Citrus Sinensis ID: 024830

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MDALTIKPTSNSLRFGKTKPLPPTRLSFFKFTHFNKLRASSVIAFCVKGTPSNPQNRQPEYNNNNDTDNHNHKRNFPVNPFCVLFPILQSIKGLASSQTKKWASRLQAHSSQLENINVIDQNSNDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTNIVARAVAMPSS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccHHcccHHHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccEcccHHHHcccccccccccEEEEEEEccccccccccEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHcccHHHHccHHHHccHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mdaltikptsnslrfgktkplpptrlsffkfthfnklrASSVIAFCvkgtpsnpqnrqpeynnnndtdnhnhkrnfpvnpfcvLFPILQSIKGLASSQTKKWASRLQAHSsqleninvidqnsndylqtgAFGAALLSVTStakvkispfvatlaanptfVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFasggmpsshsALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIgvrrhagmqaEVTNIVARAVAMPSS
Flexible Loop (DISEMBL)
mdaltikptsnslrfgktkplppTRLSFFKFTHFNKLRASSVIAFCVKGTpsnpqnrqpeynNNNDTDNHNHKRNFPVNPFCVLFPILQSIKGLASSQTKKWASRLQAHSSQLENINVIDQNSNDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTNIVARAVAMPSS
Low Complexity Region (SEG)
MDALTIKPTSNSLRFGKTKPLPPTRLSFFKFTHFNKLRASSVIAFCVKGTPSNPQNRQPEYnnnndtdnhnhKRNFPVNPFCVLFPILQSIKGLASSQTKKWASRLQAHSSQLENINVIDQNSNDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTNIVARAVAMPSS
Disordered region (IsUnstruct)
***********************TRLSFFKFTHFNKLRASSVIAFCVK**************************NFPVNPFCVLFPILQSIKGLASS***KWA*********LENINVIDQNSNDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTNIVARA******
Disordered Region (DISOPRED)
********TSNSLRFGKTKPLPPTRLSFFKFTHFNKLRASSVIAF************************HNHKRNFPVNPFCVLFPILQSIKGLASSQTKKWASRLQAHSS*LEN*NVIDQNSNDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTNIVARAVA****
Disordered Region (DISEMBL)
MDALTIKPTSNSLRFGKTKPLPPTRLSFFKFTHFNKLRASSVIAFCVKGTPSNPQNRQPEYNNNNDTDNHNHKRNFPVNPFCVLFPILQSIK****************HSSQLENINVIDQNSNDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTNIVARAVAMPSS
Disordered Region (DISPRO)
**ALTIKPTSNSLRFGKTKPLPPTRLSFFKFTHFNKLRASSVIAFCVKGTPSNPQNRQP***NNND***HNHKRNFPVNPFCVLFPILQSIKGLASSQTKKWASRLQAHSSQLENINVIDQNSNDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTNIVARAVA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDALTIKPTSNSLRFGKTKPLPPTRLSFFKFTHFNKLRASSVIAFCVKGTPSNPQNRQPEYNNNNDTDNHNHKRNFPVNPFCVLFPILQSIKGLASSQTKKWASRLQAHSSQLENINVIDQNSNDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTNIVARAVAMPSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
O32107	158	Uncharacterized membrane	yes	no	0.374	0.620	0.540	4e-19

>sp|O32107|YUID_BACSU Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain 168) GN=yuiD PE=4 SV=1

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 64/98 (65%)

Query: 154 LAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVAL 213
           L  N   +S L A + AQ  KV + F V RK D  L+ ++GGMPSSHSA  TAL+T VAL
Sbjct: 3   LLTNFPLLSSLAAIIFAQVIKVPIQFIVSRKLDWSLVTSTGGMPSSHSAAVTALSTGVAL 62

Query: 214 CHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTN 251
            HG+  SLF V   F++I M+DA GVRRHAG QA V N
Sbjct: 63  EHGLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVIN 100

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
255564703	288	conserved hypothetical protein [Ricinus	0.923	0.840	0.640	2e-82
297817510	285	hypothetical protein ARALYDRAFT_907735 [	0.904	0.831	0.579	5e-74
18412127	284	Acid phosphatase/vanadium-dependent halo	0.900	0.830	0.571	3e-72
449432050	284	PREDICTED: uncharacterized protein LOC10	0.706	0.651	0.640	1e-64
449477929	284	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.706	0.651	0.635	4e-64
225470904	252	PREDICTED: uncharacterized membrane prot	0.656	0.682	0.596	5e-60
224064252	175	predicted protein [Populus trichocarpa]	0.480	0.72	0.904	5e-60
147805384	185	hypothetical protein VITISV_024312 [Viti	0.503	0.713	0.803	2e-57
356573233	214	PREDICTED: uncharacterized membrane prot	0.473	0.579	0.862	7e-57
6850868	197	putative protein [Arabidopsis thaliana]	0.519	0.690	0.757	4e-55

>gi|255564703|ref|XP_002523346.1| conserved hypothetical protein [Ricinus communis] gi|223537434|gb|EEF39062.1| conserved hypothetical protein [Ricinus communis]

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 166/259 (64%), Positives = 186/259 (71%), Gaps = 17/259 (6%)

Query: 1   MDALTIKPTSNSLRFGKTKPLPP----TRLSFFKFTHFNKLRASSVIAFCVKGTPSNPQN 56
           MD+LT+KPT N   F  T  +        LSFFK T   K R +S I F  +  PSN QN
Sbjct: 1   MDSLTLKPTLNFFYFNPTTTIKSLYSHKHLSFFKLTPSTKFRTASPICFSGR-NPSNAQN 59

Query: 57  RQPEYNNNNDTDNHNHKRNFPVNPFCVLFPILQSIKGLASSQTKKWASRLQAHSSQLENI 116
             P     ND         F  NP  VL P+LQ +K +A SQTK+W SRLQA+S + E  
Sbjct: 60  --PRLTRKNDA--------FSFNPLWVLVPVLQRVKFIAFSQTKRWVSRLQAYSEESEK- 108

Query: 117 NVIDQNSNDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVF 176
             ++    +YLQ GAFG ALLS+TS AKVKISPFV+TLAANPTF+SGL AW +AQSTKV 
Sbjct: 109 -AMNDYDGNYLQNGAFGVALLSITSNAKVKISPFVSTLAANPTFISGLLAWFVAQSTKVI 167

Query: 177 LNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDA 236
           LNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDA
Sbjct: 168 LNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDA 227

Query: 237 IGVRRHAGMQAEVTNIVAR 255
           IGVRRHAGMQAEV N++  
Sbjct: 228 IGVRRHAGMQAEVLNMIVE 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817510|ref|XP_002876638.1| hypothetical protein ARALYDRAFT_907735 [Arabidopsis lyrata subsp. lyrata] gi|297322476|gb|EFH52897.1| hypothetical protein ARALYDRAFT_907735 [Arabidopsis lyrata subsp. lyrata]

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 149/257 (57%), Positives = 181/257 (70%), Gaps = 20/257 (7%)

Query: 1   MDALTIKPTSNSLRFGKTKPLPPTRLSFFKFTHFNKLRAS--SVIAFCVKGTPSNPQNRQ 58
           M++LT  P+     F KT    P+RLSF K T   KL  S  ++  FC K + SNP+   
Sbjct: 1   MESLTSNPSFAC--FSKTISHYPSRLSFVKLTSIQKLEPSNNTLSLFCCKSSSSNPK--- 55

Query: 59  PEYNNNNDTDNHNHKRNFPVNPFCVLFPILQSIKGLASSQTKKWASRLQAHSSQLENINV 118
           P+ N           R   +NPFCVL PI+++IKGL SSQ++ W SRL+A+       + 
Sbjct: 56  PDCN-----------RRIKLNPFCVLRPIIRTIKGLVSSQSRLWMSRLRAYRDDTAAFS- 103

Query: 119 IDQNSNDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLN 178
            +  + D    G  G ALLSVT++AK+KISPFVATL+ANPTFVS + AW  AQS+K+ +N
Sbjct: 104 -EDFAGDLKHNGGLGIALLSVTASAKIKISPFVATLSANPTFVSAVVAWFFAQSSKMVIN 162

Query: 179 FFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIG 238
           FF+ERKWD RLL+ASGGMPSSHSALC ALTTSVALCHGVADSLFPVCLGFSLIVMYDAIG
Sbjct: 163 FFIERKWDFRLLYASGGMPSSHSALCMALTTSVALCHGVADSLFPVCLGFSLIVMYDAIG 222

Query: 239 VRRHAGMQAEVTNIVAR 255
           VRRHAGMQAEV N++ R
Sbjct: 223 VRRHAGMQAEVLNLIIR 239

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412127|ref|NP_567117.1| Acid phosphatase/vanadium-dependent haloperoxidase-related protein [Arabidopsis thaliana] gi|19347771|gb|AAL86337.1| unknown protein [Arabidopsis thaliana] gi|21555852|gb|AAM63948.1| unknown [Arabidopsis thaliana] gi|21689857|gb|AAM67572.1| unknown protein [Arabidopsis thaliana] gi|332646734|gb|AEE80255.1| Acid phosphatase/vanadium-dependent haloperoxidase-related protein [Arabidopsis thaliana]

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 147/257 (57%), Positives = 180/257 (70%), Gaps = 21/257 (8%)

Query: 1   MDALTIKPTSNSLRFGKTKPLPPTRLSFFKFTHFNKLRAS--SVIAFCVKGTPSNPQNRQ 58
           M++LT  P+     F KT    P+R SF K T   KL AS  ++  FC K + SNP+   
Sbjct: 1   MESLTSNPSFAC--FSKTISHYPSRFSFVKLTSIQKLEASNNTLSLFCCKSS-SNPK--- 54

Query: 59  PEYNNNNDTDNHNHKRNFPVNPFCVLFPILQSIKGLASSQTKKWASRLQAHSSQLENINV 118
           P+ N           R   +NP CVL PI+++IKGL SSQ+++W SR +A+       + 
Sbjct: 55  PDCN-----------RRIKLNPLCVLRPIIRTIKGLVSSQSRQWMSRFRAYRDDTAAFS- 102

Query: 119 IDQNSNDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLN 178
            +  + D    G  G ALLSVT++AK+KISPFVATL+ANPTFVS + AW  AQS+K+ +N
Sbjct: 103 -EDFAGDLKHNGGLGIALLSVTASAKIKISPFVATLSANPTFVSAVVAWFFAQSSKMVIN 161

Query: 179 FFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIG 238
           FF+ERKWD RLL+ASGGMPSSHSALC ALTTSVALCHGVADSLFPVCLGFSLIVMYDAIG
Sbjct: 162 FFIERKWDFRLLYASGGMPSSHSALCMALTTSVALCHGVADSLFPVCLGFSLIVMYDAIG 221

Query: 239 VRRHAGMQAEVTNIVAR 255
           VRRHAGMQAEV N++ R
Sbjct: 222 VRRHAGMQAEVLNLIIR 238

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432050|ref|XP_004133813.1| PREDICTED: uncharacterized protein LOC101209825 [Cucumis sativus]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 130/203 (64%), Positives = 151/203 (74%), Gaps = 18/203 (8%)

Query: 54  PQNRQPEYNNNNDTDNHNHKRNFPVNPFCVLFPILQSIKGLASSQTKKWASRLQAHSSQL 113
           P  R  +Y   +        R+F  N F VL P+LQSIKG+  S+T         H +Q 
Sbjct: 53  PTTRNQKYEGGD--------RSFSSNLFWVLVPVLQSIKGVILSKT---------HKAQS 95

Query: 114 ENINVIDQNSN-DYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQS 172
            +   ++   N +YLQ+G+ G ALLS+T+TAK +ISPFVATLA NPTFVSGLFAW  AQS
Sbjct: 96  VSEGFVNGGLNGNYLQSGSVGTALLSITATAKHRISPFVATLATNPTFVSGLFAWFFAQS 155

Query: 173 TKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIV 232
           TKV LNFFVERKWDL+++FA GGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIV
Sbjct: 156 TKVLLNFFVERKWDLKIMFACGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIV 215

Query: 233 MYDAIGVRRHAGMQAEVTNIVAR 255
           MYDAIGVRRHAGMQAEV N++  
Sbjct: 216 MYDAIGVRRHAGMQAEVLNLIVE 238

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477929|ref|XP_004155165.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101209825 [Cucumis sativus]

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 129/203 (63%), Positives = 150/203 (73%), Gaps = 18/203 (8%)

Query: 54  PQNRQPEYNNNNDTDNHNHKRNFPVNPFCVLFPILQSIKGLASSQTKKWASRLQAHSSQL 113
           P  R  +Y   +        R+F  N F VL P+LQSIKG+  S+T         H +Q 
Sbjct: 53  PTTRNQKYEGGD--------RSFSSNLFWVLVPVLQSIKGVILSKT---------HKAQS 95

Query: 114 ENINVIDQNSN-DYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQS 172
            +   ++   N +YLQ+G+ G ALLS+T+TAK +ISPFVATLA NPTFVSGLFAW  AQS
Sbjct: 96  VSEGFVNGGLNGNYLQSGSVGTALLSITATAKHRISPFVATLATNPTFVSGLFAWFFAQS 155

Query: 173 TKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIV 232
           TKV LNFFVERKWDL+++FA GGMPSSHSALCTALTTSVALCHGVADS FPVCLGFSLIV
Sbjct: 156 TKVLLNFFVERKWDLKIMFACGGMPSSHSALCTALTTSVALCHGVADSXFPVCLGFSLIV 215

Query: 233 MYDAIGVRRHAGMQAEVTNIVAR 255
           MYDAIGVRRHAGMQAEV N++  
Sbjct: 216 MYDAIGVRRHAGMQAEVLNLIVE 238

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470904|ref|XP_002263519.1| PREDICTED: uncharacterized membrane protein yuiD [Vitis vinifera] gi|297745470|emb|CBI40550.3| unnamed protein product [Vitis vinifera]

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 121/203 (59%), Positives = 144/203 (70%), Gaps = 31/203 (15%)

Query: 53  NPQNRQPEYNNNNDTDNHNHKRNFPVNPFCVLFPILQSIKGLASSQTKKWASRLQAHSSQ 112
           NP+N  P+ +NN+            +NPF V      +I+GLAS                
Sbjct: 35  NPKNPSPKRSNNSSV----------INPFVVF----HTIRGLAS---------------- 64

Query: 113 LENINVIDQNSNDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQS 172
                  ++ + +Y Q GAFG ALLS+T+ AKV+ SPF+ATLAAN TFVSG+FAW++AQS
Sbjct: 65  -RGFGFREEFNGEYYQNGAFGVALLSLTTNAKVRFSPFLATLAANSTFVSGVFAWVVAQS 123

Query: 173 TKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIV 232
            KV LNFFVERKWDLR++FASGGMPSSH+ALCTALTTSVALCHGVADSLFPVCLGFSLIV
Sbjct: 124 VKVVLNFFVERKWDLRIMFASGGMPSSHTALCTALTTSVALCHGVADSLFPVCLGFSLIV 183

Query: 233 MYDAIGVRRHAGMQAEVTNIVAR 255
           MYDA GVRRHAGMQAEV N++  
Sbjct: 184 MYDATGVRRHAGMQAEVLNMIVE 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064252|ref|XP_002301410.1| predicted protein [Populus trichocarpa] gi|222843136|gb|EEE80683.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 114/126 (90%), Positives = 118/126 (93%)

Query: 130 GAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRL 189
           GAFG ALLS+TS AKVKISPFVATLAANPTF+SGLFAW IAQS KVFLNFFVERKWDLRL
Sbjct: 4   GAFGLALLSITSHAKVKISPFVATLAANPTFISGLFAWFIAQSMKVFLNFFVERKWDLRL 63

Query: 190 LFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEV 249
           LFASGGMPSSHSALCTALTTSVA CHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEV
Sbjct: 64  LFASGGMPSSHSALCTALTTSVAFCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEV 123

Query: 250 TNIVAR 255
            N++  
Sbjct: 124 LNMIVE 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805384|emb|CAN71954.1| hypothetical protein VITISV_024312 [Vitis vinifera]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/132 (80%), Positives = 119/132 (90%)

Query: 124 NDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLNFFVER 183
            +Y Q GAFG ALLS+T+ AKV+ SPF+ATLAAN TFVSG+FAW++AQS KV LNFFVER
Sbjct: 8   GEYYQNGAFGVALLSLTTNAKVRFSPFLATLAANSTFVSGVFAWVVAQSVKVVLNFFVER 67

Query: 184 KWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHA 243
           KWDLR++FASGGMPSSH+ALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDA GVRRHA
Sbjct: 68  KWDLRIMFASGGMPSSHTALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDATGVRRHA 127

Query: 244 GMQAEVTNIVAR 255
           GMQAEV N++  
Sbjct: 128 GMQAEVLNMIVE 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573233|ref|XP_003554767.1| PREDICTED: uncharacterized membrane protein yuiD-like [Glycine max]

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 107/124 (86%), Positives = 117/124 (94%)

Query: 130 GAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRL 189
           G  G ALLSVT+ AK++ISPFVATLAANPTFVSGL AW+IAQS KVFLNFF+ERKWDLRL
Sbjct: 43  GGLGVALLSVTANAKLRISPFVATLAANPTFVSGLLAWLIAQSMKVFLNFFMERKWDLRL 102

Query: 190 LFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEV 249
           LFASGGMPSSHSALCTAL+TSVA+CHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQA+V
Sbjct: 103 LFASGGMPSSHSALCTALSTSVAICHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAQV 162

Query: 250 TNIV 253
            N++
Sbjct: 163 LNLI 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6850868|emb|CAB71107.1| putative protein [Arabidopsis thaliana]

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 103/136 (75%), Positives = 117/136 (86%)

Query: 120 DQNSNDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLNF 179
           +  + D    G  G ALLSVT++AK+KISPFVATL+ANPTFVS + AW  AQS+K+ +NF
Sbjct: 16  EDFAGDLKHNGGLGIALLSVTASAKIKISPFVATLSANPTFVSAVVAWFFAQSSKMVINF 75

Query: 180 FVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGV 239
           F+ERKWD RLL+ASGGMPSSHSALC ALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGV
Sbjct: 76  FIERKWDFRLLYASGGMPSSHSALCMALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGV 135

Query: 240 RRHAGMQAEVTNIVAR 255
           RRHAGMQAEV N++ R
Sbjct: 136 RRHAGMQAEVLNLIIR 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2076790	284	AT3G61770 "AT3G61770" [Arabido	0.858	0.792	0.574	5.2e-65
TAIR|locus:2008575	163	AT1G67600 "AT1G67600" [Arabido	0.416	0.668	0.491	3.5e-20
TAIR|locus:2089950	174	AT3G21610 "AT3G21610" [Arabido	0.354	0.534	0.457	9.5e-18
UNIPROTKB|Q71X40	157	LMOf2365_2359 "Putative unchar	0.377	0.630	0.444	2e-17
UNIPROTKB|Q81YD7	141	BAS3352 "Uncharacterized prote	0.377	0.702	0.414	2.3e-16
TIGR_CMR|BA_3613	141	BA_3613 "conserved hypothetica	0.377	0.702	0.414	2.3e-16
TAIR|locus:505006336	213	AT3G12685 "AT3G12685" [Arabido	0.404	0.497	0.351	6.4e-12

TAIR|locus:2076790 AT3G61770 "AT3G61770" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 139/242 (57%), Positives = 170/242 (70%)

Query:    15 FGKTKPLPPTRLSFFKFTHFNKLRASS-VIAFCVKGTPSNPQNRQPEYXXXXXXXXXXXK 73
             F KT    P+R SF K T   KL AS+  ++     + SNP+   P+             
Sbjct:    13 FSKTISHYPSRFSFVKLTSIQKLEASNNTLSLFCCKSSSNPK---PDC-----------N 58

Query:    74 RNFPVNPFCVLFPILQSIKGLASSQTKKWASRLQAHSSQLENINVIDQNSNDYLQTGAFG 133
             R   +NP CVL PI+++IKGL SSQ+++W SR +A+       +  +  + D    G  G
Sbjct:    59 RRIKLNPLCVLRPIIRTIKGLVSSQSRQWMSRFRAYRDDTAAFS--EDFAGDLKHNGGLG 116

Query:   134 AALLSVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFAS 193
              ALLSVT++AK+KISPFVATL+ANPTFVS + AW  AQS+K+ +NFF+ERKWD RLL+AS
Sbjct:   117 IALLSVTASAKIKISPFVATLSANPTFVSAVVAWFFAQSSKMVINFFIERKWDFRLLYAS 176

Query:   194 GGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTNIV 253
             GGMPSSHSALC ALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEV N++
Sbjct:   177 GGMPSSHSALCMALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVLNLI 236

Query:   254 AR 255
              R
Sbjct:   237 IR 238

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2008575 AT1G67600 "AT1G67600" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 56/114 (49%), Positives = 69/114 (60%)

Query:   138 SVTSTAKVKISPFVATLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMP 197
             SV S++   IS F      N   +S + A+ IAQ  K F +++ ER+WDL+ L  SGGMP
Sbjct:     4 SVASSSSHYISIFT-----NYPLISAVLAFTIAQFIKFFTSWYKERRWDLKRLVGSGGMP 58

Query:   198 SSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTN 251
             SSHSA  TAL  +V L  G   S F + L  + IVMYDA GVR HAG QAEV N
Sbjct:    59 SSHSATVTALALAVGLQEGFGGSHFAIALVLTTIVMYDATGVRLHAGRQAEVLN 112

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2089950 AT3G21610 "AT3G21610" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 43/94 (45%), Positives = 59/94 (62%)

Query:   158 PTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGV 217
             P F S   A+ +AQ  KVF N++ E++WD + + +SGGMPSSHSA  TAL  ++    G 
Sbjct:    35 PIF-SAFLAFALAQFLKVFTNWYKEKRWDSKRMISSGGMPSSHSATVTALAVAIGFEEGA 93

Query:   218 ADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTN 251
                 F + +  + +VMYDA GVR HAG QAE+ N
Sbjct:    94 GAPAFAIAVVLACVVMYDASGVRLHAGRQAELLN 127

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q71X40 LMOf2365_2359 "Putative uncharacterized protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 44/99 (44%), Positives = 66/99 (66%)

Query:   153 TLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVA 212
             ++  N   ++ + A + AQ  KV ++  V RK++L L+F++GGMPSSHSA  TAL T++A
Sbjct:     2 SIFTNTPLIASIIAIVFAQVVKVPIHILVYRKFNLGLMFSTGGMPSSHSAAVTALMTTLA 61

Query:   213 LCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTN 251
             + +G+    F + + F +IVM+DA GVRR AG QA V N
Sbjct:    62 IEYGLDSPYFAIAVVFGIIVMFDATGVRRQAGEQAVVLN 100

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81YD7 BAS3352 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 41/99 (41%), Positives = 58/99 (58%)

Query:   153 TLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVA 212
             T+  N   ++ + +W +AQ TKV        ++D    FASGGMPSSH++  TAL T V 
Sbjct:     3 TILHNDPLMAAVISWFLAQFTKVIFKLVKTGEFDFAKFFASGGMPSSHASTVTALATGVG 62

Query:   213 LCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTN 251
             +  GV  +LF +   F++IVMYDA GVR     QA++ N
Sbjct:    63 VVEGVESTLFAIAAIFAIIVMYDASGVRLAVSKQAKILN 101

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_3613 BA_3613 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 41/99 (41%), Positives = 58/99 (58%)

Query:   153 TLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVA 212
             T+  N   ++ + +W +AQ TKV        ++D    FASGGMPSSH++  TAL T V 
Sbjct:     3 TILHNDPLMAAVISWFLAQFTKVIFKLVKTGEFDFAKFFASGGMPSSHASTVTALATGVG 62

Query:   213 LCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTN 251
             +  GV  +LF +   F++IVMYDA GVR     QA++ N
Sbjct:    63 VVEGVESTLFAIAAIFAIIVMYDASGVRLAVSKQAKILN 101

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006336 AT3G12685 "AT3G12685" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 38/108 (35%), Positives = 62/108 (57%)

Query:   151 VATLAANPTFVSGLFAWMIAQSTKVFLNFFVERK-WDLRLLFASGGMPSSHSALCTALTT 209
             +A +  N   ++   + +I Q +K F +  +  K  D R +F +GG PS+HS+   A  T
Sbjct:    47 IAEVIHNKVLIAAGTSAVIGQLSKPFTSVVLYGKNLDFRSVFQAGGFPSTHSSSVVAAAT 106

Query:   210 SVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTN-IVARA 256
             ++A   G ADS+F + + ++ ++MYDA GVRR  G  A+V N + A A
Sbjct:   107 AIAFERGFADSIFGLTVVYAGLIMYDAQGVRREVGKHAKVLNKLTANA 154


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.132   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      262       251   0.00081  114 3  11 22  0.39    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  180 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.40u 0.16s 19.56t   Elapsed:  00:00:01
  Total cpu time:  19.40u 0.16s 19.56t   Elapsed:  00:00:01
  Start:  Sat May 11 03:11:03 2013   End:  Sat May 11 03:11:04 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
pfam02681	141	pfam02681, DUF212, Divergent PAP2 family	4e-51
COG1963	153	COG1963, COG1963, Uncharacterized protein conserve	1e-34

>gnl|CDD|145700 pfam02681, DUF212, Divergent PAP2 family

 Score =  163 bits (415), Expect = 4e-51
 Identities = 56/98 (57%), Positives = 66/98 (67%)

Query: 154 LAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVAL 213
           L +N   ++ L AW +AQ  KV +  F ER+WD R+LF +GGMPSSHSAL TAL T V L
Sbjct: 1   LLSNKVLLAALLAWFLAQFIKVIIELFKERRWDFRVLFETGGMPSSHSALVTALATGVGL 60

Query: 214 CHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTN 251
             G   SLF +   F+LIVMYDA GVRR AG QAEV N
Sbjct: 61  QEGFDSSLFAIAAVFALIVMYDAAGVRRAAGKQAEVLN 98

This family is related to the pfam01569 family (personal obs: C Yeats). Length = 141

>gnl|CDD|224874 COG1963, COG1963, Uncharacterized protein conserved in bacteria [Function unknown]

 Score =  121 bits (305), Expect = 1e-34
 Identities = 49/95 (51%), Positives = 64/95 (67%)

Query: 157 NPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHG 216
           N   +S L A ++AQ  KV +     RK ++ LLF++GGMPSSHSAL TAL TS+AL  G
Sbjct: 10  NTPLLSALVAILLAQVIKVLIELIRTRKLNVTLLFSTGGMPSSHSALVTALATSIALTEG 69

Query: 217 VADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVTN 251
           +   LF +   F++IVMYDA GVRR AG+QA + N
Sbjct: 70  LDSPLFAIAAVFAIIVMYDATGVRRSAGVQARILN 104

Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
PF02681	141	DUF212: Divergent PAP2 family; InterPro: IPR003832	100.0
COG1963	153	Uncharacterized protein conserved in bacteria [Fun	100.0
cd03394	106	PAP2_like_5 PAP2_like_5 proteins. PAP2 is a super-	97.07
cd03383	109	PAP2_diacylglycerolkinase PAP2_like proteins, diac	97.06
PF01569	129	PAP2: PAP2 superfamily This family includes the fo	95.8
cd03391	159	PAP2_containing_2_like PAP2, subfamily similar to	95.7
cd03382	159	PAP2_dolichyldiphosphatase PAP2_like proteins, dol	95.59
cd03388	151	PAP2_SPPase1 PAP2_like proteins, sphingosine-1-pho	95.51
cd03392	182	PAP2_like_2 PAP2_like_2 proteins. PAP2 is a super-	95.5
cd01610	122	PAP2_like PAP2_like proteins, a super-family of hi	95.46
cd03393	125	PAP2_like_3 PAP2_like_3 proteins. PAP2 is a super-	95.4
PRK09597	190	lipid A 1-phosphatase; Reviewed	95.18
cd03385	144	PAP2_BcrC_like PAP2_like proteins, BcrC_like subfa	94.31
cd03395	177	PAP2_like_4 PAP2_like_4 proteins. PAP2 is a super-	94.04
PLN02525	352	phosphatidic acid phosphatase family protein	93.77
cd03389	186	PAP2_lipid_A_1_phosphatase PAP2_like proteins, Lip	93.22
cd03384	150	PAP2_wunen PAP2, wunen subfamily. Most likely a fa	91.82
COG0671	232	PgpB Membrane-associated phospholipid phosphatase	91.77
PRK11837	202	undecaprenyl pyrophosphate phosphatase; Provisiona	91.47
KOG3146	228	consensus Dolichyl pyrophosphate phosphatase and r	89.73
smart00014	116	acidPPc Acid phosphatase homologues.	89.55
cd03390	193	PAP2_containing_1_like PAP2, subfamily similar to	89.52
PRK10699	244	phosphatidylglycerophosphatase B; Provisional	89.51
cd03381	235	PAP2_glucose_6_phosphatase PAP2_like proteins, glu	88.7
cd03396	197	PAP2_like_6 PAP2_like_6 proteins. PAP2 is a super-	86.29
PLN02731	333	Putative lipid phosphate phosphatase	82.06

>PF02681 DUF212: Divergent PAP2 family; InterPro: IPR003832 This family is related to the acid phosphatase/vanadium-dependent haloperoxidases; members of this group are uncharacterised

Probab=100.00  E-value=1.1e-50  Score=338.48  Aligned_cols=106  Identities=51%  Similarity=0.836  Sum_probs=103.9

Q ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhcCCCCchhHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhh
Q 024830          154 LAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVM  233 (262)
Q Consensus       154 Ll~N~vLiaAliAw~vAQ~iKvii~~l~~rk~D~~~lf~SGGMPSSHSA~VsALATaIGl~eGf~SplFAIA~VfAlIVM  233 (262)
                      |++|++|++|++||++||++|++++++++|+|||+++|+||||||||||+|+||||++|+++||+||+||+|++||+|||
T Consensus         1 l~~N~~l~~a~~a~~~AQ~iK~~~~~~~~r~~d~~~~~~sGGMPSSHSA~V~aLat~ig~~~G~~S~~FAia~v~a~IVm   80 (141)
T PF02681_consen    1 LLSNKVLIAALIAWFIAQFIKVFINYLKERKWDWRRFFSSGGMPSSHSATVSALATAIGLQEGFDSPLFAIAAVFALIVM   80 (141)
T ss_pred             CcCChHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHhhcCCCCchHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhhe
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhhhhhhhhHHHHHHHHHhcC
Q 024830          234 YDAIGVRRHAGMQAEVTNIVARAVAM  259 (262)
Q Consensus       234 YDA~GVRRaaGkQA~vLN~Lieel~~  259 (262)
                      |||+||||++||||++||+|++++++
T Consensus        81 yDA~GVRr~aG~qA~~lN~l~~~~~~  106 (141)
T PF02681_consen   81 YDAMGVRRAAGKQAKVLNQLIEELEE  106 (141)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999853

>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=1.9e-46  Score=317.06  Aligned_cols=109  Identities=45%  Similarity=0.703  Sum_probs=107.0

Q ss_pred             HHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhcCCCCchhHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 024830          150 FVATLAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFS  229 (262)
Q Consensus       150 ~l~~Ll~N~vLiaAliAw~vAQ~iKvii~~l~~rk~D~~~lf~SGGMPSSHSA~VsALATaIGl~eGf~SplFAIA~VfA  229 (262)
                      .+.++|+|.+|++|++||+.||++|++|+++++||+||+.+++||||||||||+|+||+|++|+++||+||+||||++||
T Consensus         3 ~~~~if~n~~llsal~a~~~AQvIKv~I~~~~~rk~~~~~~~sTGGMPSsHSA~VtALat~ial~~G~dS~lFaiA~vfa   82 (153)
T COG1963           3 DLMEIFTNTPLLSALVAILLAQVIKVLIELIRTRKLNVTLLFSTGGMPSSHSALVTALATSIALTEGLDSPLFAIAAVFA   82 (153)
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeecCCCCchHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccchhhhhhhhhhHHHHHHHHHhc
Q 024830          230 LIVMYDAIGVRRHAGMQAEVTNIVARAVA  258 (262)
Q Consensus       230 lIVMYDA~GVRRaaGkQA~vLN~Lieel~  258 (262)
                      +||||||.||||++|+||++||+|++|+.
T Consensus        83 iIvm~DA~GVRr~aG~QA~iLN~l~~~~~  111 (153)
T COG1963          83 IIVMYDATGVRRSAGVQARILNQLIEELV  111 (153)
T ss_pred             HHHhhhhhhHHHhccchHHHHHHHHHHHH
Confidence            99999999999999999999999999984

>cd03394 PAP2_like_5 PAP2_like_5 proteins

Probab=97.07  E-value=0.0039  Score=48.07  Aligned_cols=54  Identities=17%  Similarity=0.062  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhcCCCCchhHHHHHHHHHHHHHHhcC
Q 024830          160 FVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGV  217 (262)
Q Consensus       160 LiaAliAw~vAQ~iKvii~~l~~rk~D~~~lf~SGGMPSSHSA~VsALATaIGl~eGf  217 (262)
                      +.+.+++.++.+++|.+++  +.|..+.  .-...+|||.|++...++++.++...+.
T Consensus         9 ~~~~~~~~~~~~~lK~~~~--r~RP~~~--~~~~~sfPSgHa~~a~~~~~~~~~~~~~   62 (106)
T cd03394           9 AEAAALTAAVTEGLKFAVG--RARPDGS--NNGYRSFPSGHTASAFAAATFLQYRYGW   62 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHC--CCCCCCC--CCCCCccCcHHHHHHHHHHHHHHHHHcc
Confidence            4455666677777777654  2222221  1567799999999999999999887765

PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.

>cd03383 PAP2_diacylglycerolkinase PAP2_like proteins, diacylglycerol_kinase like sub-family

Probab=97.06  E-value=0.0025  Score=51.11  Aligned_cols=71  Identities=23%  Similarity=0.408  Sum_probs=44.9

Q ss_pred             HhcChh---HHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhcCCCCchhHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 024830          154 LAANPT---FVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSL  230 (262)
Q Consensus       154 Ll~N~v---LiaAliAw~vAQ~iKvii~~l~~rk~D~~~lf~SGGMPSSHSA~VsALATaIGl~eGf~SplFAIA~VfAl  230 (262)
                      +-+|+.   +.+-+++.++.+++|.+++  +.|-.       .+||||.|++...++++.+.+... ....-.+++++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~i~~~lK~~~~--r~RP~-------~~sFPSgHt~~a~a~a~~l~~~~~-~~~~~~~~~~~a~   74 (109)
T cd03383           5 IGESPPHVTFVSLLIVIIVVVILKAYFG--RGTPL-------EGGMPSGHAAIAFSIATAISLITN-NPIISILSVLLAV   74 (109)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHhC--CCCCC-------CCCCChHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence            344544   3455567888888888763  22221       368999999999999998876421 1113345556666


Q ss_pred             hhhc
Q 024830          231 IVMY  234 (262)
Q Consensus       231 IVMY  234 (262)
                      +|.+
T Consensus        75 lv~~   78 (109)
T cd03383          75 MVAH   78 (109)
T ss_pred             HHHH
Confidence            6654

In some prokaryotes, PAP2_like phosphatase domains appear fused to E. coli DAGK-like trans-membrane diacylglycerol kinase domains. The cellular function of these architectures remains to be determined.

>PF01569 PAP2: PAP2 superfamily This family includes the following Prosite family; InterPro: IPR000326 This entry represents type 2 phosphatidic acid phosphatase (PAP2; 3

Probab=95.80  E-value=0.051  Score=41.02  Aligned_cols=41  Identities=22%  Similarity=0.381  Sum_probs=27.5

Q ss_pred             cCCCCchhHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHhhh
Q 024830          193 SGGMPSSHSALCTALTTSVALCHGVADSL----FPVCLGFSLIVM  233 (262)
Q Consensus       193 SGGMPSSHSA~VsALATaIGl~eGf~Spl----FAIA~VfAlIVM  233 (262)
                      .++|||.|++...+.++.+....+.....    +.+..+++++|.
T Consensus        48 ~~sfPSgH~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~   92 (129)
T PF01569_consen   48 FNSFPSGHAAIAAAFAFFLAYYLGSRGWIRILLFLLAIVLAFLVA   92 (129)
T ss_dssp             S-SSS-HHHHHHHHHHHHHHHHCCCCHHHSEEHHHHHHHHHHHHH
T ss_pred             CCcCcchhhhhHHHHHhhhhhhhhccccccchhhHHHHHHHHHhh
Confidence            35999999999999999988887766554    334444444443

1.3.4 from EC) enzymes, such as phosphatidylglycerophosphatase B 3.1.3.27 from EC from Escherichia coli. PAP2 enzymes have a core structure consisting of a 5-helical bundle, where the beginning of the third helix binds the cofactor []. PAP2 enzymes catalyse the dephosphorylation of phosphatidate, yielding diacylglycerol and inorganic phosphate []. In eukaryotic cells, PAP activity has a central role in the synthesis of phospholipids and triacylglycerol through its product diacylglycerol, and it also generates and/or degrades lipid-signalling molecules that are related to phosphatidate. Other related enzymes have a similar core structure, including haloperoxidases such as bromoperoxidase (contains one core bundle, but forms a dimer), chloroperoxidases (contains two core bundles arranged as in other family dimers), bacitracin transport permease from Bacillus licheniformis, glucose-6-phosphatase from rat. The vanadium-dependent haloperoxidases exclusively catalyse the oxidation of halides, and act as histidine phosphatases, using histidine for the nucleophilic attack in the first step of the reaction []. Amino acid residues involved in binding phosphate/vanadate are conserved between the two families, supporting a proposal that vanadium passes through a tetrahedral intermediate during the reaction mechanism.; GO: 0003824 catalytic activity, 0016020 membrane; PDB: 1QI9_B 1IW8_A 1EOI_A 1D2T_A 1QHB_D 1UP8_C 2IPB_A 1VNS_A 1VNF_A 1VNE_A ....

>cd03391 PAP2_containing_2_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_2

Probab=95.70  E-value=0.019  Score=47.91  Aligned_cols=72  Identities=13%  Similarity=0.007  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccch----hhhh--hcCCCCchhHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhc
Q 024830          161 VSGLFAWMIAQSTKVFLNFFVERKWDL----RLLF--ASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMY  234 (262)
Q Consensus       161 iaAliAw~vAQ~iKvii~~l~~rk~D~----~~lf--~SGGMPSSHSA~VsALATaIGl~eGf~SplFAIA~VfAlIVMY  234 (262)
                      .+.+++.++.+++|..+.-  .|-+..    ....  ..-+|||.|++...++++.+.+..+.......+.++++++|.+
T Consensus        54 ~~~~~~~~~~~~lK~~~~r--~RP~~~~~~~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~~~~~~~~~~~~a~~v~~  131 (159)
T cd03391          54 LGLLLDIITVAILKALVRR--RRPAYNSPDMLDYVAVDKYSFPSGHASRAAFVARFLLNHLVLAVPLRVLLVLWATVVGI  131 (159)
T ss_pred             HHHHHHHHHHHHHHHHhCC--CCCCCCCCccchhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444556677777876542  222211    1112  2338999999999999988887655333344445555666544

PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to eukaryota, lacks functional characterization and may act as a membrane-associated phosphatidic acid phosphatase.

>cd03382 PAP2_dolichyldiphosphatase PAP2_like proteins, dolichyldiphosphatase subfamily

Probab=95.59  E-value=0.087  Score=43.84  Aligned_cols=49  Identities=22%  Similarity=0.114  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchhh--hhhcCCCCchhHHHHHHHHHHHHH
Q 024830          162 SGLFAWMIAQSTKVFLNFFVERKWDLRL--LFASGGMPSSHSALCTALTTSVAL  213 (262)
Q Consensus       162 aAliAw~vAQ~iKvii~~l~~rk~D~~~--lf~SGGMPSSHSA~VsALATaIGl  213 (262)
                      +.+++.++.+++|.+++  +.| -+...  --..-||||.|++...++++.+.+
T Consensus        50 ~~~~~~~~~~~lK~~~~--rpR-P~~~~~~~~~~~SFPSgHa~~~~~~~~~~~l  100 (159)
T cd03382          50 GLLANEALNYVLKRIIK--EPR-PCSGAYFVRSGYGMPSSHSQFMGFFAVYLLL  100 (159)
T ss_pred             HHHHHHHHHHHHHHHhC--CCC-cCCCCcCCCCCCCCCchhHHHHHHHHHHHHH
Confidence            33445555566666553  122 22111  134669999999987777766654

Dolichyldiphosphatase is a membrane-associated protein located in the endoplasmic reticulum and hydrolyzes dolichyl pyrophosphate, as well as dolichylmonophosphate at a low rate. The enzyme is necessary for maintaining proper levels of dolichol-linked oligosaccharides and protein N-glycosylation, and might play a role in re-utilization of the glycosyl carrier lipid for additional rounds of lipid intermediate biosynthesis after its release during protein N-glycosylation reactions.

>cd03388 PAP2_SPPase1 PAP2_like proteins, sphingosine-1-phosphatase subfamily

Probab=95.51  E-value=0.064  Score=43.87  Aligned_cols=53  Identities=25%  Similarity=0.231  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccch---hhh----hhcCCCCchhHHHHHHHHHHHHHH
Q 024830          160 FVSGLFAWMIAQSTKVFLNFFVERKWDL---RLL----FASGGMPSSHSALCTALTTSVALC  214 (262)
Q Consensus       160 LiaAliAw~vAQ~iKvii~~l~~rk~D~---~~l----f~SGGMPSSHSA~VsALATaIGl~  214 (262)
                      +.+.+++.++.+++|.+++.  .|-...   ...    -..-||||.|++...++++.+.+.
T Consensus        39 ~~~~~~~~~~~~~lK~~~~r--~RP~~~~~~~~~~~~~~~~~SFPSgH~~~a~~~~~~l~~~   98 (151)
T cd03388          39 VVVLALGMYIGQFIKDLFCL--PRPSSPPVVRLTMSSAALEYGFPSTHAMNATAISFYLLIY   98 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHcC--CCcCCCchhhhhccccCCCCCCChHHHHHHHHHHHHHHHH
Confidence            44555677788888988773  222211   111    133489999999999999888764

Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second messenger in the cell, and extracellularly by binding to G-protein coupled receptors of the endothelial differentiation gene family.

>cd03392 PAP2_like_2 PAP2_like_2 proteins

Probab=95.50  E-value=0.059  Score=44.54  Aligned_cols=52  Identities=19%  Similarity=0.045  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchhh-hhhcCCCCchhHHHHHHHHHHHHH
Q 024830          160 FVSGLFAWMIAQSTKVFLNFFVERKWDLRL-LFASGGMPSSHSALCTALTTSVAL  213 (262)
Q Consensus       160 LiaAliAw~vAQ~iKvii~~l~~rk~D~~~-lf~SGGMPSSHSA~VsALATaIGl  213 (262)
                      +.+.+++.++.+++|.++.  +.|-..... --...+|||.|++...+++..+.+
T Consensus        68 ~~~~~~~~~~~~~lK~~~~--r~RP~~~~~~~~~~~sfPSgHa~~~~~~~~~l~~  120 (182)
T cd03392          68 LLALLGGGALNTLLKLLVQ--RPRPPLHLLVPEGGYSFPSGHAMGATVLYGFLAY  120 (182)
T ss_pred             HHHHHHHHHHHHHHHHHhc--CCCCCCcccCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence            4445677788888888875  222221111 124568999999999888766654

PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.

>cd01610 PAP2_like PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies

Probab=95.46  E-value=0.054  Score=39.65  Aligned_cols=53  Identities=23%  Similarity=0.159  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhh----------hhcCCCCchhHHHHHHHHHHHHHHhcC
Q 024830          163 GLFAWMIAQSTKVFLNFFVERKWDLRLL----------FASGGMPSSHSALCTALTTSVALCHGV  217 (262)
Q Consensus       163 AliAw~vAQ~iKvii~~l~~rk~D~~~l----------f~SGGMPSSHSA~VsALATaIGl~eGf  217 (262)
                      ...+.++.+.+|.+..  +.|-+.....          -...||||.|++...++++.+....+-
T Consensus        12 ~~~~~~~~~~~k~~~~--~~rP~~~~~~~~~~~~~~~~~~~~sfPSgH~~~~~~~~~~l~~~~~~   74 (122)
T cd01610          12 LLAGLLLTGVLKYLFG--RPRPYFLLRCGPDGDPLLLTEGGYSFPSGHAAFAFALALFLALLLPR   74 (122)
T ss_pred             HHHHHHHHHHHHHHhC--CCCCChHHhcCCccchhhhcCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            3344446777887732  3333332221          235899999999999999999887664

Several members of this superfamily have been predicted to be transmembrane proteins.

>cd03393 PAP2_like_3 PAP2_like_3 proteins

Probab=95.40  E-value=0.05  Score=42.96  Aligned_cols=54  Identities=15%  Similarity=0.124  Sum_probs=34.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccchh-------hhhhcCCCCchhHHHHHHHHHHHHHH
Q 024830          159 TFVSGLFAWMIAQSTKVFLNFFVERKWDLR-------LLFASGGMPSSHSALCTALTTSVALC  214 (262)
Q Consensus       159 vLiaAliAw~vAQ~iKvii~~l~~rk~D~~-------~lf~SGGMPSSHSA~VsALATaIGl~  214 (262)
                      .+.+.+++.++.+++|.++.  +.|-....       .--...|+||.|+++..++.+.+...
T Consensus        18 ~~~~~~~~~~~~~~lK~~~~--r~RP~~~~~~~~~~~~~~~~~sFPSgHa~~~~~~~~~~~~~   78 (125)
T cd03393          18 LGLALCASGYLNAALKEVFK--IPRPFTYDGIQAIYEESAGGYGFPSGHAQTSATFWGSLMLH   78 (125)
T ss_pred             HHHHHHHHHHHHHHHHHHHC--CCCcCCCcccchhccCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            45667778888888888764  22322111       11245789999999887776666543

PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria and archaea, lacks functional characterization and may act as a membrane-associated lipid phosphatase.

>PRK09597 lipid A 1-phosphatase; Reviewed

Probab=95.18  E-value=0.089  Score=46.89  Aligned_cols=71  Identities=17%  Similarity=0.118  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--hcccchhhhhhcCCCCchhHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhh
Q 024830          161 VSGLFAWMIAQSTKVFLNFFV--ERKWDLRLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVM  233 (262)
Q Consensus       161 iaAliAw~vAQ~iKvii~~l~--~rk~D~~~lf~SGGMPSSHSA~VsALATaIGl~eGf~SplFAIA~VfAlIVM  233 (262)
                      .+.+.+.++.+++|..++-..  +-+.+.+.--.+-||||.|++...+.++.+...++....  .+.++++++|+
T Consensus        84 ~al~~~~ll~~~LK~~~~R~~~~~~r~~~~p~~~~~SFPSGHt~~af~~a~~l~~~~~~~~~--~~~l~lallVg  156 (190)
T PRK09597         84 NASIATTLLTHTTKRALNHVTINDQRLGERPYGGNFNMPSGHSSMVGLAVAFLMRRYSFKKY--WWLLPLIPLTM  156 (190)
T ss_pred             HHHHHHHHHHHHHHHHhccccccccccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHchhHH--HHHHHHHHHHH
Confidence            345555566667777665210  011222211123589999999998888777766666543  22334444443

>cd03385 PAP2_BcrC_like PAP2_like proteins, BcrC_like subfamily

Probab=94.31  E-value=0.27  Score=39.69  Aligned_cols=40  Identities=25%  Similarity=0.239  Sum_probs=24.5

Q ss_pred             hcCCCCchhHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhh
Q 024830          192 ASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVM  233 (262)
Q Consensus       192 ~SGGMPSSHSA~VsALATaIGl~eGf~SplFAIA~VfAlIVM  233 (262)
                      ..-+|||.|++...++++.+.+.+--  -...+.++++++|+
T Consensus        75 ~~~SFPSgH~~~~~~~~~~l~~~~~~--~~~~~~~~~a~~v~  114 (144)
T cd03385          75 ADSSFPSDHTTLFFSIAFSLLLRRRK--WAGWILLILALLVA  114 (144)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHH
Confidence            34689999999988888766543211  12333445555544

Several members of this family have been annotated as bacitracin transport permeases, as it was suspected that they form the permease component of an ABC transporter system. It was shown, however, that BcrC from Bacillus subtilis posesses undecaprenyl pyrophosphate (UPP) phospatase activity, and it is hypothesized that it competes with bacitracin for UPP, increasing the cell's resistance to bacitracin.

>cd03395 PAP2_like_4 PAP2_like_4 proteins

Probab=94.04  E-value=0.15  Score=42.32  Aligned_cols=71  Identities=25%  Similarity=0.162  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchhh------hh---hcCCCCchhHHHHHHHHHHHHHHhcCCCChhHHHHHHHHh
Q 024830          161 VSGLFAWMIAQSTKVFLNFFVERKWDLRL------LF---ASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLI  231 (262)
Q Consensus       161 iaAliAw~vAQ~iKvii~~l~~rk~D~~~------lf---~SGGMPSSHSA~VsALATaIGl~eGf~SplFAIA~VfAlI  231 (262)
                      .+.+.+.++.+++|.++.-  .|-.....      +.   ..=++||.|++...++++.+.+..--. ....+.+++++.
T Consensus        64 ~~~~~~~~~~~~lK~~~~r--~RP~~~~~~~~~~~~~~~~~~~SFPSgHt~~a~~~~~~l~~~~~~~-~~~~~~~~~~~~  140 (177)
T cd03395          64 AVGFADQLASGFLKPLVAR--LRPCNALDGVRLVVLGDQGGSYSFASSHAANSFALALFIWLFFRRG-LFSPVLLLWALL  140 (177)
T ss_pred             HHHHHHHHHHHHHHHHhCC--CCCCCCccccccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            3444556677777776652  22221111      11   223799999999999999887542110 233455666666


Q ss_pred             hhc
Q 024830          232 VMY  234 (262)
Q Consensus       232 VMY  234 (262)
                      |.+
T Consensus       141 v~~  143 (177)
T cd03395         141 VGY  143 (177)
T ss_pred             HHH
Confidence            654

PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.

>PLN02525 phosphatidic acid phosphatase family protein

Probab=93.77  E-value=0.14  Score=48.92  Aligned_cols=71  Identities=17%  Similarity=0.088  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchhhhh--------hc-CCCCchhHHHHHHHHHHHHHH----hcCCCC-----hhHHH
Q 024830          164 LFAWMIAQSTKVFLNFFVERKWDLRLLF--------AS-GGMPSSHSALCTALTTSVALC----HGVADS-----LFPVC  225 (262)
Q Consensus       164 liAw~vAQ~iKvii~~l~~rk~D~~~lf--------~S-GGMPSSHSA~VsALATaIGl~----eGf~Sp-----lFAIA  225 (262)
                      .++.++.|++|-++..-+=..-...++.        .. =||||+||+..++++..+.+.    ....++     .++++
T Consensus        45 ~~~~~l~~~lKd~v~rPRP~~pp~~ri~~~~~~~~~a~eYsFPSgHt~nA~av~~~ll~~l~~~~~~~~~~~~~~~~~l~  124 (352)
T PLN02525         45 AFCDYVGNCIKDVVSAPRPSCPPVRRVTATKDEEENAMEYGLPSSHTLNTVCLSGYLLHYVLSYLQNVDASVIFAGLALF  124 (352)
T ss_pred             HHHHHHHHHHHHhhcCCCcCCcchhhhhcccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence            4455778889977763221100111121        11 289999999999998766543    111122     13445


Q ss_pred             HHHHHhhhc
Q 024830          226 LGFSLIVMY  234 (262)
Q Consensus       226 ~VfAlIVMY  234 (262)
                      +++++.|++
T Consensus       125 ~l~allV~~  133 (352)
T PLN02525        125 CLLVALVGF  133 (352)
T ss_pred             HHHHHHHHH
Confidence            566666655

>cd03389 PAP2_lipid_A_1_phosphatase PAP2_like proteins, Lipid A 1-phosphatase subfamily

Probab=93.22  E-value=0.39  Score=40.82  Aligned_cols=54  Identities=24%  Similarity=0.220  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchhh-----------hhhcCCCCchhHHHHHHHHHHHHHHh
Q 024830          160 FVSGLFAWMIAQSTKVFLNFFVERKWDLRL-----------LFASGGMPSSHSALCTALTTSVALCH  215 (262)
Q Consensus       160 LiaAliAw~vAQ~iKvii~~l~~rk~D~~~-----------lf~SGGMPSSHSA~VsALATaIGl~e  215 (262)
                      +++.+++.++.+.+|.++.  +.|......           --...++||.|++...++++.+++..
T Consensus        75 ~~~~~~~~~i~~~lK~~~~--R~RP~~~~~~~~~~~~~~~~~~~~~SFPSGHa~~a~~~~~~l~~~~  139 (186)
T cd03389          75 FATVALSGILVNLLKFIIG--RARPKLLFDDGLYGFDPFHADYAFTSFPSGHSATAGAAAAALALLF  139 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHC--CCCCChhhcCCcccccccccCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence            3334455667777777764  222221111           01223799999999999998887654

Lipid A 1-phosphatase, or LpxE from Francisella novicida selectively dephosphorylates lipid A at the 1-position. Lipid A is the membrane-anchor component of lipopolysaccharides (LPS), the major constituents of the outer membrane in many gram-negative bacteria.

>cd03384 PAP2_wunen PAP2, wunen subfamily

Probab=91.82  E-value=0.74  Score=38.09  Aligned_cols=20  Identities=30%  Similarity=0.370  Sum_probs=16.3

Q ss_pred             CCCCchhHHHHHHHHHHHHH
Q 024830          194 GGMPSSHSALCTALTTSVAL  213 (262)
Q Consensus       194 GGMPSSHSA~VsALATaIGl  213 (262)
                      =+|||.||+...+.++.+.+
T Consensus        72 ~SFPSGHs~~a~~~~~~l~l   91 (150)
T cd03384          72 LSFPSGHASLSMYAAVFLAL   91 (150)
T ss_pred             cCCCcHhHHHHHHHHHHHHH
Confidence            47999999999877776654

Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the survival of PGCs and is essential in the migration process of these cells towards the somatic gonadal precursors.

>COG0671 PgpB Membrane-associated phospholipid phosphatase [Lipid metabolism]

Probab=91.77  E-value=1.1  Score=35.12  Aligned_cols=44  Identities=23%  Similarity=0.213  Sum_probs=29.9

Q ss_pred             hcCCCCchhHHHHHHHHHHHHHHhcCCCC------hhHHHHHHHHhhhcc
Q 024830          192 ASGGMPSSHSALCTALTTSVALCHGVADS------LFPVCLGFSLIVMYD  235 (262)
Q Consensus       192 ~SGGMPSSHSA~VsALATaIGl~eGf~Sp------lFAIA~VfAlIVMYD  235 (262)
                      ..++|||.|++...+.++..++....-..      ...+.++++..|++.
T Consensus       132 ~~~sfPSgHt~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~~S  181 (232)
T COG0671         132 SGYSFPSGHAAGAAAAALLLALLLPLRRALLRRVLLLILLLLLAALVGLS  181 (232)
T ss_pred             ccCCCCChhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            45679999999998888777766554432      235566666666654

>PRK11837 undecaprenyl pyrophosphate phosphatase; Provisional

Probab=91.47  E-value=0.61  Score=40.77  Aligned_cols=72  Identities=8%  Similarity=0.142  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccch------hhhhhcCCCCchhHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhh
Q 024830          159 TFVSGLFAWMIAQSTKVFLNFFVERKWDL------RLLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIV  232 (262)
Q Consensus       159 vLiaAliAw~vAQ~iKvii~~l~~rk~D~------~~lf~SGGMPSSHSA~VsALATaIGl~eGf~SplFAIA~VfAlIV  232 (262)
                      .+.+.+++.++.+++|.+++  +.|....      -.--..-.+||.|++...+.++++-+...-  ....+.++++++|
T Consensus        64 ~~~~~~~~~~~~~~lk~~~~--r~RP~~~~~~~~~~~~~~~~SFPSgHa~~~~~~a~~~l~~~~~--~~~~~~~~~a~lv  139 (202)
T PRK11837         64 IAIALAISLLVSWTIGHLFP--HDRPFVEGIGYNFLHHAADDSFPSDHGTVIFTFALAFLFWHRL--WSGSLLMAIAVAI  139 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHhc--CCCCCCCccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            34555777888888888775  2222110      001244679999999877776543222110  1233445555555


Q ss_pred             hc
Q 024830          233 MY  234 (262)
Q Consensus       233 MY  234 (262)
                      ++
T Consensus       140 a~  141 (202)
T PRK11837        140 AW  141 (202)
T ss_pred             HH
Confidence            54

>KOG3146 consensus Dolichyl pyrophosphate phosphatase and related acid phosphatases [Lipid transport and metabolism]

Probab=89.73  E-value=1.2  Score=41.18  Aligned_cols=78  Identities=24%  Similarity=0.372  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcccchhh--------hhhcCCCCchhHHHHHHHHH--HHHHHhcCCCChhHHHH--------
Q 024830          165 FAWMIAQSTKVFLNFFVERKWDLRL--------LFASGGMPSSHSALCTALTT--SVALCHGVADSLFPVCL--------  226 (262)
Q Consensus       165 iAw~vAQ~iKvii~~l~~rk~D~~~--------lf~SGGMPSSHSA~VsALAT--aIGl~eGf~SplFAIA~--------  226 (262)
                      +-.++.|++.=+++++..+.++-.|        +-..=|||||||=.+.=.++  ..-..+++++--|..-.        
T Consensus        58 ~~~~~G~v~Ne~in~viK~il~qpRP~~~~~~t~~s~yGMPSSHSQfM~Ffs~y~~l~~y~~~~~~~~s~~~~i~s~~~l  137 (228)
T KOG3146|consen   58 IWFVIGQVSNEFINVVIKNILKQPRPVSFPDTTLRSGYGMPSSHSQFMGFFSVYSSLSVYKWLGTNNFSRFLFIKSGLLL  137 (228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            3344555555555544333222222        33444899999987754433  33445566665554433        


Q ss_pred             HHHHhhhcccchhhhh
Q 024830          227 GFSLIVMYDAIGVRRH  242 (262)
Q Consensus       227 VfAlIVMYDA~GVRRa  242 (262)
                      .++..|||-=.=.-.|
T Consensus       138 aLs~~v~~sRVyl~yH  153 (228)
T KOG3146|consen  138 ALSFYVCYSRVYLKYH  153 (228)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            5567777754333333

>smart00014 acidPPc Acid phosphatase homologues

Probab=89.55  E-value=1  Score=34.47  Aligned_cols=52  Identities=19%  Similarity=0.186  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccc---------chhh-hhhcCCCCchhHHHHHHHHHHHHHH
Q 024830          163 GLFAWMIAQSTKVFLNFFVERKW---------DLRL-LFASGGMPSSHSALCTALTTSVALC  214 (262)
Q Consensus       163 AliAw~vAQ~iKvii~~l~~rk~---------D~~~-lf~SGGMPSSHSA~VsALATaIGl~  214 (262)
                      .+.+-++.+++|..+..-+=-.+         +... --...++||.|++...+.++.+...
T Consensus         4 ~~~~~~~~~~lK~~~~r~RP~~~~~~~~~~~~~~~~~~~~~~sfPSgHa~~~~~~~~~l~~~   65 (116)
T smart00014        4 AVVSLLFTGVIKNYFGRPRPFFLDIGDACCTPNFLLTLEAGYSFPSGHTAFAFAFALFLLLY   65 (116)
T ss_pred             HHHHHHHHHHHHHHhCCCCcCcccccccccCcchhhhcCCCCCcChHHHHHHHHHHHHHHHH
Confidence            45666677777777652221000         1111 1255789999999999998888753

>cd03390 PAP2_containing_1_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1

Probab=89.52  E-value=0.83  Score=38.69  Aligned_cols=20  Identities=30%  Similarity=0.341  Sum_probs=16.9

Q ss_pred             CCCCchhHHHHHHHHHHHHH
Q 024830          194 GGMPSSHSALCTALTTSVAL  213 (262)
Q Consensus       194 GGMPSSHSA~VsALATaIGl  213 (262)
                      -+|||.|++...++++.+++
T Consensus       110 ~SFPSGHas~a~~~~~~l~l  129 (193)
T cd03390         110 KSFPSGHSSFAFAGLGFLSL  129 (193)
T ss_pred             cCCCCccHHHHHHHHHHHHH
Confidence            37999999999888877765

Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both diacylglycerol pyrophosphate phosphatase activity as well as phosphatidate (PA) phosphatase activity, they may have a more generic housekeeping role in lipid metabolism.

>PRK10699 phosphatidylglycerophosphatase B; Provisional

Probab=89.51  E-value=1.6  Score=40.10  Aligned_cols=41  Identities=17%  Similarity=0.142  Sum_probs=22.9

Q ss_pred             CCCCchhHHHHHHHHH-HHHHH-hcCCCChhHHHHHHHHhhhc
Q 024830          194 GGMPSSHSALCTALTT-SVALC-HGVADSLFPVCLGFSLIVMY  234 (262)
Q Consensus       194 GGMPSSHSA~VsALAT-aIGl~-eGf~SplFAIA~VfAlIVMY  234 (262)
                      -||||.|++..++++. .+++- ..-....+.+.++.++.|+|
T Consensus       157 ySFPSGHa~~a~~~~l~~~~ll~~~~~~~~~~~~~~wa~~v~~  199 (244)
T PRK10699        157 FAFPSGHTMFAASWALLAVGLLWPRRRYKTVALLMLWATGVMG  199 (244)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999998766543 22221 11112234455566666665

>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily

Probab=88.70  E-value=1  Score=40.84  Aligned_cols=20  Identities=30%  Similarity=0.343  Sum_probs=14.6

Q ss_pred             cCCCCchhHHHHHHHHHHHH
Q 024830          193 SGGMPSSHSALCTALTTSVA  212 (262)
Q Consensus       193 SGGMPSSHSA~VsALATaIG  212 (262)
                      ..||||+|+...+++...+.
T Consensus        71 gysfPSGHam~a~a~~~~l~   90 (235)
T cd03381          71 GPGSPSGHAMGTTAVLLVMV   90 (235)
T ss_pred             CCCCCcHHHHHHHHHHHHHH
Confidence            57899999977776654443

Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.

>cd03396 PAP2_like_6 PAP2_like_6 proteins

Probab=86.29  E-value=4.5  Score=34.47  Aligned_cols=18  Identities=28%  Similarity=0.316  Sum_probs=14.1

Q ss_pred             cCCCCchhHHHHHHHHHH
Q 024830          193 SGGMPSSHSALCTALTTS  210 (262)
Q Consensus       193 SGGMPSSHSA~VsALATa  210 (262)
                      ...+||.|++...+++..
T Consensus       121 ~~SFPSGHas~af~~~~~  138 (197)
T cd03396         121 GCSFPSGHASAGFALLAL  138 (197)
T ss_pred             CCcCCchhHHHHHHHHHH
Confidence            347999999998887543

PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which mainly contains bacterial proteins, lacks functional characterization and may act as a membrane-associated lipid phosphatase.

>PLN02731 Putative lipid phosphate phosphatase

Probab=82.06  E-value=5.3  Score=38.37  Aligned_cols=19  Identities=21%  Similarity=0.289  Sum_probs=16.7

Q ss_pred             CCCchhHHHHHHHHHHHHH
Q 024830          195 GMPSSHSALCTALTTSVAL  213 (262)
Q Consensus       195 GMPSSHSA~VsALATaIGl  213 (262)
                      ++||.||+...+..+.+++
T Consensus       180 SFPSGHSS~sfagl~fLsl  198 (333)
T PLN02731        180 SFPSGHTSWSFSGLGFLSL  198 (333)
T ss_pred             CCCchhHHHHHHHHHHHHH
Confidence            7999999999888887776

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
2ipb_A	230	PHON protein, class A nonspecific acid phosphatase	88.83

>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A

Probab=88.83  E-value=1.2  Score=37.53  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=20.1

Q ss_pred             hhcCCCCchhHHHHHHHHHHHHHHh
Q 024830          191 FASGGMPSSHSALCTALTTSVALCH  215 (262)
Q Consensus       191 f~SGGMPSSHSA~VsALATaIGl~e  215 (262)
                      -...+|||.|++...++++.+.+..
T Consensus       129 ~~~~SFPSGHa~~a~a~a~~l~~~~  153 (230)
T 2ipb_A          129 RKDGSYPSGHDAYSTLLALVLSQAR  153 (230)
T ss_dssp             HTSCCSSCHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCcChHHHHHHHHHHHHHHHHH
Confidence            3567899999999998888776643

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00