Citrus Sinensis ID: 024723

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MPLPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MPLPVSLWQLHYSTiawsasvrkgvqpdvaygykaktaagTVFNFFSALGDVAFAYAGHNVVLEIQatipstpekpskgpmwrGVVVAYIVVALCYFPVALIGYWMFGNKVEDNIllslekptwlIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKklnfsptrLLRFVVRNLYVASTMFIgitfpffggllgffggfafapttyflPCIIWLAiykprkyslsWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
Flexible Loop (DISEMBL)
MPLPVSLWQLHYSTiawsasvrkGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIpstpekpskgpMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
Low Complexity Region (SEG)
MPLPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMfigitfpffggllgffggfafaptTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
Disordered region (IsUnstruct)
****VSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATI**********PMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKF**
Disordered Region (DISOPRED)
MPLPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPS*P**PSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
Disordered Region (DISEMBL)
MPLPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
Disordered Region (DISPRO)
MPLPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPLPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
Q9FKS8	446	Lysine histidine transpor	yes	no	0.992	0.585	0.812	1e-124
Q9C733	453	Lysine histidine transpor	no	no	0.992	0.576	0.735	1e-107
Q9LRB5	441	Lysine histidine transpor	no	no	0.992	0.591	0.708	6e-98
O22719	451	Lysine histidine transpor	no	no	0.973	0.567	0.613	1e-93
Q9SR44	441	Lysine histidine transpor	no	no	0.992	0.591	0.720	2e-93
Q9SS86	455	Lysine histidine transpor	no	no	0.950	0.549	0.615	1e-89
Q9C6M2	440	Lysine histidine transpor	no	no	0.992	0.593	0.578	4e-79
Q9C9J0	448	Lysine histidine transpor	no	no	0.958	0.562	0.573	2e-68
Q9SX98	519	Lysine histidine transpor	no	no	0.950	0.481	0.339	2e-35
O80592	475	Amino acid permease 8 OS=	no	no	0.844	0.467	0.337	5e-30

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score =  444 bits (1141), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/261 (81%), Positives = 233/261 (89%)

Query: 3   LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
           L  ++  L YSTIAW++S  KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVV
Sbjct: 186 LAAAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVV 245

Query: 63  LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
           LEIQATIPSTPEKPSKGPMWRGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP
Sbjct: 246 LEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKP 305

Query: 123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMF 182
            WLI  AN FVV+HVIGSYQIYAMPVFDM+ETLLVKKLNF PT  LRF VRN YVA+TMF
Sbjct: 306 AWLIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMF 365

Query: 183 IGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
           +G+TFPFFGGLL FFGGFAFAPTTYFLPC+IWLAIYKP+KYSLSW  NW+CIV GL LM+
Sbjct: 366 VGMTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMV 425

Query: 243 LSPIGGLRQIILQAKDYKFYS 263
           LSPIGGLR I++QAK YKFYS
Sbjct: 426 LSPIGGLRTIVIQAKGYKFYS 446

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2

 Score =  387 bits (995), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/261 (73%), Positives = 222/261 (85%)

Query: 3   LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
           L  ++  L YSTIAW+A+  KGVQ DV YGYK+ T A TV +FF+ LG +AFAYAGHNVV
Sbjct: 193 LVAAVMSLSYSTIAWTATAAKGVQEDVQYGYKSGTTASTVLSFFTGLGGIAFAYAGHNVV 252

Query: 63  LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
           LEIQATIPSTP  PSKGPMWRGVVVAY+VVALCYFPVAL+GY +FGN V DN+L+SLE P
Sbjct: 253 LEIQATIPSTPSNPSKGPMWRGVVVAYVVVALCYFPVALVGYGVFGNAVLDNVLMSLETP 312

Query: 123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMF 182
            W I  AN FVV+HVIGSYQI+AMPVFDM+ET LVKKLNF P+ +LRF+VRN+YVA TMF
Sbjct: 313 VWAIATANLFVVMHVIGSYQIFAMPVFDMVETFLVKKLNFKPSTVLRFIVRNVYVALTMF 372

Query: 183 IGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
           IGI  PFFGGLL FFGGFAFAPT+YFLPCI+WL IYKP+++SLSW  NW+CIVLG+ LMI
Sbjct: 373 IGIMIPFFGGLLAFFGGFAFAPTSYFLPCIMWLLIYKPKRFSLSWWTNWVCIVLGVVLMI 432

Query: 243 LSPIGGLRQIILQAKDYKFYS 263
           LS IGGLRQII+Q+KDY F+S
Sbjct: 433 LSSIGGLRQIIIQSKDYSFFS 453

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score =  357 bits (915), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 185/261 (70%), Positives = 220/261 (84%)

Query: 3   LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
           L  ++  L YSTIAW+ASV KGV PDV Y  +A T  G VFNF +ALGDVAFAYAGHNVV
Sbjct: 181 LAAAVMSLTYSTIAWAASVHKGVHPDVDYSPRASTDVGKVFNFLNALGDVAFAYAGHNVV 240

Query: 63  LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
           LEIQATIPSTPE PSK PMWRGV+VAYIVVA+CYFPVA +GY++FGN V+DNIL++LEKP
Sbjct: 241 LEIQATIPSTPEMPSKVPMWRGVIVAYIVVAICYFPVAFLGYYIFGNSVDDNILITLEKP 300

Query: 123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMF 182
            WLI MAN FVV+HVIGSYQI+AMPVFDM+ET+LVKK+NF+P+  LRF+ R+LYVA TM 
Sbjct: 301 IWLIAMANMFVVIHVIGSYQIFAMPVFDMLETVLVKKMNFNPSFKLRFITRSLYVAFTMI 360

Query: 183 IGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
           + I  PFFGGLLGFFGGFAFAPTTY+LPCI+WL + KP+++ LSW  NW CI++G+ L I
Sbjct: 361 VAICVPFFGGLLGFFGGFAFAPTTYYLPCIMWLVLKKPKRFGLSWTANWFCIIVGVLLTI 420

Query: 243 LSPIGGLRQIILQAKDYKFYS 263
           L+PIGGLR II+ AK YKF+S
Sbjct: 421 LAPIGGLRTIIINAKTYKFFS 441

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2

 Score =  343 bits (879), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 157/256 (61%), Positives = 202/256 (78%)

Query: 3   LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
           L  ++  + YSTIAW AS+ KGV  +V YGYK +        F  ALG++AFAYAGHNVV
Sbjct: 188 LVAAVMSMSYSTIAWVASLTKGVANNVEYGYKRRNNTSVPLAFLGALGEMAFAYAGHNVV 247

Query: 63  LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
           LEIQATIPSTPE PSK PMW+G +VAYI+VA CYFPVAL+G+W FGN VE+NIL +L  P
Sbjct: 248 LEIQATIPSTPENPSKRPMWKGAIVAYIIVAFCYFPVALVGFWTFGNNVEENILKTLRGP 307

Query: 123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMF 182
             LI++AN FV++H++GSYQ+YAMPVFDMIE++++KK +FSPTR+LRF +R  +VA+TM 
Sbjct: 308 KGLIIVANIFVIIHLMGSYQVYAMPVFDMIESVMIKKWHFSPTRVLRFTIRWTFVAATMG 367

Query: 183 IGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
           I +  P F  LL FFGGF FAPTTYF+PCIIWL + KP+++SLSWCINWICI+LG+ +MI
Sbjct: 368 IAVALPHFSALLSFFGGFIFAPTTYFIPCIIWLILKKPKRFSLSWCINWICIILGVLVMI 427

Query: 243 LSPIGGLRQIILQAKD 258
           ++PIGGL +++   K 
Sbjct: 428 IAPIGGLAKLMNALKQ 443

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1

 Score =  342 bits (876), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 188/261 (72%), Positives = 221/261 (84%)

Query: 3   LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
           L  ++  L YSTIAW+ SV+KGV P+V Y  +A T +G VFNF +ALGDVAFAYAGHNVV
Sbjct: 181 LAAAVMSLSYSTIAWATSVKKGVHPNVDYSSRASTTSGNVFNFLNALGDVAFAYAGHNVV 240

Query: 63  LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
           LEIQATIPSTPEKPSK  MW+GVVVAYIVVA+CYFPVA + Y++FGN V+DNIL++LEKP
Sbjct: 241 LEIQATIPSTPEKPSKIAMWKGVVVAYIVVAICYFPVAFVCYYIFGNSVDDNILMTLEKP 300

Query: 123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMF 182
            WLI +AN FVVVHVIGSYQIYAMPVFDM+ET LVKK+ F+P+  LRF+ R LYVA TMF
Sbjct: 301 IWLIAIANAFVVVHVIGSYQIYAMPVFDMLETFLVKKMMFAPSFKLRFITRTLYVAFTMF 360

Query: 183 IGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
           + I  PFFGGLLGFFGGFAFAPTTY+LPCI+WL I KP+KY LSWCINW CIV+G+ L I
Sbjct: 361 VAICIPFFGGLLGFFGGFAFAPTTYYLPCIMWLCIKKPKKYGLSWCINWFCIVVGVILTI 420

Query: 243 LSPIGGLRQIILQAKDYKFYS 263
           L+PIGGLR II+ AK+Y+F+S
Sbjct: 421 LAPIGGLRTIIISAKNYEFFS 441

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2

 Score =  329 bits (844), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 155/252 (61%), Positives = 202/252 (80%), Gaps = 2/252 (0%)

Query: 3   LPVSLWQLHYSTIAWSASVRKGVQP-DVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNV 61
           L  ++  + YSTIAW AS+RKG     V YGY+ +T +     F SALG++AFAYAGHNV
Sbjct: 187 LVAAVMSVSYSTIAWVASLRKGATTGSVEYGYRKRTTS-VPLAFLSALGEMAFAYAGHNV 245

Query: 62  VLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEK 121
           VLEIQATIPSTPE PSK PMW+G VVAYI+VA CYFPVAL+G+  FGN VE++IL SL K
Sbjct: 246 VLEIQATIPSTPENPSKRPMWKGAVVAYIIVAFCYFPVALVGFKTFGNSVEESILESLTK 305

Query: 122 PTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTM 181
           PT L+++AN FVV+H++GSYQ+YAMPVFDMIE+++++  +FSPTR+LRF +R  +VA+TM
Sbjct: 306 PTALVIVANMFVVIHLLGSYQVYAMPVFDMIESVMIRIWHFSPTRVLRFTIRWTFVAATM 365

Query: 182 FIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLM 241
            I +  P++  LL FFGGF FAPTTYF+PCI+WL + KP+++SLSWC+NW CI+ GL LM
Sbjct: 366 GIAVGLPYYSALLSFFGGFVFAPTTYFIPCIMWLILKKPKRFSLSWCMNWFCIIFGLVLM 425

Query: 242 ILSPIGGLRQII 253
           I++PIGGL ++I
Sbjct: 426 IIAPIGGLAKLI 437

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1

 Score =  294 bits (753), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 151/261 (57%), Positives = 197/261 (75%)

Query: 3   LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
           L  ++  L YSTIAW  S+  G  PDV+Y YKA       F  F+ALG ++FA+AGH V 
Sbjct: 180 LAAAVMSLCYSTIAWGGSIAHGRVPDVSYDYKATNPGDFTFRVFNALGQISFAFAGHAVA 239

Query: 63  LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
           LEIQAT+PSTPE+PSK PMW+GV+ AY+V A+CYFPVALI YW FG  V+DN+L++L++P
Sbjct: 240 LEIQATMPSTPERPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQDVDDNVLMNLQRP 299

Query: 123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMF 182
            WLI  AN  VVVHVIGSYQ++AMPVFD++E ++V K  F    +LRF  R +YVA T+F
Sbjct: 300 AWLIAAANLMVVVHVIGSYQVFAMPVFDLLERMMVNKFGFKHGVVLRFFTRTIYVAFTLF 359

Query: 183 IGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
           IG++FPFFG LLGFFGGF FAPT++FLP I+WL I KPR++S++W +NWI I++G+ +M+
Sbjct: 360 IGVSFPFFGDLLGFFGGFGFAPTSFFLPSIMWLIIKKPRRFSVTWFVNWISIIVGVFIML 419

Query: 243 LSPIGGLRQIILQAKDYKFYS 263
            S IGGLR II  +  Y FY+
Sbjct: 420 ASTIGGLRNIIADSSTYSFYA 440

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2

 Score =  259 bits (661), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 145/253 (57%), Positives = 186/253 (73%), Gaps = 1/253 (0%)

Query: 12  YSTIAWSASVRKGVQPD-VAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIP 70
           YS IA  AS+ KG +     YG +  T A  VF+ F+ +G +AFA+AGH+VVLEIQATIP
Sbjct: 196 YSMIASVASIAKGTEHRPSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVLEIQATIP 255

Query: 71  STPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMAN 130
           STPE PSK PMW+GVVVAYI+V +CY  VA+ GYW FG  VED++L+SLE+P WLI  AN
Sbjct: 256 STPEVPSKKPMWKGVVVAYIIVIICYLFVAISGYWAFGAHVEDDVLISLERPAWLIAAAN 315

Query: 131 FFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFF 190
           F V +HVIGSYQ++AM VFD IE+ LVK L F+P+  LR V R+ YVA    + +  PFF
Sbjct: 316 FMVFIHVIGSYQVFAMIVFDTIESYLVKTLKFTPSTTLRLVARSTYVALICLVAVCIPFF 375

Query: 191 GGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLR 250
           GGLLGFFGG  F+ T+YFLPCIIWL + +P+++S  W  +W+ IV G+ + IL+PIGG+R
Sbjct: 376 GGLLGFFGGLVFSSTSYFLPCIIWLIMKRPKRFSAHWWCSWVAIVTGISIAILAPIGGMR 435

Query: 251 QIILQAKDYKFYS 263
            IIL A+ YK +S
Sbjct: 436 HIILSARTYKLFS 448

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 138/259 (53%), Gaps = 9/259 (3%)

Query: 12  YSTIAWSASVRKGVQPDVAYG-YKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIP 70
           YST+ W  SV +     ++Y      + +G++F   +ALG +AFA+ GHN+VLEIQ+T+P
Sbjct: 258 YSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFAVLNALGIIAFAFRGHNLVLEIQSTMP 317

Query: 71  STPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSL-------EKPT 123
           ST + P+  PMWRG  ++Y ++ALC FP+++ G+W +GN +    +L+        + P 
Sbjct: 318 STFKHPAHVPMWRGAKISYFLIALCIFPISIGGFWAYGNLMPSGGMLAALYAFHIHDIPR 377

Query: 124 WLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFI 183
            L+  A   VV   + S+QIY+MP FD  E     + N   +  +R   R  +   + FI
Sbjct: 378 GLLATAFLLVVFSCLSSFQIYSMPAFDSFEAGYTSRTNKPCSIWVRSGFRVFFGFVSFFI 437

Query: 184 GITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMIL 243
           G+  PF    L    G    P T+  PC +W+ I KP KYS +W  +W    LG+   + 
Sbjct: 438 GVALPFL-SSLAGLLGGLTLPVTFAYPCFMWVLIKKPAKYSFNWYFHWGLGWLGVAFSLA 496

Query: 244 SPIGGLRQIILQAKDYKFY 262
             IGG+  ++      KF+
Sbjct: 497 FSIGGIWSMVTNGLKLKFF 515

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1

 Score =  131 bits (329), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 119/243 (48%), Gaps = 21/243 (8%)

Query: 37  TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCY 96
           TA+  V+  F A+GD+AF+YA   +++EIQ T+ S+P  P    M R  +V      + Y
Sbjct: 229 TASEKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSP--PENKVMKRASLVGVSTTTVFY 286

Query: 97  FPVALIGYWMFGNKVEDNILLSLE--KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIET 154
                IGY  FGN+   + L      +P WLI  AN  + +H+IG+YQ+YA P F  +E 
Sbjct: 287 ILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVYAQPFFQFVEE 346

Query: 155 LLVKK-----------------LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFF 197
              KK                 L      L R V R  YV  T F+ + FPFF  +LG  
Sbjct: 347 NCNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAMIFPFFNAILGLL 406

Query: 198 GGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAK 257
           G FAF P T + P  + +A  K +KYS  W    + +++ L +  L+ +G +  +I   K
Sbjct: 407 GAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLINSVK 466

Query: 258 DYK 260
            YK
Sbjct: 467 SYK 469

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
356574036	450	PREDICTED: lysine histidine transporter	1.0	0.584	0.817	1e-125
30693663	446	Lysine histidine transporter 1 [Arabidop	0.992	0.585	0.812	1e-122
30693666	445	Lysine histidine transporter 1 [Arabidop	0.992	0.586	0.812	1e-122
297805586	445	hypothetical protein ARALYDRAFT_916150 [	0.992	0.586	0.808	1e-121
356571417	451	PREDICTED: lysine histidine transporter	0.992	0.578	0.823	1e-118
357454949	487	Lysine/histidine transporter [Medicago t	1.0	0.540	0.821	1e-116
356558767	465	PREDICTED: lysine histidine transporter	1.0	0.565	0.779	1e-116
225452181	442	PREDICTED: lysine histidine transporter	0.992	0.590	0.808	1e-114
255537003	440	amino acid transporter, putative [Ricinu	0.992	0.593	0.850	1e-114
224110766	439	lysine/histidine transporter [Populus tr	1.0	0.599	0.745	1e-113

>gi|356574036|ref|XP_003555159.1| PREDICTED: lysine histidine transporter 1-like [Glycine max]

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/263 (81%), Positives = 236/263 (89%)

Query: 1   MPLPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHN 60
           + L  ++  L YSTIAW+AS  KGVQ +V YGYKAK+ +GTVFNFFSALGDVAFAYAGHN
Sbjct: 188 LSLAAAVMSLSYSTIAWAASAHKGVQENVQYGYKAKSTSGTVFNFFSALGDVAFAYAGHN 247

Query: 61  VVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLE 120
           VV+EIQATIPSTPEKPSKGPMWRGVVVAYIVV LCYFPVALIGYWMFGN VEDNIL+SLE
Sbjct: 248 VVMEIQATIPSTPEKPSKGPMWRGVVVAYIVVGLCYFPVALIGYWMFGNSVEDNILISLE 307

Query: 121 KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVAST 180
           KP WLI MAN FVV+HVIGSYQIYAMPVFDMIET++VKKLNF P+  LRF+VRN+YVA T
Sbjct: 308 KPKWLIAMANMFVVIHVIGSYQIYAMPVFDMIETVMVKKLNFKPSSTLRFIVRNVYVAFT 367

Query: 181 MFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCL 240
           MF+GITFPFF GLLGFFGGFAFAPTTYFLPCI+WLAIYKPR++SLSW  NWICIV G+ L
Sbjct: 368 MFVGITFPFFSGLLGFFGGFAFAPTTYFLPCIMWLAIYKPRRFSLSWWANWICIVFGILL 427

Query: 241 MILSPIGGLRQIILQAKDYKFYS 263
           MILSPIGGLR II+ AKDYKFYS
Sbjct: 428 MILSPIGGLRSIIISAKDYKFYS 450

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30693663|ref|NP_851109.1| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|75262627|sp|Q9FKS8.1|LHT1_ARATH RecName: Full=Lysine histidine transporter 1 gi|14194151|gb|AAK56270.1|AF367281_1 AT5g40780/K1B16_3 [Arabidopsis thaliana] gi|10177957|dbj|BAB11340.1| amino acid permease [Arabidopsis thaliana] gi|22137070|gb|AAM91380.1| At5g40780/K1B16_3 [Arabidopsis thaliana] gi|332007210|gb|AED94593.1| Lysine histidine transporter 1 [Arabidopsis thaliana]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/261 (81%), Positives = 233/261 (89%)

Query: 3   LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
           L  ++  L YSTIAW++S  KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVV
Sbjct: 186 LAAAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVV 245

Query: 63  LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
           LEIQATIPSTPEKPSKGPMWRGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP
Sbjct: 246 LEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKP 305

Query: 123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMF 182
            WLI  AN FVV+HVIGSYQIYAMPVFDM+ETLLVKKLNF PT  LRF VRN YVA+TMF
Sbjct: 306 AWLIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMF 365

Query: 183 IGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
           +G+TFPFFGGLL FFGGFAFAPTTYFLPC+IWLAIYKP+KYSLSW  NW+CIV GL LM+
Sbjct: 366 VGMTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMV 425

Query: 243 LSPIGGLRQIILQAKDYKFYS 263
           LSPIGGLR I++QAK YKFYS
Sbjct: 426 LSPIGGLRTIVIQAKGYKFYS 446

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30693666|ref|NP_198894.2| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|332007211|gb|AED94594.1| Lysine histidine transporter 1 [Arabidopsis thaliana]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/261 (81%), Positives = 233/261 (89%)

Query: 3   LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
           L  ++  L YSTIAW++S  KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVV
Sbjct: 185 LAAAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVV 244

Query: 63  LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
           LEIQATIPSTPEKPSKGPMWRGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP
Sbjct: 245 LEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKP 304

Query: 123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMF 182
            WLI  AN FVV+HVIGSYQIYAMPVFDM+ETLLVKKLNF PT  LRF VRN YVA+TMF
Sbjct: 305 AWLIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMF 364

Query: 183 IGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
           +G+TFPFFGGLL FFGGFAFAPTTYFLPC+IWLAIYKP+KYSLSW  NW+CIV GL LM+
Sbjct: 365 VGMTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMV 424

Query: 243 LSPIGGLRQIILQAKDYKFYS 263
           LSPIGGLR I++QAK YKFYS
Sbjct: 425 LSPIGGLRTIVIQAKGYKFYS 445

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805586|ref|XP_002870677.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata] gi|297316513|gb|EFH46936.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/261 (80%), Positives = 232/261 (88%)

Query: 3   LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
           L  ++  L YSTIAW++S  KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVV
Sbjct: 185 LAAAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVV 244

Query: 63  LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
           LEIQATIPSTPEKPSKGPMWRGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP
Sbjct: 245 LEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKP 304

Query: 123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMF 182
            WLI  AN FVV+HVIGSYQIYAMPVFDM+ETLLVKKLNF PT  LRF VRN YVA+TMF
Sbjct: 305 AWLIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMF 364

Query: 183 IGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
           +G+TFPFFGGLL FFGGFAFAPTTYFLPCIIWLAIYKP+K+ LSW  NW+CIV GL LM+
Sbjct: 365 VGMTFPFFGGLLAFFGGFAFAPTTYFLPCIIWLAIYKPKKFGLSWWANWVCIVFGLFLMV 424

Query: 243 LSPIGGLRQIILQAKDYKFYS 263
           LSPIGGLR I++QAK YKFYS
Sbjct: 425 LSPIGGLRTIVIQAKGYKFYS 445

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571417|ref|XP_003553873.1| PREDICTED: lysine histidine transporter 1-like [Glycine max]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/261 (82%), Positives = 239/261 (91%)

Query: 3   LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
           L  ++  L YSTIAW ASV KGVQ +V YGYKAK+ +GTVFNFF+ALG VAFAYAGHNVV
Sbjct: 191 LAAAVMSLSYSTIAWVASVHKGVQENVQYGYKAKSTSGTVFNFFNALGTVAFAYAGHNVV 250

Query: 63  LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
           LEIQATIPSTPEKPSK PMWRGVVVAYIVVA+CYFPVALIGYWMFGN+V+ +IL+SLEKP
Sbjct: 251 LEIQATIPSTPEKPSKVPMWRGVVVAYIVVAICYFPVALIGYWMFGNEVDSDILISLEKP 310

Query: 123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMF 182
           TWLI MAN FVV+HVIGSYQIYAMPVFDMIET++VKKLNF P+R+LRFVVRN+YVA TMF
Sbjct: 311 TWLIAMANLFVVIHVIGSYQIYAMPVFDMIETVMVKKLNFEPSRMLRFVVRNVYVAFTMF 370

Query: 183 IGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
           I ITFPFF GLLGFFGGFAFAPTTYFLPCI+WLAI+KP++YSLSW INWICIVLGLCLMI
Sbjct: 371 IAITFPFFDGLLGFFGGFAFAPTTYFLPCIMWLAIHKPKRYSLSWFINWICIVLGLCLMI 430

Query: 243 LSPIGGLRQIILQAKDYKFYS 263
           LSPIGGLR II++AK Y+FYS
Sbjct: 431 LSPIGGLRTIIIKAKTYEFYS 451

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454949|ref|XP_003597755.1| Lysine/histidine transporter [Medicago truncatula] gi|355486803|gb|AES68006.1| Lysine/histidine transporter [Medicago truncatula]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/263 (82%), Positives = 235/263 (89%)

Query: 1   MPLPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHN 60
           + L  ++  L YSTIAW AS++KGVQPDVAYGYKA T  GTVFNFFSALGDVAFAYAGHN
Sbjct: 225 ISLAAAIMSLSYSTIAWVASLKKGVQPDVAYGYKATTPTGTVFNFFSALGDVAFAYAGHN 284

Query: 61  VVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLE 120
           VVLEIQATIPSTPEKPSKGPMWRGV++AYIVVALCYFPVALIGYWMFGN V DNIL SL 
Sbjct: 285 VVLEIQATIPSTPEKPSKGPMWRGVLLAYIVVALCYFPVALIGYWMFGNSVADNILTSLN 344

Query: 121 KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVAST 180
           KPTWLIV AN FVV+HVIGSYQ+YAMPVFDMIET++VKKL F PTRLLRFVVRN+YVA T
Sbjct: 345 KPTWLIVAANMFVVIHVIGSYQLYAMPVFDMIETVMVKKLRFKPTRLLRFVVRNVYVAFT 404

Query: 181 MFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCL 240
           MF+GITFPFFG LLGFFGG AFAPTTYFLPCI+WLAIYKP+++SLSW  NWICI+LGL L
Sbjct: 405 MFVGITFPFFGALLGFFGGLAFAPTTYFLPCIMWLAIYKPKRFSLSWFTNWICIILGLLL 464

Query: 241 MILSPIGGLRQIILQAKDYKFYS 263
           MILSPIGGLR IIL AK Y FY+
Sbjct: 465 MILSPIGGLRLIILNAKSYGFYT 487

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558767|ref|XP_003547674.1| PREDICTED: lysine histidine transporter 1-like [Glycine max]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/267 (77%), Positives = 232/267 (86%), Gaps = 4/267 (1%)

Query: 1   MPLPVSLWQLHYSTIAWSASVRKGVQP--DVA--YGYKAKTAAGTVFNFFSALGDVAFAY 56
           + L  ++  L YSTIAW ASV K V    DVA  YGYKA T+AG VFNFF+ALGDVAFAY
Sbjct: 199 ISLAAAIMSLSYSTIAWVASVDKRVHNHVDVAVEYGYKASTSAGNVFNFFNALGDVAFAY 258

Query: 57  AGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNIL 116
           AGHNVVLEIQATIPS+PEKPSKGPMWRGV++AY+VVALCYFPVALIGYW+FGN V+DNIL
Sbjct: 259 AGHNVVLEIQATIPSSPEKPSKGPMWRGVLIAYLVVALCYFPVALIGYWVFGNSVDDNIL 318

Query: 117 LSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLY 176
           ++L KPTWLIV AN FVV+HVIGSYQ+YAMPVFDMIET++VK+L F PT  LRFVVRN+Y
Sbjct: 319 ITLNKPTWLIVTANMFVVIHVIGSYQLYAMPVFDMIETVMVKQLRFKPTWQLRFVVRNVY 378

Query: 177 VASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVL 236
           VA TMF+GITFPFFG LLGFFGGFAFAPTTYFLPCIIWLAIYKP+K+SLSW  NWICI+ 
Sbjct: 379 VAFTMFVGITFPFFGALLGFFGGFAFAPTTYFLPCIIWLAIYKPKKFSLSWITNWICIIF 438

Query: 237 GLCLMILSPIGGLRQIILQAKDYKFYS 263
           GL LMILSPIGGLR IIL AK+Y FY 
Sbjct: 439 GLLLMILSPIGGLRSIILNAKNYGFYQ 465

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452181|ref|XP_002265308.1| PREDICTED: lysine histidine transporter 1 [Vitis vinifera] gi|296090261|emb|CBI40080.3| unnamed protein product [Vitis vinifera]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/261 (80%), Positives = 232/261 (88%)

Query: 3   LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
           L  ++  L YSTIAW ASV KGVQ +V YGYKAK+ AGTVFNFFSALG+VAFAYAGHNVV
Sbjct: 182 LAAAVMSLSYSTIAWGASVDKGVQDNVEYGYKAKSTAGTVFNFFSALGEVAFAYAGHNVV 241

Query: 63  LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
           LEIQATIPSTPEKPSKGPMWRGV+VAYIVVALCYFPVALIGYWMFGN V DNIL+SLE P
Sbjct: 242 LEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALIGYWMFGNAVSDNILISLENP 301

Query: 123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMF 182
            WLI MAN FVV+HVIGSYQIYAMPVFDMIET+LVKKL+F P+  LRF+ RN+YVA TMF
Sbjct: 302 AWLIAMANMFVVIHVIGSYQIYAMPVFDMIETVLVKKLHFKPSTTLRFISRNIYVAFTMF 361

Query: 183 IGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
           +GITFPFF GLL FFGGFAFAPTTYFLPC++WLAIYKP+KYSLSW  NWICI+LGL LMI
Sbjct: 362 VGITFPFFSGLLSFFGGFAFAPTTYFLPCVMWLAIYKPKKYSLSWIANWICIILGLLLMI 421

Query: 243 LSPIGGLRQIILQAKDYKFYS 263
           L+PIG LR IIL+AK Y+FYS
Sbjct: 422 LAPIGALRNIILEAKTYEFYS 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537003|ref|XP_002509568.1| amino acid transporter, putative [Ricinus communis] gi|223549467|gb|EEF50955.1| amino acid transporter, putative [Ricinus communis]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/261 (85%), Positives = 241/261 (92%)

Query: 3   LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
           L  ++  L YSTIAW+ASV KGVQPDV YGYKAK+AAGTVFNFFSALG+VAFAYAGHNVV
Sbjct: 180 LAAAVMSLSYSTIAWTASVHKGVQPDVQYGYKAKSAAGTVFNFFSALGEVAFAYAGHNVV 239

Query: 63  LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
           LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWM+GN VEDNIL+SL+KP
Sbjct: 240 LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMYGNSVEDNILISLQKP 299

Query: 123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMF 182
            WLI MAN FVVVHVIGSYQIYAMPVFDM+ET+LVKKLNF P+ +LRFVVRN+YVA TMF
Sbjct: 300 VWLIAMANLFVVVHVIGSYQIYAMPVFDMMETVLVKKLNFKPSMMLRFVVRNIYVAFTMF 359

Query: 183 IGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
           +GITFPFFGGLLGFFGGFAFAPTTYFLPCI+WL IYKPRKYSLSW  NWICIV+G+ LMI
Sbjct: 360 VGITFPFFGGLLGFFGGFAFAPTTYFLPCIMWLVIYKPRKYSLSWWTNWICIVIGVLLMI 419

Query: 243 LSPIGGLRQIILQAKDYKFYS 263
           +SPIG LRQIIL AKDY+FYS
Sbjct: 420 VSPIGALRQIILDAKDYEFYS 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110766|ref|XP_002315629.1| lysine/histidine transporter [Populus trichocarpa] gi|222864669|gb|EEF01800.1| lysine/histidine transporter [Populus trichocarpa]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/263 (74%), Positives = 222/263 (84%)

Query: 1   MPLPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHN 60
           + L  ++  L YSTIAW A++ KGVQPDV Y YKA T  G VF+FFSALGD+AFAYAGHN
Sbjct: 177 ISLAAAVMSLSYSTIAWGATLNKGVQPDVDYSYKASTKTGAVFDFFSALGDIAFAYAGHN 236

Query: 61  VVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLE 120
           V+LEIQATIPSTPEKPSK PMWRG  +AY+VVA+CYFPVALIGYW FGN VEDNIL+SLE
Sbjct: 237 VILEIQATIPSTPEKPSKKPMWRGAFLAYVVVAICYFPVALIGYWFFGNSVEDNILISLE 296

Query: 121 KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVAST 180
           KP WLI  AN FVV+HVIGSYQIYAM VFDM+ET LVKKL+FSP+ +LRFV R +YV  T
Sbjct: 297 KPAWLIATANMFVVIHVIGSYQIYAMAVFDMLETALVKKLHFSPSFMLRFVTRTVYVGFT 356

Query: 181 MFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCL 240
           M +GI  PFFGGLL FFGGFAFAPTTYFLPCI+WLAIYKP+K+S SW  NW+CIVLG+ L
Sbjct: 357 MIVGICIPFFGGLLSFFGGFAFAPTTYFLPCIMWLAIYKPKKFSFSWIANWVCIVLGILL 416

Query: 241 MILSPIGGLRQIILQAKDYKFYS 263
           MILSPIG LR IIL AKDY+F+S
Sbjct: 417 MILSPIGALRHIILTAKDYEFFS 439

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
TAIR|locus:2154815	446	LHT1 "lysine histidine transpo	0.992	0.585	0.731	2e-102
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.992	0.591	0.678	4.3e-93
TAIR|locus:2008154	453	AT1G48640 [Arabidopsis thalian	0.992	0.576	0.655	3.9e-92
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.992	0.591	0.636	8.3e-90
TAIR|locus:2008605	441	AT1G67640 "AT1G67640" [Arabido	0.992	0.591	0.643	1.4e-89
TAIR|locus:2008435	451	AT1G61270 [Arabidopsis thalian	0.954	0.556	0.565	1.6e-79
TAIR|locus:2031215	440	AT1G25530 [Arabidopsis thalian	0.992	0.593	0.501	1.3e-70
TAIR|locus:2013056	448	AT1G71680 [Arabidopsis thalian	0.988	0.580	0.509	9.2e-68
TAIR|locus:2015383	519	AT1G47670 [Arabidopsis thalian	0.570	0.289	0.373	1.5e-34
TAIR|locus:2199978	451	AT1G08230 [Arabidopsis thalian	0.939	0.547	0.304	2.7e-26

TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 191/261 (73%), Positives = 210/261 (80%)

Query:     3 LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
             L  ++  L YSTIAW++S  KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVV
Sbjct:   186 LAAAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVV 245

Query:    63 LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
             LEIQATIPSTPEKPSKGPMWRGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP
Sbjct:   246 LEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKP 305

Query:   123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMX 182
              WLI  AN FVV+HVIGSYQIYAMPVFDM+ETLLVKKLNF PT  LRF VRN YVA+TM 
Sbjct:   306 AWLIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMF 365

Query:   183 XXXXXXXXXXXXXXXXXXXXXXXTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
                                    TYFLPC+IWLAIYKP+KYSLSW  NW+CIV GL LM+
Sbjct:   366 VGMTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMV 425

Query:   243 LSPIGGLRQIILQAKDYKFYS 263
             LSPIGGLR I++QAK YKFYS
Sbjct:   426 LSPIGGLRTIVIQAKGYKFYS 446

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0016020 "membrane" evidence=ISS

GO:0043090 "amino acid import" evidence=RCA;IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
 Identities = 177/261 (67%), Positives = 198/261 (75%)

Query:     3 LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
             L  ++  L YSTIAW ASV KG   DV Y  +A T+ G VF FFSALGDVAFAYAGHNVV
Sbjct:   181 LAAAVMSLSYSTIAWGASVDKGKVADVDYHLRATTSTGKVFGFFSALGDVAFAYAGHNVV 240

Query:    63 LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
             LEIQATIPSTPEKPSK PMW+GVVVAYI+VALCYFPVAL+GYW FGN V+DNIL++L +P
Sbjct:   241 LEIQATIPSTPEKPSKKPMWKGVVVAYIIVALCYFPVALVGYWAFGNHVDDNILITLSRP 300

Query:   123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMX 182
              WLI +AN  VV+HVIGSYQIYAMPVFDMIET+LVKKL F P   LR + R LYVA TM 
Sbjct:   301 KWLIALANMMVVIHVIGSYQIYAMPVFDMIETVLVKKLRFPPGLTLRLIARTLYVAFTMF 360

Query:   183 XXXXXXXXXXXXXXXXXXXXXXXTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
                                    TYFLPCI+WLAIYKPR++SLSW  NWICI+LG+ LMI
Sbjct:   361 IAITFPFFGGLLGFFGGFAFAPTTYFLPCIMWLAIYKPRRFSLSWFTNWICIILGVMLMI 420

Query:   243 LSPIGGLRQIILQAKDYKFYS 263
             LSPIGGLRQII+ AK YKFYS
Sbjct:   421 LSPIGGLRQIIIDAKTYKFYS 441

GO:0009536 "plastid" evidence=IC

TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)]

 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 171/261 (65%), Positives = 201/261 (77%)

Query:     3 LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
             L  ++  L YSTIAW+A+  KGVQ DV YGYK+ T A TV +FF+ LG +AFAYAGHNVV
Sbjct:   193 LVAAVMSLSYSTIAWTATAAKGVQEDVQYGYKSGTTASTVLSFFTGLGGIAFAYAGHNVV 252

Query:    63 LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
             LEIQATIPSTP  PSKGPMWRGVVVAY+VVALCYFPVAL+GY +FGN V DN+L+SLE P
Sbjct:   253 LEIQATIPSTPSNPSKGPMWRGVVVAYVVVALCYFPVALVGYGVFGNAVLDNVLMSLETP 312

Query:   123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMX 182
              W I  AN FVV+HVIGSYQI+AMPVFDM+ET LVKKLNF P+ +LRF+VRN+YVA TM 
Sbjct:   313 VWAIATANLFVVMHVIGSYQIFAMPVFDMVETFLVKKLNFKPSTVLRFIVRNVYVALTMF 372

Query:   183 XXXXXXXXXXXXXXXXXXXXXXXTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
                                    +YFLPCI+WL IYKP+++SLSW  NW+CIVLG+ LMI
Sbjct:   373 IGIMIPFFGGLLAFFGGFAFAPTSYFLPCIMWLLIYKPKRFSLSWWTNWVCIVLGVVLMI 432

Query:   243 LSPIGGLRQIILQAKDYKFYS 263
             LS IGGLRQII+Q+KDY F+S
Sbjct:   433 LSSIGGLRQIIIQSKDYSFFS 453

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 166/261 (63%), Positives = 200/261 (76%)

Query:     3 LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
             L  ++  L YSTIAW+ASV KGV PDV Y  +A T  G VFNF +ALGDVAFAYAGHNVV
Sbjct:   181 LAAAVMSLTYSTIAWAASVHKGVHPDVDYSPRASTDVGKVFNFLNALGDVAFAYAGHNVV 240

Query:    63 LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
             LEIQATIPSTPE PSK PMWRGV+VAYIVVA+CYFPVA +GY++FGN V+DNIL++LEKP
Sbjct:   241 LEIQATIPSTPEMPSKVPMWRGVIVAYIVVAICYFPVAFLGYYIFGNSVDDNILITLEKP 300

Query:   123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMX 182
              WLI MAN FVV+HVIGSYQI+AMPVFDM+ET+LVKK+NF+P+  LRF+ R+LYVA TM 
Sbjct:   301 IWLIAMANMFVVIHVIGSYQIFAMPVFDMLETVLVKKMNFNPSFKLRFITRSLYVAFTMI 360

Query:   183 XXXXXXXXXXXXXXXXXXXXXXXTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
                                    TY+LPCI+WL + KP+++ LSW  NW CI++G+ L I
Sbjct:   361 VAICVPFFGGLLGFFGGFAFAPTTYYLPCIMWLVLKKPKRFGLSWTANWFCIIVGVLLTI 420

Query:   243 LSPIGGLRQIILQAKDYKFYS 263
             L+PIGGLR II+ AK YKF+S
Sbjct:   421 LAPIGGLRTIIINAKTYKFFS 441

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 168/261 (64%), Positives = 200/261 (76%)

Query:     3 LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
             L  ++  L YSTIAW+ SV+KGV P+V Y  +A T +G VFNF +ALGDVAFAYAGHNVV
Sbjct:   181 LAAAVMSLSYSTIAWATSVKKGVHPNVDYSSRASTTSGNVFNFLNALGDVAFAYAGHNVV 240

Query:    63 LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
             LEIQATIPSTPEKPSK  MW+GVVVAYIVVA+CYFPVA + Y++FGN V+DNIL++LEKP
Sbjct:   241 LEIQATIPSTPEKPSKIAMWKGVVVAYIVVAICYFPVAFVCYYIFGNSVDDNILMTLEKP 300

Query:   123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMX 182
              WLI +AN FVVVHVIGSYQIYAMPVFDM+ET LVKK+ F+P+  LRF+ R LYVA TM 
Sbjct:   301 IWLIAIANAFVVVHVIGSYQIYAMPVFDMLETFLVKKMMFAPSFKLRFITRTLYVAFTMF 360

Query:   183 XXXXXXXXXXXXXXXXXXXXXXXTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
                                    TY+LPCI+WL I KP+KY LSWCINW CIV+G+ L I
Sbjct:   361 VAICIPFFGGLLGFFGGFAFAPTTYYLPCIMWLCIKKPKKYGLSWCINWFCIVVGVILTI 420

Query:   243 LSPIGGLRQIILQAKDYKFYS 263
             L+PIGGLR II+ AK+Y+F+S
Sbjct:   421 LAPIGGLRTIIISAKNYEFFS 441

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 142/251 (56%), Positives = 186/251 (74%)

Query:     3 LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
             L  ++  + YSTIAW AS+ KGV  +V YGYK +        F  ALG++AFAYAGHNVV
Sbjct:   188 LVAAVMSMSYSTIAWVASLTKGVANNVEYGYKRRNNTSVPLAFLGALGEMAFAYAGHNVV 247

Query:    63 LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
             LEIQATIPSTPE PSK PMW+G +VAYI+VA CYFPVAL+G+W FGN VE+NIL +L  P
Sbjct:   248 LEIQATIPSTPENPSKRPMWKGAIVAYIIVAFCYFPVALVGFWTFGNNVEENILKTLRGP 307

Query:   123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMX 182
               LI++AN FV++H++GSYQ+YAMPVFDMIE++++KK +FSPTR+LRF +R  +VA+TM 
Sbjct:   308 KGLIIVANIFVIIHLMGSYQVYAMPVFDMIESVMIKKWHFSPTRVLRFTIRWTFVAATMG 367

Query:   183 XXXXXXXXXXXXXXXXXXXXXXXTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
                                    TYF+PCIIWL + KP+++SLSWCINWICI+LG+ +MI
Sbjct:   368 IAVALPHFSALLSFFGGFIFAPTTYFIPCIIWLILKKPKRFSLSWCINWICIILGVLVMI 427

Query:   243 LSPIGGLRQII 253
             ++PIGGL +++
Sbjct:   428 IAPIGGLAKLM 438

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 131/261 (50%), Positives = 175/261 (67%)

Query:     3 LPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 62
             L  ++  L YSTIAW  S+  G  PDV+Y YKA       F  F+ALG ++FA+AGH V 
Sbjct:   180 LAAAVMSLCYSTIAWGGSIAHGRVPDVSYDYKATNPGDFTFRVFNALGQISFAFAGHAVA 239

Query:    63 LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKP 122
             LEIQAT+PSTPE+PSK PMW+GV+ AY+V A+CYFPVALI YW FG  V+DN+L++L++P
Sbjct:   240 LEIQATMPSTPERPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQDVDDNVLMNLQRP 299

Query:   123 TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMX 182
              WLI  AN  VVVHVIGSYQ++AMPVFD++E ++V K  F    +LRF  R +YVA T+ 
Sbjct:   300 AWLIAAANLMVVVHVIGSYQVFAMPVFDLLERMMVNKFGFKHGVVLRFFTRTIYVAFTLF 359

Query:   183 XXXXXXXXXXXXXXXXXXXXXXXTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
                                    ++FLP I+WL I KPR++S++W +NWI I++G+ +M+
Sbjct:   360 IGVSFPFFGDLLGFFGGFGFAPTSFFLPSIMWLIIKKPRRFSVTWFVNWISIIVGVFIML 419

Query:   243 LSPIGGLRQIILQAKDYKFYS 263
              S IGGLR II  +  Y FY+
Sbjct:   420 ASTIGGLRNIIADSSTYSFYA 440

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 134/263 (50%), Positives = 173/263 (65%)

Query:     3 LPVSLWQLHYSTIAWSASVRKGVQ--PDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHN 60
             L  +L    YS IA  AS+ KG +  P   YG +  T A  VF+ F+ +G +AFA+AGH+
Sbjct:   187 LLAALMSFLYSMIASVASIAKGTEHRPST-YGVRGDTVASMVFDAFNGIGTIAFAFAGHS 245

Query:    61 VVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLE 120
             VVLEIQATIPSTPE PSK PMW+GVVVAYI+V +CY  VA+ GYW FG  VED++L+SLE
Sbjct:   246 VVLEIQATIPSTPEVPSKKPMWKGVVVAYIIVIICYLFVAISGYWAFGAHVEDDVLISLE 305

Query:   121 KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVAST 180
             +P WLI  ANF V +HVIGSYQ++AM VFD IE+ LVK L F+P+  LR V R+ YVA  
Sbjct:   306 RPAWLIAAANFMVFIHVIGSYQVFAMIVFDTIESYLVKTLKFTPSTTLRLVARSTYVALI 365

Query:   181 MXXXXXXXXXXXXXXXXXXXXXXXXTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCL 240
                                      +YFLPCIIWL + +P+++S  W  +W+ IV G+ +
Sbjct:   366 CLVAVCIPFFGGLLGFFGGLVFSSTSYFLPCIIWLIMKRPKRFSAHWWCSWVAIVTGISI 425

Query:   241 MILSPIGGLRQIILQAKDYKFYS 263
              IL+PIGG+R IIL A+ YK +S
Sbjct:   426 AILAPIGGMRHIILSARTYKLFS 448

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
 Identities = 59/158 (37%), Positives = 93/158 (58%)

Query:    12 YSTIAWSASVRKGVQPDVAYG-YKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIP 70
             YST+ W  SV +     ++Y      + +G++F   +ALG +AFA+ GHN+VLEIQ+T+P
Sbjct:   258 YSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFAVLNALGIIAFAFRGHNLVLEIQSTMP 317

Query:    71 STPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSL-------EKPT 123
             ST + P+  PMWRG  ++Y ++ALC FP+++ G+W +GN +    +L+        + P 
Sbjct:   318 STFKHPAHVPMWRGAKISYFLIALCIFPISIGGFWAYGNLMPSGGMLAALYAFHIHDIPR 377

Query:   124 WLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLN 161
              L+  A   VV   + S+QIY+MP FD  E     + N
Sbjct:   378 GLLATAFLLVVFSCLSSFQIYSMPAFDSFEAGYTSRTN 415

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2199978 AT1G08230 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 2.7e-26, P = 2.7e-26
 Identities = 82/269 (30%), Positives = 130/269 (48%)

Query:    10 LHYSTIAWSASVRKGVQPDVAYGYKAKTAAGT----VFNFFSALGDVAFAYAGHNVVLEI 65
             L YS  A +AS+  G +P+     K  T  G     VF  F+A+  +A  Y G+ ++ EI
Sbjct:   188 LLYSASAAAASIYIGKEPNAPE--KDYTIVGDPETRVFGIFNAMAIIATTY-GNGIIPEI 244

Query:    66 QATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNIL---LSLEK- 121
             QATI +    P KG M +G+ + Y+VV + +F VA+ GYW FG K    I    L+ E  
Sbjct:   245 QATISA----PVKGKMMKGLCMCYLVVIMTFFTVAITGYWAFGKKANGLIFTNFLNAETN 300

Query:   122 ----PTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK--KLNFSPTRLL-RFVVRN 174
                 PTW I + N F V+ +     +Y  P+ D++E+++    K  FS   ++ R VVR+
Sbjct:   301 HYFVPTWFIFLVNLFTVLQLSAVAVVYLQPINDILESVISDPTKKEFSIRNVIPRLVVRS 360

Query:   175 LYVASTMXXXXXXXXXXXXXXXXXXXXXXXXTYFLPCIIWLAIYKPRKYSLSWCINWICI 234
             L+V                             + LP + +   +KP K S  + IN +  
Sbjct:   361 LFVVMATIVAAMLPFFGDVNSLLGAFGFIPLDFVLPVVFFNFTFKPSKKSFIFWINTVIA 420

Query:   235 VLGLCLMILSPIGGLRQIILQAKDYKFYS 263
             V+  CL +++ +  +RQII+ A  YK ++
Sbjct:   421 VVFSCLGVIAMVAAVRQIIIDANTYKLFA 449

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015185 "gamma-aminobutyric acid transmembrane transporter activity" evidence=IDA

GO:0015812 "gamma-aminobutyric acid transport" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FKS8	LHT1_ARATH	No assigned EC number	0.8122	0.9923	0.5852	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	263
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	2e-61
PLN03074	473	PLN03074, PLN03074, auxin influx permease; Provisi	4e-07
COG0814	415	COG0814, SdaC, Amino acid permeases [Amino acid tr	1e-04

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  198 bits (505), Expect = 2e-61
 Identities = 87/248 (35%), Positives = 127/248 (51%), Gaps = 12/248 (4%)

Query: 12  YSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPS 71
           Y  I   +    GV      G         +   F A+G + FA+ GH V+L IQ T+ S
Sbjct: 162 YIVILVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS 221

Query: 72  TPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANF 131
            P K     M + ++ A I+V + Y  V L+GY  FGN V+ NILL+L K  WLI +AN 
Sbjct: 222 -PSK--FKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANL 278

Query: 132 FVVVHVIGSYQIYAMPVFDMIETLLVKK----LNFSPTRLLRFVVRNLYVASTMFIGITF 187
            +V+H++ SY + A P+  ++E LL +K     +   ++LLR V+R+  V  T  I I+ 
Sbjct: 279 LLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISV 338

Query: 188 PFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSW-----CINWICIVLGLCLMI 242
           PF G  L   G  + AP T+ LP +  L + K +K SL        ++ ICIV+GL LM 
Sbjct: 339 PFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMA 398

Query: 243 LSPIGGLR 250
               G + 
Sbjct: 399 YGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 39/183 (21%), Positives = 75/183 (40%), Gaps = 21/183 (11%)

Query: 45  FFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYF------P 98
           +F+   ++ + + GH V +EI               MW+     YI +A   +      P
Sbjct: 235 YFTGATNILYTFGGHAVTVEIMHA------------MWKPQKFKYIYLAATLYVLTLTLP 282

Query: 99  VALIGYWMFGNKVED-NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV 157
            A   YW FG+++   +   SL   +     A   +++H   ++     P++ + E  + 
Sbjct: 283 SAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVILMLIHQFITFGFACTPLYFVWEKAI- 341

Query: 158 KKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAI 217
             ++ + +  LR + R   V    F+ I FPFFG +    G    + T Y +P +  +  
Sbjct: 342 -GVHDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLT 400

Query: 218 YKP 220
           Y+ 
Sbjct: 401 YRS 403

Length = 473

>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 35/218 (16%), Positives = 79/218 (36%), Gaps = 23/218 (10%)

Query: 43  FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI 102
                A+    F++  H  +  +   +     K SK  + + +++  ++  + Y  V   
Sbjct: 193 KYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRKAILIGSLIALVLYILVGFF 248

Query: 103 GYWMFGNKVEDNILLSLEKPTWLI-------------VMANFFVVVHVIGSYQIYAMPVF 149
            +  FG+ V  NIL + E+   L+             +  N F +  +  S+    + +F
Sbjct: 249 VFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLF 308

Query: 150 DMIETLLVKKLNFSPTR-----LLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAP 204
           + +  L  KK N  P R     L         +       I   + GGL+   G      
Sbjct: 309 EGLADLF-KKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPA 367

Query: 205 TTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMI 242
             +  P  +   +   + Y  ++ +  + ++ G+ +++
Sbjct: 368 LLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVIL 405

Length = 415

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.96
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.96
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.63
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.28
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.25
PRK10483	414	tryptophan permease; Provisional	99.03
PRK15132	403	tyrosine transporter TyrP; Provisional	98.9
PRK09664	415	tryptophan permease TnaB; Provisional	98.85
TIGR00814	397	stp serine transporter. The HAAAP family includes	98.68
PRK13629	443	threonine/serine transporter TdcC; Provisional	98.67
PRK11021	410	putative transporter; Provisional	98.2
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.1
PRK10746	461	putative transport protein YifK; Provisional	98.08
PRK10655	438	potE putrescine transporter; Provisional	98.04
PRK10644	445	arginine:agmatin antiporter; Provisional	98.03
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.02
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.96
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	97.94
TIGR00906	557	2A0303 cationic amino acid transport permease.	97.93
TIGR00909	429	2A0306 amino acid transporter.	97.86
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	97.83
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.83
PRK10197	446	gamma-aminobutyrate transporter; Provisional	97.79
KOG1287	479	consensus Amino acid transporters [Amino acid tran	97.75
PRK10249	458	phenylalanine transporter; Provisional	97.71
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.69
PRK11387	471	S-methylmethionine transporter; Provisional	97.61
PRK10836	489	lysine transporter; Provisional	97.6
COG0531	466	PotE Amino acid transporters [Amino acid transport	97.6
TIGR00911	501	2A0308 L-type amino acid transporter.	97.6
PRK15049	499	L-asparagine permease; Provisional	97.57
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	97.56
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	97.54
PRK10238	456	aromatic amino acid transporter; Provisional	97.51
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	97.42
PRK10580	457	proY putative proline-specific permease; Provision	97.35
TIGR00913	478	2A0310 amino acid permease (yeast).	97.34
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.23
PRK15238	496	inner membrane transporter YjeM; Provisional	96.97
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	96.8
TIGR00930	953	2a30 K-Cl cotransporter.	96.66
KOG1286	554	consensus Amino acid transporters [Amino acid tran	96.45
TIGR00912	359	2A0309 spore germination protein (amino acid perme	96.25
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	96.12
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	95.65
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	92.8
PF03845	320	Spore_permease: Spore germination protein; InterPr	91.65
PRK10484	523	putative transporter; Provisional	90.47
COG0833	541	LysP Amino acid transporters [Amino acid transport	89.82
COG1457	442	CodB Purine-cytosine permease and related proteins	89.54
COG1914	416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	89.41
COG1953	497	FUI1 Cytosine/uracil/thiamine/allantoin permeases	87.35
PF00209	523	SNF: Sodium:neurotransmitter symporter family; Int	82.21
KOG1289	550	consensus Amino acid transporters [Amino acid tran	81.86
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	80.48

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=5.4e-37  Score=275.77  Aligned_cols=212  Identities=21%  Similarity=0.381  Sum_probs=195.9

Q ss_pred             CCCCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCC-cchhhhHHHHHHHHHHhhhhhhhhhccccchhh
Q 024723           36 KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM-WRGVVVAYIVVALCYFPVALIGYWMFGNKVEDN  114 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~-~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~  114 (263)
                      .+.-..+.+++..+|+.+|||+|+.++.|++++|    |+|++++- ..++..++.+++++|..+|.+||++|||++++.
T Consensus       234 ~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~s  309 (449)
T KOG1304|consen  234 LPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGS  309 (449)
T ss_pred             cccccchhhhHHHHHHHHHHhccceEEEehhhcc----cChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccce
Confidence            3345568899999999999999999999999999    89998752 267779999999999999999999999999999


Q ss_pred             hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhhcCChhHHH
Q 024723          115 ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLL  194 (263)
Q Consensus       115 il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~  194 (263)
                      |+.|+|+ +++.+.+++++++.++++||++++|..+++|+.+.++.+++++++....+|..+++.+..+|..+||++.++
T Consensus       310 ITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fi  388 (449)
T KOG1304|consen  310 ITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFI  388 (449)
T ss_pred             EEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhH
Confidence            9999998 899999999999999999999999999999999887766666677889999999999999999999999999


Q ss_pred             HhhhhhhhhhHHHhHhHHHHHHHhCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024723          195 GFFGGFAFAPTTYFLPCIIWLAIYKPRK---YSLSWCINWICIVLGLCLMILSPIGGLRQI  252 (263)
Q Consensus       195 ~lvGs~~~~~l~~i~P~l~~l~~~~~~~---~~~~~~~~~~ii~~g~~~~v~gt~~si~~i  252 (263)
                      +++||++++.+.+++|++++++.++++.   .+|+++.+.+++++|++.++.|||+|+.++
T Consensus       389 sLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  389 SLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            9999999999999999999999998765   368889999999999999999999999874

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=2e-36  Score=280.36  Aligned_cols=248  Identities=19%  Similarity=0.296  Sum_probs=208.1

Q ss_pred             chhHHHHHHHHHHHHHHHhhhccCCCCcccccccCCCCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCC
Q 024723            2 PLPVSLWQLHYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM   81 (263)
Q Consensus         2 s~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~   81 (263)
                      |.++.++++.+...+.+..+.++..++.+++     .+.++..++.++++++|+|++|.++|++++||    |||++|+ 
T Consensus       197 S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~-----~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P~~F~-  266 (473)
T PLN03074        197 SFLGLLMTTYTAWYMTIAALSHGQVEGVKHS-----GPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKPQKFK-  266 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-----CchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cChhccc-
Confidence            5667776666656666677777665554332     45577889999999999999999999999999    9999988 


Q ss_pred             cchhhhHHHHHHHHHHhhhhhhhhhccccchh--hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh
Q 024723           82 WRGVVVAYIVVALCYFPVALIGYWMFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK  159 (263)
Q Consensus        82 ~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~--~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~  159 (263)
                       ++..++...+...|..+|+.||++|||++++  +.+.|+|.+. ...++++++.++++.+||+++.|..+.+|+....+
T Consensus       267 -~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~  344 (473)
T PLN03074        267 -YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH  344 (473)
T ss_pred             -chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc
Confidence             8888999999999999999999999998764  6787898654 46789999999999999999999999999987542


Q ss_pred             ccCCccchhHHHHHHHHHHHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCC-------------CCch-
Q 024723          160 LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR-------------KYSL-  225 (263)
Q Consensus       160 ~~~~~~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~-------------~~~~-  225 (263)
                        ..+....|..+|+.+++.++++|+.+|+|+++++++||++++.+++++|+++|++.++++             .++| 
T Consensus       345 --~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  422 (473)
T PLN03074        345 --DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWT  422 (473)
T ss_pred             --ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccc
Confidence              234567889999999999999999999999999999999999999999999999976553             1122 


Q ss_pred             -hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccccCC
Q 024723          226 -SWCINWICIVL-GLCLMILSPIGGLRQIILQAKDYKFYS  263 (263)
Q Consensus       226 -~~~~~~~ii~~-g~~~~v~gt~~si~~ii~~~~~~~~f~  263 (263)
                       +.+.|++++++ |++..+.|||+|++++++++++|+.|+
T Consensus       423 ~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~  462 (473)
T PLN03074        423 GMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFA  462 (473)
T ss_pred             eehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhh
Confidence             24789999986 555578999999999999999999874

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=2.7e-36  Score=279.95  Aligned_cols=206  Identities=16%  Similarity=0.236  Sum_probs=180.2

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCC-CC
Q 024723           43 FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSL-EK  121 (263)
Q Consensus        43 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl-~~  121 (263)
                      .+.+.++|+++|||.||.+.|++++||    +||+++++.+++.+++.++.++|..+|++||++|||+++++++.|+ |.
T Consensus       256 ~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~  331 (467)
T PTZ00206        256 NRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPV  331 (467)
T ss_pred             hHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCC
Confidence            468999999999999999999999999    8888777778999999999999999999999999999999999999 56


Q ss_pred             chHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhhcCChhHHHHhhhhhh
Q 024723          122 PTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFA  201 (263)
Q Consensus       122 ~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~~lvGs~~  201 (263)
                      +|....++++++.+.++++||++.+|+|+.+++.+..+. ++.+.+++...+..+++.+.++|+.+|+++.+++++||++
T Consensus       332 ~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~  410 (467)
T PTZ00206        332 NEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDA-RKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSIS  410 (467)
T ss_pred             CCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCc-ccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHH
Confidence            677888899999999999999999999999999874332 2234456666677777788999999999999999999999


Q ss_pred             hhhHHHhHhHHHHHHH---hCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024723          202 FAPTTYFLPCIIWLAI---YKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQII  253 (263)
Q Consensus       202 ~~~l~~i~P~l~~l~~---~~~~~~~~~~~~~~~ii~~g~~~~v~gt~~si~~ii  253 (263)
                      ++.++|++|++||++.   .+++...++++.+++++++|++..+.|||+|+++.+
T Consensus       411 ~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        411 GGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            9999999999999984   233333345678999999999999999999999875

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=6.6e-36  Score=272.03  Aligned_cols=245  Identities=44%  Similarity=0.874  Sum_probs=217.3

Q ss_pred             CchhHHHHHHHHHHHHHHHhhhccCCC-CcccccccCCCCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCC
Q 024723            1 MPLPVSLWQLHYSTIAWSASVRKGVQP-DVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKG   79 (263)
Q Consensus         1 ~s~~~~~~~~~~~~~~~~~~i~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~   79 (263)
                      +|..+++|++.|..+.+++++.+|... ..+.+.++. .+..  ..++++|++.|+|++|.++||||++|    |+|+++
T Consensus       188 ~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~-~~~~--~~f~a~g~iaFaf~gH~v~peIq~tM----k~p~~f  260 (437)
T KOG1303|consen  188 LSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL-GTIP--TVFTALGIIAFAYGGHAVLPEIQHTM----KSPPKF  260 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC-CCCc--chhhhhhheeeeecCCeeeeehHhhc----CCchhh
Confidence            478899999999999999999999776 332333211 2221  11899999999999999999999999    888885


Q ss_pred             CCcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh
Q 024723           80 PMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK  159 (263)
Q Consensus        80 ~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~  159 (263)
                      +  |++..++.+++++|...++.||++|||+++|+++.|++.+.|....+++++.+|++.++.++..|..+.+|+....+
T Consensus       261 ~--~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~  338 (437)
T KOG1303|consen  261 K--KALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVK  338 (437)
T ss_pred             h--hHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccC
Confidence            5  99999999999999999999999999999999999997567899999999999999999999999999999998765


Q ss_pred             ccC--CccchhHHHHHHHHHHHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCchhHHHHHHH-HHH
Q 024723          160 LNF--SPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWIC-IVL  236 (263)
Q Consensus       160 ~~~--~~~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~~~~~~~~i-i~~  236 (263)
                      +++  ++...+|.+.|+..++.+.++|+.+|+|+++++++|++....+++++|+++|++.+++++...+|+.+|.+ .++
T Consensus       339 ~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~  418 (437)
T KOG1303|consen  339 HPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVV  418 (437)
T ss_pred             CccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh
Confidence            441  24566899999999999999999999999999999999999999999999999999998888899999999 799


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 024723          237 GLCLMILSPIGGLRQIIL  254 (263)
Q Consensus       237 g~~~~v~gt~~si~~ii~  254 (263)
                      |+++++....++++.++.
T Consensus       419 ~~~~~v~~~~~~~~~li~  436 (437)
T KOG1303|consen  419 GLLLSVLAAVGGVRSLII  436 (437)
T ss_pred             hhhHHHHHHHHHHHHHhh
Confidence            999999999999988875

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=1.4e-35  Score=270.74  Aligned_cols=209  Identities=30%  Similarity=0.616  Sum_probs=188.6

Q ss_pred             CCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCC-CCCcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhh
Q 024723           38 AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK-GPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNIL  116 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~-~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il  116 (263)
                      ...++.+++.++|+++|+|.||+++|++++||    |||++ +++++++.+++.+++++|..+|+.||++||+++++|++
T Consensus       187 ~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il  262 (409)
T PF01490_consen  187 PFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNIL  262 (409)
T ss_pred             ccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhh
Confidence            45677899999999999999999999999999    88888 56778999999999999999999999999999999999


Q ss_pred             hCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh--------ccCCccchhHHHHHHHHHHHHHHHHhhcC
Q 024723          117 LSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK--------LNFSPTRLLRFVVRNLYVASTMFIGITFP  188 (263)
Q Consensus       117 ~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~r~~~v~~~~~vA~~ip  188 (263)
                      +|+|++++...++++++.++++.+||++.+|.++.+|+.+.++        .+.+.++++|..+|+.++..+.++|+.+|
T Consensus       263 ~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp  342 (409)
T PF01490_consen  263 LNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVP  342 (409)
T ss_pred             hcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhcc
Confidence            9999877889999999999999999999999999999988753        12234567889999999999999999999


Q ss_pred             ChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCchhH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 024723          189 FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSW-----CINWICIVLGLCLMILSPIGGLR  250 (263)
Q Consensus       189 ~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~~~-----~~~~~ii~~g~~~~v~gt~~si~  250 (263)
                      +++++++++|++++..++|++|+++|+|.+++++.+.++     ..++.++++|++.++.|||++++
T Consensus       343 ~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~  409 (409)
T PF01490_consen  343 NFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSIQ  409 (409)
T ss_pred             chhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHcC
Confidence            999999999999999999999999999998887654433     44788999999999999998863

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.96  E-value=1.5e-28  Score=222.72  Aligned_cols=245  Identities=20%  Similarity=0.274  Sum_probs=204.3

Q ss_pred             chhHHHHHHHHHHHHHHHhhhccC-CCCcccccccCCCCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCC
Q 024723            2 PLPVSLWQLHYSTIAWSASVRKGV-QPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP   80 (263)
Q Consensus         2 s~~~~~~~~~~~~~~~~~~i~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~   80 (263)
                      |.++++..+.++...+.....+.. ..+..++   .+...++.+.+.++++++|+|.||+|..++++||    +||++++
T Consensus       155 S~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~  227 (411)
T KOG1305|consen  155 SALSLASVVYFVVLVVYKYFQGPCALGRLSYL---VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKK  227 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccCCcccc---cCCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHH
Confidence            344555555555555555555443 1222222   1223333689999999999999999999999999    9999999


Q ss_pred             CcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCCCCchHH------HHHHHHHHHHHHHHHhHhhhHHHHHHHHH
Q 024723           81 MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWL------IVMANFFVVVHVIGSYQIYAMPVFDMIET  154 (263)
Q Consensus        81 ~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl~~~~~~------~~~~~~~~~i~~~~s~pl~~~p~~~~~~~  154 (263)
                      ++++...+...++.+|..+|.+||+.|||++++|++.+++..+..      ...++..+.++.+.++|+..+|+|..+++
T Consensus       228 i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~  307 (411)
T KOG1305|consen  228 IQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDE  307 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            999999999999999999999999999999999999999864433      36899999999999999999999999998


Q ss_pred             HHhhhccC--CccchhHHHHHHHHHHHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCchhHHHHHH
Q 024723          155 LLVKKLNF--SPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWI  232 (263)
Q Consensus       155 ~~~~~~~~--~~~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~~~~~~~~  232 (263)
                      .+.++...  +.++.++.+++..++..+.+.|+.+|+++++++++||+++..++|++|+++|++..++  +.+++...++
T Consensus       308 ~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~  385 (411)
T KOG1305|consen  308 LLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALI  385 (411)
T ss_pred             HhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHH
Confidence            88765332  3456778899999999999999999999999999999999999999999999999876  5667788899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 024723          233 CIVLGLCLMILSPIGGLRQIILQ  255 (263)
Q Consensus       233 ii~~g~~~~v~gt~~si~~ii~~  255 (263)
                      ..++++..++.|+...+.++..+
T Consensus       386 ~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  386 FLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999998765

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.96  E-value=1e-30  Score=224.55  Aligned_cols=215  Identities=17%  Similarity=0.297  Sum_probs=193.7

Q ss_pred             cHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCCC
Q 024723           41 TVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLE  120 (263)
Q Consensus        41 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl~  120 (263)
                      +..+++.++|+++|+|+.|..+|+++..|    +||++|.  ..+.|+.+...++-..+|..||++|||.|++.|.+|+|
T Consensus       300 di~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~Fn--~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp  373 (524)
T KOG4303|consen  300 DINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQFN--VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP  373 (524)
T ss_pred             EcccCceEEEEEEEeeeceeecccccccc----CChhHhe--eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC
Confidence            44588889999999999999999999999    9999998  89999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhcc---C-------CccchhHHHHHHHHHHHHHHHHhhcCCh
Q 024723          121 KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLN---F-------SPTRLLRFVVRNLYVASTMFIGITFPFF  190 (263)
Q Consensus       121 ~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~---~-------~~~~~~~~~~r~~~v~~~~~vA~~ip~~  190 (263)
                      .++ +...+++..++..+.|||+-++.+.+.+|+.+....+   +       .+-+.|...+|+++++++.++|+.+|+|
T Consensus       374 ~qs-fk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf  452 (524)
T KOG4303|consen  374 NQS-FKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHF  452 (524)
T ss_pred             ccc-hhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHH
Confidence            755 5668899999999999999999999999987754321   1       1123455688999999999999999999


Q ss_pred             hHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 024723          191 GGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFY  262 (263)
Q Consensus       191 ~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~~~~~~~~ii~~g~~~~v~gt~~si~~ii~~~~~~~~f  262 (263)
                      ..+++++|++.++.++|+.|++||++++++.....++..+..++++|..+++.|.|.|..++++.++...+|
T Consensus       453 ~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~~  524 (524)
T KOG4303|consen  453 VELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADSD  524 (524)
T ss_pred             HHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCCC
Confidence            999999999999999999999999999988877788899999999999999999999999999998876543

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.63  E-value=2.9e-14  Score=130.75  Aligned_cols=205  Identities=16%  Similarity=0.225  Sum_probs=149.4

Q ss_pred             CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhC
Q 024723           39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLS  118 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~n  118 (263)
                      +..+.++..++|++.|||+||+++|++++||    |+++++..+|+...+..+..++|..+++.+|..+|+.+.++++++
T Consensus       189 ~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~----~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~  264 (415)
T COG0814         189 QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAA  264 (415)
T ss_pred             hhhHHHHHHHhhHHHhhhhCCccchHHHHHh----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHc
Confidence            5778899999999999999999999999999    555554566999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHH--------------HHHHHhhhccC--Cc-cchhH-HHHHHHHHHHH
Q 024723          119 LEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDM--------------IETLLVKKLNF--SP-TRLLR-FVVRNLYVAST  180 (263)
Q Consensus       119 l~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~--------------~~~~~~~~~~~--~~-~~~~~-~~~r~~~v~~~  180 (263)
                      .++++. ..............++|.+.++....              .++...++++.  ++ ...+. .......+...
T Consensus       265 ~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~  343 (415)
T COG0814         265 KEQNIS-LLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYP  343 (415)
T ss_pred             cCchHH-HHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHH
Confidence            986443 33344444444446666666555433              33333221111  11 11122 23344455667


Q ss_pred             HHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 024723          181 MFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGG  248 (263)
Q Consensus       181 ~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~~~~~~~~ii~~g~~~~v~gt~~s  248 (263)
                      ..++...|..+.+.+.+|+.....+.++.|...+.|....+..+.++...++++++|+..+..-.+++
T Consensus       344 ~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~  411 (415)
T COG0814         344 WGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLAT  411 (415)
T ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            78889999999999999999999999999999987776555444333567788888888777766544

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.28  E-value=8.3e-10  Score=100.76  Aligned_cols=194  Identities=18%  Similarity=0.311  Sum_probs=142.8

Q ss_pred             CCCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhh--hhhhhh---------
Q 024723           37 TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPV--ALIGYW---------  105 (263)
Q Consensus        37 ~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~--g~~gy~---------  105 (263)
                      +.+.++...+.++|+..+||+.|.++|++.+.++   +|++|.+  |++.++..+..++|.+.  .+.|-.         
T Consensus       178 ~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d~~k~~--~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~  252 (394)
T PF03222_consen  178 PSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GDPKKIR--KAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAI  252 (394)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---ccHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            3567889999999999999999999999999994   4555544  89998888888888764  344411         


Q ss_pred             hccccchh--hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHH
Q 024723          106 MFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFI  183 (263)
Q Consensus       106 ~fG~~~~~--~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~v  183 (263)
                      .-|++..+  ..+.+..++.+......+...+.+.+||--.....+|.+++.++.++    +...|...........+++
T Consensus       253 ~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~----~~~~r~~~~~ltf~ppl~~  328 (394)
T PF03222_consen  253 AQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKN----NSSGRLKTWLLTFLPPLIF  328 (394)
T ss_pred             hcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----cccchHHHHHHHHHhHHHH
Confidence            22222221  34445545566777889999999999999999999999999886521    1224444455567778899


Q ss_pred             HhhcCC-hhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCc-h----hHHHHHHHHHHHHHH
Q 024723          184 GITFPF-FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYS-L----SWCINWICIVLGLCL  240 (263)
Q Consensus       184 A~~ip~-~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~-~----~~~~~~~ii~~g~~~  240 (263)
                      |...|+ |-..+++.| .....+..++|+++.+|.|++++.+ +    .+.....++++|+..
T Consensus       329 a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~i  390 (394)
T PF03222_consen  329 ALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILI  390 (394)
T ss_pred             HHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHH
Confidence            999995 789999999 9999999999999999998765432 1    234445555555443

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.25  E-value=4.5e-10  Score=102.06  Aligned_cols=171  Identities=13%  Similarity=0.105  Sum_probs=130.4

Q ss_pred             CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchh------
Q 024723           40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED------  113 (263)
Q Consensus        40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~------  113 (263)
                      ..+.++..+++...++|++|.+++++.+++    +|+ +++.+|+..++..+++++|.++........+.+.-.      
T Consensus       175 ~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~  249 (381)
T TIGR00837       175 SYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKG  249 (381)
T ss_pred             ccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcC
Confidence            466789999999999999999999999998    545 445669999999999999998865555444322111      


Q ss_pred             ----h---hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhh
Q 024723          114 ----N---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGIT  186 (263)
Q Consensus       114 ----~---il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~  186 (263)
                          +   ...+.-.+.+...+..+...+.+..|+.-.....+|.+++.++++.+    +.+|.....+..+...++|.+
T Consensus       250 ~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~----~~~~~~~~~~~~~~pl~~a~~  325 (381)
T TIGR00837       250 GNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS----KKGRFKTGLLTFLPPLVFALF  325 (381)
T ss_pred             CChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----cCCCchhhhhhHHhHHHHHHH
Confidence                1   12221123455677888889999999999999999998888765321    123455566667888899999


Q ss_pred             cCChh-HHHHhhhhhhhhhHHHhHhHHHHHHHhCC
Q 024723          187 FPFFG-GLLGFFGGFAFAPTTYFLPCIIWLAIYKP  220 (263)
Q Consensus       187 ip~~~-~v~~lvGs~~~~~l~~i~P~l~~l~~~~~  220 (263)
                      .|+.. ..++..| +.+..+.+++|++++++.|++
T Consensus       326 ~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~  359 (381)
T TIGR00837       326 YPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK  359 (381)
T ss_pred             hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            99766 8999999 888999999999999998765

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK10483 tryptophan permease; Provisional

Probab=99.03  E-value=2.1e-08  Score=91.51  Aligned_cols=171  Identities=17%  Similarity=0.162  Sum_probs=127.7

Q ss_pred             CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHh--hhhhhhhh---------cc
Q 024723           40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFP--VALIGYWM---------FG  108 (263)
Q Consensus        40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~--~g~~gy~~---------fG  108 (263)
                      ..+...+.++|++.+||+.|+++|++.+.++   +|++  +.||++.++..+..++|.+  ..+.|-..         -|
T Consensus       189 ~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~  263 (414)
T PRK10483        189 SYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKG  263 (414)
T ss_pred             hhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Confidence            3456788999999999999999999999983   4555  4559999999998888876  33333222         23


Q ss_pred             ccchh--hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhh
Q 024723          109 NKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGIT  186 (263)
Q Consensus       109 ~~~~~--~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~  186 (263)
                      ++...  ..+.+..++.+......+...+.+.+||--.....+|.+++.++.+++    ...|.....+..+...++|..
T Consensus       264 ~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~----~~~r~~~~~ltflPPl~~al~  339 (414)
T PRK10483        264 GNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS----AMGRFKTALLTFLPPVVGGLL  339 (414)
T ss_pred             CChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----cccceeeehhhHhhHHHHHHH
Confidence            32211  122222233456677888889999999999999999999998865422    224444556678899999999


Q ss_pred             cCC-hhHHHHhhhhhhhhhHHHhHhHHHHHHHhCC
Q 024723          187 FPF-FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP  220 (263)
Q Consensus       187 ip~-~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~  220 (263)
                      .|+ |-..+++.|.. ...+.-++|+++-++.|++
T Consensus       340 ~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        340 FPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR  373 (414)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence            996 88999999976 6678889999999999875

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.90  E-value=4.7e-08  Score=89.25  Aligned_cols=190  Identities=15%  Similarity=0.191  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccc----------hh
Q 024723           44 NFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV----------ED  113 (263)
Q Consensus        44 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~----------~~  113 (263)
                      -.+.++|++.+||+.|+++|++.+.++   +|++|  .||++.++..+..++|.+.=......-+.+.          .+
T Consensus       182 ~~~~~iPvl~~SFgfh~iIpsl~~y~~---~~~~~--~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~  256 (403)
T PRK15132        182 LALSAIPVIFTSFGFHGSVPSIVSYMG---GNIRK--LRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLN  256 (403)
T ss_pred             HHHHHHHHHHHHhhCCcccHHHHHHhC---cCHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchH
Confidence            489999999999999999999999983   34444  4489998888888877754433332222111          11


Q ss_pred             hhhhCC---CCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhhcCC-
Q 024723          114 NILLSL---EKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPF-  189 (263)
Q Consensus       114 ~il~nl---~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~ip~-  189 (263)
                      ++++.+   .++.+....+.+...+.+.+||--.....+|.+.+.++.+.+    ...|.....+..+.++++|...|+ 
T Consensus       257 ~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~----~~~r~~~~~l~flppli~a~~~P~~  332 (403)
T PRK15132        257 GLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT----VGGRLQTGLITFLPPLAFALFYPRG  332 (403)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc----ccCCchhehhhHHHHHHHHHHhHHH
Confidence            222322   234567778888889999999999999999999998864321    223566667778899999999995 


Q ss_pred             hhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCC---CCch--hHHHHHHHHHHHHHHHHH
Q 024723          190 FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR---KYSL--SWCINWICIVLGLCLMIL  243 (263)
Q Consensus       190 ~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~---~~~~--~~~~~~~ii~~g~~~~v~  243 (263)
                      |...+++.|. ....+.+++|+++-+|.++++   +.+.  ++...++.+++|++..+.
T Consensus       333 F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~  390 (403)
T PRK15132        333 FVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGI  390 (403)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence            7889999986 578899999999999988654   2221  456677777777665554

>PRK09664 tryptophan permease TnaB; Provisional

Probab=98.85  E-value=2.6e-07  Score=84.31  Aligned_cols=191  Identities=17%  Similarity=0.174  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHH--hhhhhhhh---------hcccc
Q 024723           42 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYF--PVALIGYW---------MFGNK  110 (263)
Q Consensus        42 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~--~~g~~gy~---------~fG~~  110 (263)
                      +..+..++|++.+||+.|+++|++.+.++   +|+++.+  +++.....+..++|.  ..++.|-.         .-|++
T Consensus       192 ~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~~~--kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~n  266 (415)
T PRK09664        192 FPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDKLI--KSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGN  266 (415)
T ss_pred             HHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence            34688899999999999999999999983   4555544  788877777777773  33444422         23333


Q ss_pred             chh---hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhhc
Q 024723          111 VED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITF  187 (263)
Q Consensus       111 ~~~---~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~i  187 (263)
                      +.+   ....+ .++.+......+...+.+.+||--......|.+.+.++.+++    ...|.....+..+...++|...
T Consensus       267 v~~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~----~~~r~~~~~ltflPPl~~al~~  341 (415)
T PRK09664        267 VDSLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS----HGGRFKTVLLTFLPPALLYLIF  341 (415)
T ss_pred             chHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----cccceeeehhhHhhhHHHHHHh
Confidence            333   12223 234567778888999999999999999999999998865421    2245555566788999999999


Q ss_pred             CC-hhHHHHhhhhhhhhhHHHhHhHHHHHHHhCC-CCCch----hHHHHHHHHHHHHHHHHH
Q 024723          188 PF-FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP-RKYSL----SWCINWICIVLGLCLMIL  243 (263)
Q Consensus       188 p~-~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~-~~~~~----~~~~~~~ii~~g~~~~v~  243 (263)
                      |+ |-..++..|.. ...+.-++|+++-+|.|++ +....    .+..-++.+++|++..+.
T Consensus       342 P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~  402 (415)
T PRK09664        342 PNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILC  402 (415)
T ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHH
Confidence            97 88999999986 6688889999999999875 22211    344445566666555443

>TIGR00814 stp serine transporter

Probab=98.68  E-value=2.6e-07  Score=84.42  Aligned_cols=197  Identities=12%  Similarity=0.157  Sum_probs=132.7

Q ss_pred             cHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCC--CCCCcchhhhHHHHHHHHHHhhhhhhhhhccccch-----h
Q 024723           41 TVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS--KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE-----D  113 (263)
Q Consensus        41 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~--~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~-----~  113 (263)
                      .+.++..+.+...+||.+|+++|+...+.|++-+||+  +++.+|+..++..+..++|...-.......+.+.-     +
T Consensus       184 ~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~  263 (397)
T TIGR00814       184 FLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQ  263 (397)
T ss_pred             hHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHc
Confidence            4578999999999999999999999844432114333  34445888888888877777665555555443221     1


Q ss_pred             --hhhh---CCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc----cCCccchhHHHHHHHHHHHHHHHH
Q 024723          114 --NILL---SLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL----NFSPTRLLRFVVRNLYVASTMFIG  184 (263)
Q Consensus       114 --~il~---nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~r~~~v~~~~~vA  184 (263)
                        +.+.   |-.++.+...+..+...+.+..|+--.....+|.++..+.+..    ++.+++..+......+.+.++++|
T Consensus       264 nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  343 (397)
T TIGR00814       264 NISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVA  343 (397)
T ss_pred             CcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence              1122   1112345566677777889999999999999999998873211    112233344566677788899999


Q ss_pred             hhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 024723          185 ITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGL  238 (263)
Q Consensus       185 ~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~~~~~~~~ii~~g~  238 (263)
                      ..-|++=++++-+|+-....+.|++|...-.|.-.-++.| ++..++++++.|+
T Consensus       344 ~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~-~~~~~~fv~~~g~  396 (397)
T TIGR00814       344 YINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYR-GRISNVFVTVIGL  396 (397)
T ss_pred             HhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhC-CCcchheeEeeec
Confidence            9999998888866666677899999998877764333322 1245666665553

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=98.67  E-value=6.5e-07  Score=82.08  Aligned_cols=202  Identities=14%  Similarity=0.112  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhhcCCCCCC---CCC--CCCCcchhhhHHHHHHHHHHhhhhhhhhhccccc-----h
Q 024723           43 FNFFSALGDVAFAYAGHNVVLEIQATIPSTPE---KPS--KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV-----E  112 (263)
Q Consensus        43 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~---~p~--~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~-----~  112 (263)
                      .....++|++.+||+.|+.+|++...+|++-+   +++  +++.++++.++..+..++|...-...-..-+.+.     +
T Consensus       209 ~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~  288 (443)
T PRK13629        209 VTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKA  288 (443)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            46888999999999999999999998654322   223  4556688888888777777655544444333221     1


Q ss_pred             h--hhh----hCCCC---c-----hHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhh---hccC--CccchhHHHHH
Q 024723          113 D--NIL----LSLEK---P-----TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK---KLNF--SPTRLLRFVVR  173 (263)
Q Consensus       113 ~--~il----~nl~~---~-----~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~---~~~~--~~~~~~~~~~r  173 (263)
                      +  +++    +.+++   +     .+......+...+.+.+||--.....+|.++.+..+   +.+.  ..++..+....
T Consensus       289 qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~  368 (443)
T PRK13629        289 QNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISM  368 (443)
T ss_pred             hCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHH
Confidence            1  111    11222   1     345666777778899999999999999999988742   1111  12333455666


Q ss_pred             HHHHHHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 024723          174 NLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSP  245 (263)
Q Consensus       174 ~~~v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~~~~~~~~ii~~g~~~~v~gt  245 (263)
                      ..+.+.++++|..-|++=++++-+|+-....+.|++|...-.|.-.-++.| ++..++++++.|++......
T Consensus       369 ~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~i~~~~  439 (443)
T PRK13629        369 IFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLTILNIV  439 (443)
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHHHHHHH
Confidence            777889999999999999999877777778899999998887764333332 22467888888876655433

>PRK11021 putative transporter; Provisional

Probab=98.20  E-value=0.0016  Score=59.75  Aligned_cols=175  Identities=13%  Similarity=0.221  Sum_probs=99.2

Q ss_pred             CCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhh--hhhhccccch--h
Q 024723           38 AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI--GYWMFGNKVE--D  113 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~--gy~~fG~~~~--~  113 (263)
                      .+.++.++..++....|+|.|-......-+|+    |||+| ++.|++..+..++.++|.+....  +...++|...  +
T Consensus       172 ~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k-~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~  246 (410)
T PRK11021        172 GSIEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPER-DFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAA  246 (410)
T ss_pred             CCccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccc
Confidence            34577899999999999999999999999999    89965 46699999999999999988754  3333344211  1


Q ss_pred             ---hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhh--------hccCCccchhHH-HHHHHHHHHHH
Q 024723          114 ---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK--------KLNFSPTRLLRF-VVRNLYVASTM  181 (263)
Q Consensus       114 ---~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~--------~~~~~~~~~~~~-~~r~~~v~~~~  181 (263)
                         .+.+..-. ++...+..+...+..+.+.........+.+...-+.        +.+ +++.+.+- .+...+.....
T Consensus       247 ~~~~~~~~~~G-~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~-~~~tP~~ail~~~~i~~~~~  324 (410)
T PRK11021        247 SLPGIFVQLFG-GYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLS-ARGVPVNALNAVLGCCAVSI  324 (410)
T ss_pred             cHHHHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhc-cCCCcHHHHHHHHHHHHHHH
Confidence               11211111 112223333344444444433333333333322211        111 22233332 22222222222


Q ss_pred             HHH-hhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCC
Q 024723          182 FIG-ITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR  221 (263)
Q Consensus       182 ~vA-~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~  221 (263)
                      ++. ..-.+++++.++..  ....+.|.++.+-.+|+++++
T Consensus       325 l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~~  363 (410)
T PRK11021        325 LLIYALGLNLEALIAYAN--GIFVLIYLLCMLAACKLLKGR  363 (410)
T ss_pred             HHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence            222 22357888777654  345688999888888887553

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=98.10  E-value=0.0015  Score=61.30  Aligned_cols=162  Identities=11%  Similarity=0.117  Sum_probs=85.1

Q ss_pred             HHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccch---hh-------hhhCCC
Q 024723           51 DVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE---DN-------ILLSLE  120 (263)
Q Consensus        51 ~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~---~~-------il~nl~  120 (263)
                      .+.|+|.|-......-+|+    |||+|. ..|++..+..++.++|.+..+.-...-+++..   ++       ......
T Consensus       202 ~~~~af~G~e~~~~~a~E~----knP~r~-iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDV----DNPDKN-YPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAG  276 (474)
T ss_pred             HHHHHHhchhHhHHHHHhc----cCcccc-hhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcC
Confidence            4578999999999999999    899653 56999999999999998766554433332211   01       111111


Q ss_pred             CchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHh-----h---hccCCccchhHHHHHHHH-HHHHHHHHhhcCChh
Q 024723          121 KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV-----K---KLNFSPTRLLRFVVRNLY-VASTMFIGITFPFFG  191 (263)
Q Consensus       121 ~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~-----~---~~~~~~~~~~~~~~r~~~-v~~~~~vA~~ip~~~  191 (263)
                       .++...+..+...+..+.+..-......+.+...-+     +   +.+ +++.+.+-+.-... .....++....|+.+
T Consensus       277 -~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~  354 (474)
T TIGR03813       277 -LSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQ  354 (474)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHH
Confidence             123333444444444444443332222232222211     0   111 22233332222222 222233334467765


Q ss_pred             HHHHhhhhhh--hhhHHHhHhHHHHHHHhC
Q 024723          192 GLLGFFGGFA--FAPTTYFLPCIIWLAIYK  219 (263)
Q Consensus       192 ~v~~lvGs~~--~~~l~~i~P~l~~l~~~~  219 (263)
                      +.++.+.+.+  ...+.|+++.+..+++++
T Consensus       355 ~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~  384 (474)
T TIGR03813       355 AAFQILSQLTVILYLVMYLLMFASAIYLRY  384 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555544433  334678888877777664

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK10746 putative transport protein YifK; Provisional

Probab=98.08  E-value=0.0021  Score=60.11  Aligned_cols=176  Identities=14%  Similarity=0.101  Sum_probs=101.5

Q ss_pred             CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhcccc-ch---hh
Q 024723           39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK-VE---DN  114 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~-~~---~~  114 (263)
                      +..+.++..++....|+|.|-......-.|+    |||+| ++.|+...+.....++|......-......+ ..   ++
T Consensus       196 ~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~----knP~k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp  270 (461)
T PRK10746        196 AGGWKGFLTALCIVVASYQGVELIGITAGEA----KNPQV-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSP  270 (461)
T ss_pred             cccHHHHHHHHHHHHHHhcCHHHHHHHHHHh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCc
Confidence            4557889999999999999999999999999    99965 4668888777777778876543332222211 11   11


Q ss_pred             ---hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc-------cCCccchhHH-HHHHHHHHHHHHH
Q 024723          115 ---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-------NFSPTRLLRF-VVRNLYVASTMFI  183 (263)
Q Consensus       115 ---il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-------~~~~~~~~~~-~~r~~~v~~~~~v  183 (263)
                         ...+... +....+.++...+..+.+.--..+...+.+...-+.+.       .++++.+.+- .+..........+
T Consensus       271 ~v~~~~~~g~-~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~  349 (461)
T PRK10746        271 FVLTFAKIGI-TAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCL  349 (461)
T ss_pred             HHHHHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHH
Confidence               1122221 22334555666666666655555555555554432110       0122222222 2222222223334


Q ss_pred             HhhcCChhHHHHhhhhhhh--hhHHHhHhHHHHHHHhCC
Q 024723          184 GITFPFFGGLLGFFGGFAF--APTTYFLPCIIWLAIYKP  220 (263)
Q Consensus       184 A~~ip~~~~v~~lvGs~~~--~~l~~i~P~l~~l~~~~~  220 (263)
                      ....|+-+.+++.+-++++  ..+.++++++.+++.+++
T Consensus       350 ~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~  388 (461)
T PRK10746        350 NYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRA  388 (461)
T ss_pred             HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456665655555443332  478899999999998765

>PRK10655 potE putrescine transporter; Provisional

Probab=98.04  E-value=0.0035  Score=58.02  Aligned_cols=58  Identities=14%  Similarity=0.118  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhh
Q 024723           42 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGY  104 (263)
Q Consensus        42 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy  104 (263)
                      +.++..++....|+|.|-.....+-.|+    |||+| +..|++..+..++.++|.+......
T Consensus       188 ~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iPrAi~~~~~~~~~~Y~l~~~~~~  245 (438)
T PRK10655        188 FSAVGSSIAMTLWAFLGLESACANSDAV----ENPER-NVPIAVLGGTLGAAVIYIVSTNVIA  245 (438)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCccc-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888999999999999999999999    99965 3569999999999999988765433

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.03  E-value=0.0025  Score=59.24  Aligned_cols=60  Identities=15%  Similarity=0.243  Sum_probs=50.5

Q ss_pred             CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhh
Q 024723           40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGY  104 (263)
Q Consensus        40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy  104 (263)
                      ..+..+..++....|+|.|-......-+|+    |||+| +..|++..+..++.++|.+..+.-.
T Consensus       188 ~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~iPrai~~s~~i~~v~Y~l~~~~~~  247 (445)
T PRK10644        188 GTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATIGGVLIAAVCYVLSSTAIM  247 (445)
T ss_pred             chHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCccc-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788889999999999999999999    99965 3569999999999999998886643

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.02  E-value=0.001  Score=61.74  Aligned_cols=57  Identities=19%  Similarity=0.417  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhh
Q 024723           42 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG  103 (263)
Q Consensus        42 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~g  103 (263)
                      +.++..++....|+|.|-......-+|+    |||+| ++.|++..+..++.++|.+.....
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iP~Ai~~~~~i~~~~Y~l~~~~~  250 (445)
T PRK11357        194 FMALLAGISATSWSYTGMASICYMTGEI----KNPGK-TMPRALIGSCLLVLVLYTLLALVI  250 (445)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCccc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence            5678889999999999999999999999    99975 456999999999999998876543

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.96  E-value=0.0011  Score=61.02  Aligned_cols=172  Identities=13%  Similarity=0.223  Sum_probs=100.1

Q ss_pred             CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchh---hh-
Q 024723           40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED---NI-  115 (263)
Q Consensus        40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~---~i-  115 (263)
                      ..+..++.+++...|+|.|-...+...+|+    || +  +..|++.++..++.++|.+....-....+++..+   +. 
T Consensus       185 ~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~----k~-k--~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~  257 (426)
T PF13520_consen  185 SGWPGFLAGFSVAFFAFSGFEAIASLAEEN----KN-K--TIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSP  257 (426)
T ss_dssp             SSSSHHHHHHHHHGGGGTTTTHHHHGGGGS----SS-H--HHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHH
T ss_pred             ccccchhhHHHHHHhhcccccccccccccc----cc-h--hheeecccchhHHHHHHhhhhheeeecccchhhhcccccc
Confidence            344467899999999999999999999998    55 3  3559999999999999999876655555442211   11 


Q ss_pred             ------hhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc-----cC--CccchhHHHHHHHHHHHHHH
Q 024723          116 ------LLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-----NF--SPTRLLRFVVRNLYVASTMF  182 (263)
Q Consensus       116 ------l~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-----~~--~~~~~~~~~~r~~~v~~~~~  182 (263)
                            .+... +++...+..++..+..+.+.........+.++..-+.+.     .+  +++...+-.+-...+.....
T Consensus       258 ~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~k~~~P~~a~~~~~~i~~i~~  336 (426)
T PF13520_consen  258 SPFAVLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVNKFGTPYNAIILVAVISSILL  336 (426)
T ss_dssp             CHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTSSSSSCHHHHHHHHHHHHHHH
T ss_pred             cccchhhcccc-ccccccccccccccccccccchhhcchhhcccccccccchhhhhhhccccCCceeeehhhhHHHHHHH
Confidence                  11111 224555666777777777777777676666666554321     00  11122222221111111111


Q ss_pred             HHh-hcC--ChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCC
Q 024723          183 IGI-TFP--FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR  221 (263)
Q Consensus       183 vA~-~ip--~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~  221 (263)
                      +.. ..|  +++.+.+..  .....+.++++.+.+++.++++
T Consensus       337 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~  376 (426)
T PF13520_consen  337 LLFLFIPQSSFDILVSLS--SVGYLISYILVILAVLFLRRKR  376 (426)
T ss_dssp             HHTTTSSSSHHHHHHHHH--HHHTHHHHHHHHHHHHHTHHHS
T ss_pred             HHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc
Confidence            111 234  344454433  3334577777777777666543

...

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=97.94  E-value=0.0043  Score=58.08  Aligned_cols=170  Identities=12%  Similarity=0.157  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccc----hh----
Q 024723           42 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV----ED----  113 (263)
Q Consensus        42 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~----~~----  113 (263)
                      +.++..++....|+|.|-.....+-.|.    ||++  ++.|++..+...+.++|.+..+..+...+++.    ++    
T Consensus       194 ~~~~~~~~~~~~~~f~G~e~~~~~a~e~----k~~k--~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~  267 (468)
T TIGR03810       194 MTQVKNMMLVTVWVFIGIEGASMLSARA----EKRS--DVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMA  267 (468)
T ss_pred             HHHHHHHHHHHHHHHHhHhHHhhhHhhc----cCcc--cchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHH
Confidence            4567788899999999999888888887    6643  45599999999999999998876554443211    11    


Q ss_pred             hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhh--------hccCCccchhHHH-HHHHHHHHHHHHH
Q 024723          114 NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK--------KLNFSPTRLLRFV-VRNLYVASTMFIG  184 (263)
Q Consensus       114 ~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~-~r~~~v~~~~~vA  184 (263)
                      ...++.- +++...+..++..++.+.+.--......+.....-+.        +.+ +++.+.+-+ +...+.....++.
T Consensus       268 ~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~  345 (468)
T TIGR03810       268 YVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTT  345 (468)
T ss_pred             HHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence            1222222 2344556666666666666655555444444332211        111 222333322 2222221111111


Q ss_pred             hh-cCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCC
Q 024723          185 IT-FPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR  221 (263)
Q Consensus       185 ~~-ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~  221 (263)
                      .. -+.++.+.++.+  ....+.|.++++.++++++++
T Consensus       346 ~~~~~~~~~l~~~~~--~~~li~y~~~~~~~~~l~~~~  381 (468)
T TIGR03810       346 LFSEQAYNFAISLAT--SAILVPYLWSAAYQVKLSWRG  381 (468)
T ss_pred             HccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence            11 123555555543  245689999999999886543

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=97.93  E-value=0.0037  Score=59.90  Aligned_cols=170  Identities=12%  Similarity=0.089  Sum_probs=100.4

Q ss_pred             CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhcccc---chhh-
Q 024723           39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK---VEDN-  114 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~---~~~~-  114 (263)
                      |..+.+++.+.....|+|.|-......-.|+    |||+| ++.+++..++.+++++|.++...-...-..+   ..++ 
T Consensus       227 p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~----knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~  301 (557)
T TIGR00906       227 PYGFTGVLSGAATCFFAFIGFDAIATTGEEV----KNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPF  301 (557)
T ss_pred             CcchHHHHHHHHHHHHHHhhHHHHHHhHHhc----cCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHH
Confidence            4456789999999999999999999999999    99976 4669999999999999998875543322211   1112 


Q ss_pred             --hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh--------ccCCccchhHHHHHHHHHHHHHHHH
Q 024723          115 --ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK--------LNFSPTRLLRFVVRNLYVASTMFIG  184 (263)
Q Consensus       115 --il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~r~~~v~~~~~vA  184 (263)
                        ...... .++...+..+......+.+.........+.+...-+.+        .+.+.+...+-.+-..  ..+.+++
T Consensus       302 ~~a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~--iv~~il~  378 (557)
T TIGR00906       302 PVAFEYVG-WGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSG--AIAALMA  378 (557)
T ss_pred             HHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHH--HHHHHHH
Confidence              222222 23444555555555555555555555555554432211        1112222222222111  2223333


Q ss_pred             hhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhC
Q 024723          185 ITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYK  219 (263)
Q Consensus       185 ~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~  219 (263)
                      . +.+++.+.++..  .+..+.|.++++..+.+|+
T Consensus       379 ~-~~~~~~l~~l~s--ig~ll~y~lv~~~~l~lR~  410 (557)
T TIGR00906       379 F-LFDLKALVDLLS--IGTLLAYSLVAACVLILRY  410 (557)
T ss_pred             H-HcCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence            3 335666666552  3356889999888777764

>TIGR00909 2A0306 amino acid transporter

Probab=97.86  E-value=0.0074  Score=55.65  Aligned_cols=170  Identities=10%  Similarity=0.024  Sum_probs=98.7

Q ss_pred             CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhcccc--ch--h-
Q 024723           39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK--VE--D-  113 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~--~~--~-  113 (263)
                      +..+.++..++....|+|.|........+|+    |||+| +..|++..+..++.++|.+...........+  .+  + 
T Consensus       191 ~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p~r-~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~  265 (429)
T TIGR00909       191 PMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNPER-DIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAP  265 (429)
T ss_pred             CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCccc-cccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcH
Confidence            4456788999999999999999999999999    89864 4559999999999999998875543322111  00  1 


Q ss_pred             --hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh--------ccCCccchhHHHHHHHHHHHHHHH
Q 024723          114 --NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK--------LNFSPTRLLRFVVRNLYVASTMFI  183 (263)
Q Consensus       114 --~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~r~~~v~~~~~v  183 (263)
                        .+..+.. +++...+..+...+..+.+..-......+.+...-+.+        .+.+.+.+.+-.+-..  ..+. +
T Consensus       266 ~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~--~i~~-~  341 (429)
T TIGR00909       266 LSLVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFS--LTAA-L  341 (429)
T ss_pred             HHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHH--HHHH-H
Confidence              1222222 24455566677777777766665555555554433211        1111122222111111  1111 1


Q ss_pred             HhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhC
Q 024723          184 GITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYK  219 (263)
Q Consensus       184 A~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~  219 (263)
                      .....+++.+.++.+  .+..+.|++.++..+++++
T Consensus       342 ~~~~~~~~~l~~~~~--~~~~~~y~~~~~a~~~lr~  375 (429)
T TIGR00909       342 LASLVPLEGLAELTS--IGTLIAFAAVNVAVIILRR  375 (429)
T ss_pred             HHHHcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence            122356777776553  2335677777666666553

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=97.83  E-value=0.0057  Score=57.35  Aligned_cols=59  Identities=8%  Similarity=0.118  Sum_probs=49.0

Q ss_pred             cHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhh
Q 024723           41 TVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYW  105 (263)
Q Consensus        41 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~  105 (263)
                      .+.++..++....|+|.|-......-+|+    ||  +++..|++..+..++.++|.+.......
T Consensus       197 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~--~r~iPrai~~~~~i~~~~Yil~~~~~~~  255 (473)
T TIGR00905       197 VFSQVKNTMLVTLWVFIGIEGAVVSSGRA----KN--KSDVGKATVLGTLGALVIYILITLLSLG  255 (473)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHH----hc--cccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46678889999999999999999999999    77  3345599999999999999888765433

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.83  E-value=0.0074  Score=55.94  Aligned_cols=63  Identities=8%  Similarity=0.110  Sum_probs=53.2

Q ss_pred             CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhh
Q 024723           39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWM  106 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~  106 (263)
                      +....++..++....|+|.|-......-.|+    |||+| +..|+...+...+.++|.+........
T Consensus       183 ~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~r-~iPrAi~~~~~iv~ilYil~~~~~~~~  245 (435)
T PRK10435        183 TTDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPKR-TVPLATMLGTGLAGIIYIAATQVISGM  245 (435)
T ss_pred             CchHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCccc-cccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4557799999999999999999999999999    99964 355999999999999999888655433

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=97.79  E-value=0.0075  Score=56.14  Aligned_cols=173  Identities=14%  Similarity=0.120  Sum_probs=102.5

Q ss_pred             CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhh--hcccc---chh
Q 024723           39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYW--MFGNK---VED  113 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~--~fG~~---~~~  113 (263)
                      |..+.++..++....|+|.|-......-.|+    |||+| ++.|++..+.....++|.+..+.--.  .+++.   ..+
T Consensus       177 p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~  251 (446)
T PRK10197        177 PNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEK-HIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVG  251 (446)
T ss_pred             cccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-hHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccC
Confidence            4567799999999999999999999999999    89975 45688888888888888876544222  22221   011


Q ss_pred             ---hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc-------cCCccchhHHH-HHHHHHHHHHH
Q 024723          114 ---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-------NFSPTRLLRFV-VRNLYVASTMF  182 (263)
Q Consensus       114 ---~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~-~r~~~v~~~~~  182 (263)
                         ...++... ++...+.+....+..+.+..-..+...+.+...-+.+.       .++++.+.+-+ +.........+
T Consensus       252 ~~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l  330 (446)
T PRK10197        252 SYRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVV  330 (446)
T ss_pred             cHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHH
Confidence               22333332 34445566666666666666655665555554332110       01222223322 22222222222


Q ss_pred             HHhhcC--ChhHHHHhhhhhhhhhHHHhHhHHHHHHHhC
Q 024723          183 IGITFP--FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYK  219 (263)
Q Consensus       183 vA~~ip--~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~  219 (263)
                      .....|  .++.++++.+...  .+.|+++++.+++.++
T Consensus       331 ~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~  367 (446)
T PRK10197        331 VNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK  367 (446)
T ss_pred             HHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            222233  3666777665444  4889999988888875

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.75  E-value=0.0029  Score=58.73  Aligned_cols=178  Identities=16%  Similarity=0.178  Sum_probs=113.6

Q ss_pred             CCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhh
Q 024723           38 AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILL  117 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~  117 (263)
                      ...+..++..++-.-.|+|.|=.++=.+-.|+    |||+| ++.++..+++.++++.|.++=+..+.+-   +.++++.
T Consensus       199 ~~~~~g~i~lafysglfa~~GWd~lN~vteEi----knP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vl---s~~e~l~  270 (479)
T KOG1287|consen  199 SDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI----KNPRR-TLPRAILISIPLVTVIYVLVNVAYFTVL---SPDEILS  270 (479)
T ss_pred             CcCchHHHHHHHHHhhhcccCchhhccchHhh----cCccc-cchHHHHHhhHHHHHHHHHhHhheeEec---CHHHhcc
Confidence            34556688899999999999999999999999    99955 5779999999999999999877655543   2222222


Q ss_pred             CC---------CCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCC----ccchhHH--HHHHHHHHHHHH
Q 024723          118 SL---------EKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFS----PTRLLRF--VVRNLYVASTMF  182 (263)
Q Consensus       118 nl---------~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~----~~~~~~~--~~r~~~v~~~~~  182 (263)
                      +-         --+++. ..+-++..++.+.+.--.++...+.+...-++. +-+    ....++.  ...++......+
T Consensus       271 S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG-~LP~~~s~i~~~~~TP~~allf~~~~~i  348 (479)
T KOG1287|consen  271 SDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREG-HLPAFFSMISVRRFTPRPALLFSGLLSI  348 (479)
T ss_pred             cchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHcc-CccHHHHhhcCCCCCChHHHHHHHHHHH
Confidence            11         012222 344555555555555544444444433332221 100    0000111  122333444455


Q ss_pred             HHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCch
Q 024723          183 IGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSL  225 (263)
Q Consensus       183 vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~~  225 (263)
                      +....+|+..+++.++=.-.....+.+=+++|+|.++++..++
T Consensus       349 ~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rP  391 (479)
T KOG1287|consen  349 VLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRP  391 (479)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            5566779999999998777777888889999999988876654

>PRK10249 phenylalanine transporter; Provisional

Probab=97.71  E-value=0.016  Score=54.14  Aligned_cols=172  Identities=16%  Similarity=0.219  Sum_probs=96.8

Q ss_pred             CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccc----hhh
Q 024723           39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV----EDN  114 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~----~~~  114 (263)
                      +..+.++..++....|+|.|-......-+|+    |||+| +..|++..+.....++|......-....+++.    .++
T Consensus       205 ~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~~P~k-~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p  279 (458)
T PRK10249        205 ATGWNGLILSLAVIMFSFGGLELIGITAAEA----RDPEK-SIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSP  279 (458)
T ss_pred             CCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCHhh-HHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCc
Confidence            4567889999999999999999999999999    89976 45688888888888888775443332322211    111


Q ss_pred             ---hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhh--------hccCCccchhHH-HHHHHHHHHHHH
Q 024723          115 ---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK--------KLNFSPTRLLRF-VVRNLYVASTMF  182 (263)
Q Consensus       115 ---il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~--------~~~~~~~~~~~~-~~r~~~v~~~~~  182 (263)
                         +.++.. .++...+..++..+..+.+..-......+.+...-+.        +.+ +++.+.+- .+..++.....+
T Consensus       280 ~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l  357 (458)
T PRK10249        280 FVMIFHNLD-SNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVL  357 (458)
T ss_pred             HHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHH
Confidence               112222 1233444455555555555444444444444333211        111 12222332 223222222222


Q ss_pred             HHhhcCC--hhHHHHhhhhhhhhhHHHhHhHHHHHHHhC
Q 024723          183 IGITFPF--FGGLLGFFGGFAFAPTTYFLPCIIWLAIYK  219 (263)
Q Consensus       183 vA~~ip~--~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~  219 (263)
                      +....|+  ++.+.++.+  ....+.|++|++.+++.++
T Consensus       358 ~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~  394 (458)
T PRK10249        358 INYLLPQKAFGLLMALVV--ATLLLNWIMICLAHLRFRA  394 (458)
T ss_pred             HHHhChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            3223332  444444432  2456999999999998874

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.69  E-value=0.013  Score=55.55  Aligned_cols=51  Identities=12%  Similarity=0.037  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhh
Q 024723           45 FFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVA  100 (263)
Q Consensus        45 ~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g  100 (263)
                      ....+....|+|.|-......-+|+    |||+| +..|++..+..++.++|.+..
T Consensus       196 ~~~~~~~~~faf~G~E~~a~~a~E~----knP~r-~~PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       196 TLVVFVAFIGAYMGVEASASHINEL----ENPGR-DYPLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHc----cCCcc-cccHHHHHHHHHHHHHHHHHH
Confidence            4445556789999999999999999    99965 355999988888888887644

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PRK11387 S-methylmethionine transporter; Provisional

Probab=97.61  E-value=0.016  Score=54.26  Aligned_cols=173  Identities=9%  Similarity=0.103  Sum_probs=93.3

Q ss_pred             CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccc-cc---hh--
Q 024723           40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN-KV---ED--  113 (263)
Q Consensus        40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~-~~---~~--  113 (263)
                      ....++..++....|+|.|-......-.|+    |||+| ++.|++..+.....++|.......-..... +.   ++  
T Consensus       203 ~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~  277 (471)
T PRK11387        203 HGGLPILMTMVAVNFAFSGTELIGIAAGET----ENPAK-VIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPF  277 (471)
T ss_pred             ccHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChH
Confidence            344578888899999999999999999999    99965 456888888888888898876543333321 11   11  


Q ss_pred             -hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhh--------hccCCccchhHHHHHHHHHHHHHHHH
Q 024723          114 -NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK--------KLNFSPTRLLRFVVRNLYVASTMFIG  184 (263)
Q Consensus       114 -~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~~r~~~v~~~~~vA  184 (263)
                       .+.++.. .++...+..++..+..+.+.--......+.+...-+.        +.+ +++...+-++-........++.
T Consensus       278 ~~~~~~~g-~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~  355 (471)
T PRK11387        278 VLVFEKVG-IPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFS  355 (471)
T ss_pred             HHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHH
Confidence             2222332 2334445555555555555444444444444333221        111 1222223222111111111222


Q ss_pred             hhcCChhHHHHhhhhhh--hhhHHHhHhHHHHHHHhCC
Q 024723          185 ITFPFFGGLLGFFGGFA--FAPTTYFLPCIIWLAIYKP  220 (263)
Q Consensus       185 ~~ip~~~~v~~lvGs~~--~~~l~~i~P~l~~l~~~~~  220 (263)
                      ...+. ++.++.+.++.  ...+.|+++.+.+++++++
T Consensus       356 ~~~~~-~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~  392 (471)
T PRK11387        356 SVVAP-DTVFVALSAISGFAVVAVWLSICASHFMFRRR  392 (471)
T ss_pred             HhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222 33333332222  3346788898888887654

>PRK10836 lysine transporter; Provisional

Probab=97.60  E-value=0.028  Score=52.93  Aligned_cols=58  Identities=21%  Similarity=0.241  Sum_probs=47.2

Q ss_pred             cHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhh
Q 024723           41 TVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG  103 (263)
Q Consensus        41 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~g  103 (263)
                      .+..+..+.....|+|.|-......-.|+    |||+| ++.|++..++..+.++|......-
T Consensus       203 g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrAi~~~~~~v~~~Yvl~~~~~  260 (489)
T PRK10836        203 GFAAMIGVAMIVGFSFQGTELIGIAAGES----EDPAK-NIPRAVRQVFWRILLFYVFAILII  260 (489)
T ss_pred             cHHHHHHHHHHHHHHHccHHHHHHHHHHh----cCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666777789999999999999999    99965 466888899999999999776543

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=97.60  E-value=0.038  Score=51.20  Aligned_cols=171  Identities=14%  Similarity=0.259  Sum_probs=100.1

Q ss_pred             CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhcccc-chh-----
Q 024723           40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK-VED-----  113 (263)
Q Consensus        40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~-~~~-----  113 (263)
                      .....+..++....++|.|-....+.-+|+    |||+|. ..|....+...+.++|......-....+++ ...     
T Consensus       198 ~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~----knp~r~-ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~  272 (466)
T COG0531         198 GSFGGILAAILLAFFAFTGFEAIATLAEEV----KNPKRT-IPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSA  272 (466)
T ss_pred             chHHHHHHHHHHHHHHhhcHHHHHHHHHHh----cCcccc-ccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCc
Confidence            344578999999999999999999999999    888655 459999999999999999888777766652 111     


Q ss_pred             h---hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh--------ccCCccchhHHHHHHHHHHHHHH
Q 024723          114 N---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK--------LNFSPTRLLRFVVRNLYVASTMF  182 (263)
Q Consensus       114 ~---il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~r~~~v~~~~~  182 (263)
                      +   ...... +++...+..+...+..+.+..-......+.+...-+.+        .+++.+...+-..-...+..  .
T Consensus       273 p~~~~~~~~~-g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~--~  349 (466)
T COG0531         273 PLALAALFGG-GNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISL--I  349 (466)
T ss_pred             cHHHHHHHcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHH--H
Confidence            1   111111 13445556666666666665444444333333322211        11111122222222222222  1


Q ss_pred             HHhhcC----ChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCC
Q 024723          183 IGITFP----FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP  220 (263)
Q Consensus       183 vA~~ip----~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~  220 (263)
                      +....+    .++.+.++.  .....+.|.++.+..++.+++
T Consensus       350 l~~~~~~~~~~~~~l~~~~--~~~~~~~y~~~~~~~~~~~~~  389 (466)
T COG0531         350 LLLLFPLSSIAFNALVSLA--SVAFLIAYLLVALALLVLRRK  389 (466)
T ss_pred             HHHHhhccccHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence            222222    244444443  344578999999998888765

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.60  E-value=0.012  Score=55.58  Aligned_cols=60  Identities=13%  Similarity=0.255  Sum_probs=51.0

Q ss_pred             CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhh
Q 024723           40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGY  104 (263)
Q Consensus        40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy  104 (263)
                      .+..++..++....|+|.|-.....+-.|+    |||+| +..|++..+..++.++|.+....-.
T Consensus       232 ~~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP~r-~iPrAi~~s~~~v~~~Y~l~~~a~~  291 (501)
T TIGR00911       232 TSAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNPYR-TLPIAIIISMPIVTFIYVLTNIAYF  291 (501)
T ss_pred             CcHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788899999999999999999999999    89965 3559999999999999999865443

>PRK15049 L-asparagine permease; Provisional

Probab=97.57  E-value=0.017  Score=54.65  Aligned_cols=174  Identities=10%  Similarity=0.095  Sum_probs=98.6

Q ss_pred             CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccc-cc---hhh
Q 024723           39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN-KV---EDN  114 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~-~~---~~~  114 (263)
                      |..+.++..++....|+|.|-......-.|+    |||+| +..|++..++....++|............. +.   .++
T Consensus       216 p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~----knP~r-~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP  290 (499)
T PRK15049        216 PHGLLPALVLIQGVVFAFASIEMVGTAAGEC----KDPQT-MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSP  290 (499)
T ss_pred             cccHHHHHHHHHHHHHHHhhHHHHHHHHHHh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCH
Confidence            4455667777888999999999999999999    99976 355888888888888887765543333221 11   122


Q ss_pred             h---hhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc-------cCCccchhHH-HHHHHHHHHHHHH
Q 024723          115 I---LLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-------NFSPTRLLRF-VVRNLYVASTMFI  183 (263)
Q Consensus       115 i---l~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-------~~~~~~~~~~-~~r~~~v~~~~~v  183 (263)
                      .   .+... .++...+.++...+..+.+.--..+...+.+..+-+.+.       .++++.+.+- ++..++.....++
T Consensus       291 ~~~~~~~~g-~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l  369 (499)
T PRK15049        291 FVTFFSKLG-VPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFL  369 (499)
T ss_pred             HHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            2   22222 233445556666666666655555555555544332110       0122223332 2222222222223


Q ss_pred             HhhcCC--hhHHHHhhhhhhhhhHHHhHhHHHHHHHhCC
Q 024723          184 GITFPF--FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP  220 (263)
Q Consensus       184 A~~ip~--~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~  220 (263)
                      ....|+  ++.++++.+  .+..+.|.+|.+.+++.|++
T Consensus       370 ~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R~~  406 (499)
T PRK15049        370 NYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLRKA  406 (499)
T ss_pred             HhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence            233332  455555553  44578999999999988753

>TIGR00908 2A0305 ethanolamine permease

Probab=97.56  E-value=0.048  Score=50.55  Aligned_cols=58  Identities=14%  Similarity=0.210  Sum_probs=47.8

Q ss_pred             CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhh
Q 024723           39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVAL  101 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~  101 (263)
                      +..+.++..++....|+|.|.......-+|+    |||+|. ..|++..+..++.++|...-.
T Consensus       187 ~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r~-iprai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       187 PGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKRD-IPRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcccc-cCHHHHHHHHHHHHHHHHHHH
Confidence            3455688899999999999999999999999    899653 558988888888888876644

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=97.54  E-value=0.03  Score=52.44  Aligned_cols=175  Identities=14%  Similarity=0.130  Sum_probs=94.0

Q ss_pred             CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccc-cc---hhh
Q 024723           39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN-KV---EDN  114 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~-~~---~~~  114 (263)
                      |..+.++..++....|+|.|-......-+|+    |||+|. ..|+...+.....+.|.+....-+..-+. +.   +++
T Consensus       207 p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----knP~r~-iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p  281 (469)
T PRK11049        207 PKGLSGFFAGFQIAVFAFVGIELVGTTAAET----KDPEKS-LPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSP  281 (469)
T ss_pred             cccHHHHHHHHHHHHHHHhcHHHHHHHHHHh----cCHhhH-HHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCc
Confidence            4556789999999999999999999999999    999753 55787766666677777655544322111 11   111


Q ss_pred             ---hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhh--------hccCCccchhHHHH-HHHHHHHHHH
Q 024723          115 ---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK--------KLNFSPTRLLRFVV-RNLYVASTMF  182 (263)
Q Consensus       115 ---il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~~-r~~~v~~~~~  182 (263)
                         ...... .++...+..++..+..+.+.--......+.+...-+.        +.+ +++.+.+-++ ..++.....+
T Consensus       282 ~~~~~~~~g-~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~  359 (469)
T PRK11049        282 FVELFVLVG-LPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVV  359 (469)
T ss_pred             HHHHHHHcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHH
Confidence               111111 1233445555555555554433333433333333221        111 1223333222 2222222233


Q ss_pred             HHhhcCChhHHHHhhhhh--hhhhHHHhHhHHHHHHHhCC
Q 024723          183 IGITFPFFGGLLGFFGGF--AFAPTTYFLPCIIWLAIYKP  220 (263)
Q Consensus       183 vA~~ip~~~~v~~lvGs~--~~~~l~~i~P~l~~l~~~~~  220 (263)
                      +....|+..+..+.+-++  ....+.|.++.+.+++++++
T Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~  399 (469)
T PRK11049        360 LLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQ  399 (469)
T ss_pred             HHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344566654444433222  23457888888888887654

>PRK10238 aromatic amino acid transporter; Provisional

Probab=97.51  E-value=0.05  Score=50.79  Aligned_cols=173  Identities=12%  Similarity=0.166  Sum_probs=93.6

Q ss_pred             CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhh--hhhhcccc--chhh
Q 024723           39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI--GYWMFGNK--VEDN  114 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~--gy~~fG~~--~~~~  114 (263)
                      +..+.++..+++...|+|.|-......-.|+    |||+| +..|++..+.....+.|...-..  +...+++-  ..++
T Consensus       196 ~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~----knP~r-~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP  270 (456)
T PRK10238        196 PHGFTGLVMMMAIIMFSFGGLELVGITAAEA----DNPEQ-SIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSP  270 (456)
T ss_pred             cccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCc
Confidence            4456688888999999999999999999999    89965 35588776666666666543222  11122211  1111


Q ss_pred             ---hhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh--------ccCCccchhHHHH-HHHHHHHHHH
Q 024723          115 ---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK--------LNFSPTRLLRFVV-RNLYVASTMF  182 (263)
Q Consensus       115 ---il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~-r~~~v~~~~~  182 (263)
                         +..+... .+...+.+....+..+.+..-..+...+.+...-+.+        .+ +++.+.+-++ ..++.....+
T Consensus       271 ~~~~~~~~g~-~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l  348 (456)
T PRK10238        271 FVLIFHELGD-TFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVL  348 (456)
T ss_pred             HHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHH
Confidence               2222322 2344445555555555555444555555544432211        11 2223333222 2222222222


Q ss_pred             HHhhcC--ChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCC
Q 024723          183 IGITFP--FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP  220 (263)
Q Consensus       183 vA~~ip--~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~  220 (263)
                      +....|  .++.+.++.+  .+..+.|.+|.+.+++.+++
T Consensus       349 ~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~~  386 (456)
T PRK10238        349 INYLAPESAFGLLMALVV--SALVINWAMISLAHMKFRRA  386 (456)
T ss_pred             HHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            212233  2455555543  34568999999999988764

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=97.42  E-value=0.043  Score=51.03  Aligned_cols=60  Identities=17%  Similarity=0.199  Sum_probs=48.4

Q ss_pred             CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhh
Q 024723           39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG  103 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~g  103 (263)
                      +..+.++..++....|+|.|-......-.|+    |||+| +..|++..+.....++|.+.....
T Consensus       197 ~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~----k~P~r-~iPrAi~~~~~~~~~~y~l~~~~~  256 (452)
T TIGR01773       197 PNGIGAVLLAILVTMFSFMGTEIVTIAAAES----SNPIK-SITRATNSVIWRIIVFYLGSIFIV  256 (452)
T ss_pred             cccHHHHHHHHHHHHHHhccHHHHhHHHHhh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456689999999999999999999999999    99965 355887777777788888764433

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10580 proY putative proline-specific permease; Provisional

Probab=97.35  E-value=0.07  Score=49.75  Aligned_cols=59  Identities=17%  Similarity=0.292  Sum_probs=46.6

Q ss_pred             CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhh
Q 024723           39 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI  102 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~  102 (263)
                      +..+.++..++....|+|.|-......-.|+    |||+|. ..|+...+.....++|......
T Consensus       195 ~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~k~-iPrAi~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        195 SNGWLGMVMSLQMVMFAYGGIEIIGITAGEA----KDPEKS-IPRAINSVPMRILVFYVGTLFV  253 (457)
T ss_pred             CcchHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            4456788999999999999999999999999    899763 4477777766667777666433

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=97.34  E-value=0.1  Score=48.86  Aligned_cols=56  Identities=16%  Similarity=0.280  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhh
Q 024723           42 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI  102 (263)
Q Consensus        42 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~  102 (263)
                      +.++..++....|+|.|-......-+|+    |||+| +..|++..+...+.++|.+....
T Consensus       196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~~~~~Y~l~~~~  251 (478)
T TIGR00913       196 FKGVCSVFVTAAFSFGGTELVALTAGEA----ANPRK-SIPRAAKRTFWRILVFYILTLFL  251 (478)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHhh----cChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999    99965 45689999999999999987543

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.23  E-value=0.17  Score=47.55  Aligned_cols=60  Identities=18%  Similarity=0.274  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhcc
Q 024723           44 NFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFG  108 (263)
Q Consensus        44 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG  108 (263)
                      .+..++....|+|.|-......-+|+    |||+| ++.|++..+..++.+++.+..+.-+...+
T Consensus       218 ~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~  277 (482)
T TIGR00907       218 AFLLGLLNPAWSMTGYDGTAHMAEEI----ENPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMG  277 (482)
T ss_pred             hhhhhhhhhHHHhcCcchhhHHHHhc----CChhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            56666677889999999999999999    99965 46688888887766554433333333333

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=96.97  E-value=0.35  Score=45.66  Aligned_cols=55  Identities=25%  Similarity=0.407  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhh
Q 024723           43 FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI  102 (263)
Q Consensus        43 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~  102 (263)
                      .++..++....|+|.|-......-+|+    |||+| +..|++..+...+.++|.+....
T Consensus       211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~----~~p~~-~~p~ai~~~~~~~~~~y~l~~~~  265 (496)
T PRK15238        211 IAVLSFVVFAIFAYGGIEAVGGLVDKT----ENPEK-NFPKGIIIAAIVISIGYSLAIFL  265 (496)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHhc----cCCCc-cccHHHHHHHHHHHHHHHHHHHH
Confidence            357778888999999999999999999    89965 35699999999999999986543

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=96.80  E-value=0.038  Score=50.87  Aligned_cols=177  Identities=12%  Similarity=0.146  Sum_probs=103.3

Q ss_pred             CCCCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHH-----HHhhhhhhhhhcccc
Q 024723           36 KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALC-----YFPVALIGYWMFGNK  110 (263)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~-----Y~~~g~~gy~~fG~~  110 (263)
                      ...|..+.+++.++-+.+|||++...+----.|-    +||+|. .+|+..--..=..++     .++..++-+-.++++
T Consensus       196 GffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et----~dP~k~-ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~  270 (462)
T COG1113         196 GFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA----KDPEKA-IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGED  270 (462)
T ss_pred             CcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh----cChhhH-HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCC
Confidence            3468999999999999999999988887777777    899764 335444322223333     445555555566554


Q ss_pred             chh--hhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc------c-CCccch-hHHHHHHHHHHHH
Q 024723          111 VED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL------N-FSPTRL-LRFVVRNLYVAST  180 (263)
Q Consensus       111 ~~~--~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~------~-~~~~~~-~~~~~r~~~v~~~  180 (263)
                      .++  .++..+.- ++...+.|.........+.-=-.+...+++..+-.+..      + +++.-. ............+
T Consensus       271 ~SPFV~~f~~iGi-~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~  349 (462)
T COG1113         271 GSPFVTVFSLIGI-PFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLG  349 (462)
T ss_pred             CCcHHHHHHHcCC-cccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHH
Confidence            433  23333322 12333445544455555554455566666665532211      0 111222 3345566667777


Q ss_pred             HHHHhhcCChhHHHHhhhhhhh--hhHHHhHhHHHHHHHhCC
Q 024723          181 MFIGITFPFFGGLLGFFGGFAF--APTTYFLPCIIWLAIYKP  220 (263)
Q Consensus       181 ~~vA~~ip~~~~v~~lvGs~~~--~~l~~i~P~l~~l~~~~~  220 (263)
                      .++....|  +.++.++-+..+  ....+.+=.+.|+|.+|.
T Consensus       350 V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~  389 (462)
T COG1113         350 VVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRKA  389 (462)
T ss_pred             HHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888899  445554433332  345556667889998873

>TIGR00930 2a30 K-Cl cotransporter

Probab=96.66  E-value=0.22  Score=50.80  Aligned_cols=54  Identities=20%  Similarity=0.386  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhh
Q 024723           44 NFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI  102 (263)
Q Consensus        44 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~  102 (263)
                      ++...++++.++|.|-.....+-.|+    |||++ ...++...++.+++++|+++.+.
T Consensus       281 ~f~~~~ai~F~A~tGi~agan~sgEl----KnP~r-~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       281 GFFSLFGIFFPSVTGILAGANISGDL----KDPQK-AIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc----cChhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            47888899999999999999999999    99975 46699999999999999999753

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=96.45  E-value=0.051  Score=51.94  Aligned_cols=176  Identities=12%  Similarity=0.119  Sum_probs=108.3

Q ss_pred             CCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhh--hcccc-chhh
Q 024723           38 AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYW--MFGNK-VEDN  114 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~--~fG~~-~~~~  114 (263)
                      .|..+.++...+-+..|+|.|-..+-..-.|-    |||+|. ..+++..++..+.++|.+..+.--+  .|.|. ..++
T Consensus       227 ~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~----kNP~k~-IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~  301 (554)
T KOG1286|consen  227 FPFGFKGVLSGAATAFFSFIGFELVATTAEEA----KNPRKA-IPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPG  301 (554)
T ss_pred             CCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc----cCCccc-ccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCC
Confidence            34458899999999999999988888888887    999754 5689999999999999988854332  23220 1111


Q ss_pred             h------h--hCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccC----CccchhHHHHHHHHH-HHHH
Q 024723          115 I------L--LSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNF----SPTRLLRFVVRNLYV-ASTM  181 (263)
Q Consensus       115 i------l--~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~r~~~v-~~~~  181 (263)
                      .      .  -+.+.-.....+.+++..+.++.+---..++.-+.+..+-....-.    +.++..+=...+++. ++.+
T Consensus       302 ~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~  381 (554)
T KOG1286|consen  302 AALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGA  381 (554)
T ss_pred             CccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHH
Confidence            1      0  0111112222478888888888888888888888877764322100    011111212222222 2233


Q ss_pred             HHHhhcC-----ChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCC
Q 024723          182 FIGITFP-----FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP  220 (263)
Q Consensus       182 ~vA~~ip-----~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~  220 (263)
                      +.+....     .|+.++++.|  .+..+++.+=++.|++.|+.
T Consensus       382 l~~~~~~~~~~~~f~~L~~~~s--i~tl~~w~~i~~~~i~~R~a  423 (554)
T KOG1286|consen  382 LAALNFSLGAATVFNWLVNLSS--IGTLFAWTLVALSHLRFRYA  423 (554)
T ss_pred             HHHHHhccccchHHHHHHHHHh--HHHHHHHHHHHHHHeeeeec
Confidence            3333322     2588888875  34567888888888887643

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=96.25  E-value=0.3  Score=43.89  Aligned_cols=164  Identities=15%  Similarity=0.200  Sum_probs=97.1

Q ss_pred             cHHHHHHHHH-HHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchh------
Q 024723           41 TVFNFFSALG-DVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED------  113 (263)
Q Consensus        41 ~~~~~~~~~~-~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~------  113 (263)
                      ++.+...+.- ...++|.+.........++    +||++.+  |....+..++.++|...-...-..+|.+..+      
T Consensus       176 g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~~~~--k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~  249 (359)
T TIGR00912       176 GLSPILKGAYPVVTFAFGEIEIFFLLFPLL----SKKKKIK--KSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPT  249 (359)
T ss_pred             CcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----CChhhhH--HHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccH
Confidence            3445555443 7888998877777777887    7776654  8999999999999998888877777754332      


Q ss_pred             -hhhhCCCCchHH---HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhhcCC
Q 024723          114 -NILLSLEKPTWL---IVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPF  189 (263)
Q Consensus       114 -~il~nl~~~~~~---~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~ip~  189 (263)
                       +..+..+-++..   ..+.-..-....+...-+..+.....+++.++.+++      +....-...  ....+ ...|+
T Consensus       250 ~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~-~~~~~  320 (359)
T TIGR00912       250 LELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKY------SILILPVLM--VIFSI-SFFPD  320 (359)
T ss_pred             HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc------chhHHHHHH--HHHHH-HHccc
Confidence             122222222222   223344456677777778888888888888765421      112211111  12222 34565


Q ss_pred             hhHHHHhhh---hhhhhhHHHhHhHHHHHHHhC
Q 024723          190 FGGLLGFFG---GFAFAPTTYFLPCIIWLAIYK  219 (263)
Q Consensus       190 ~~~v~~lvG---s~~~~~l~~i~P~l~~l~~~~  219 (263)
                      -.+-.....   ...+....+++|.++.+...-
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~P~ll~~i~~i  353 (359)
T TIGR00912       321 SSNQLFDYLEFLPIIAIVFFLLLPLILFIIVKI  353 (359)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222122222   233456777899987766543

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=96.12  E-value=1.2  Score=41.72  Aligned_cols=61  Identities=18%  Similarity=0.055  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhcc
Q 024723           43 FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFG  108 (263)
Q Consensus        43 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG  108 (263)
                      ..+..+.....|+|.|-.....+-+|+    |||+|. ..|++..+..+..++|.+.-+......+
T Consensus       213 ~~~~~~~~~~~~~f~G~e~~~~~aeE~----knP~r~-iPrai~~s~~i~~~~~~~~~~~~~~~~~  273 (475)
T TIGR03428       213 GAFLVSGLMAAYVMVGFGSAGELSEET----KNPRRV-APRTILTALSVSALGGGLMILGALMAAP  273 (475)
T ss_pred             HHHHHHHHHHHHHhcCcchHHHHHHHh----cCcchh-hhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            456667777889999999999999999    999664 5688888888776665554444333333

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=95.65  E-value=0.017  Score=54.11  Aligned_cols=65  Identities=18%  Similarity=0.284  Sum_probs=54.6

Q ss_pred             CcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccc
Q 024723           40 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN  109 (263)
Q Consensus        40 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~  109 (263)
                      .++.++..++....++|.|-......-.|.    |||+|. +.|+...+.....++|.+.....-...+.
T Consensus       197 ~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k~-IPra~~~~~~~~~v~y~~~~~~~~~~~~~  261 (478)
T PF00324_consen  197 GGFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRKT-IPRATLLSVLRIGVFYVLTSYALTLAVPY  261 (478)
T ss_pred             cchhHHHHhhhhhhcccccccccccccccC----CCchhh-hhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence            347899999999999999999999999998    899654 66999999999999999887765555554

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=92.80  E-value=7  Score=36.30  Aligned_cols=114  Identities=16%  Similarity=0.065  Sum_probs=59.7

Q ss_pred             CCcHHHHHHHHHHHHHHh-cCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhh----ccccchh
Q 024723           39 AGTVFNFFSALGDVAFAY-AGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWM----FGNKVED  113 (263)
Q Consensus        39 ~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~----fG~~~~~  113 (263)
                      +....++..+++..+=.+ ..-.+.+...+.+    |+|++..  +...+++....+....+|..+-..    +|+...+
T Consensus       203 ~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~----~~~~~~~--~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~  276 (442)
T TIGR00800       203 STGAWAFLYALSLVIGSFATWATNAPDFTRFG----KSKKTAI--WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWS  276 (442)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHcCchhhhhhc----CCccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence            444566766666643222 2334678888887    5544433  445566666777777777776655    7765333


Q ss_pred             --hhhhCCCCchHHHH-----HHHHHHHHHHH-HHhHhhhHHHHHHHHHHHhh
Q 024723          114 --NILLSLEKPTWLIV-----MANFFVVVHVI-GSYQIYAMPVFDMIETLLVK  158 (263)
Q Consensus       114 --~il~nl~~~~~~~~-----~~~~~~~i~~~-~s~pl~~~p~~~~~~~~~~~  158 (263)
                        +....+........     ...++..+..+ ..--.+.++....+.+.+.+
T Consensus       277 p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l~l~~l~~~  329 (442)
T TIGR00800       277 PLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSAGLDIAALLPK  329 (442)
T ss_pred             HHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhCcC
Confidence              33333332111110     11122222222 34555567777777776643

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=91.65  E-value=3.7  Score=36.25  Aligned_cols=116  Identities=13%  Similarity=0.233  Sum_probs=80.2

Q ss_pred             CCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchh----
Q 024723           38 AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED----  113 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~----  113 (263)
                      -+.++.++..+.....+.|.+-....-+...+    +||++.+  |....+.....++|...-...-..||.+..+    
T Consensus       170 ~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~~~--k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~  243 (320)
T PF03845_consen  170 LESGIKPILKGSLVISFPFGGIEILLFLFPFV----KDKKKLK--KSLLIAILISGLFLLFIIFITIGVFGPELAKKLTY  243 (320)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceec
Confidence            35667788888888888898887777788888    7776654  8888888888888888877777888854322    


Q ss_pred             h---hhhCCCCchH---HHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhh
Q 024723          114 N---ILLSLEKPTW---LIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK  159 (263)
Q Consensus       114 ~---il~nl~~~~~---~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~  159 (263)
                      +   ..+..+-++.   ...+....-....+...-+..+...+.+.+.++.+
T Consensus       244 P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~  295 (320)
T PF03845_consen  244 PVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLK  295 (320)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            1   1122221211   22334444566777777788888889999888654

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PRK10484 putative transporter; Provisional

Probab=90.47  E-value=16  Score=34.71  Aligned_cols=34  Identities=18%  Similarity=0.458  Sum_probs=18.3

Q ss_pred             CCCCCCCCcchhhhHHHHHHHH---HHhhhhhhhhhccc
Q 024723           74 EKPSKGPMWRGVVVAYIVVALC---YFPVALIGYWMFGN  109 (263)
Q Consensus        74 ~~p~~~~~~~~~~~s~~~~~i~---Y~~~g~~gy~~fG~  109 (263)
                      ||+++-+  |...++.....+.   ....|..++..|++
T Consensus       271 k~~k~a~--~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~  307 (523)
T PRK10484        271 KNLAEGQ--KGALLAAFFKLLGPLILVLPGIIAFHLYGD  307 (523)
T ss_pred             CCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5544333  6655554333323   33557777877766

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=89.82  E-value=19  Score=34.37  Aligned_cols=176  Identities=16%  Similarity=0.188  Sum_probs=103.1

Q ss_pred             CCCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhh-hhhhh-hccc-----
Q 024723           37 TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVA-LIGYW-MFGN-----  109 (263)
Q Consensus        37 ~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g-~~gy~-~fG~-----  109 (263)
                      ..+..+.++...+-+..|+|.|...+----.|-    +||+|. ..++++-.+-=..++|++.- +.|.. .|.|     
T Consensus       228 ~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs----~nP~K~-iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~  302 (541)
T COG0833         228 AFAGGFKGFCSVFVIAAFSFSGTELVGLAAGES----ENPRKS-IPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLG  302 (541)
T ss_pred             CCCcchHHHHHHHhhheeeeeceeeeeeeeccc----CCchhh-hHHHHHHHHHHHHHHHHHHHHHheEEccCCCccccc
Confidence            346678899999999999999988776666666    899664 55777766666666776443 22332 3333     


Q ss_pred             -----cchhhhhhCCCC--chHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc-------cCCccchhHHHHHHH
Q 024723          110 -----KVEDNILLSLEK--PTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-------NFSPTRLLRFVVRNL  175 (263)
Q Consensus       110 -----~~~~~il~nl~~--~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~r~~  175 (263)
                           ..++|....+++  -.....+.|...+.+++.+--=.++...+.+..+-..+.       .+++..+..-+.-+.
T Consensus       303 ~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~  382 (541)
T COG0833         303 NSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTL  382 (541)
T ss_pred             CCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHH
Confidence                 111232222221  123456778888888887777777888888877654321       012233333333333


Q ss_pred             HHHHHHHHHhhcCC---hhHHHHhhhhhhhhhHHHhHhHHHHHHHhC
Q 024723          176 YVASTMFIGITFPF---FGGLLGFFGGFAFAPTTYFLPCIIWLAIYK  219 (263)
Q Consensus       176 ~v~~~~~vA~~ip~---~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~  219 (263)
                      ...+..+++...+.   ++-++++.|-.  .+++.+-=++.|++.||
T Consensus       383 ~fg~lafl~~~~~~~~vf~wL~~isg~s--~~i~W~~I~~shirFR~  427 (541)
T COG0833         383 LFGLLAFLNSSFKETTVFNWLLNISGLS--GFIAWGSICLSHIRFRR  427 (541)
T ss_pred             HHHHHHHHHhccCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            33333334333332   45566666532  35666777788887753

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=89.54  E-value=18  Score=33.76  Aligned_cols=165  Identities=13%  Similarity=0.153  Sum_probs=94.1

Q ss_pred             CCCcHHHHHHHHHHHHHHhcCc-cchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccc-hhhh
Q 024723           38 AAGTVFNFFSALGDVAFAYAGH-NVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV-EDNI  115 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~faf~~~-~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~-~~~i  115 (263)
                      .+.++.++..+++...=.+..- +......+-+    |+|+.++.-.....+......+-.+.|...-.+-|+.. ..+.
T Consensus       188 ~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~----~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~  263 (442)
T COG1457         188 GPTSPLSFLSALSLVIGSFASWGPYAADYSRYA----PSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADV  263 (442)
T ss_pred             CCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence            4667777777776655444333 3456666666    33332121123335556667777888888888888766 3333


Q ss_pred             hhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHh----hcCChh
Q 024723          116 LLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGI----TFPFFG  191 (263)
Q Consensus       116 l~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~----~ip~~~  191 (263)
                      ...+..   +...+.+...+....+--.++++..-.+.+...+-     ++..+.++..+.  ...++|.    +..+++
T Consensus       264 ~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l-----~k~~~~v~~~v~--igt~la~~~~~f~~~f~  333 (442)
T COG1457         264 MLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIPKL-----SKVTRVVIAGVG--IGTLLALAGPFFYNFFE  333 (442)
T ss_pred             HHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            333332   55667777788888888888888888877776532     122333332221  2223333    355677


Q ss_pred             HHHHhhhhhhhhhHHHhHhHHHHHH
Q 024723          192 GLLGFFGGFAFAPTTYFLPCIIWLA  216 (263)
Q Consensus       192 ~v~~lvGs~~~~~l~~i~P~l~~l~  216 (263)
                      .++.++|+.........+=-.+-.|
T Consensus       334 ~Fl~~i~~~i~P~~~I~iad~~~~r  358 (442)
T COG1457         334 NFLLLLGYFIPPWGGVMIADYFIVR  358 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777777666554444444433333

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

Probab=89.41  E-value=13  Score=34.32  Aligned_cols=56  Identities=20%  Similarity=0.102  Sum_probs=44.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCC
Q 024723          165 TRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP  220 (263)
Q Consensus       165 ~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~  220 (263)
                      .+.+|...|......+..+.+.+-+.+.++.+.+.+.+..+-+..+++..+..+++
T Consensus       323 ~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~  378 (416)
T COG1914         323 LWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK  378 (416)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence            45677888877777766666666699999999999999888888888888777664

>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]

Probab=87.35  E-value=26  Score=33.05  Aligned_cols=143  Identities=14%  Similarity=0.091  Sum_probs=68.6

Q ss_pred             cchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHH----HHhhhhhhhhhccccchh--hhhhCCCCchHHHHHHHHHH
Q 024723           60 NVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALC----YFPVALIGYWMFGNKVED--NILLSLEKPTWLIVMANFFV  133 (263)
Q Consensus        60 ~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~----Y~~~g~~gy~~fG~~~~~--~il~nl~~~~~~~~~~~~~~  133 (263)
                      -|.|..-+.-    |+|+.-.  +.=.++..+.+.+    =...+...+..||+...+  +++.+++++.....++.+.+
T Consensus       258 lN~~DFsRfa----~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~  331 (497)
T COG1953         258 LNIPDFTRFA----KSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTF  331 (497)
T ss_pred             cCCchhhccc----CChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHH
Confidence            3677777765    4443322  1112334444444    444445668899998554  78888885433221233333


Q ss_pred             HHHHHH-HhHhhhHHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHh
Q 024723          134 VVHVIG-SYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLP  210 (263)
Q Consensus       134 ~i~~~~-s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P  210 (263)
                      ++..+. ...-+..+....+.+++.+..+.+  +-..+...+.+.++.+-+=..-.++..+++..|++.+.....++=
T Consensus       332 ~iati~~Ni~aN~vsp~~D~s~l~Pk~in~k--rg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmia  407 (497)
T COG1953         332 AVATISTNIAANIVSPGYDLSALFPKYINIK--RGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIA  407 (497)
T ss_pred             HHHHHhhhHHhccCChHHHHHHhcccccchh--hhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            332222 222333445555555554432211  111122223333333433333345667777777777765555443

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses

Probab=82.21  E-value=47  Score=31.61  Aligned_cols=129  Identities=9%  Similarity=0.123  Sum_probs=61.3

Q ss_pred             ccCCCCcccccccCCC-CCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHH----
Q 024723           23 KGVQPDVAYGYKAKTA-AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYF----   97 (263)
Q Consensus        23 ~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~----   97 (263)
                      +|..++..+-.+.+.. -.+..-...|++-..|+.+.-.-..-.+.+-     +|++.+..+...+.......+-+    
T Consensus       228 ~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~Sy-----~~~~~n~~~~a~~v~~~~~~~sllag~  302 (523)
T PF00209_consen  228 PGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYGSY-----NKFKNNIFRDALIVAFINTLVSLLAGL  302 (523)
T ss_dssp             EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHHTT-----S-TTS-SHHHHHHHHHHHHHHHHTTGT
T ss_pred             CCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEEEEcCc-----CCCCccccccceEEEcCchhhhHhHHH
Confidence            3545555543332322 2334455789999999998665555566664     23333332333322222222222    


Q ss_pred             -hhhhhhhhhccc--c--------------chhhhhhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHH
Q 024723           98 -PVALIGYWMFGN--K--------------VEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLL  156 (263)
Q Consensus        98 -~~g~~gy~~fG~--~--------------~~~~il~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~  156 (263)
                       ++++.|+.+...  +              +-+.++.++|.++....+-..++.+..+.|.-....+....+++.+
T Consensus       303 ~if~~~g~~a~~~~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~~  378 (523)
T PF00209_consen  303 VIFSVLGFLANELGVPISDVPESGPGLAFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQISMLEVIVSALMDEF  378 (523)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--H-CHHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHhHHhhcccCCCCChhHhhCcCCCchHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhcCCceeceeEeeeecC
Confidence             223444443311  1              1123556667655555444555555555555555555555555443

High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=81.86  E-value=50  Score=31.63  Aligned_cols=173  Identities=10%  Similarity=0.062  Sum_probs=88.0

Q ss_pred             cHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchhhhhhCCC
Q 024723           41 TVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLE  120 (263)
Q Consensus        41 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~il~nl~  120 (263)
                      .-..+..++-.-++.+.|-..-..+-.|-    +|+++. -.|....+..+..++=.++-+.-.+.-+++...-.-.+++
T Consensus       250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~----~nAsk~-aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g  324 (550)
T KOG1289|consen  250 NGWAFILGFFNPAWTMSGYDAAAHMAEET----KNASKA-APRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLG  324 (550)
T ss_pred             chHHHHHhhccceeEEeccCchHHHHHHh----cchhhh-ccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCC
Confidence            55566666777777777777888888888    888765 3477777777776666655555556666433222222222


Q ss_pred             C-----------chHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhcc----------CCccchhHHHHHHHHHHH
Q 024723          121 K-----------PTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLN----------FSPTRLLRFVVRNLYVAS  179 (263)
Q Consensus       121 ~-----------~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~----------~~~~~~~~~~~r~~~v~~  179 (263)
                      +           +... .....+..+..++.---......+.....- ++..          +++......++....+..
T Consensus       325 ~p~~~i~~~~lg~k~~-v~~~~l~ii~~f~~gi~s~~a~SR~v~afa-RDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s  402 (550)
T KOG1289|consen  325 QPIVQIYYQALGKKGA-VFLLSLIIIALFFMGISSLTASSRLVYAFA-RDGGLPFSKYLAKVNPQTKVPLNAVLLSCIIS  402 (550)
T ss_pred             ChHHHHHHHhcCCCce-EehhHHHHHHHHHhhHHHHHHHHHHHhhhh-ccCCCCCcceeeecCCCCCCcHHHHHHHHHHH
Confidence            1           1111 112222222222222222222222222221 1110          011112223333333444


Q ss_pred             HHHHHhhcCChhHHHHhh-hhhhhhhHHHhHhHHHHHHHhCC
Q 024723          180 TMFIGITFPFFGGLLGFF-GGFAFAPTTYFLPCIIWLAIYKP  220 (263)
Q Consensus       180 ~~~vA~~ip~~~~v~~lv-Gs~~~~~l~~i~P~l~~l~~~~~  220 (263)
                      ..+.-+..++-..+-++. .+.....++|..|..+-+...|+
T Consensus       403 ~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~  444 (550)
T KOG1289|consen  403 ILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFFGRD  444 (550)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeeccc
Confidence            444445566655555554 34556679999999998777664

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=80.48  E-value=52  Score=30.98  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=13.4

Q ss_pred             chhhhHHHHH---HHHHHhhhhhhhhhccc
Q 024723           83 RGVVVAYIVV---ALCYFPVALIGYWMFGN  109 (263)
Q Consensus        83 ~~~~~s~~~~---~i~Y~~~g~~gy~~fG~  109 (263)
                      |...++....   .....++|+.|...+.+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~  294 (487)
T TIGR02121       265 KARRIGMSWMILSLLGAIAVGLTGIAYFNK  294 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5555443322   23345566666665543

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.43
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.14
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	97.97
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	82.93

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.43  E-value=5.8e-06  Score=74.88  Aligned_cols=174  Identities=12%  Similarity=0.089  Sum_probs=99.4

Q ss_pred             cHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccch----hhh-
Q 024723           41 TVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE----DNI-  115 (263)
Q Consensus        41 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~----~~i-  115 (263)
                      ++.++..++....|+|.|.........|+    |||+|. ..|+...+...+.++|.+.........+.+..    ++. 
T Consensus       189 ~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r~-ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~  263 (445)
T 3l1l_A          189 TFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKRN-VPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFG  263 (445)
T ss_dssp             ----HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHH
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCcccc-ccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHH
Confidence            46789999999999999999999999999    899543 45899999999999999988776666553221    111 


Q ss_pred             --hhCCCCchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc-----c--CCccchhHHHHHHHHHHHHHHHHhh
Q 024723          116 --LLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-----N--FSPTRLLRFVVRNLYVASTMFIGIT  186 (263)
Q Consensus       116 --l~nl~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-----~--~~~~~~~~~~~r~~~v~~~~~vA~~  186 (263)
                        .++.. +++...+..+...+..+.+.--......+.+...-+.+.     .  ++++.+.+-.+-...+.....+...
T Consensus       264 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~  342 (445)
T 3l1l_A          264 DAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSI  342 (445)
T ss_dssp             HHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence              11111 123344555555555555555555555555544332210     0  0112222222211111111111111


Q ss_pred             cC----ChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCC
Q 024723          187 FP----FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRK  222 (263)
Q Consensus       187 ip----~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~  222 (263)
                      .|    .++.+.++.+  .+..+.|.++.+.+++.+++++
T Consensus       343 ~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          343 SPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             SHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             cccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence            22    3555555554  3456899999999999887654

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.14  E-value=0.0002  Score=65.95  Aligned_cols=104  Identities=6%  Similarity=0.071  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccchh----------h
Q 024723           45 FFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED----------N  114 (263)
Q Consensus        45 ~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~----------~  114 (263)
                      ...++....|+|.|.......-.|+    |||+|. ..|++..+..++.++|.+..+.-....+++...          .
T Consensus       203 ~~~~~~~~~~a~~G~e~~~~~a~E~----k~P~k~-ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (511)
T 4djk_A          203 TLVVFVAFILSYMGVEASATHVNEM----SNPGRD-YPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTV  277 (511)
T ss_dssp             TTTTHHHHHHHHTTGGGGTGGGSSS----SCCTTT-HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhc----cCcccc-hhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHH
Confidence            4456788899999999999999999    899653 559999999999999999887766666543211          1


Q ss_pred             hhhCCC-CchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHH
Q 024723          115 ILLSLE-KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE  153 (263)
Q Consensus       115 il~nl~-~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~  153 (263)
                      +..+.. ...+...+..+...+..+.+.--......+.+.
T Consensus       278 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~  317 (511)
T 4djk_A          278 LMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMY  317 (511)
T ss_dssp             HHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTC
T ss_pred             HHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122222 023455556666666665554444444333333

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=97.97  E-value=0.00016  Score=65.41  Aligned_cols=174  Identities=11%  Similarity=0.090  Sum_probs=97.2

Q ss_pred             CCCcHHHHHHHHHHHHHHhcCccchhhhhhcCCCCCCCCCCCCCcchhhhHHHHHHHHHHhhhhhhhhhccccch-----
Q 024723           38 AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE-----  112 (263)
Q Consensus        38 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~-----  112 (263)
                      .+..+.+++.+++...|+|.|.........|+    |||+| +..|++..+..++.++|.+.........+.+.-     
T Consensus       183 ~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~----k~P~r-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~  257 (444)
T 3gia_A          183 APSAVSGMIFASAIFFLSYMGFGVITNASEHI----ENPKK-NVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASE  257 (444)
T ss_dssp             SHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB----SSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGG
T ss_pred             CCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc----cCccc-chhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccc
Confidence            34456788999999999999999999999999    89965 344899999999999999887765554442210     


Q ss_pred             hhhhhCCC--CchHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhhc-----cC-CccchhHHHHHHHHHHHHHHHH
Q 024723          113 DNILLSLE--KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-----NF-SPTRLLRFVVRNLYVASTMFIG  184 (263)
Q Consensus       113 ~~il~nl~--~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-----~~-~~~~~~~~~~r~~~v~~~~~vA  184 (263)
                      .+..+...  .+++...+..+...+..+.+.--......+.+...-+.+.     .+ +++...+-.+-.  ...+.+++
T Consensus       258 ~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~~~P~~a~~~~--~~~~~~~~  335 (444)
T 3gia_A          258 NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYIT--SALGVLFA  335 (444)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSCCSCTHHHHHH--HHHHHHHH
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCCCCCcHHHHHH--HHHHHHHH
Confidence            01110000  0122233344444444444443333333333333322110     00 111111111111  11122222


Q ss_pred             hhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCC
Q 024723          185 ITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR  221 (263)
Q Consensus       185 ~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~  221 (263)
                       .+.+++.+.++.+  .+..+.|.++.+.+++.++++
T Consensus       336 -~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~r~~~  369 (444)
T 3gia_A          336 -LLFNMEGVASITS--AVFMVIYLFVILSHYILIDEV  369 (444)
T ss_dssp             -HHSCHHHHHHHHH--HHHHHHHHHHHHHHHHTHHHH
T ss_pred             -HHcCHHHHHHHHH--HHHHHHHHHHHHHHHHhhhcC
Confidence             2346777777754  345788999998888887654

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=82.93  E-value=6.5  Score=36.14  Aligned_cols=46  Identities=11%  Similarity=0.135  Sum_probs=20.5

Q ss_pred             HHHHHHHhhcCChhHHHHhhhhhhhhhHHHhHhHHHHHHHhCCCCCc
Q 024723          178 ASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYS  224 (263)
Q Consensus       178 ~~~~~vA~~ip~~~~v~~lvGs~~~~~l~~i~P~l~~l~~~~~~~~~  224 (263)
                      +.+.++|...++++..++++-+..+....-++|.+ -+.++++|.++
T Consensus       379 i~a~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~-llgl~wkr~~~  424 (530)
T 3dh4_A          379 IIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVF-LLGLFWKKTTS  424 (530)
T ss_dssp             HHHHHHGGGGGGCSCHHHHHHHHHTTTHHHHHHHH-HHHHHCTTCCH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHH-HHHHHhCCCCH
Confidence            33444554444555555554433332222233332 34556665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00