)
T 3qww_A          390 RLYMGLEN---KAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHTTC---HHHHHHHHHHHHHH
T ss_pred             HHHHhccC---HHHHHHHHHHHHHH
Confidence            99999999   99999999999976

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.70  E-value=9.7e-08  Score=79.01  Aligned_cols=106  Identities=15%  Similarity=-0.049  Sum_probs=84.4

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----CCCCH---HH
Q 024712           71 SIAAMDCQCLDVAKDCIKVLQKQF-----PES---KRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDP---VL  134 (263)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~-----p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~  134 (263)
                      ...+..+|++++|+..++++++..     |++   ...+..+|.+|..+|+|++|+.++++++..     .|+++   ..
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            344567899999999999999753     344   456788999999999999999999999974     45555   47


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCCHHH---HHHHHHHH
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLET-----FMADHDA---WRELAEIY  176 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~---~~~la~~~  176 (263)
                      +.++|.+|..+|++++|+..+++++++     .|+++.+   ..+|+.+.
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  423 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD  423 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            889999999999999999999999975     4666544   34455444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.55  E-value=3.6e-06  Score=57.72  Aligned_cols=103  Identities=12%  Similarity=0.102  Sum_probs=50.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 024712          128 NPLDPVLHKRRVAIAKAQGNF------PTAIEWLNKYLETFMAD--------HDAWRELAEIYVSLQMYKQAAFCYEELI  193 (263)
Q Consensus       128 ~p~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~l~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al  193 (263)
                      .|++++.|..+.......|+.      +.-+..|++++..-|-.        ...|...|.. ...++.++|...|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            345555555555554444554      44445555555443322        2233333333 23355555555555555


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          194 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       194 ~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      .++..+..+|...|+.-...|+   ..+|.+.+.+++.+.|
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgn---l~kARkILg~AiG~~~  125 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGN---VKKSKQLLQKAVERGA  125 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTC
T ss_pred             HHhHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCC
Confidence            5544445555555555555555   5555555555555554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.52  E-value=1.5e-06  Score=58.17  Aligned_cols=85  Identities=16%  Similarity=0.033  Sum_probs=40.8

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHhc-C-CCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712          118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT---AIEWLNKYLETF-M-ADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (263)
Q Consensus       118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a  192 (263)
                      ...|.+....++.+..+.+++|.++.+..+...   ++..++..+..+ | ..-+.++.+|..+++.|+|++|..+++.+
T Consensus        21 ~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l  100 (126)
T 1nzn_A           21 EKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL  100 (126)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            333444444344444444555555544443333   455555444443 2 23344555555555555555555555555


Q ss_pred             HhhCCCCHHH
Q 024712          193 ILSQPTVPLY  202 (263)
Q Consensus       193 l~~~p~~~~~  202 (263)
                      ++..|++..+
T Consensus       101 L~~eP~n~QA  110 (126)
T 1nzn_A          101 LQTEPQNNQA  110 (126)
T ss_dssp             HHHCTTCHHH
T ss_pred             HHhCCCCHHH
Confidence            5555555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.48  E-value=4.3e-06  Score=56.02  Aligned_cols=97  Identities=10%  Similarity=-0.091  Sum_probs=80.1

Q ss_pred             cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCChhHH
Q 024712           77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE---AEKAYSSLLEDN-P-LDPVLHKRRVAIAKAQGNFPTA  151 (263)
Q Consensus        77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A  151 (263)
                      ......+...|.......+.+..+.+.+|.++........   ++.+++.++..+ | ...++++.+|..+++.|+|++|
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            3445566777777777777888999999999998876655   999999999876 5 4557899999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHH
Q 024712          152 IEWLNKYLETFMADHDAWRELA  173 (263)
Q Consensus       152 ~~~~~~~l~~~p~~~~~~~~la  173 (263)
                      ..+++.+++..|.+..+.....
T Consensus        94 ~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHH
Confidence            9999999999999988764433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.36  E-value=1.4e-05  Score=54.77  Aligned_cols=120  Identities=14%  Similarity=-0.002  Sum_probs=87.4

Q ss_pred             CCCcHHHHHHHHHHHHHcCcH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 024712           94 FPESKRVGRLEGILLEAKGLW------AEAEKAYSSLLEDNPLD--------PVLHKRRVAIAKAQGNFPTAIEWLNKYL  159 (263)
Q Consensus        94 ~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~~~~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~l  159 (263)
                      .|.+++.|..........|+.      +.-.+.|++++..-|-.        ...|..++.. ...++.++|...|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            477777777777777777777      77777778777765542        2355556644 45588999999999998


Q ss_pred             HhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          160 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       160 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      ..+...+.+|...|..-.++|+...|.+.+.+++.+.|..... ...|..-.+.|.
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~~  142 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQK  142 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTTC
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcCC
Confidence            8888888889999999999999999999999999988875443 333444444444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.32  E-value=0.00053  Score=57.90  Aligned_cols=155  Identities=11%  Similarity=-0.094  Sum_probs=117.7

Q ss_pred             ccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHhCC-CcHHHHHHH
Q 024712           35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ---------CLDVAKDCIKVLQKQFP-ESKRVGRLE  104 (263)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~~~~~p-~~~~~~~~~  104 (263)
                      +.++.+++..+...+...     ...|+. .+|..+...+...+         ..++|..+|+.+....- -+...+..+
T Consensus        38 k~G~~~~A~~lf~~M~~~-----Gv~pd~-~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l  111 (501)
T 4g26_A           38 KKGDVLEALRLYDEARRN-----GVQLSQ-YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG  111 (501)
T ss_dssp             TSCCHHHHHHHHHHHHHH-----TCCCCH-HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHc-----CCCCCH-hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            455666777776666543     234433 23444444444433         36889999999887642 356678888


Q ss_pred             HHHHHHcCcHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcccH
Q 024712          105 GILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-MADHDAWRELAEIYVSLQMY  182 (263)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~  182 (263)
                      ...+.+.|++++|..+++++.... .-+...+..+...+.+.|+.++|...+++..+.. .-+...|..+...+...|+.
T Consensus       112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~  191 (501)
T 4g26_A          112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA  191 (501)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence            899999999999999999998753 2357788899999999999999999999988753 22567788999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 024712          183 KQAAFCYEELILS  195 (263)
Q Consensus       183 ~~A~~~~~~al~~  195 (263)
                      ++|..++++..+.
T Consensus       192 d~A~~ll~~Mr~~  204 (501)
T 4g26_A          192 DKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998754

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.14  E-value=4.6e-05  Score=53.35  Aligned_cols=131  Identities=14%  Similarity=0.078  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhC---CC------cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---CCCHHH
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQF---PE------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN---PLDPVL  134 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~  134 (263)
                      +......+++.|.|+.|+-....++...   |+      ...+...+|+.++..++|..|...|++++...   +.+...
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            4445667789999999998888766643   32      12477889999999999999999999997742   222222


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024712          135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (263)
                      ...++.    ......       ... .+.+.++.+.++.|+...|++++|+..++.. ...-..+.+...||.+|
T Consensus       103 ~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          103 RPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             -------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             cccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            111110    000000       111 2445678888999999999999999887653 22234577777777765

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.00  E-value=0.00014  Score=50.97  Aligned_cols=115  Identities=13%  Similarity=-0.058  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHcCChhHHHHHHHHHHHhc---CCCHH
Q 024712          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---------VLHKRRVAIAKAQGNFPTAIEWLNKYLETF---MADHD  167 (263)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~  167 (263)
                      +++.-...+...|.|+.|+-....++....+++         .++..+|..++..|+|..|...|++++...   +....
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            344455556666777777666666554422111         255666777777777777777777766542   12221


Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712          168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (263)
Q Consensus       168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a  229 (263)
                      ....++.    ...+..       .... +.+.++.+.++.|+...|+   +++|+..++.+
T Consensus       102 ~~~~~~~----~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~---~~~Ai~~Le~I  148 (167)
T 3ffl_A          102 VRPSTGN----SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQ---DKDAIAILDGI  148 (167)
T ss_dssp             --------------------------CC-CCHHHHHHHHHHHHHHTTC---HHHHHHHHHTS
T ss_pred             ccccccc----cCCCcc-------cccc-cchHHHHHHHHHHHHHHCC---HHHHHHHHhcC
Confidence            1111100    000000       0111 3345788999999999999   99999998875

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.91  E-value=0.00078  Score=45.85  Aligned_cols=73  Identities=8%  Similarity=-0.086  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH
Q 024712          131 DPVLHKRRVAIAKAQGNF---PTAIEWLNKYLETFMA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (263)
Q Consensus       131 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  203 (263)
                      ...+.++++.++.+..+.   .+++..++..+...|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            455666666666665543   3566666666666663 345666677777777777777777777777777765543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.89  E-value=0.0003  Score=47.26  Aligned_cols=72  Identities=8%  Similarity=-0.087  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHcCCh---hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH
Q 024712          132 PVLHKRRVAIAKAQGNF---PTAIEWLNKYLETFMA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (263)
Q Consensus       132 ~~~~~~l~~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  203 (263)
                      +.+.+++|.++.+..+.   .+++..++..+...|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            45555666666555432   3466666666665552 355666666666666666666666666666666665543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.78  E-value=0.0011  Score=45.18  Aligned_cols=76  Identities=7%  Similarity=-0.107  Sum_probs=61.3

Q ss_pred             CcHHHHHHHHHHHHHcCc---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH
Q 024712           96 ESKRVGRLEGILLEAKGL---WAEAEKAYSSLLEDNPL-DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE  171 (263)
Q Consensus        96 ~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  171 (263)
                      -++.+.+.+|.++....+   ..+++.+++.++..+|. ..+.++.+|..+++.|+|++|..+.+.+++..|++..+...
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            466778888888888764   45788899998888875 44788888999999999999999999999999998776543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.00051  Score=60.36  Aligned_cols=116  Identities=17%  Similarity=0.223  Sum_probs=85.4

Q ss_pred             HcCC-hHHHHHHHHHHHHhCCCcHHHHHHHHHHH--HH-cCcHHHHHHHHHHHHhc--------CCCC----------HH
Q 024712           76 DCQC-LDVAKDCIKVLQKQFPESKRVGRLEGILL--EA-KGLWAEAEKAYSSLLED--------NPLD----------PV  133 (263)
Q Consensus        76 ~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~a~~~--~~-~~~~~~A~~~~~~~~~~--------~p~~----------~~  133 (263)
                      ..+. ++.|+.+++++...+|.....+ ..+.+.  .. ..+--+|+..+.+.++.        .+.+          ..
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  338 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD  338 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence            4555 5889999999999998654322 222222  11 23345677777776631        2232          23


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  192 (263)
                      .+...+..+...|+++-|+.+.++++...|.+...|+.|+.+|..+|+|+.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            45556778888999999999999999999999999999999999999999999877665

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.69  E-value=0.00035  Score=46.93  Aligned_cols=70  Identities=9%  Similarity=-0.010  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHH
Q 024712           65 TLYEQVSIAAMDCQC---LDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL  134 (263)
Q Consensus        65 ~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  134 (263)
                      .+-++.|.++..+.+   ..+++.+++.++...| ..-+.++.+|..+.+.|+|++|..+.+.+++..|++..+
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            333444444444332   2234444444444444 223444444555555555555555555555555544443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.0019  Score=56.73  Aligned_cols=115  Identities=12%  Similarity=-0.063  Sum_probs=87.5

Q ss_pred             cCc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--Hc-CChhHHHHHHHHHHHh--------cCCC----------HHH
Q 024712          111 KGL-WAEAEKAYSSLLEDNPLDPVLHKRRVAIAK--AQ-GNFPTAIEWLNKYLET--------FMAD----------HDA  168 (263)
Q Consensus       111 ~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~-g~~~~A~~~~~~~l~~--------~p~~----------~~~  168 (263)
                      .++ ++.|+..+++....+|.....+ ..+.+..  .. .+--+|+..+.+.++.        .+.+          ...
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            455 6889999999999988764332 2222222  22 2345688888877742        2222          345


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712          169 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (263)
Q Consensus       169 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a  229 (263)
                      +...+..+...|+|+-|+.+.++++...|.+...|..|+.+|..+|+   ++.|+-.+..+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d---~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE---YEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---HHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc---HHHHHHHHhcC
Confidence            66678888899999999999999999999999999999999999999   99999777766

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.52  E-value=0.012  Score=47.79  Aligned_cols=165  Identities=12%  Similarity=-0.013  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHH-cCcHHHHHHHHHHHHhcCCCC--H--H-
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVG-----RLEGILLEA-KGLWAEAEKAYSSLLEDNPLD--P--V-  133 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-----~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~--~--~-  133 (263)
                      .+...+|..+...|+.++-..++.......+.-+.+.     ..+-..+.. .+..+.-++++..+++.....  .  . 
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556688889999999888888776655444322222     222222222 244555566666666532222  1  1 


Q ss_pred             -HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC---CCCHH--
Q 024712          134 -LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--D----HDAWRELAEIYVSLQMYKQAAFCYEELILSQ---PTVPL--  201 (263)
Q Consensus       134 -~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~--  201 (263)
                       .-..+|.+|+..|++.+|...+.+.++....  +    .+++..-..+|...+++.++...+.++....   +.+|.  
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence             2337899999999999998888888764322  1    3455666778888899999999888887543   23333  


Q ss_pred             --HHHHHHHHHH-hcCCCCcHHHHHHHHHHhhcc
Q 024712          202 --YHLAYADVLY-TLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       202 --~~~~la~~~~-~~g~~~~~~~A~~~~~~al~~  232 (263)
                        ....-|..+. ..++   |..|..+|-.++.-
T Consensus       180 a~i~~~~Gi~~l~~~rd---yk~A~~~F~eaf~~  210 (394)
T 3txn_A          180 GALDLQSGILHAADERD---FKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHhccC---HHHHHHHHHHHHhc
Confidence              3445577777 7888   99999998888744

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.036  Score=39.39  Aligned_cols=101  Identities=17%  Similarity=-0.001  Sum_probs=73.3

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 024712           74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE  153 (263)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  153 (263)
                      .++.|+++.|.++.+.+     ++...|..+|......|+++-|..+|+++-..        ..+..+|...|+.+.-..
T Consensus        15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~k   81 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLSK   81 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHHH
Confidence            36789999999998765     57889999999999999999999999886532        345556677788766554


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712          154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (263)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  192 (263)
                      ..+.+....  +   +.....+++.+|+++++++.|.+.
T Consensus        82 la~iA~~~g--~---~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           82 MQNIAQTRE--D---FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHTT--C---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHCc--c---HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            444443322  2   223345677889999999988654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.0054  Score=50.68  Aligned_cols=98  Identities=12%  Similarity=-0.072  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC--CCCHH----HH
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PTVPL----YH  203 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~~  203 (263)
                      .++..+|..+...|+++.|...|.++.......   .+++..+..++...+++..+...+.++-...  ..++.    ..
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            466778888888888888888888877654333   5667777788888888888888888876442  22222    23


Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712          204 LAYADVLYTLGGVDNILLAKKYYASTIDLT  233 (263)
Q Consensus       204 ~~la~~~~~~g~~~~~~~A~~~~~~al~~~  233 (263)
                      ...|.++...++   |..|...|..++...
T Consensus       212 ~~~gl~~l~~r~---f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          212 TYYGIHCLAVRN---FKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHGGGGTSC---HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCh---HHHHHHHHHHHhccC
Confidence            344556666777   888888888776553

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.91  E-value=0.14  Score=42.46  Aligned_cols=170  Identities=12%  Similarity=0.028  Sum_probs=106.4

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH---HHHH-HcCcHHH--HHHHHHHHHhcCCC---
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEG---ILLE-AKGLWAE--AEKAYSSLLEDNPL---  130 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a---~~~~-~~~~~~~--A~~~~~~~~~~~p~---  130 (263)
                      .+....+...+...+...++++...+.+..+.........+...+.   .-+. .....+.  -+............   
T Consensus        52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kif  131 (445)
T 4b4t_P           52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIF  131 (445)
T ss_dssp             TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchH
Confidence            3345667777888888899998888877766655443322221111   1111 1122111  11111111111111   


Q ss_pred             ----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--CC----HHHHHHHHHHHHhcccHHHHHHHHHHHHh---hCC
Q 024712          131 ----DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--AD----HDAWRELAEIYVSLQMYKQAAFCYEELIL---SQP  197 (263)
Q Consensus       131 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p  197 (263)
                          .......++.++...|++.+|...+.....-.-  .+    .+++.....++...+++.+|...+.++..   ..+
T Consensus       132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~  211 (445)
T 4b4t_P          132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP  211 (445)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence                123456789999999999999999988764321  11    45677788889999999999999888642   233


Q ss_pred             CCHH----HHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712          198 TVPL----YHLAYADVLYTLGGVDNILLAKKYYASTIDL  232 (263)
Q Consensus       198 ~~~~----~~~~la~~~~~~g~~~~~~~A~~~~~~al~~  232 (263)
                      .++.    .+...|.++...++   |.+|..+|..++..
T Consensus       212 ~~~~lk~~~~~~~~~~~~~e~~---y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          212 KYESLKLEYYNLLVKISLHKRE---YLEVAQYLQEIYQT  247 (445)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhc
Confidence            3433    45667888888899   99999999988764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.033  Score=39.59  Aligned_cols=102  Identities=15%  Similarity=0.016  Sum_probs=68.0

Q ss_pred             HHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHH
Q 024712          107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA  186 (263)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~  186 (263)
                      .....|+++.|.+..+..     ++...|..+|......|+++-|+.+|.++-     +   +..+..+|...|+.+.-.
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D---~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----S---FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C---HHHHHHHHHHHTCHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C---HHHHHHHHHHhCCHHHHH
Confidence            456779999999887765     568899999999999999999999998763     2   233444555566665544


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712          187 FCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST  229 (263)
Q Consensus       187 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a  229 (263)
                      +.-+.+......     ..-..+++.+|+   ++++++.|.+.
T Consensus        81 kla~iA~~~g~~-----n~af~~~l~lGd---v~~~i~lL~~~  115 (177)
T 3mkq_B           81 KMQNIAQTREDF-----GSMLLNTFYNNS---TKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHTTCH-----HHHHHHHHHHTC---HHHHHHHHHHT
T ss_pred             HHHHHHHHCccH-----HHHHHHHHHcCC---HHHHHHHHHHC
Confidence            444444333221     112245566777   77777777654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.86  E-value=0.028  Score=45.73  Aligned_cols=74  Identities=15%  Similarity=0.025  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc-------cCCCcchhHH
Q 024712          169 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID-------LTGGKNTKAL  241 (263)
Q Consensus       169 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~-------~~~~~~~~~~  241 (263)
                      ...++..+...|++.+|+..+..++..+|.+-.++..+..+++..|+   ..+|+..|+++-.       +.|+.....+
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr---~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l  250 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR---QSDALGAYRRVKTTLADDLGIDPGPTLRAL  250 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            34566777788888888888888888888888888888888888888   8888877777533       3555444444


Q ss_pred             HhHH
Q 024712          242 FGIC  245 (263)
Q Consensus       242 ~~l~  245 (263)
                      +.-+
T Consensus       251 ~~~i  254 (388)
T 2ff4_A          251 NERI  254 (388)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.78  E-value=0.055  Score=48.09  Aligned_cols=78  Identities=15%  Similarity=0.057  Sum_probs=40.3

Q ss_pred             HHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH--------HHhcCCCHHHHHHHHHHHHhc
Q 024712          108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY--------LETFMADHDAWRELAEIYVSL  179 (263)
Q Consensus       108 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------l~~~p~~~~~~~~la~~~~~~  179 (263)
                      ....|++++|.+..+.     .++...|..+|..+...|+++.|+.+|.++        +.....+.+.+..++......
T Consensus       662 ~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~  736 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT  736 (814)
T ss_dssp             HHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence            3445666666554322     234555666666666666666666666553        111234444445555555555


Q ss_pred             ccHHHHHHHHH
Q 024712          180 QMYKQAAFCYE  190 (263)
Q Consensus       180 g~~~~A~~~~~  190 (263)
                      |++..|..+|.
T Consensus       737 ~~~~~A~~~~~  747 (814)
T 3mkq_A          737 GKFNLAFNAYW  747 (814)
T ss_dssp             TCHHHHHHHHH
T ss_pred             CchHHHHHHHH
Confidence            55555555443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.73  E-value=0.02  Score=40.24  Aligned_cols=120  Identities=13%  Similarity=0.002  Sum_probs=79.2

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 024712           75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW  154 (263)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  154 (263)
                      ++-.+++.++-+-.-   ..|..++....++..++-.|+|..++-.+.+     -+...+.+.-..|+...+++..|+..
T Consensus        13 ~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~   84 (242)
T 3kae_A           13 IRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKS   84 (242)
T ss_dssp             HHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344677766543322   2455556777888888888999888765432     33455666678888889999999999


Q ss_pred             HHHHHHh-----------------cCCCHHH-HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH
Q 024712          155 LNKYLET-----------------FMADHDA-WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY  202 (263)
Q Consensus       155 ~~~~l~~-----------------~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  202 (263)
                      +++.+.-                 +|.+.+. +..+|.++-..|+-++|+.++.......|-.+.+
T Consensus        85 le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v  150 (242)
T 3kae_A           85 LESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV  150 (242)
T ss_dssp             HHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence            9988832                 2334333 3456777777788888888888877777765544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.71  E-value=0.037  Score=42.07  Aligned_cols=57  Identities=16%  Similarity=0.042  Sum_probs=31.8

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC
Q 024712           75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD  131 (263)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~  131 (263)
                      ++.|++++|+..+...++..|.++.....+..++.-.|+|+.|...++-+..++|..
T Consensus         8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            445555555555555555555555555555555555555555555555555555544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.69  E-value=0.072  Score=43.30  Aligned_cols=61  Identities=16%  Similarity=0.138  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL  194 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  194 (263)
                      +...++..+...|++.+++..+..++..+|.+..+|..+..++...|+..+|+..|+++-.
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4456677888899999999999999999999999999999999999999999999887653

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.63  E-value=0.019  Score=48.20  Aligned_cols=77  Identities=14%  Similarity=0.073  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (263)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  176 (263)
                      .+..+|++......++.|..+|.++....|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            45567888888888888888888888888888888888888888888888888888887765554555555555444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.56  E-value=0.14  Score=45.52  Aligned_cols=75  Identities=19%  Similarity=0.204  Sum_probs=40.8

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM  181 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  181 (263)
                      ......+...|.+++|+...+        ++...   ..+....|++++|.+..+     ..++...|..+|..+...|+
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~  696 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN  696 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC
Confidence            344445555666666654331        12211   223345666666665543     23455666666666666666


Q ss_pred             HHHHHHHHHHH
Q 024712          182 YKQAAFCYEEL  192 (263)
Q Consensus       182 ~~~A~~~~~~a  192 (263)
                      ++.|+.+|.++
T Consensus       697 ~~~A~~~y~~~  707 (814)
T 3mkq_A          697 FKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            66666666654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.45  E-value=0.024  Score=47.58  Aligned_cols=79  Identities=14%  Similarity=0.067  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (263)
                      .+..+|.+......+..|..+|.+|..+.|++...+..||.+....|+.-+|+-+|.+++....-.+.+..++...+-.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            5567888888888899999999999999999999999999999999999999999999997766667777777666654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.35  E-value=0.088  Score=40.03  Aligned_cols=93  Identities=15%  Similarity=0.093  Sum_probs=76.1

Q ss_pred             HHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH------------------
Q 024712          107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA------------------  168 (263)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------------------  168 (263)
                      ..++.|+.++|++.+...++.+|.+......+..+++-.|+++.|...++-+.+++|.....                  
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vf   85 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   85 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            45667899999999999999999999999999999999999999999999998888775321                  


Q ss_pred             --------------HH---HHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712          169 --------------WR---ELAEIYVSLQMYKQAAFCYEELILSQPTV  199 (263)
Q Consensus       169 --------------~~---~la~~~~~~g~~~~A~~~~~~al~~~p~~  199 (263)
                                    |.   .-+......|+.++|...-.++++..|..
T Consensus        86 aG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           86 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence                          11   22444566799999999999999887654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=96.32  E-value=0.25  Score=46.15  Aligned_cols=141  Identities=10%  Similarity=-0.019  Sum_probs=99.0

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---------------------
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN---------------------  128 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------------  128 (263)
                      +...+...+.++-+..    .....|.++...+.+|.++...|++++|..+|+++-..-                     
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence            4444556677765544    334567778788999999999999999999999874310                     


Q ss_pred             --CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-CH----HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712          129 --PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-DH----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL  201 (263)
Q Consensus       129 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (263)
                        ...+..|..+..++...|.++.+++..+.+++..+. +.    ..|..+-..+...|+|++|...+...-. ...-..
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~r~~  972 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TPLKKS  972 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSSCHH
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHHHHH
Confidence              111245667778888899999999999999987543 33    2677888889999999999777754321 122345


Q ss_pred             HHHHHHHHHHhcCC
Q 024712          202 YHLAYADVLYTLGG  215 (263)
Q Consensus       202 ~~~~la~~~~~~g~  215 (263)
                      +...+-..++..|.
T Consensus       973 cLr~LV~~lce~~~  986 (1139)
T 4fhn_B          973 CLLDFVNQLTKQGK  986 (1139)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhCCC
Confidence            55555555555555

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.31  E-value=0.16  Score=46.29  Aligned_cols=100  Identities=10%  Similarity=-0.089  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-CCCHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ----FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKR  137 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~  137 (263)
                      ....|..+...+.+.|+.++|..+|..+.+.    ..-+...+..+-..+.+.|++++|.++|+++.+.. .-+...|..
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            3445777888899999999999999776532    23356678888889999999999999999998754 235677888


Q ss_pred             HHHHHHHcCCh-hHHHHHHHHHHHhc
Q 024712          138 RVAIAKAQGNF-PTAIEWLNKYLETF  162 (263)
Q Consensus       138 l~~~~~~~g~~-~~A~~~~~~~l~~~  162 (263)
                      +..++.+.|+. ++|...+++..+..
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            88888998885 67889999888754

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.30  E-value=0.23  Score=40.31  Aligned_cols=113  Identities=17%  Similarity=-0.019  Sum_probs=72.9

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhc---CCCH----HHH
Q 024712          103 LEGILLEAKGLWAEAEKAYSSLLEDNP--LD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLETF---MADH----DAW  169 (263)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---p~~~----~~~  169 (263)
                      .+|..|+..|+|.+|.+.+.++...-.  ++    .+++..-..+|...+++.++...+.++....   +.++    ...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            678888888888888888877776311  11    2456666777888888888888888876543   1233    233


Q ss_pred             HHHHHHHH-hcccHHHHHHHHHHHHhhCCCC--H---HHHHHHHHHHHhcCC
Q 024712          170 RELAEIYV-SLQMYKQAAFCYEELILSQPTV--P---LYHLAYADVLYTLGG  215 (263)
Q Consensus       170 ~~la~~~~-~~g~~~~A~~~~~~al~~~p~~--~---~~~~~la~~~~~~g~  215 (263)
                      ..-|.++. ..++|..|...|-+++......  +   .+...++-+-...++
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence            45577777 7888888888888887443221  2   233334445555555

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.19  Score=41.63  Aligned_cols=98  Identities=15%  Similarity=0.174  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHH---hcCCCH--
Q 024712           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLE---TFMADH--  166 (263)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~---~~p~~~--  166 (263)
                      ..+...++.++...|++.+|...+..+....  ..+    ...+.....++...+++.+|...+.++..   ..+..+  
T Consensus       137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l  216 (445)
T 4b4t_P          137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL  216 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence            3455678999999999999999998886531  111    35677788889999999999999988743   233333  


Q ss_pred             --HHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712          167 --DAWRELAEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       167 --~~~~~la~~~~~~g~~~~A~~~~~~al~~  195 (263)
                        ..+...|.++...++|.+|..+|..++..
T Consensus       217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              34566788888899999999999988764

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.86  E-value=0.37  Score=43.99  Aligned_cols=98  Identities=9%  Similarity=-0.123  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-CCCHHHHHHHH
Q 024712           99 RVGRLEGILLEAKGLWAEAEKAYSSLLED----NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-MADHDAWRELA  173 (263)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la  173 (263)
                      ..+..+-..+.+.|+.++|..+|....+.    -.-+...|..+...+.+.|+.++|...|++..+.. .-|...|..+.
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            35677788899999999999999775432    23357788999999999999999999999988752 23566777788


Q ss_pred             HHHHhccc-HHHHHHHHHHHHhhC
Q 024712          174 EIYVSLQM-YKQAAFCYEELILSQ  196 (263)
Q Consensus       174 ~~~~~~g~-~~~A~~~~~~al~~~  196 (263)
                      .++.+.|+ .++|..++++.....
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcC
Confidence            88888887 478889999888654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.79  E-value=0.017  Score=48.26  Aligned_cols=128  Identities=13%  Similarity=0.025  Sum_probs=58.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHH--h---------CCCcHHHHHHHHHHHHHcCcHHHHH----------HHHHHHHh--
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQK--Q---------FPESKRVGRLEGILLEAKGLWAEAE----------KAYSSLLE--  126 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~--~---------~p~~~~~~~~~a~~~~~~~~~~~A~----------~~~~~~~~--  126 (263)
                      ....+++.+++++|..+...++.  .         ++-.+.+|+..+.++...|+.....          ..+-.++.  
T Consensus       142 ~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta  221 (523)
T 4b4t_S          142 VQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIA  221 (523)
T ss_dssp             -------------------------------------------------------------CHHHHHHHHTHHHHHHHHC
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH
Confidence            34446678899998888765551  1         2234566777777777777654421          12222222  


Q ss_pred             ---cCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712          127 ---DNPL-DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       127 ---~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  195 (263)
                         .++. ....+..+-..|...+.+++|..+..++.  +|.+       ...++.+|.++..+++|.+|.+++..|+..
T Consensus       222 ~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk  299 (523)
T 4b4t_S          222 SLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK  299 (523)
T ss_dssp             CSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred             hcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence               2222 23577888899999999999999999985  5533       445678999999999999999999999988


Q ss_pred             CCCC
Q 024712          196 QPTV  199 (263)
Q Consensus       196 ~p~~  199 (263)
                      .|.+
T Consensus       300 ap~~  303 (523)
T 4b4t_S          300 APHN  303 (523)
T ss_dssp             CSCS
T ss_pred             CCcc
Confidence            7754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.083  Score=43.57  Aligned_cols=100  Identities=12%  Similarity=-0.060  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--CCH----HH
Q 024712           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL---DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--ADH----DA  168 (263)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--~~~----~~  168 (263)
                      ..+...+|..+...|++++|.+.|.++......   -.+.+.....++...+++..+...+.++.....  .++    ..
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            346778999999999999999999998875322   246778888888899999999999999876532  222    23


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712          169 WRELAEIYVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       169 ~~~la~~~~~~g~~~~A~~~~~~al~~~p  197 (263)
                      ....|.++...++|..|...|..++....
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            34557777788999999999988876544

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.71  E-value=0.23  Score=41.61  Aligned_cols=128  Identities=10%  Similarity=-0.020  Sum_probs=57.9

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHcCChhHH----------HHHHHHHHHh
Q 024712          103 LEGILLEAKGLWAEAEKAYSSLLE-----------DNPLDPVLHKRRVAIAKAQGNFPTA----------IEWLNKYLET  161 (263)
Q Consensus       103 ~~a~~~~~~~~~~~A~~~~~~~~~-----------~~p~~~~~~~~l~~~~~~~g~~~~A----------~~~~~~~l~~  161 (263)
                      ..-..+...+++++|.++-..++.           +++-...+|+.++.++...|+....          ...+-.+++.
T Consensus       141 L~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rt  220 (523)
T 4b4t_S          141 LVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKI  220 (523)
T ss_dssp             --------------------------------------------------------------CHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHH
Confidence            334445667889988887766551           1333345677777777777765542          2233333332


Q ss_pred             -----cCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712          162 -----FMAD-HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-------PLYHLAYADVLYTLGGVDNILLAKKYYAS  228 (263)
Q Consensus       162 -----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~~~~A~~~~~~  228 (263)
                           ++.. ...+..+-..|...+.|++|..+..++.  .|..       ...++.+|.++...++   |.+|.+++..
T Consensus       221 a~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~---Y~eA~~~L~~  295 (523)
T 4b4t_S          221 ASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLD---YSTANEYIIA  295 (523)
T ss_dssp             CCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred             HhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHH
Confidence                 2222 4566778888999999999999999885  3422       2356778999999999   9999999999


Q ss_pred             hhccCCC
Q 024712          229 TIDLTGG  235 (263)
Q Consensus       229 al~~~~~  235 (263)
                      |+...|.
T Consensus       296 A~rkap~  302 (523)
T 4b4t_S          296 AIRKAPH  302 (523)
T ss_dssp             HTSSCSC
T ss_pred             HHHhCCc
Confidence            9998885

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.69  E-value=0.74  Score=32.46  Aligned_cols=187  Identities=13%  Similarity=0.045  Sum_probs=121.8

Q ss_pred             HHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 024712           31 VKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA  110 (263)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~  110 (263)
                      .+..+.++.+.++-++.-+...       .|   .--..++..++-.|++..++-++..     -+.....+..+.+|..
T Consensus        10 ~Ks~kY~dYdt~~fLsa~L~~~-------~~---eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~k   74 (242)
T 3kae_A           10 CKSIRYRDYETAIFLAACLLPC-------KP---EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKK   74 (242)
T ss_dssp             HHHHHTTCHHHHHHHHHHHC--------------CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHH
T ss_pred             HHHhhcccccHHHHHHHHHccC-------Ch---HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHH
Confidence            3445567777777777666544       22   2223356677889999988877642     3456777888999999


Q ss_pred             cCcHHHHHHHHHHHHhc-----------------CCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 024712          111 KGLWAEAEKAYSSLLED-----------------NPLDPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL  172 (263)
Q Consensus       111 ~~~~~~A~~~~~~~~~~-----------------~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  172 (263)
                      ..+|..|+..++++++-                 +|.+.. .+..+|.++...|+.++|+.++.......|-.+.+-..+
T Consensus        75 lKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnli  154 (242)
T 3kae_A           75 KKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLL  154 (242)
T ss_dssp             TTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHH
Confidence            99999999999999942                 344443 556789999999999999999999888776554332110


Q ss_pred             H-----------HHH------HhcccHHHHH--------HHHHHHHhhCCCCHH-HHHHHHHHHHhcCCCCcHHHHHHHH
Q 024712          173 A-----------EIY------VSLQMYKQAA--------FCYEELILSQPTVPL-YHLAYADVLYTLGGVDNILLAKKYY  226 (263)
Q Consensus       173 a-----------~~~------~~~g~~~~A~--------~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~~~~A~~~~  226 (263)
                      -           ++.      .....+....        ...++-.+.-|.-.. .....+.-++.+|-   .++....|
T Consensus       155 yeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~---~d~s~~lf  231 (242)
T 3kae_A          155 LENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGM---NDKSKACF  231 (242)
T ss_dssp             HTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred             hhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhccc---chhHHHHH
Confidence            0           000      0001111122        222333344455433 34456788999999   99999999


Q ss_pred             HHhhccCCC
Q 024712          227 ASTIDLTGG  235 (263)
Q Consensus       227 ~~al~~~~~  235 (263)
                      ...-..+|.
T Consensus       232 ~~lR~kDP~  240 (242)
T 3kae_A          232 ELVRRKDPM  240 (242)
T ss_dssp             HHHHHHSTT
T ss_pred             HHHHhcCCC
Confidence            988888773

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.69  E-value=1.5  Score=40.99  Aligned_cols=118  Identities=11%  Similarity=-0.117  Sum_probs=81.8

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc---------------------
Q 024712          104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF---------------------  162 (263)
Q Consensus       104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---------------------  162 (263)
                      +...+...+.++-+.+    .+..-|.++...+.+|.++...|++++|..+|+++-.-.                     
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence            3444555566655443    334456677777889999999999999999998853210                     


Q ss_pred             --CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-HH----HHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712          163 --MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PL----YHLAYADVLYTLGGVDNILLAKKYYAS  228 (263)
Q Consensus       163 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~----~~~~la~~~~~~g~~~~~~~A~~~~~~  228 (263)
                        ..-+..|..+..++...|.++.+++..+.|++..+.+ ..    .|.++=..+...|+   |++|...+..
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~---ye~Ay~aL~~  963 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK---FDAAHVALMV  963 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC---SGGGGHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC---HHHHHHHHHh
Confidence              1113456667778888899999999999999776433 32    46666677888899   8888766644

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=91.63  E-value=6.2  Score=34.16  Aligned_cols=158  Identities=9%  Similarity=-0.053  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  143 (263)
                      +.....++......+...++...+.......+++. ....++....+.|+++.|...+..+-..........+-+|..+.
T Consensus       252 ~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~  330 (618)
T 1qsa_A          252 QELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLL  330 (618)
T ss_dssp             HHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHH
Confidence            33444455444455545566666666554433333 23333344556688888888887765544445666777888888


Q ss_pred             HcCChhHHHHHHHHHHHhc-----------------------CCC-----HHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712          144 AQGNFPTAIEWLNKYLETF-----------------------MAD-----HDAWRELAEIYVSLQMYKQAAFCYEELILS  195 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~-----------------------p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~  195 (263)
                      ..|+.++|...|+++....                       +..     ...-...+..++..|....|...+..++..
T Consensus       331 ~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~  410 (618)
T 1qsa_A          331 ERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS  410 (618)
T ss_dssp             HTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence            8888888888887765410                       000     001233455666777777777777766653


Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 024712          196 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYA  227 (263)
Q Consensus       196 ~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~  227 (263)
                      .  ++.-...++.+....|.   +..++....
T Consensus       411 ~--~~~~~~~la~~a~~~~~---~~~~v~~~~  437 (618)
T 1qsa_A          411 K--SKTEQAQLARYAFNNQW---WDLSVQATI  437 (618)
T ss_dssp             C--CHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred             C--CHHHHHHHHHHHHHCCC---hHHHHHHHH
Confidence            2  23444566777777777   666665443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.32  E-value=4  Score=37.37  Aligned_cols=113  Identities=8%  Similarity=-0.128  Sum_probs=59.5

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-CCC--HHHHHHHHHHHHHcCC
Q 024712           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLD--PVLHKRRVAIAKAQGN  147 (263)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~--~~~~~~l~~~~~~~g~  147 (263)
                      ...+...|.++-+.    .+..-.|.++...+.+|.++...|++++|..+|+++-.-- ..+  .........+.-    
T Consensus       817 ~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~----  888 (950)
T 4gq2_M          817 VEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE----  888 (950)
T ss_dssp             HHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHH----
T ss_pred             HHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccC----
Confidence            33444455554332    2344456666666777777777777777777777664311 010  000000000000    


Q ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-CCCCHH
Q 024712          148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS-QPTVPL  201 (263)
Q Consensus       148 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~  201 (263)
                                ..+........|..+..++...+-++-++...+.|+.. .++++.
T Consensus       889 ----------~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~  933 (950)
T 4gq2_M          889 ----------KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED  933 (950)
T ss_dssp             ----------HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred             ----------cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence                      00001111236667788888888899898888888864 344544

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.45  E-value=7.4  Score=35.64  Aligned_cols=100  Identities=14%  Similarity=0.068  Sum_probs=71.5

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-C--------------------
Q 024712          138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS-Q--------------------  196 (263)
Q Consensus       138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~--------------------  196 (263)
                      +...+...|.++-+    ...+...|.++..-+.+|.++...|++++|..+|+++-.- .                    
T Consensus       816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e  891 (950)
T 4gq2_M          816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  891 (950)
T ss_dssp             HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred             HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence            45555666766543    3456677888888899999999999999999999876421 0                    


Q ss_pred             CCC--HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhH
Q 024712          197 PTV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGI  244 (263)
Q Consensus       197 p~~--~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l  244 (263)
                      +..  ...|..+..++...+-   ++-++.+.+.|++.....+......+
T Consensus       892 ~~~~~~~YY~hV~~LFE~~~a---~~~vi~fA~lAI~~~~~dd~~l~~~l  938 (950)
T 4gq2_M          892 HQNLLSCYYLHLSKKLFEESA---YIDALEFSLLADASKETDDEDLSIAI  938 (950)
T ss_dssp             TCSHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCSCCHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcccCCccchHHH
Confidence            011  1367788899999999   99999999999975433244333333

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=88.21  E-value=12  Score=32.37  Aligned_cols=123  Identities=11%  Similarity=0.019  Sum_probs=81.4

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPV----LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (263)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  180 (263)
                      +.......+.+.|...+.+.....+.+..    .+..++.-....+...++...+.+.....+++ ......+......|
T Consensus       221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~  299 (618)
T 1qsa_A          221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMALGTG  299 (618)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHHHHHHHHCC
Confidence            44444456788888888877654433332    22233333333443667778888766544433 33333344455679


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712          181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  231 (263)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~  231 (263)
                      +++.|...+...-...+..+...+-+|.++...|+   .++|..+|+++.+
T Consensus       300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~---~~~a~~~~~~~a~  347 (618)
T 1qsa_A          300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR---EAEAKEILHQLMQ  347 (618)
T ss_dssp             CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCC---HHHHHHHHHHHhc
Confidence            99999999977655444567788999999999999   9999999999875

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=83.79  E-value=8.2  Score=35.14  Aligned_cols=11  Identities=9%  Similarity=-0.173  Sum_probs=5.7

Q ss_pred             HHHHHHHHHhh
Q 024712          220 LLAKKYYASTI  230 (263)
Q Consensus       220 ~~A~~~~~~al  230 (263)
                      .+++..+.+..
T Consensus       646 ~~aid~L~~L~  656 (963)
T 4ady_A          646 QSAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            45555555543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=81.83  E-value=17  Score=28.42  Aligned_cols=150  Identities=6%  Similarity=-0.043  Sum_probs=77.8

Q ss_pred             HHHcCChHHHHHHHHHHHHhC----C--CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHh---c--CCCCHHHHHHHHHHH
Q 024712           74 AMDCQCLDVAKDCIKVLQKQF----P--ESKRVGRLEGILLEAKGLWAEAEKAYSSLLE---D--NPLDPVLHKRRVAIA  142 (263)
Q Consensus        74 ~~~~~~~~~A~~~~~~~~~~~----p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~--~p~~~~~~~~l~~~~  142 (263)
                      ....|++-+|-+.++.+....    .  +-.++.+.-+..+...|++..|..+..-.++   .  .|-+......+..++
T Consensus        23 ~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~  102 (312)
T 2wpv_A           23 KIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI  102 (312)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred             HhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            345567777766666555542    1  1223344445566666777666554322222   1  233344455555555


Q ss_pred             HHcCChh-HHHHHHHHHHHhc-------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-
Q 024712          143 KAQGNFP-TAIEWLNKYLETF-------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-  213 (263)
Q Consensus       143 ~~~g~~~-~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-  213 (263)
                      ......+ .=..++++++...       -.++..+..+|..+...|++.+|...|-.   -+.+++..+..+-.-+... 
T Consensus       103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~---~~~~s~~~~a~~l~~w~~~~  179 (312)
T 2wpv_A          103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML---GTHDSMIKYVDLLWDWLCQV  179 (312)
T ss_dssp             TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT---SCHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh---CCCccHHHHHHHHHHHHHhc
Confidence            4422111 2234445555431       24678888889998888888888887741   1112344443333333333 


Q ss_pred             --CCCCcHHHHHHHHHHh
Q 024712          214 --GGVDNILLAKKYYAST  229 (263)
Q Consensus       214 --g~~~~~~~A~~~~~~a  229 (263)
                        |.   ..++--+..++
T Consensus       180 ~~~~---~~e~dlf~~Ra  194 (312)
T 2wpv_A          180 DDIE---DSTVAEFFSRL  194 (312)
T ss_dssp             TCCC---HHHHHHHHHHH
T ss_pred             CCCC---cchHHHHHHHH
Confidence              55   55555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	263
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	9e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	9e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 6e-13
 Identities = 35/182 (19%), Positives = 56/182 (30%), Gaps = 3/182 (1%)

Query: 51  NDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA 110
           +  +K   L P+    Y  +     + +  D A           P    V      +   
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249

Query: 111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR 170
           +GL   A   Y   +E  P  P  +       K +G+   A +  N  L       D+  
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309

Query: 171 ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230
            LA I       ++A   Y + +   P     H   A VL   G +     A  +Y   I
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE---ALMHYKEAI 366

Query: 231 DL 232
            +
Sbjct: 367 RI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 2e-11
 Identities = 35/161 (21%), Positives = 59/161 (36%)

Query: 54  KKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL 113
            +  +L P+   ++  ++    +   +D+A D  +   +  P            L+ KG 
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286

Query: 114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA 173
            AEAE  Y++ L   P           I + QGN   A+    K LE F     A   LA
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346

Query: 174 EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
            +       ++A   Y+E I   PT    +    + L  + 
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 2e-10
 Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 3/172 (1%)

Query: 61  PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120
           P+    +  +         + +A    +      P         G +L+   ++  A  A
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225

Query: 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180
           Y   L  +P   V+H     +   QG    AI+   + +E      DA+  LA       
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285

Query: 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
              +A  CY   +   PT        A++    G ++    A + Y   +++
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE---AVRLYRKALEV 334

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 3e-09
 Identities = 26/151 (17%), Positives = 44/151 (29%)

Query: 64  WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSS 123
           + +   +         L+ AK C     +  P         G +  A+G    A   +  
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194

Query: 124 LLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 183
            +  +P     +     + K    F  A+    + L            LA +Y    +  
Sbjct: 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254

Query: 184 QAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
            A   Y   I  QP  P  +   A+ L   G
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKG 285

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 1/90 (1%)

Query: 101 GRLE-GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYL 159
           G +E        G +  AE+    L    P +  +     +I         +  +    +
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

Query: 160 ETFMADHDAWRELAEIYVSLQMYKQAAFCY 189
           +      +A+  L  +Y      ++A   Y
Sbjct: 61  KQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 9e-06
 Identities = 9/67 (13%), Positives = 20/67 (29%)

Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204
            G+F  A     +       +      L+ I+   +   ++A      I   P +   + 
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71

Query: 205 AYADVLY 211
              +V  
Sbjct: 72  NLGNVYK 78

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 46.6 bits (110), Expect = 9e-07
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 1/109 (0%)

Query: 110 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW 169
           ++G   +A +     ++ +P D  L    + +    G+F  A E L + ++ F       
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67

Query: 170 RELAEIYVSLQMYKQAAFCY-EELILSQPTVPLYHLAYADVLYTLGGVD 217
            +L  +  + Q  K  A       +L +       L   ++       +
Sbjct: 68  SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYE 116

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 43.5 bits (102), Expect = 9e-06
 Identities = 10/86 (11%), Positives = 24/86 (27%)

Query: 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201
           A ++G    A+E L + ++    D        E+      +++A     + I   P    
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 202 YHLAYADVLYTLGGVDNILLAKKYYA 227
                  ++       +         
Sbjct: 66  GASQLRHLVKAAQARKDFAQGAATAK 91

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 4e-06
 Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 8/130 (6%)

Query: 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET 161
           + +G  L     + EA   Y   +  NPL  V +  R            A+    + LE 
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67

Query: 162 FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221
                 A   L +  + ++ Y +A    +             L + D + +      + +
Sbjct: 68  DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE---QRLNFGDDIPS-----ALRI 119

Query: 222 AKKYYASTID 231
           AKK   ++I+
Sbjct: 120 AKKKRWNSIE 129

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 16/108 (14%), Positives = 33/108 (30%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           EG+    +G    A   + + ++ +P      +              AI  L + LE   
Sbjct: 25  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 84

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 211
            +  A   LA  + +  + +QA     + +   P          +   
Sbjct: 85  DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 132

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 7e-04
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 3/110 (2%)

Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163
           EG+L   K  W  A  A+S++ + +     +      +     N   A +   + +    
Sbjct: 11  EGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213
               A+ +   +Y   + Y  A    +E ++      L       + + L
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKL 117

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 13/119 (10%), Positives = 27/119 (22%), Gaps = 4/119 (3%)

Query: 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD 167
                   ++   Y   L          +  V  +    +   + + L +          
Sbjct: 218 AFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL 277

Query: 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 226
               L      L   K+    +  L    P    Y             ++N +L  +Y 
Sbjct: 278 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL----LENSVLKMEYA 332

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	263
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.93
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.92
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.92
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.92
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.82
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.82
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.81
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.81
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.8
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.79
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.76
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.74
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.73
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.73
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.7
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.7
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.7
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.69
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.69
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.68
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.68
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.68
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.67
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.67
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.67
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.65
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.65
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.64
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.6
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.58
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.48
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.44
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.43
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.37
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.36
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.32
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.31
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.31
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.29
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.27
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.17
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.96
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.67
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.65
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.57
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.53
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.51
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.22
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	94.33
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.02

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.9e-25  Score=179.02  Aligned_cols=187  Identities=19%  Similarity=0.141  Sum_probs=180.4

Q ss_pred             cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR  138 (263)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  138 (263)
                      .+|+.+.++..+|.++...|++++|+..++++....|..+..+..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus       198 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  277 (388)
T d1w3ba_         198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL  277 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred             hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCc
Q 024712          139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN  218 (263)
Q Consensus       139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  218 (263)
                      |.++...|++++|+..+++++...|.+...+..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+   
T Consensus       278 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---  354 (388)
T d1w3ba_         278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK---  354 (388)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC---
T ss_pred             HHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             HHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          219 ILLAKKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       219 ~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                      +++|+..|+++++++|+ +..+++.++.++.
T Consensus       355 ~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~  384 (388)
T d1w3ba_         355 LQEALMHYKEAIRISPT-FADAYSNMGNTLK  384 (388)
T ss_dssp             CHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            99999999999999996 8888888877754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.4e-25  Score=173.67  Aligned_cols=193  Identities=12%  Similarity=0.118  Sum_probs=174.4

Q ss_pred             HhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 024712           33 KLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG  112 (263)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~  112 (263)
                      ....++.++++.....++..       +|+.+.++..+|.++...|++++|+..+.++++..|+++..+..+|.++...|
T Consensus        29 ~~~~g~~~~A~~~~~~al~~-------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          29 RLQEGDLPNAVLLFEAAVQQ-------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHS-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            34556678888888877766       88889999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhcCCC---------------------------------------------------CHHHHHHHHHH
Q 024712          113 LWAEAEKAYSSLLEDNPL---------------------------------------------------DPVLHKRRVAI  141 (263)
Q Consensus       113 ~~~~A~~~~~~~~~~~p~---------------------------------------------------~~~~~~~l~~~  141 (263)
                      ++++|+..+++++..+|.                                                   ++.++..+|.+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~  181 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  181 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            999888888877654433                                                   23467788999


Q ss_pred             HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH
Q 024712          142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL  221 (263)
Q Consensus       142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~  221 (263)
                      +...|++++|+..+++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.++...|+   +++
T Consensus       182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~  258 (323)
T d1fcha_         182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA---HRE  258 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHH
T ss_pred             HHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCC---HHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999   999


Q ss_pred             HHHHHHHhhccCCC
Q 024712          222 AKKYYASTIDLTGG  235 (263)
Q Consensus       222 A~~~~~~al~~~~~  235 (263)
                      |+..|+++++++|+
T Consensus       259 A~~~~~~al~l~p~  272 (323)
T d1fcha_         259 AVEHFLEALNMQRK  272 (323)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCc
Confidence            99999999999886

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.7e-25  Score=175.00  Aligned_cols=192  Identities=11%  Similarity=0.083  Sum_probs=177.2

Q ss_pred             cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCCCCHHHH
Q 024712           57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLH  135 (263)
Q Consensus        57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~  135 (263)
                      ...+|+...++..++.++...+.+++|+..++++++.+|++..+|..+|.++...| ++++|+..+++++..+|++..+|
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~  115 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  115 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            45578889999999999999999999999999999999999999999999999987 59999999999999999999999


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          136 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      ..+|.++...|++++|+..+.++++++|.+..+|..+|.++...|++++|+.+++++++++|.+..+|.++|.++...+.
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             CC---cHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          216 VD---NILLAKKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       216 ~~---~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                      ..   .+++|+..+.++++++|+ +..++..+...+.
T Consensus       196 ~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~  231 (315)
T d2h6fa1         196 YNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQ  231 (315)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHT
T ss_pred             cchhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHH
Confidence            22   257999999999999997 7777766655543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.1e-24  Score=169.36  Aligned_cols=180  Identities=16%  Similarity=0.067  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  146 (263)
                      ....|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.++++.+|++...+..+|.++...|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCC---------------------------------------------------CHHHHHHHHHH
Q 024712          147 NFPTAIEWLNKYLETFMA---------------------------------------------------DHDAWRELAEI  175 (263)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~---------------------------------------------------~~~~~~~la~~  175 (263)
                      ++++|+..+++++...|.                                                   ++.++..+|.+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~  181 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  181 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            999998888876655443                                                   24567789999


Q ss_pred             HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          176 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      +...|++++|+.+|++++..+|+++.++..+|.++...|+   +++|+..|+++++++|+ ++.+++.++.++..
T Consensus       182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  252 (323)
T d1fcha_         182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ---SEEAVAAYRRALELQPG-YIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcccccccccccccccchhhhhhccccccc---chhHHHHHHHHHHHhhc-cHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999   99999999999999996 88888888888766

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-22  Score=163.02  Aligned_cols=187  Identities=18%  Similarity=0.116  Sum_probs=180.1

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      .|+...++..+|..+...|++++|...++++++.+|+++.++..+|.++...|++++|+..++++...+|.....+..+|
T Consensus       165 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  244 (388)
T d1w3ba_         165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA  244 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHH
Confidence            67788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcH
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI  219 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~  219 (263)
                      .++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.++..+..+|.++...|+   +
T Consensus       245 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~  321 (388)
T d1w3ba_         245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN---I  321 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---H
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC---H
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712          220 LLAKKYYASTIDLTGGKNTKALFGICLVMFV  250 (263)
Q Consensus       220 ~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~  250 (263)
                      ++|+..|+++++++|+ +..+++.++.++..
T Consensus       322 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~  351 (388)
T d1w3ba_         322 EEAVRLYRKALEVFPE-FAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHHHHHHHHHTTSCTT-CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            9999999999999996 88888888777665

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4e-23  Score=163.22  Aligned_cols=213  Identities=10%  Similarity=0.120  Sum_probs=185.1

Q ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCcHHHH
Q 024712           23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQKQFPESKRVG  101 (263)
Q Consensus        23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~  101 (263)
                      +++.+++.+.... ...++++.....++..       +|+...+|..+|.++...| ++++|+..++++++.+|++..++
T Consensus        44 ~a~~~~~~~~~~~-e~~~~Al~~~~~ai~l-------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~  115 (315)
T d2h6fa1          44 DVYDYFRAVLQRD-ERSERAFKLTRDAIEL-------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  115 (315)
T ss_dssp             HHHHHHHHHHHHT-CCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHhC-CchHHHHHHHHHHHHH-------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            4556666555444 4567787777777655       9999999999999998876 58999999999999999999999


Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM  181 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  181 (263)
                      ..+|.++...|++++|+..+.++++.+|.+..+|..+|.++...|++++|+..++++++++|.+..+|..+|.++...+.
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999877655


Q ss_pred             ------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC-cchhHHHhHHHH
Q 024712          182 ------YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLV  247 (263)
Q Consensus       182 ------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~-~~~~~~~~l~~~  247 (263)
                            +++|+..+.++++++|++..++..++.++...|    ..++...+.+++++.|+ .....+..++.+
T Consensus       196 ~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~  264 (315)
T d2h6fa1         196 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG----LSKYPNLLNQLLDLQPSHSSPYLIAFLVDI  264 (315)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC----GGGCHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred             cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC----hHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence                  789999999999999999999999998865544    57888999999988886 344444444443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.1e-22  Score=154.49  Aligned_cols=181  Identities=14%  Similarity=0.034  Sum_probs=154.0

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      ++....++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  112 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh------------------------
Q 024712          140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS------------------------  195 (263)
Q Consensus       140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------------  195 (263)
                      .++...|++++|+..++++++.+|.+......++.++...+..+.+..........                        
T Consensus       113 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (259)
T d1xnfa_         113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLME  192 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888777776666655544443333332222                        


Q ss_pred             ------------CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHh
Q 024712          196 ------------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFG  243 (263)
Q Consensus       196 ------------~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~  243 (263)
                                  .|....++..+|.++...|+   +++|+.+|++++..+|+..+...++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~a  249 (259)
T d1xnfa_         193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALFKLAVANNVHNFVEHRYA  249 (259)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCTTCHHHHHH
T ss_pred             HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence                        23334477889999999999   9999999999999999744333333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.1e-19  Score=120.73  Aligned_cols=110  Identities=19%  Similarity=0.161  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (263)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  180 (263)
                      +...|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.++++.+|+++.+|+.+|.++..+|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            34567777778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024712          181 MYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (263)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (263)
                      ++++|+..|+++++.+|+++.++..++.+.
T Consensus        86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            888888888888888888877777776654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=9.9e-19  Score=138.88  Aligned_cols=188  Identities=11%  Similarity=-0.064  Sum_probs=124.6

Q ss_pred             ccCcchHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHH
Q 024712           58 ALGPDVWTLYEQVSIAAMDCQ--CLDVAKDCIKVLQKQFPESKRVG-RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL  134 (263)
Q Consensus        58 ~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  134 (263)
                      ..+|....++..++.++...+  ++++|+..+++++..+|.+..++ ...|.++...+.+++|+..+++++..+|.+..+
T Consensus       101 ~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a  180 (334)
T d1dcea1         101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  180 (334)
T ss_dssp             HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred             HhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHH
Confidence            345555666665555555443  35566666666666666555543 344555555666666666666666666666666


Q ss_pred             HHHHHHHHHHcCChhHH------------------------------HHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHH
Q 024712          135 HKRRVAIAKAQGNFPTA------------------------------IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ  184 (263)
Q Consensus       135 ~~~l~~~~~~~g~~~~A------------------------------~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~  184 (263)
                      |..+|.++...|++++|                              ...+.+++...|.+...+..+|.++...|++.+
T Consensus       181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~  260 (334)
T d1dcea1         181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELE  260 (334)
T ss_dssp             HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHH
Confidence            66666666665554322                              222233333333333334445566666788888


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          185 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       185 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                      |+..+.+++..+|.+..++..+|.++...|+   +++|+++|+++++++|. ....|..|..+..
T Consensus       261 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~~  321 (334)
T d1dcea1         261 SCKELQELEPENKWCLLTIILLMRALDPLLY---EKETLQYFSTLKAVDPM-RAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG---HHHHHHHHHHHHHHCGG-GHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCchHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCcc-cHHHHHHHHHHHh
Confidence            9999999999999999999999999999999   99999999999999996 6777776655543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.1e-18  Score=133.29  Aligned_cols=153  Identities=17%  Similarity=0.028  Sum_probs=132.3

Q ss_pred             ChHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 024712           79 CLDVAKDCIKVLQKQFP----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW  154 (263)
Q Consensus        79 ~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  154 (263)
                      +.+.|+..+++++...+    ..+.+++.+|.+|...|++++|+..|++++.++|+++.++..+|.++...|++++|+..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            34456666677776543    45678899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          155 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       155 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      |+++++++|+++.++..+|.++...|++++|+..|+++++.+|.+......++.++...+.   .+.+...........+
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  170 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE---KQAKEVLKQHFEKSDK  170 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHSCC
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhh---HHHHHHHHHHhhccch
Confidence            9999999999999999999999999999999999999999999999988888888888876   5555554444444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.3e-18  Score=123.30  Aligned_cols=112  Identities=15%  Similarity=0.080  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (263)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  179 (263)
                      .+...|..++..|+|++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|.+..+|..+|.++...
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            34556888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024712          180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLY  211 (263)
Q Consensus       180 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  211 (263)
                      |++++|+.++++++.++|+++.++..++.+..
T Consensus        92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_          92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNK  123 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            88888888888888888888887777766643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.5e-18  Score=124.80  Aligned_cols=127  Identities=17%  Similarity=0.106  Sum_probs=88.9

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 024712           69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF  148 (263)
Q Consensus        69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  148 (263)
                      +.|..+...|++++|++.|.++   .|.++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+|++
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence            4577777777777777777643   3445667777777777777777777777777777777777777777777777777


Q ss_pred             hHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712          149 PTAIEWLNKYLETFMAD----------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT  198 (263)
Q Consensus       149 ~~A~~~~~~~l~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  198 (263)
                      ++|+..|++++...|.+                ..+++++|.++...|++++|+..+.+++.+.|.
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            77777777777654432                355666777777777777777777777766665

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.3e-18  Score=115.48  Aligned_cols=111  Identities=14%  Similarity=0.042  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 024712           66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ  145 (263)
Q Consensus        66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  145 (263)
                      -+...|..++..|++++|+.+|+++++.+|.++.++..+|.++...|++++|+..+.+++..+|+++.++..+|.++..+
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712          146 GNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (263)
Q Consensus       146 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  176 (263)
                      |++++|+..|+++++.+|+++.++..++.+.
T Consensus        85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            9999999999999999999999999988764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.3e-18  Score=122.53  Aligned_cols=129  Identities=14%  Similarity=0.033  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712          101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (263)
Q Consensus       101 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  180 (263)
                      ++..|..+...|+|++|++.|.++   .|.++.+++++|.++..+|++++|+..|+++++++|+++.+|+.+|.++..+|
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence            346799999999999999999864   45678899999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          181 MYKQAAFCYEELILSQPTV----------------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ++++|+..|++++...|.+                ..++.++|.++...|+   +++|.+.+.+++.+.|.
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~---~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSE  152 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCS
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC
Confidence            9999999999999875543                3578899999999999   99999999999999886

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-17  Score=118.25  Aligned_cols=127  Identities=13%  Similarity=-0.032  Sum_probs=114.8

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  142 (263)
                      ....+...|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            34556678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH--hcccHHHHHHHH
Q 024712          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV--SLQMYKQAAFCY  189 (263)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--~~g~~~~A~~~~  189 (263)
                      ...|++++|+..+++++.++|+++.++..++.+..  ..+.+++|+...
T Consensus        89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~  137 (159)
T d1a17a_          89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD  137 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999888876653  344566665543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.4e-18  Score=127.81  Aligned_cols=122  Identities=9%  Similarity=-0.105  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  143 (263)
                      ...+...|..++..|++++|+..|++++..+|.++.++..+|.+|...|++++|+..|+++++++|+++.+|..+|.++.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34466788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHH
Q 024712          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA  185 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A  185 (263)
                      .+|++++|+..|+++++++|.+...+...+..+...+....+
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  125 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW  125 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhHH
Confidence            999999999999999988887665555555555554444443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.3e-17  Score=122.53  Aligned_cols=119  Identities=16%  Similarity=0.046  Sum_probs=104.6

Q ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712           97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY  176 (263)
Q Consensus        97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  176 (263)
                      ++..+...|..++..|+|++|+..|++++..+|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|+.+|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      ..+|++++|+..|++++.++|++...+...+..+...+.
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  121 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  121 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            999999999999999999988654433333333333333

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=3.3e-16  Score=121.75  Aligned_cols=170  Identities=14%  Similarity=0.014  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC-----
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-----  131 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----  131 (263)
                      -...|.+.|.++...|++++|+..|.++.+..+      +...++..+|.+|...|++++|++.+++++...+..     
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence            456788999999999999999999999998742      334678899999999999999999999999875443     


Q ss_pred             -HHHHHHHHHHHHH-cCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---
Q 024712          132 -PVLHKRRVAIAKA-QGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP---  200 (263)
Q Consensus       132 -~~~~~~l~~~~~~-~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---  200 (263)
                       ..++..+|.++.. .|++++|+..+++++++.+..      ..++..+|.++..+|+|++|+..|++++...|.++   
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  195 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhh
Confidence             3577888888865 599999999999999875432      45688899999999999999999999999887764   


Q ss_pred             ----HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          201 ----LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       201 ----~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                          ..+...+.++...|+   +..|...+.++++++|.
T Consensus       196 ~~~~~~~~~~~~~~l~~~d---~~~A~~~~~~~~~~~~~  231 (290)
T d1qqea_         196 WSLKDYFLKKGLCQLAATD---AVAAARTLQEGQSEDPN  231 (290)
T ss_dssp             GGHHHHHHHHHHHHHHTTC---HHHHHHHHHGGGCC---
T ss_pred             hhHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCC
Confidence                356778889999999   99999999999999886

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.8e-16  Score=113.33  Aligned_cols=133  Identities=14%  Similarity=0.026  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  143 (263)
                      ...+...|..++..|++++|+..|++++...|.......          ........         ....++.++|.+|.
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~----------~~~~~~~~---------~~~~~~~nla~~y~   73 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN----------EEAQKAQA---------LRLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS----------HHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch----------HHHhhhch---------hHHHHHHHHHHHHH
Confidence            344455666666777777777777777666653221100          00000000         01235677888999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      ..|++++|+..+++++.++|+++.+++.+|.+++.+|++++|+.+|+++++++|+++.+...++.+....+.
T Consensus        74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998888888888777665

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.70  E-value=2.1e-16  Score=104.87  Aligned_cols=91  Identities=16%  Similarity=-0.011  Sum_probs=47.7

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712          102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM  181 (263)
Q Consensus       102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  181 (263)
                      +..|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|+++.+|..+|.+|...|+
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHH
Q 024712          182 YKQAAFCYEEL  192 (263)
Q Consensus       182 ~~~A~~~~~~a  192 (263)
                      +++|++++++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.6e-15  Score=108.29  Aligned_cols=88  Identities=15%  Similarity=0.012  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  178 (263)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  178 (263)
                      .++..+|.+|...|++++|+..+++++..+|+++.++..+|.++..+|++++|+..|+++++++|+++.+...++.+...
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             cccHHHHH
Q 024712          179 LQMYKQAA  186 (263)
Q Consensus       179 ~g~~~~A~  186 (263)
                      .+...+..
T Consensus       143 ~~~~~~~e  150 (170)
T d1p5qa1         143 IRRQLARE  150 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77666543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=1.4e-16  Score=126.29  Aligned_cols=138  Identities=12%  Similarity=0.013  Sum_probs=122.1

Q ss_pred             CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----------cCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 024712           78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----------KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN  147 (263)
Q Consensus        78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  147 (263)
                      +..++|+.+++++++.+|++..+|..++.++..          .|++++|+.++++++..+|+++.+|..+|.++...+.
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~  122 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence            345899999999999999999988777766554          3558899999999999999999999999998888765


Q ss_pred             --hhHHHHHHHHHHHhcCCCHHHHH-HHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          148 --FPTAIEWLNKYLETFMADHDAWR-ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       148 --~~~A~~~~~~~l~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                        +++|+..++++++.+|.+..++. ..|.++...+.+++|+..+++++..+|.+..++..+|.++...|+
T Consensus       123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~  193 (334)
T d1dcea1         123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  193 (334)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred             ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence              78999999999999999988864 677888889999999999999999999999999999999999998

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.69  E-value=2.1e-16  Score=104.87  Aligned_cols=94  Identities=13%  Similarity=-0.030  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL  213 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  213 (263)
                      .++.+|..++..|++++|+..+++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.+|...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHhh
Q 024712          214 GGVDNILLAKKYYASTI  230 (263)
Q Consensus       214 g~~~~~~~A~~~~~~al  230 (263)
                      |+   +++|++.+++.|
T Consensus        98 g~---~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HN---ANAALASLRAWL  111 (112)
T ss_dssp             HH---HHHHHHHHHHHH
T ss_pred             CC---HHHHHHHHHHHh
Confidence            99   999999999875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.69  E-value=1.7e-15  Score=107.90  Aligned_cols=133  Identities=9%  Similarity=-0.045  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK  143 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  143 (263)
                      ...+...|..++..|++.+|+..|.+++...|.......          ......         .+....++.++|.++.
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~----------~~~~~~---------~~~~~~~~~Nla~~~~   75 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE----------KESKAS---------ESFLLAAFLNLAMCYL   75 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH----------HHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch----------hhhhhc---------chhHHHHHHhHHHHHH
Confidence            444555666666666666666666666654432111000          000000         0111345677888999


Q ss_pred             HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      .+|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|++++.++|+++.+...++.+....+.
T Consensus        76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  147 (168)
T d1kt1a1          76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE  147 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred             HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999998888888888777665

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=3.5e-15  Score=116.80  Aligned_cols=153  Identities=15%  Similarity=0.104  Sum_probs=105.7

Q ss_pred             ChHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChhHHHHHHH
Q 024712           79 CLDVAKDCIKVLQKQ-FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEWLN  156 (263)
Q Consensus        79 ~~~~A~~~~~~~~~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~  156 (263)
                      ..++|..+|+++++. .|.+..++..++.++...|+++.|...|++++...|.+. .+|..++.+....|+++.|...|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            345666777777754 456666677777777777777777777777777666554 356667777777777777777777


Q ss_pred             HHHHhcCCCHHHHHHHHHHHH-hcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          157 KYLETFMADHDAWRELAEIYV-SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       157 ~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      +++...|.+...|...|.... ..|+.+.|..+|++++...|.++..+..++..+...|+   ++.|+..|++++...|
T Consensus       159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~---~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHSSS
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCC
Confidence            777777777777766665543 35667777777777777777777777777777777777   7777777777776654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.68  E-value=1.2e-15  Score=106.97  Aligned_cols=132  Identities=11%  Similarity=-0.008  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712           65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA  144 (263)
Q Consensus        65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  144 (263)
                      ..+...|..++..|+|.+|+..|.+++...|.......             .........+     ...++.++|.+++.
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~-------------~~~~~~~~~~-----~~~~~~Nla~~~~~   79 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD-------------QILLDKKKNI-----EISCNLNLATCYNK   79 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC-------------HHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhh-------------HHHHHhhhhH-----HHHHHhhHHHHHHH
Confidence            34455677777777777777777777765543211000             0000000000     12356678888888


Q ss_pred             cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712          145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG  214 (263)
Q Consensus       145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  214 (263)
                      +|++++|+..++++++++|.+..+|+.+|.++..+|++++|+.+|+++++++|++..+...++.+..+++
T Consensus        80 l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          80 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888777776665443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=5.6e-16  Score=110.65  Aligned_cols=131  Identities=13%  Similarity=0.022  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712           67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG  146 (263)
Q Consensus        67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  146 (263)
                      +...|..++..|++.+|+..|.+++...+..                  .+..........+|....++.++|.++...|
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~   91 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKMS   91 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHhhc
Confidence            3445666667777777777777666532211                  1111112223345556667778888888888


Q ss_pred             ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       147 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      ++++|+..+.++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...++.+......
T Consensus        92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~  160 (169)
T d1ihga1          92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  160 (169)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888887777777766555

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.9e-16  Score=105.44  Aligned_cols=107  Identities=14%  Similarity=-0.038  Sum_probs=64.3

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhcCCC--HHHHHHHHHHHHh
Q 024712          104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAIEWLNKYLETFMAD--HDAWRELAEIYVS  178 (263)
Q Consensus       104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~  178 (263)
                      ++..+...+++++|.+.|++++..+|.++.+++++|.++...+   ++.+|+..+++++..+|.+  ..+|+.+|.+|..
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            3445555566666666666666666666666666666665433   3345666666666655443  3356666666666


Q ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024712          179 LQMYKQAAFCYEELILSQPTVPLYHLAYADVL  210 (263)
Q Consensus       179 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  210 (263)
                      .|++++|+.+|+++++++|++..+...++.+.
T Consensus        85 ~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            66666666666666666666666555555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.67  E-value=3.3e-16  Score=108.77  Aligned_cols=105  Identities=15%  Similarity=0.133  Sum_probs=71.8

Q ss_pred             HHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 024712          108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ----------GNFPTAIEWLNKYLETFMADHDAWRELAEIYV  177 (263)
Q Consensus       108 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  177 (263)
                      +.+.+.|++|+..|+++++.+|+++.++..+|.++...          +.+++|+..|+++++++|+++.+|+.+|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            34455566666666666666666666666666665533          34467777777777777777777777777776


Q ss_pred             hcc-----------cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712          178 SLQ-----------MYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (263)
Q Consensus       178 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (263)
                      .+|           .+++|+.+|+++++++|++..++..++.+...
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            654           36778888888888888887777777765433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.8e-14  Score=112.75  Aligned_cols=174  Identities=9%  Similarity=-0.061  Sum_probs=156.4

Q ss_pred             cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712           59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR  137 (263)
Q Consensus        59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  137 (263)
                      ..|....++...+......|+++.|..+|++++...|.+. .++..++......|+++.|..+|++++...|.+...+..
T Consensus        94 ~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~  173 (308)
T d2onda1          94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT  173 (308)
T ss_dssp             TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHH
Confidence            3667777888889999999999999999999999998764 578899999999999999999999999999999999988


Q ss_pred             HHHHHH-HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHh
Q 024712          138 RVAIAK-AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYT  212 (263)
Q Consensus       138 l~~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~  212 (263)
                      .+.... ..|+.+.|...|++++..+|.++..|...+......|+++.|..+|++++...|.++    .+|.........
T Consensus       174 ~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~  253 (308)
T d2onda1         174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN  253 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence            887754 468999999999999999999999999999999999999999999999999877554    467777887788


Q ss_pred             cCCCCcHHHHHHHHHHhhccCCC
Q 024712          213 LGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       213 ~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      .|+   .+.+.+.++++.+..|.
T Consensus       254 ~G~---~~~~~~~~~r~~~~~~~  273 (308)
T d2onda1         254 IGD---LASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HSC---HHHHHHHHHHHHHHTTT
T ss_pred             cCC---HHHHHHHHHHHHHHCcc
Confidence            899   99999999999998886

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.65  E-value=5e-15  Score=103.79  Aligned_cols=84  Identities=12%  Similarity=-0.095  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 024712           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  177 (263)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  177 (263)
                      ..++.++|.+|..+|++++|+..++++++.+|.+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+..
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999998888776


Q ss_pred             hccc
Q 024712          178 SLQM  181 (263)
Q Consensus       178 ~~g~  181 (263)
                      ..++
T Consensus       147 kl~~  150 (153)
T d2fbna1         147 KLKE  150 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.9e-16  Score=103.04  Aligned_cols=112  Identities=12%  Similarity=-0.067  Sum_probs=99.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CcHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Q 024712           68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK---GLWAEAEKAYSSLLEDNPLD--PVLHKRRVAIA  142 (263)
Q Consensus        68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~  142 (263)
                      ..++..+...+++++|.+.|++++..+|+++.+++.+|.++...   +++++|+..|++++..+|.+  ..+++.+|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            35677788899999999999999999999999999999999864   45678999999999988765  35899999999


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL  179 (263)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~  179 (263)
                      ...|++++|+.+|+++++++|++..+...++.+....
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988887766543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.64  E-value=1.4e-14  Score=103.14  Aligned_cols=97  Identities=11%  Similarity=-0.037  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 024712           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV  177 (263)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  177 (263)
                      ..++.++|.+|..+|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|++++.++|+++.++..++.+..
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  143 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK  143 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hcccHHH-HHHHHHHHHh
Q 024712          178 SLQMYKQ-AAFCYEELIL  194 (263)
Q Consensus       178 ~~g~~~~-A~~~~~~al~  194 (263)
                      ..+.+.+ ....|.+.++
T Consensus       144 ~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         144 KAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHh
Confidence            7766643 4455554443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=5.4e-15  Score=105.43  Aligned_cols=95  Identities=19%  Similarity=0.097  Sum_probs=86.9

Q ss_pred             HhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH
Q 024712           92 KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE  171 (263)
Q Consensus        92 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  171 (263)
                      ...|....++..+|.++...|++++|+..+.++++++|+++.++..+|.++..+|++++|+..|+++++++|++..+...
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~  150 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  150 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34566778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccHHHHH
Q 024712          172 LAEIYVSLQMYKQAA  186 (263)
Q Consensus       172 la~~~~~~g~~~~A~  186 (263)
                      ++.+........++.
T Consensus       151 l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         151 LLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999887776666543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.7e-15  Score=101.19  Aligned_cols=99  Identities=19%  Similarity=0.225  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH-------HHHHH
Q 024712          100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD-------AWREL  172 (263)
Q Consensus       100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~l  172 (263)
                      .+..+|..++..|+|++|+.+|+++++.+|+++.++.++|.++...|++++|+..++++++++|.++.       ++..+
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            34456666777777777777777777777777667777777777777777777777777766665533       34455


Q ss_pred             HHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712          173 AEIYVSLQMYKQAAFCYEELILSQPT  198 (263)
Q Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~  198 (263)
                      |.++...+++++|+.+|++++..+|+
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            56666666666666666666666553

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.2e-15  Score=100.07  Aligned_cols=99  Identities=14%  Similarity=0.038  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH-------HHHHH
Q 024712          134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL-------YHLAY  206 (263)
Q Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l  206 (263)
                      .+..+|..++..|++++|+.+|.++++++|.++.++.++|.+|..+|+|++|+..++++++++|.++.       ++..+
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999887754       56677


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          207 ADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       207 a~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      |.++...++   +++|+.+|.+++..+|.
T Consensus        86 g~~~~~~~~---~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          86 GNSYFKEEK---YKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHTTC---HHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHhCC---HHHHHHHHHHHHhcCCC
Confidence            888888888   99999999999988774

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.60  E-value=4e-15  Score=103.20  Aligned_cols=111  Identities=12%  Similarity=-0.021  Sum_probs=96.9

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----------CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712           75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK----------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA  144 (263)
Q Consensus        75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  144 (263)
                      -+.+.+++|+..|+++++.+|+++.++..+|.++...          +.+++|+..|+++++++|+++.+++++|.++..
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~   87 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence            3456799999999999999999999999999998754          556899999999999999999999999999988


Q ss_pred             cCC-----------hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHH
Q 024712          145 QGN-----------FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA  185 (263)
Q Consensus       145 ~g~-----------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A  185 (263)
                      +|+           +++|+.+|+++++++|++..++..|+.+....+.+.++
T Consensus        88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          88 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            764           68999999999999999999998888886555544443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-14  Score=120.49  Aligned_cols=165  Identities=13%  Similarity=0.024  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHHHhCC--CcH-HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 024712           80 LDVAKDCIKVLQKQFP--ESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN  156 (263)
Q Consensus        80 ~~~A~~~~~~~~~~~p--~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  156 (263)
                      +..++..++.......  +.. .....++.+....+.|+.|+..+++++..+|.+...+..+|..+...|++++|+..+.
T Consensus        65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  144 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS  144 (497)
T ss_dssp             THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CC
T ss_pred             HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence            4566777777665432  222 2233456666777888999999999999999999899999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCc
Q 024712          157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK  236 (263)
Q Consensus       157 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~  236 (263)
                      +++..+|.  .++..+|.++...|++++|+.+|++++.++|+++.++.++|.++...|+   ..+|+.+|.+++..+|+ 
T Consensus       145 ~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~---~~~A~~~y~ral~~~~~-  218 (497)
T d1ya0a1         145 SSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD---HLTTIFYYCRSIAVKFP-  218 (497)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC---HHHHHHHHHHHHSSSBC-
T ss_pred             HHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCC-
Confidence            99887764  6788899999999999999999999999999999999999999999999   99999999999999885 


Q ss_pred             chhHHHhHHHHHhh
Q 024712          237 NTKALFGICLVMFV  250 (263)
Q Consensus       237 ~~~~~~~l~~~~~~  250 (263)
                      ...++.+|.....+
T Consensus       219 ~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         219 FPAASTNLQKALSK  232 (497)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            77777777766544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=3.3e-14  Score=110.25  Aligned_cols=197  Identities=14%  Similarity=0.059  Sum_probs=146.9

Q ss_pred             cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHH
Q 024712           36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLE  109 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~  109 (263)
                      .++.+.++......+.-.. .....++....+..+|.++...|++++|+..+++++...+..      ..++..+|.++.
T Consensus        50 ~~~~~~A~~~y~kA~~~~~-~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  128 (290)
T d1qqea_          50 RKELNLAGDSFLKAADYQK-KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE  128 (290)
T ss_dssp             TTCTHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHh
Confidence            4455666655554443200 011123467789999999999999999999999999876533      456778888886


Q ss_pred             H-cCcHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-------HHHHHHHHH
Q 024712          110 A-KGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-------DAWRELAEI  175 (263)
Q Consensus       110 ~-~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~  175 (263)
                      . .|++++|+..|++++.+.+..      ..++..+|.++..+|++++|+..|++++...|.+.       ..+...|.+
T Consensus       129 ~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (290)
T d1qqea_         129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC  208 (290)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHH
Confidence            5 599999999999998764321      34688899999999999999999999999887763       456788999


Q ss_pred             HHhcccHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          176 YVSLQMYKQAAFCYEELILSQPTVPL-----YHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       176 ~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      +...|++..|...++++++.+|..+.     ....+..++.. ++.+.+++|+..|.++.+++|
T Consensus       209 ~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~-~d~e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         209 QLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE-GDSEQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             HHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT-TCTTTHHHHHHHHTTSSCCCH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhcCH
Confidence            99999999999999999999986544     33445555443 444459999999999888876

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=7.2e-12  Score=98.46  Aligned_cols=193  Identities=11%  Similarity=-0.067  Sum_probs=115.9

Q ss_pred             hccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------cHHHHHHHHHH
Q 024712           34 LKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE------SKRVGRLEGIL  107 (263)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~a~~  107 (263)
                      ...++.+.++......+..  .+....+....++..+|.++...|++++|+..+++++...|.      ....+..++.+
T Consensus        23 ~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  100 (366)
T d1hz4a_          23 INDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI  100 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            4555677777777666654  111111123456677788888888888888888887775432      22345566777


Q ss_pred             HHHcCcHHHHHHHHHHHHhcCC-----C---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC--------------
Q 024712          108 LEAKGLWAEAEKAYSSLLEDNP-----L---DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD--------------  165 (263)
Q Consensus       108 ~~~~~~~~~A~~~~~~~~~~~p-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~--------------  165 (263)
                      +...|++..|...+.+++...+     .   ....+..+|.++...|+++.+...+.+++...+..              
T Consensus       101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (366)
T d1hz4a_         101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ  180 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence            7777777777777777765321     1   12345566777777777777777777666543321              


Q ss_pred             --------------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHH
Q 024712          166 --------------------------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----PLYHLAYADV  209 (263)
Q Consensus       166 --------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~  209 (263)
                                                      ..++..++.++...|++++|...+++++...|.+    ...+..+|.+
T Consensus       181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~  260 (366)
T d1hz4a_         181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA  260 (366)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence                                            1223344555556666666666666666555433    2244556666


Q ss_pred             HHhcCCCCcHHHHHHHHHHhhc
Q 024712          210 LYTLGGVDNILLAKKYYASTID  231 (263)
Q Consensus       210 ~~~~g~~~~~~~A~~~~~~al~  231 (263)
                      +...|+   +++|...+++++.
T Consensus       261 ~~~~g~---~~~A~~~~~~al~  279 (366)
T d1hz4a_         261 QILLGE---FEPAEIVLEELNE  279 (366)
T ss_dssp             HHHTTC---HHHHHHHHHHHHH
T ss_pred             HHHcCC---HHHHHHHHHHHHH
Confidence            666666   6666666666653

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.8e-13  Score=113.79  Aligned_cols=143  Identities=11%  Similarity=-0.043  Sum_probs=99.0

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 024712           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT  150 (263)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  150 (263)
                      +......+.|+.|+..+.+.....|.+...+..+|..+...|++++|+..+++++..+|  ..++..+|.++...|++++
T Consensus        93 ~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~  170 (497)
T d1ya0a1          93 LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQ  170 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHH
Confidence            34444567788888888888888899999999999999999999999999999988765  4678889999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712          151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG  215 (263)
Q Consensus       151 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  215 (263)
                      |+.+|+++++++|++..++..+|.++...|++.+|+.+|.+++...|.++.++.+|+.++....+
T Consensus       171 A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         171 AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999988876543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.1e-11  Score=97.34  Aligned_cols=169  Identities=15%  Similarity=0.012  Sum_probs=141.9

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-----RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------  131 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------  131 (263)
                      ...+....|.+++..|++++|+.+++++++..|++.     .++..+|.++...|++++|+..|++++...+..      
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence            455666689999999999999999999999998653     467789999999999999999999999864432      


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----
Q 024712          132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----  199 (263)
Q Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----  199 (263)
                      ...+..++.++...|++..+...+.+++...+.        ....+..+|.++...|+++.+...+.+++...+..    
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  170 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  170 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence            246778899999999999999999999876432        13466789999999999999999999999876643    


Q ss_pred             -HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712          200 -PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       200 -~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~  234 (263)
                       ...+...+.++...++   +.++...+.++....+
T Consensus       171 ~~~~~~~~~~~~~~~~~---~~~a~~~~~~a~~~~~  203 (366)
T d1hz4a_         171 QLQCLAMLIQCSLARGD---LDNARSQLNRLENLLG  203 (366)
T ss_dssp             GHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHH
Confidence             3467788999999999   9999999998877644

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.2e-12  Score=83.57  Aligned_cols=79  Identities=10%  Similarity=0.029  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 024712          133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLA  205 (263)
Q Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  205 (263)
                      +-.+.+|.+++..|++.+|+.+|++++++.|.+       ..++..+|.++...|++++|+.+|+++++++|+++.++.+
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            344566667777777777777777766665433       4566677777777777777777777777777777777766


Q ss_pred             HHHHHH
Q 024712          206 YADVLY  211 (263)
Q Consensus       206 la~~~~  211 (263)
                      ++.+..
T Consensus        86 l~~~~~   91 (95)
T d1tjca_          86 LKYFEY   91 (95)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.37  E-value=1.1e-12  Score=91.91  Aligned_cols=93  Identities=16%  Similarity=0.030  Sum_probs=61.0

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--------
Q 024712          105 GILLEAKGLWAEAEKAYSSLLEDNPLDP------------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--------  164 (263)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~~~~~~p~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--------  164 (263)
                      |..++..|+|++|+..|++++++.|..+            .++.++|.++..+|++++|+..+++++.+.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            5556666666666666666666554432            35667777777777777777777777765432        


Q ss_pred             ---CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712          165 ---DHDAWRELAEIYVSLQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       165 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  197 (263)
                         ...+++.+|.+|..+|++++|+..|++++++.|
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence               123566677777777777777777777776644

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.1e-12  Score=81.00  Aligned_cols=80  Identities=14%  Similarity=-0.038  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHH
Q 024712           98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR  170 (263)
Q Consensus        98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  170 (263)
                      ++-.+.+|.++...|+|++|+.+|++++...|.+       ..++.++|.++...|++++|+..++++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            3445567777777777777777777776654332       456777777777777777777777777777777777777


Q ss_pred             HHHHHHH
Q 024712          171 ELAEIYV  177 (263)
Q Consensus       171 ~la~~~~  177 (263)
                      +++.+..
T Consensus        85 Nl~~~~~   91 (95)
T d1tjca_          85 NLKYFEY   91 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.32  E-value=2.1e-12  Score=90.39  Aligned_cols=96  Identities=14%  Similarity=0.039  Sum_probs=83.8

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------
Q 024712          137 RRVAIAKAQGNFPTAIEWLNKYLETFMAD------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT------  198 (263)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------  198 (263)
                      ..|..++..|++++|+..|++++++.|..            ..+|.++|.+|..+|++++|+..+++++.+.|.      
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            44888899999999999999999998765            357889999999999999999999999976442      


Q ss_pred             -----CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          199 -----VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       199 -----~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                           ...++.++|.+|..+|+   +++|+..|++++++.|.
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~---~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHhhHH
Confidence                 13367899999999999   99999999999998664

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.31  E-value=2.5e-12  Score=97.59  Aligned_cols=126  Identities=13%  Similarity=0.049  Sum_probs=93.5

Q ss_pred             HHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHH
Q 024712          107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA  186 (263)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~  186 (263)
                      -.+..|++++|+..++++++.+|.+...+..++.++...|++++|+..++++++.+|++..++..++.++...+..+++.
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            34556888888888888888888888888888888888888888888888888888888888888887777777666665


Q ss_pred             HHHHHHHh-hCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712          187 FCYEELIL-SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG  235 (263)
Q Consensus       187 ~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~  235 (263)
                      ..+.+... ..|.....+...+.++...|+   .++|...+.++.+..|.
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd---~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQD---YEQVSELALQIEELRQE  131 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCCC
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCC
Confidence            54433222 234445556667777888888   88888888888887775

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.31  E-value=1.5e-12  Score=98.78  Aligned_cols=133  Identities=11%  Similarity=-0.095  Sum_probs=112.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 024712           71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT  150 (263)
Q Consensus        71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  150 (263)
                      +...+..|++++|+..++++++.+|+++.++..++.++...|++++|+..++++++.+|++...+..++.++...+...+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999988877766655


Q ss_pred             HHHHHHHHHH-hcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH
Q 024712          151 AIEWLNKYLE-TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH  203 (263)
Q Consensus       151 A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  203 (263)
                      +.....+... ..|.....+...+..+...|++++|+..+.++.+..|..+..+
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence            5444333222 2455556677788999999999999999999999999876543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.29  E-value=2.9e-09  Score=80.56  Aligned_cols=177  Identities=13%  Similarity=0.045  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712           64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVLHKRRV  139 (263)
Q Consensus        64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  139 (263)
                      +..+..+|..+...+++.+|+++|+++.+.  +++.+.+.+|.+|..    ..++..|..+++.+...  .++.+...+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccc
Confidence            567888999999999999999999999764  578888999999987    66888999998888764  4666677777


Q ss_pred             HHHHH----cCChhHHHHHHHHHHHhc----------------------------------CCCHHHHHHHHHHHHh---
Q 024712          140 AIAKA----QGNFPTAIEWLNKYLETF----------------------------------MADHDAWRELAEIYVS---  178 (263)
Q Consensus       140 ~~~~~----~g~~~~A~~~~~~~l~~~----------------------------------p~~~~~~~~la~~~~~---  178 (263)
                      .++..    .++.+.|...++.+....                                  +.+...+..+|.++..   
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~  157 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG  157 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCC
Confidence            76654    345667777777655432                                  3345566677777765   


Q ss_pred             -cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712          179 -LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF  249 (263)
Q Consensus       179 -~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~  249 (263)
                       ..+...+..+++.+.+  +.++.+...+|.++... |...++++|+.+|+++.+..   ++.+.+.|..++.
T Consensus       158 ~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~  225 (265)
T d1ouva_         158 TPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY  225 (265)
T ss_dssp             SCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             cccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence             3456667777777664  45788888999888761 21223899999999998874   4566666666654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=5.4e-11  Score=84.83  Aligned_cols=118  Identities=10%  Similarity=0.032  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712           63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA  142 (263)
Q Consensus        63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  142 (263)
                      .+..+...|......|++++|+..|.+++...++........       +.+     .......+.+....++..++.++
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~w-----~~~~r~~l~~~~~~a~~~la~~~   77 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQF-----VEPFATALVEDKVLAHTAKAEAE   77 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------STT-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555566555555555555555443221100       110     00111111222234445555555


Q ss_pred             HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712          143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL  192 (263)
Q Consensus       143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  192 (263)
                      ...|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus        78 ~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          78 IACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=9.9e-11  Score=83.43  Aligned_cols=132  Identities=15%  Similarity=0.037  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712           99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  178 (263)
Q Consensus        99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  178 (263)
                      ..+...|......|++++|+..|.+++.+.+........       .+.+     .......+.+....++..++.++..
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-------~~~w-----~~~~r~~l~~~~~~a~~~la~~~~~   79 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQF-----VEPFATALVEDKVLAHTAKAEAEIA   79 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc-------chHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778999999999999999999999998776432111       1111     2223334455567889999999999


Q ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh-------hccCCCcchhHHHhHH
Q 024712          179 LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST-------IDLTGGKNTKALFGIC  245 (263)
Q Consensus       179 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a-------l~~~~~~~~~~~~~l~  245 (263)
                      .|++++|+.++++++..+|.+..+|..++.++...|+   +.+|+..|+++       +.+.|+.....++.-+
T Consensus        80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr---~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~i  150 (179)
T d2ff4a2          80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR---QSDALGAYRRVKTTLADDLGIDPGPTLRALNERI  150 (179)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999   99999999998       6678874455554433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.96  E-value=3.6e-07  Score=68.63  Aligned_cols=164  Identities=11%  Similarity=-0.023  Sum_probs=120.6

Q ss_pred             hHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCCCCHHH
Q 024712           63 VWTLYEQVSIAAMD----CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVL  134 (263)
Q Consensus        63 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~  134 (263)
                      .+.....++..+..    ..+.+.|...++.+....+  ..+...++..+..    ......|...+.+...  +.+...
T Consensus        69 ~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~  144 (265)
T d1ouva_          69 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDG  144 (265)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHH
T ss_pred             ccchhhccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccch
Confidence            34444555555543    4577888888888877544  4445556666554    3456777777777665  566778


Q ss_pred             HHHHHHHHHH----cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024712          135 HKRRVAIAKA----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAY  206 (263)
Q Consensus       135 ~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l  206 (263)
                      +..+|.++..    ..+...+..+++.+.+  +.++.+.+.+|.++..    ..++++|+.+|+++.+.  .++.+++.|
T Consensus       145 ~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~L  220 (265)
T d1ouva_         145 CTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNL  220 (265)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             hhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHH
Confidence            8889999886    3456677777777764  5789999999999987    67899999999999887  468899999


Q ss_pred             HHHHHh-cCCCCcHHHHHHHHHHhhccCC
Q 024712          207 ADVLYT-LGGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       207 a~~~~~-~g~~~~~~~A~~~~~~al~~~~  234 (263)
                      |.+|.. .|-..++++|..+|+++....+
T Consensus       221 G~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         221 GAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            999986 2212238999999999988865

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.67  E-value=4.9e-07  Score=60.57  Aligned_cols=115  Identities=21%  Similarity=0.095  Sum_probs=78.5

Q ss_pred             CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cccHHHHHH
Q 024712          112 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAF  187 (263)
Q Consensus       112 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~  187 (263)
                      .++++|+.+|+++.+..  ++.+...++.  ....+.++|+.+++++.+.  .++.+.+.||.+|..    ..++++|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            35677777777776653  3344444443  2345777888888887653  677788888888765    456788888


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHhhccCC
Q 024712          188 CYEELILSQPTVPLYHLAYADVLYTL-GGVDNILLAKKYYASTIDLTG  234 (263)
Q Consensus       188 ~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~~~~A~~~~~~al~~~~  234 (263)
                      +|+++.+.  .++.+...||.+|..- |-..+.++|..+|+++.+...
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            88888764  4677888888887762 212238888888888877643

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=5.2e-07  Score=58.57  Aligned_cols=73  Identities=8%  Similarity=-0.109  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH
Q 024712          132 PVLHKRRVAIAKAQG---NFPTAIEWLNKYLETFMADH-DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL  204 (263)
Q Consensus       132 ~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  204 (263)
                      ..+.+.+|.++.+..   +..+|+..++.++..+|.+. +.++.||..|+.+|+|++|..+++++++++|++..+..
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            445566666665443   33456666666666666543 56666666666666666666666666666666655543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.57  E-value=1.7e-06  Score=57.80  Aligned_cols=112  Identities=12%  Similarity=-0.131  Sum_probs=91.7

Q ss_pred             CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHH
Q 024712           78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPTAIE  153 (263)
Q Consensus        78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~  153 (263)
                      .|+++|+.+|+++.+..  ++.+...++.  ....++++|+.+++++.+.  .++.+.+.+|.+|..    ..++++|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            47889999999998764  4555555553  3457899999999999874  678899999999886    457899999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCC
Q 024712          154 WLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQP  197 (263)
Q Consensus       154 ~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p  197 (263)
                      +|+++.+.  .++.+.+.||.+|..    ..++.+|+.+|+++.+...
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            99999865  678899999999987    4689999999999987653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=3.4e-07  Score=59.43  Aligned_cols=73  Identities=7%  Similarity=-0.099  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHc---CcHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHH
Q 024712           98 KRVGRLEGILLEAK---GLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR  170 (263)
Q Consensus        98 ~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  170 (263)
                      +...+.+|.++...   .+.++|+.+++.++..+|.+. ++++.+|..+++.|++++|..+++++++++|++..+..
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            34455555555543   234456666666665555443 55566666666666666666666666666666655543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.13  Score=40.60  Aligned_cols=153  Identities=10%  Similarity=-0.034  Sum_probs=90.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP  149 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  149 (263)
                      ++......+..+.+...+........+........+ .....+++..+...+..+-..........+-+|..+...|+.+
T Consensus       258 ~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~  336 (450)
T d1qsaa1         258 VAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREA  336 (450)
T ss_dssp             HHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChh
Confidence            333444456667777776666554444333333333 3455677777777776654332333556677788888888888


Q ss_pred             HHHHHHHHHHHhcCCC-----------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 024712          150 TAIEWLNKYLETFMAD-----------------------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP  200 (263)
Q Consensus       150 ~A~~~~~~~l~~~p~~-----------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  200 (263)
                      +|...|..+... ++.                             ...-+..+..++..|+...|...+..++..  .++
T Consensus       337 ~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~  413 (450)
T d1qsaa1         337 EAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSK  413 (450)
T ss_dssp             HHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCH
T ss_pred             hHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCH
Confidence            888877776532 110                             001123455566677777777766666543  235


Q ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712          201 LYHLAYADVLYTLGGVDNILLAKKYYAST  229 (263)
Q Consensus       201 ~~~~~la~~~~~~g~~~~~~~A~~~~~~a  229 (263)
                      .-...+|.+....|.   ++.|+....++
T Consensus       414 ~~~~~la~lA~~~g~---~~~aI~a~~~~  439 (450)
T d1qsaa1         414 TEQAQLARYAFNNQW---WDLSVQATIAG  439 (450)
T ss_dssp             HHHHHHHHHHHHTTC---HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCC---hhHHHHHHHHH
Confidence            555666777777777   77777666665

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.22  E-value=0.41  Score=36.07  Aligned_cols=126  Identities=13%  Similarity=-0.006  Sum_probs=49.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 024712           70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP  149 (263)
Q Consensus        70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  149 (263)
                      .|..+.+.|.++.|..+|...    ++.    -.+..++...+++..|.+.+.+.     +++.+|..+...+.......
T Consensus        20 i~~~c~~~~lye~A~~lY~~~----~d~----~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~   86 (336)
T d1b89a_          20 VGDRCYDEKMYDAAKLLYNNV----SNF----GRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR   86 (336)
T ss_dssp             ---------CTTTHHHHHHHT----TCH----HHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHhC----CCH----HHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHH
Confidence            444455555555555555421    111    11223444555555555554443     23444444444444443332


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712          150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT  212 (263)
Q Consensus       150 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  212 (263)
                      -+.. ....   ...+++-...+...|...|.+++.+.+++.++...+.++..+..++.+|.+
T Consensus        87 la~i-~~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_          87 LAQM-CGLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHHH-TTTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHH-HHHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence            2100 0000   111223333344444455555555555555554444455555555554444

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.33  E-value=0.73  Score=34.67  Aligned_cols=42  Identities=24%  Similarity=0.271  Sum_probs=20.3

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712          137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS  178 (263)
Q Consensus       137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  178 (263)
                      .....+...|.+++.+.+++.++...+.+...+..++.+|.+
T Consensus       104 ~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_         104 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence            344444445555555555555544444444444444444433

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=4.7  Score=31.20  Aligned_cols=123  Identities=11%  Similarity=0.002  Sum_probs=82.2

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH----HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712          105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV----AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ  180 (263)
Q Consensus       105 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  180 (263)
                      +..-....+.+.|...+.......+.....+....    ..+...+..+.+...+........+.......++ .....+
T Consensus       221 ~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~  299 (450)
T d1qsaa1         221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTG  299 (450)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHT
T ss_pred             HHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcC
Confidence            33333446788888888887776666554333322    2223456677787777777655444433333344 455678


Q ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712          181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID  231 (263)
Q Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~  231 (263)
                      ++..+...+...-......+...+-+|..+...|+   .+.|...|..+..
T Consensus       300 ~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~---~~~A~~~~~~~a~  347 (450)
T d1qsaa1         300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR---EAEAKEILHQLMQ  347 (450)
T ss_dssp             CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCC---hhhHHHHHHHHhc
Confidence            99988888876543333446788999999999999   9999999999864