Citrus Sinensis ID: 024838

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCIKNQKQSFPACDEQKKPDDHAFTLSETDIH
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccHHHHHHHHEEccEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHEEEccccccccccccHHHHHHHHHccccccccEEEEEHHHHccccEEEEccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHEEEEccccHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFykgpavpslkgapihlgtnsvhenwlKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQpkaaawsttsgiDLWCIIYSGAVSSCLNLFIQLWCIeqrgpvfvtifNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSllwgkegdqhciknqkqsfpacdeqkkpddhaftlsetdih
Flexible Loop (DISEMBL)
MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCIKNQKQsfpacdeqkkpddhaftlsetdih
Low Complexity Region (SEG)
MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTgcilggliviiglysllWGKEGDQHCIKNQKQSFPACDEQKKPDDHAFTLSETDIH
Disordered region (IsUnstruct)
**YVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCI*****************************
Disordered Region (DISOPRED)
MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW**************************************
Disordered Region (DISEMBL)
MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCIKNQKQSFPACDEQKKPDDHAFTLSETDIH
Disordered Region (DISPRO)
MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKG***********ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKE***********************************
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCIKNQKQSFPACDEQKKPDDHAFTLSETDIH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q9SUF1	384	WAT1-related protein At4g	yes	no	0.984	0.671	0.363	5e-48
Q501F8	373	WAT1-related protein At4g	no	no	0.988	0.694	0.348	1e-46
Q6J163	410	Auxin-induced protein 5NG	N/A	no	0.958	0.612	0.347	2e-43
Q9LPF1	370	WAT1-related protein At1g	no	no	0.992	0.702	0.338	4e-43
Q9LV20	383	WAT1-related protein At3g	no	no	0.988	0.676	0.334	3e-41
F4IJ08	394	WAT1-related protein At2g	no	no	0.942	0.626	0.317	9e-41
Q9FL41	402	WAT1-related protein At5g	no	no	0.992	0.646	0.338	9e-41
O80638	374	WAT1-related protein At2g	no	no	0.919	0.644	0.362	4e-40
F4HZQ7	389	WAT1-related protein At1g	no	no	0.908	0.611	0.314	1e-39
Q94AP3	389	Protein WALLS ARE THIN 1	no	no	0.916	0.616	0.339	3e-39

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  191 bits (485), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 99/272 (36%), Positives = 155/272 (56%), Gaps = 14/272 (5%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           M     T+ +A++N +P +TFIIA + R+E V++   R  AKI+GTL  L G +V+  YK
Sbjct: 98  MNMTSATYTSAIMNILPSVTFIIAWILRMEKVNIAEVRSKAKIIGTLVGLGGALVMTLYK 157

Query: 61  GPAVP------SLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAK 114
           GP +P      ++     H   +  H NW+ G++L +  C+ WS FY++Q+ T+K YPA 
Sbjct: 158 GPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLILLGCVAWSGFYVLQSITIKTYPAD 217

Query: 115 LSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIE 174
           LS+SA +   GA QS    ++V+   + W+      L+  +Y+G VSS +  ++Q   ++
Sbjct: 218 LSLSALICLAGAVQSFAVALVVERHPSGWAVGWDARLFAPLYTGIVSSGITYYVQGMVMK 277

Query: 175 QRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCI- 233
            RGPVFVT FNPL  ++VA+ A F++ E++H GC++GG ++  GLY ++WGK  D     
Sbjct: 278 TRGPVFVTAFNPLCMILVALIASFILHEQIHFGCVIGGAVIAAGLYMVVWGKGKDYEVSG 337

Query: 234 -----KNQKQSFPACDEQKKPDDHAFTLSETD 260
                KN  Q  P     K  DD+    S +D
Sbjct: 338 LDILEKNSLQELPIT--TKSEDDNKLVSSISD 367

Arabidopsis thaliana (taxid: 3702)

>sp|Q501F8|WTR32_ARATH WAT1-related protein At4g08300 OS=Arabidopsis thaliana GN=At4g08300 PE=2 SV=1

 Score =  186 bits (473), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/270 (34%), Positives = 153/270 (56%), Gaps = 11/270 (4%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           MK    T+ +A VN +P +TFI+AV+FR+E V+++  R +AK++GT  ++ G MV+  YK
Sbjct: 96  MKATSATYSSAFVNALPAITFIMAVIFRIETVNLKKTRSLAKVIGTAITVGGAMVMTLYK 155

Query: 61  GPAVP-------SLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPA 113
           GPA+        SL G      + +  +NW+ G++  + S   W+ F+I+Q+FTLKKYPA
Sbjct: 156 GPAIELFKTAHSSLHGGSSGTSSETTDQNWVTGTLAVMGSITTWAGFFILQSFTLKKYPA 215

Query: 114 KLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCI 173
           +LS+  W+  +G   + + ++I+    +AW           +YSG V S +  +IQ   I
Sbjct: 216 ELSLVMWICAMGTVLNTIASLIMVRDVSAWKVGMDSGTLAAVYSGVVCSGMAYYIQSIVI 275

Query: 174 EQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCI 233
            +RGPVF T F+P+  +I A     ++ EK+H G I+G + ++ GLYS++WGK  D+   
Sbjct: 276 RERGPVFTTSFSPMCMIITAFLGVLVLAEKIHLGSIIGAIFIVFGLYSVVWGKAKDEVIS 335

Query: 234 KNQK---QSFPACDEQKKPDDHAFTLSETD 260
             +K   Q  P  +   K +    T SE +
Sbjct: 336 VEEKIGMQELPITNTSTKVEGGGIT-SEVN 364

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J163|5NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/262 (34%), Positives = 151/262 (57%), Gaps = 11/262 (4%)

Query: 6   PTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAV- 64
           PTF +A+ N++P +TFI+A   RLE V +    G+AKI+GT+A + G  +I  YKGP + 
Sbjct: 109 PTFASAIQNSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPIT 168

Query: 65  ----PSLKGAPIHLGT------NSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAK 114
               P+L+    +         ++  ENW  G I  + +C+ WS + ++QA  LK+YPA+
Sbjct: 169 HIWRPNLEVTASYFKAFQGNDLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPAR 228

Query: 115 LSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIE 174
           LS++++    G  Q  +     +     W   SG +L+ I+Y+G V+S +   +Q+WCI+
Sbjct: 229 LSVTSFTCFFGVIQFLIIAAFFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCID 288

Query: 175 QRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCIK 234
           + GPVFV ++ P+ T+ VA+ A  ++GE+ + G I G +++IIGLY +LWGK  ++    
Sbjct: 289 RGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKRLGL 348

Query: 235 NQKQSFPACDEQKKPDDHAFTL 256
            Q +S    + Q    D + TL
Sbjct: 349 LQAKSSMVPENQPDNMDQSATL 370

Pinus taeda (taxid: 3352)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score =  174 bits (442), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 91/269 (33%), Positives = 158/269 (58%), Gaps = 9/269 (3%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           +K    ++ +A  N +P +TFI+A++FRLE V+ R    +AK++GT+ ++ G M++  YK
Sbjct: 96  LKNTSASYTSAFTNALPAVTFILALIFRLETVNFRKVHSVAKVVGTVITVGGAMIMTLYK 155

Query: 61  GPAVPSLKGA--PIHLGTNSV--HENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLS 116
           GPA+  +K A    H G++S    ++W+ G+I  + S   W++F+I+Q++TLK YPA+LS
Sbjct: 156 GPAIEIVKAAHNSFHGGSSSTPTGQHWVLGTIAIMGSISTWAAFFILQSYTLKVYPAELS 215

Query: 117 ISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQR 176
           +   +  IG   +A+ ++I+    +AW           +YSG V S +  +IQ   I+QR
Sbjct: 216 LVTLICGIGTILNAIASLIMVRDPSAWKIGMDSGTLAAVYSGVVCSGIAYYIQSIVIKQR 275

Query: 177 GPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQ-----H 231
           GPVF T F+P+  +I A     ++ EK+H G I+G + +++GLYS++WGK  D+      
Sbjct: 276 GPVFTTSFSPMCMIITAFLGALVLAEKIHLGSIIGAVFIVLGLYSVVWGKSKDEVNPLDE 335

Query: 232 CIKNQKQSFPACDEQKKPDDHAFTLSETD 260
            I  + Q  P  +  K+ + H  + + T+
Sbjct: 336 KIVAKSQELPITNVVKQTNGHDVSGAPTN 364

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score =  168 bits (426), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 159/266 (59%), Gaps = 7/266 (2%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           + Y  PTF +A+ N++P +TFI+A   RLE +D+    G+AK+LGTL S+ G  VI  Y+
Sbjct: 120 LYYATPTFASAMQNSVPAITFIMACALRLEHIDLVRKHGVAKVLGTLVSIGGATVITLYR 179

Query: 61  GPAVPSLKGAPIH----LGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLS 116
           G  +   +G  +     +G+++ H   L G +  +  C+ W+ + ++QA  LK+YPAKL+
Sbjct: 180 GFPIFD-QGLNMQKEEVVGSDNSHSLTL-GWLYLMGHCLSWAGWMVLQAPVLKQYPAKLT 237

Query: 117 ISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQR 176
           ++++    G  Q  V  + V+     W   S  +L+ I+Y+G ++S L +++Q WCI + 
Sbjct: 238 LTSFTCFFGLIQFLVIALFVETDLNNWIIVSWEELFTILYAGIIASGLVVYLQTWCIYKS 297

Query: 177 GPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCIKNQ 236
           GPVFV +F PL T++VA  A+ ++G++L++G I+G + +++GLY +LWGK  ++     +
Sbjct: 298 GPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGIVGAVFIMLGLYLVLWGKNEERKLALEE 357

Query: 237 KQSFP-ACDEQKKPDDHAFTLSETDI 261
            Q  P +  +      H  + SE+++
Sbjct: 358 SQQDPESLTKHLLEAQHKKSNSESEV 383

Arabidopsis thaliana (taxid: 3702)

>sp|F4IJ08|WTR15_ARATH WAT1-related protein At2g40900 OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1

 Score =  167 bits (422), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 157/268 (58%), Gaps = 21/268 (7%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           +K   PTF +AV N +P +T I+A +FR+E V++R  R + K++GTL ++VG +++ FYK
Sbjct: 96  LKLTSPTFSSAVSNIVPAITIILATLFRMEKVEMRKVRCLVKVMGTLVTVVGSILMIFYK 155

Query: 61  GPAVPSLKGAPIHLGTNSV--HENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSIS 118
           GP +   +    HL   S     ++LK ++  + + + W+SF+++QA TLKKY A LS+S
Sbjct: 156 GPFINFFRS---HLTAASSPPTADYLKAAVFLLLASLSWASFFVLQAATLKKYSAHLSMS 212

Query: 119 AWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGP 178
             +  +G  QS     +++   +A +    ++L    Y+G +SS +  ++Q   ++++GP
Sbjct: 213 TMVCFMGTLQSLALAFVMEHNPSALNIGFDMNLLASAYAGIMSSSIAYYVQGLMMQRKGP 272

Query: 179 VFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCIKNQKQ 238
           VFVT FNPL  VIV++ ++F++G+ ++ G ++G +++++G+Y++LWGK  D    + + +
Sbjct: 273 VFVTAFNPLIVVIVSIMSFFVLGQGIYLGGVIGVVVLMVGVYAVLWGKHVDDDGEETRHE 332

Query: 239 S----------------FPACDEQKKPD 250
                             P  DE  + D
Sbjct: 333 DNVVAVKCCSGNNGLTIMPKIDEADEED 360

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  167 bits (422), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 157/275 (57%), Gaps = 15/275 (5%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           +KY  PTF  A+ N +P MTFI+AV+FR+E++D++     AKI GT+ ++ G M++  YK
Sbjct: 103 LKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKKLWCQAKIAGTVVTVAGAMLMTIYK 162

Query: 61  GPAVPSLKGAPIHLGTNS-----------VHENWLKGSILTVASCILWSSFYIMQAFTLK 109
           GP V       +H+  +S             + +LKGSIL + + + W+S +++QA  LK
Sbjct: 163 GPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFLKGSILLIFATLAWASLFVLQAKILK 222

Query: 110 KYPA-KLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFI 168
            Y   +LS++  +  IG  Q+   T +++   +AW     ++L    YSG V+S ++ ++
Sbjct: 223 TYAKHQLSLTTLICFIGTLQAVAVTFVMEHNPSAWRIGWDMNLLAAAYSGIVASSISYYV 282

Query: 169 QLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEG 228
           Q   +++RGPVF T F+PL  VIVAV   F++ EK+  G ++G ++++IGLY++LWGK+ 
Sbjct: 283 QGIVMKKRGPVFATAFSPLMMVIVAVMGSFVLAEKIFLGGVIGAVLIVIGLYAVLWGKQK 342

Query: 229 DQH---CIKNQKQSFPACDEQKKPDDHAFTLSETD 260
           +     C   +  S     E  + +     +SE D
Sbjct: 343 ENQVTICELAKIDSNSKVTEDVEANGSKMKISEGD 377

Arabidopsis thaliana (taxid: 3702)

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score =  165 bits (417), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/251 (36%), Positives = 146/251 (58%), Gaps = 10/251 (3%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           MKY   TF  A+ N +P   FI+A +FRLE V+V+     AKILGT+ ++ G M++   K
Sbjct: 93  MKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNVKKIHSQAKILGTIVTVGGAMLMTVVK 152

Query: 61  GPAVPSLKGAP--IHLGTNS--VHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLS 116
           GP +P     P  IH  +++  V ++  KG+ L    CI W+ F  +QA TLK YP +LS
Sbjct: 153 GPLIPLPWANPHDIHQDSSNTGVKQDLTKGASLIAIGCICWAGFINLQAITLKSYPVELS 212

Query: 117 ISAWMNCIGAAQSAVYTIIVQP-KAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQ 175
           ++A++  +G+ +S +  + ++    +AW+      L   +Y G + S +  ++Q   ++ 
Sbjct: 213 LTAYICFLGSIESTIVALFIERGNPSAWAIHLDSKLLAAVYGGVICSGIGYYVQGVIMKT 272

Query: 176 RGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCIKN 235
           RGPVFVT FNPL+ VIVA+    ++ E +  G ILG +++++GLYS+LWGK  D+     
Sbjct: 273 RGPVFVTAFNPLSMVIVAILGSIILAEVMFLGRILGAIVIVLGLYSVLWGKSKDE----- 327

Query: 236 QKQSFPACDEQ 246
              SF   D++
Sbjct: 328 PSSSFSDMDKE 338

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score =  163 bits (413), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 144/251 (57%), Gaps = 13/251 (5%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           M Y   TF +A  N +P +TF++A++FRLE V+ +  R IAK++GT+ ++ G +++  YK
Sbjct: 96  MTYTSATFASATANVLPAITFVLAIIFRLESVNFKKVRSIAKVVGTVITVSGALLMTLYK 155

Query: 61  GPAVPSLK-------------GAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFT 107
           GP V  ++             G+    G  ++ ++W+ G+++ +     W+ F+I+Q+FT
Sbjct: 156 GPIVDFIRFGGGGGGGSDGAGGSHGGAGAAAMDKHWIPGTLMLLGRTFGWAGFFILQSFT 215

Query: 108 LKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLF 167
           LK+YPA+LS++  +  +G  +    +++     +AW      +L+   YSG + S +  +
Sbjct: 216 LKQYPAELSLTTLICLMGTLEGTAVSLVTVRDLSAWKIGFDSNLFAAAYSGVICSGVAYY 275

Query: 168 IQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKE 227
           +Q   + +RGPVFV  FNPL  VI A     ++ E +H G ++G L +I+GLY+++WGK 
Sbjct: 276 VQGVVMRERGPVFVATFNPLCVVITAALGVVVLSESIHLGSVIGTLFIIVGLYTVVWGKG 335

Query: 228 GDQHCIKNQKQ 238
            D+    + + 
Sbjct: 336 KDKRMTDDDED 346

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 146/253 (57%), Gaps = 13/253 (5%)

Query: 6   PTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVP 65
           PTF +++ N++P +TF++A + R+E V +    GI+KILGT   + G  VI  YKGP + 
Sbjct: 110 PTFASSMQNSVPAITFLMAALLRIEKVRINRRDGISKILGTALCVAGASVITLYKGPTIY 169

Query: 66  SLKGAPIH---LGTNSV---------HENWLKGSILTVASCILWSSFYIMQAFTLKKYPA 113
           +   + +H   L TNS           +NW  G I  +  C+ WS + + QA  LK YPA
Sbjct: 170 T-PASHLHAHLLTTNSAVLAPLGNAAPKNWTLGCIYLIGHCLSWSGWLVFQAPVLKSYPA 228

Query: 114 KLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCI 173
           +LS++++    G  Q  +     +  + AW   SG +L+ I+Y+G V+S +   +Q+WCI
Sbjct: 229 RLSVTSYTCFFGIIQFLIIAAFCERDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCI 288

Query: 174 EQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCI 233
           ++ GPVFV ++ P+ T++VA+ A   +GE+ + G I+G +++I GLY +L+GK  ++   
Sbjct: 289 DRGGPVFVAVYQPVQTLVVAIMASIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFA 348

Query: 234 KNQKQSFPACDEQ 246
             +K +  +  E 
Sbjct: 349 ALEKAAIQSSAEH 361

Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
225433049	368	PREDICTED: auxin-induced protein 5NG4 [V	0.984	0.701	0.592	7e-85
255576820	370	Auxin-induced protein 5NG4, putative [Ri	0.996	0.705	0.560	1e-81
255583214	368	Auxin-induced protein 5NG4, putative [Ri	0.942	0.671	0.562	2e-81
297744123	364	unnamed protein product [Vitis vinifera]	0.965	0.695	0.578	2e-81
356545847	370	PREDICTED: auxin-induced protein 5NG4-li	0.988	0.7	0.524	2e-76
357114030	367	PREDICTED: auxin-induced protein 5NG4-li	0.958	0.683	0.5	1e-71
218192100	390	hypothetical protein OsI_10035 [Oryza sa	0.984	0.661	0.509	2e-71
108706201	374	Integral membrane protein DUF6 containin	0.984	0.689	0.505	4e-71
326522246	381	predicted protein [Hordeum vulgare subsp	0.980	0.674	0.462	7e-70
356533791	346	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.877	0.664	0.543	2e-69

>gi|225433049|ref|XP_002280977.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296083618|emb|CBI23607.3| unnamed protein product [Vitis vinifera]

 Score =  319 bits (818), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 154/260 (59%), Positives = 199/260 (76%), Gaps = 2/260 (0%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           ++Y  PTF+ +VVNTI  +TFIIAVV R+E++D R+PRGIAK+LGTL SL GVM +  YK
Sbjct: 102 LRYTSPTFIASVVNTIASLTFIIAVVLRMEVLDFRNPRGIAKVLGTLVSLAGVMTMTLYK 161

Query: 61  GPAVPSLKGAPIHL-GTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISA 119
           GP + SL    IH+ G  ++HENWLKGSILTVASC+ WS +YIMQA TLK+YPA+LS++ 
Sbjct: 162 GPIMKSLWDPLIHIQGNTTIHENWLKGSILTVASCVTWSIWYIMQAITLKRYPAQLSLTT 221

Query: 120 WMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPV 179
           WM+ IGAAQSAV+T+ V+   AAW+    IDLW  +Y+G V S L +F+QLWC E++GPV
Sbjct: 222 WMSFIGAAQSAVFTVCVEHSRAAWTIGFNIDLWSTVYAGVVCSGLIIFVQLWCTEEKGPV 281

Query: 180 FVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHC-IKNQKQ 238
           FVT+FNPL+TV+VAV AYF++GEKL+ G ILGG IVI+GLY LLWGKEGDQ   +K+Q++
Sbjct: 282 FVTMFNPLSTVLVAVLAYFVLGEKLYMGSILGGAIVIVGLYLLLWGKEGDQEAQVKSQEE 341

Query: 239 SFPACDEQKKPDDHAFTLSE 258
           S+ A D Q        T +E
Sbjct: 342 SYSARDLQGGHKTQIITSAE 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576820|ref|XP_002529296.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223531220|gb|EEF33065.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 148/264 (56%), Positives = 195/264 (73%), Gaps = 3/264 (1%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           ++Y  PTF+ +VVNTI  + F+IA+  RLE +D+R+PRG+AK+LGTL SL GVM +  YK
Sbjct: 102 LRYTSPTFVASVVNTIAALAFVIAIALRLESLDLRNPRGLAKLLGTLVSLAGVMTMTLYK 161

Query: 61  GPAVPSLKGAPIHLGTN--SVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSIS 118
           GP + +L   PIH+  N  S HENWLKGSILTVASCI WS +YIMQA TLK+YPA+LS++
Sbjct: 162 GPKMKNLSVTPIHIEGNTASNHENWLKGSILTVASCITWSVWYIMQAVTLKRYPAQLSLT 221

Query: 119 AWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGP 178
           AWM+ +GAAQSA +T+IV+ + AAW+    +D W I+Y G V S   +FIQLWC E +GP
Sbjct: 222 AWMSIVGAAQSAFFTVIVEHRKAAWTIGFNVDFWSILYGGVVMSGAVVFIQLWCTEVKGP 281

Query: 179 VFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHC-IKNQK 237
           VFVT+FNP++T++VAV AYF++GEKL+ G I+G ++VI GLY LLWGKEGDQ    K++ 
Sbjct: 282 VFVTMFNPVSTILVAVIAYFVLGEKLYLGSIVGAVVVIFGLYLLLWGKEGDQPVQSKSED 341

Query: 238 QSFPACDEQKKPDDHAFTLSETDI 261
           Q   +CDEQK    H     ET +
Sbjct: 342 QFDSSCDEQKDNIRHIAGSVETKV 365

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583214|ref|XP_002532372.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223527928|gb|EEF30015.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 139/247 (56%), Positives = 197/247 (79%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           +KY +PTF+T++ N IP MTF+ AV+ RLE+++VR+PRG+AKI+GTL SL G +V+AFYK
Sbjct: 101 LKYTNPTFVTSMTNAIPSMTFLFAVILRLEVINVRTPRGVAKIVGTLMSLAGALVLAFYK 160

Query: 61  GPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAW 120
           GP + SL+GAPIH+ ++ V +NW+KGS L +ASCI WS ++I+Q +TL+KYPA+LS++AW
Sbjct: 161 GPKMKSLQGAPIHIRSSHVQQNWMKGSFLLLASCITWSLWFILQVYTLRKYPAQLSLTAW 220

Query: 121 MNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVF 180
           +N +G AQSAV+T+ +Q K  AW+    I+ WCI+Y+G V   + +F+QLWC +Q+GPVF
Sbjct: 221 INFLGGAQSAVFTLFIQHKPEAWAIKIDINFWCILYAGVVICAVTVFVQLWCTKQKGPVF 280

Query: 181 VTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCIKNQKQSF 240
           VT+F+PL+T++V + AYFL GE+L TG ++GG IVIIGLY LL GKEGDQ   K+ +QSF
Sbjct: 281 VTMFSPLSTILVTILAYFLFGEELRTGSLVGGGIVIIGLYLLLLGKEGDQDRTKSNEQSF 340

Query: 241 PACDEQK 247
           P  D++K
Sbjct: 341 PIHDQEK 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744123|emb|CBI37093.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/254 (57%), Positives = 194/254 (76%), Gaps = 1/254 (0%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           + Y  PTF+ ++VNTI  +TF++A++ RLE +D+R+PRG+AKILGTL SLVGVM++   K
Sbjct: 108 LTYTSPTFLASMVNTIASLTFVMAIILRLEHLDIRNPRGLAKILGTLFSLVGVMIMTSCK 167

Query: 61  GPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAW 120
           GP + +L    IH+G N++HENW KGSILTVASCI WS +YIMQAFT+K+YPA LSI+ W
Sbjct: 168 GPVIRNLSSPLIHIGRNNMHENWTKGSILTVASCITWSIWYIMQAFTMKRYPAPLSITTW 227

Query: 121 MNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVF 180
           MN IG AQSAV  +I+Q K  AWS +  I LW  IY+G V S + +F+ LWC +Q+GPVF
Sbjct: 228 MNFIGGAQSAVIAVIMQHKPEAWSFSVNIQLWSTIYAGVVCSGIMIFLLLWCTKQKGPVF 287

Query: 181 VTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHC-IKNQKQS 239
           VT+FNPL+T++VA  AYF++GEKL+TG I+G +I IIGLY LLWGKE DQ   +K+Q+QS
Sbjct: 288 VTMFNPLSTIMVAFTAYFVLGEKLYTGSIVGAVIAIIGLYLLLWGKEIDQQVGVKSQEQS 347

Query: 240 FPACDEQKKPDDHA 253
               +EQK+P   A
Sbjct: 348 NLTSEEQKEPTQIA 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545847|ref|XP_003541345.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/261 (52%), Positives = 191/261 (73%), Gaps = 2/261 (0%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           +KY  P+F+ +++NTI  +TFIIAV  RLE+VDV+ PRG+A++ GT+ SL+G +++  YK
Sbjct: 102 LKYTTPSFVASMINTISPLTFIIAVGLRLEVVDVKKPRGMARVFGTVLSLIGALIMTLYK 161

Query: 61  GPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAW 120
           G  + SL+GAP ++    VH NW+KGSIL+VASCI WS +YI+QA  +KKYPA+LS++AW
Sbjct: 162 GHTIQSLRGAPFNVRGKLVHNNWIKGSILSVASCISWSLWYILQAIIVKKYPAQLSLTAW 221

Query: 121 MNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVF 180
           +NC+GAAQSA +T++VQ K  AW  TS ++L CI Y+G +     +F Q W  EQ+GPVF
Sbjct: 222 INCMGAAQSAAFTVLVQRKPTAWFITSTVELCCIFYAGVICGGFVIFGQFWTAEQKGPVF 281

Query: 181 VTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCIKNQKQSF 240
           V++FNPL T++VA+ AYF+ GE+LHTG +LG +IVIIGLY LLWGKE D       +QSF
Sbjct: 282 VSMFNPLGTILVAILAYFVFGEQLHTGSLLGVVIVIIGLYLLLWGKESDGD--YKSQQSF 339

Query: 241 PACDEQKKPDDHAFTLSETDI 261
           P   EQK+      T +E ++
Sbjct: 340 PTHVEQKEYRTQIKTSAEEEV 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357114030|ref|XP_003558804.1| PREDICTED: auxin-induced protein 5NG4-like [Brachypodium distachyon]

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 128/256 (50%), Positives = 182/256 (71%), Gaps = 5/256 (1%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           +KY  PTF+TA+ NT+  +TF IA+V R+EIVDV+SPRG+AK+ GT  S  GV  + FYK
Sbjct: 96  LKYTSPTFVTAMANTVASITFAIAIVLRMEIVDVKSPRGLAKVAGTAVSFAGVTTMTFYK 155

Query: 61  GPAVPSLKGAPIHL-GTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISA 119
           G A+ S   APIH+ G+N+VH +W+KGS+L VASC+ WS +YIMQA ++++YPA+LS++A
Sbjct: 156 GAAIASPWKAPIHIHGSNAVHGSWVKGSLLAVASCVCWSIWYIMQAGSVERYPAELSLTA 215

Query: 120 WMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPV 179
           WM  +G  QSA +T+++Q +   W    G++ WCIIYSG   S   +F QLWC E++GPV
Sbjct: 216 WMATVGGIQSAAFTVLLQHRKEDWLVGFGLNFWCIIYSGIACSGFAVFAQLWCTEKKGPV 275

Query: 180 FVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCIKNQKQS 239
           FVT+FNP++T++VA+ AYF+ GE L+ G I+GG +VI+G+Y LLWGK+ DQ    +  + 
Sbjct: 276 FVTMFNPVSTIMVAILAYFICGENLYVGSIIGGGVVILGMYMLLWGKDKDQEYNASSSKE 335

Query: 240 FPACD----EQKKPDD 251
               D    +Q K  D
Sbjct: 336 LQGSDLDWEKQAKMAD 351

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218192100|gb|EEC74527.1| hypothetical protein OsI_10035 [Oryza sativa Indica Group]

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 186/265 (70%), Gaps = 7/265 (2%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           + Y  PTF+T+VVNT+  +TF+IA+V R+EIVDVRS RG+AKI GT+ S  GV  +  YK
Sbjct: 103 LMYTSPTFVTSVVNTVASITFVIAIVVRMEIVDVRSIRGLAKIAGTVVSFAGVTTMTLYK 162

Query: 61  GPAVPSLKGAPIHL----GTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLS 116
           G A+ S   API +    G   VHE+WLKGS L VASCI WS +YI+QA +LK+YPA+LS
Sbjct: 163 GTAISSPWKAPISIHGGGGGGGVHESWLKGSFLAVASCICWSIWYILQASSLKRYPAQLS 222

Query: 117 ISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQR 176
           ++AWM  +G  QSAV+T  +Q K   W    G+  WCI+YSG   +   +F QLWC E++
Sbjct: 223 LTAWMCTVGGIQSAVFTAFMQHKPEDWRIGFGLKFWCIVYSGFACNGFTVFAQLWCTEKK 282

Query: 177 GPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCIKN- 235
           GPVFVT+FNPL+T++VA+ AYF+ GE L+ G I+GG++VI+GLY LLWGK+ DQ    N 
Sbjct: 283 GPVFVTMFNPLSTIMVAILAYFMFGENLYVGSIIGGVVVILGLYMLLWGKDKDQEYNANK 342

Query: 236 QKQSFPACDEQKKPDDHAFTLSETD 260
           Q++S   C++Q +  +  F+ ++ D
Sbjct: 343 QQESDLDCEKQARITE--FSAAQND 365

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108706201|gb|ABF93996.1| Integral membrane protein DUF6 containing protein, expressed [Oryza sativa Japonica Group] gi|215769112|dbj|BAH01341.1| unnamed protein product [Oryza sativa Japonica Group] gi|222624195|gb|EEE58327.1| hypothetical protein OsJ_09421 [Oryza sativa Japonica Group]

 Score =  273 bits (699), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 134/265 (50%), Positives = 186/265 (70%), Gaps = 7/265 (2%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           + Y  PTF+T+VVNT+  +TF+IA+V R+EIVDVRS RG+AK+ GT+ S  GV  +  YK
Sbjct: 103 LMYTSPTFVTSVVNTVASITFVIAIVVRMEIVDVRSIRGLAKVAGTVVSFAGVTTMTLYK 162

Query: 61  GPAVPSLKGAPIHL----GTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLS 116
           G A+ S   API +    G   VHE+WLKGS L VASCI WS +YI+QA +LK+YPA+LS
Sbjct: 163 GTAISSPWKAPISIHGGGGGGGVHESWLKGSFLAVASCICWSIWYILQASSLKRYPAQLS 222

Query: 117 ISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQR 176
           ++AWM  +G  QSAV+T  +Q K   W    G+  WCI+YSG   +   +F QLWC E++
Sbjct: 223 LTAWMCTVGGIQSAVFTAFMQHKPEDWRIGFGLKFWCIVYSGFACNGFTVFAQLWCTEKK 282

Query: 177 GPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHCIKN- 235
           GPVFVT+FNPL+T++VA+ AYF+ GE L+ G I+GG++VI+GLY LLWGK+ DQ    N 
Sbjct: 283 GPVFVTMFNPLSTIMVAILAYFMFGENLYVGSIIGGVVVILGLYMLLWGKDKDQEYNANK 342

Query: 236 QKQSFPACDEQKKPDDHAFTLSETD 260
           Q++S   C++Q +  +  F+ ++ D
Sbjct: 343 QQESDLDCEKQARITE--FSAAQND 365

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326522246|dbj|BAK07585.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 123/266 (46%), Positives = 185/266 (69%), Gaps = 9/266 (3%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           +KY  PTF+T++VNT+  +TF+IA+  R+EIVD+RS RG+AK+ GT  S  GV  +  YK
Sbjct: 102 LKYTSPTFVTSMVNTVASITFVIAIALRIEIVDLRSARGLAKVAGTAVSFAGVTTMTLYK 161

Query: 61  GPAVPSLKGAPIHL--GTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSIS 118
           G A+ S   AP+H+  G ++ H+ WLKGS+L VASC+ WS +YIMQA ++K+YPA+LS++
Sbjct: 162 GAAIASPWKAPVHIPGGGDAAHDGWLKGSLLAVASCVCWSVWYIMQATSVKRYPAELSLT 221

Query: 119 AWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGP 178
           AWM  +G  QS  +T+++Q +   W    G+  WCI+YSG   S   +F QLWC E++GP
Sbjct: 222 AWMATVGGVQSVAFTVLLQHEKQDWLIGFGLKFWCIVYSGIACSGFTVFAQLWCTEKKGP 281

Query: 179 VFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH----CIK 234
           VFVT+FNP++T++VA+ AYF+ GE L+ G I+GG++VI+GLY LLWGK+ DQ        
Sbjct: 282 VFVTMFNPVSTIMVAILAYFIFGENLYVGSIIGGVVVILGLYMLLWGKDKDQEYKAGAAS 341

Query: 235 NQKQSFP---ACDEQKKPDDHAFTLS 257
            ++Q+      C++Q++ ++    +S
Sbjct: 342 GEEQAGSPDLDCEKQQRQEEKMVGVS 367

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533791|ref|XP_003535442.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 126/232 (54%), Positives = 175/232 (75%), Gaps = 2/232 (0%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           +KY +PTF+ A++NTIP +TF+IAV FR E++D+ + RGIAK+LGTL SL G ++IA YK
Sbjct: 102 LKYTNPTFIVAMLNTIPTLTFVIAVAFRFELLDLXNSRGIAKVLGTLISLAGALIIALYK 161

Query: 61  GPAVPSLKGAPIHLGTNS--VHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSIS 118
           G  + +L    IH+   S  ++E+WLKGS+LTV SC+ WS +YIMQA TLK+YPA+LS+ 
Sbjct: 162 GNLMRNLWRPLIHIPGKSAAINESWLKGSLLTVLSCVTWSIWYIMQAATLKRYPAQLSLV 221

Query: 119 AWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGP 178
            WM+ +GAAQSAV+T+IV+   +AW+    IDLW  IY G V +CL  ++ LWC E++GP
Sbjct: 222 TWMSFVGAAQSAVFTVIVEHNRSAWTIGLNIDLWSTIYGGIVVACLITYVLLWCTEKKGP 281

Query: 179 VFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQ 230
           VFVT+FNPL+T++VA  AYF++GEKL+ G I+G   +IIG+Y LLWGK   +
Sbjct: 282 VFVTMFNPLSTILVAFVAYFILGEKLYLGSIIGAFTIIIGMYLLLWGKSEQE 333

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.984	0.671	0.341	1.1e-39
TAIR|locus:2132457	373	UMAMIT17 "Usually multiple aci	0.988	0.694	0.333	3.7e-39
UNIPROTKB|Q6J163	410	Q6J163 "Auxin-induced protein	0.958	0.612	0.316	4.4e-36
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.961	0.681	0.318	9.2e-36
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	0.980	0.671	0.310	1.5e-35
TAIR|locus:2049837	336	UMAMIT13 "Usually multiple aci	0.866	0.675	0.358	1.9e-35
TAIR|locus:2102629	377	UMAMIT10 "Usually multiple aci	0.916	0.636	0.308	1.7e-34
TAIR|locus:2058460	394	UMAMIT11 "Usually multiple aci	0.870	0.578	0.318	2.2e-34
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.877	0.614	0.336	7.4e-34
TAIR|locus:2031144	343	UMAMIT22 "Usually multiple aci	0.885	0.676	0.322	1.2e-33

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 93/272 (34%), Positives = 141/272 (51%)

Query:     1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
             M     T+ +A++N +P +TFIIA + R+E V++   R  AKI+GTL  L G +V+  YK
Sbjct:    98 MNMTSATYTSAIMNILPSVTFIIAWILRMEKVNIAEVRSKAKIIGTLVGLGGALVMTLYK 157

Query:    61 GPAVPSLKGAPI------HLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAK 114
             GP +P     P       H   +  H NW+ G++L +  C+ WS FY++Q+ T+K YPA 
Sbjct:   158 GPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLILLGCVAWSGFYVLQSITIKTYPAD 217

Query:   115 LSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIE 174
             LS+SA +   GA QS    ++V+   + W+      L+  +Y+G VSS +  ++Q   ++
Sbjct:   218 LSLSALICLAGAVQSFAVALVVERHPSGWAVGWDARLFAPLYTGIVSSGITYYVQGMVMK 277

Query:   175 QRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTXXXXXXXXXXXXXXXXXWGKEGDQHCI- 233
              RGPVFVT FNPL  ++VA+ A F++ E++H                  WGK  D     
Sbjct:   278 TRGPVFVTAFNPLCMILVALIASFILHEQIHFGCVIGGAVIAAGLYMVVWGKGKDYEVSG 337

Query:   234 -----KNQKQSFPACDEQKKPDDHAFTLSETD 260
                  KN  Q  P     K  DD+    S +D
Sbjct:   338 LDILEKNSLQELPITT--KSEDDNKLVSSISD 367

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2132457 UMAMIT17 "Usually multiple acids move in and out Transporters 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 90/270 (33%), Positives = 143/270 (52%)

Query:     1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
             MK    T+ +A VN +P +TFI+AV+FR+E V+++  R +AK++GT  ++ G MV+  YK
Sbjct:    96 MKATSATYSSAFVNALPAITFIMAVIFRIETVNLKKTRSLAKVIGTAITVGGAMVMTLYK 155

Query:    61 GPAVPSLKGA--PIH---LGTNS--VHENWLKGSILTVASCILWSSFYIMQAFTLKKYPA 113
             GPA+   K A   +H    GT+S    +NW+ G++  + S   W+ F+I+Q+FTLKKYPA
Sbjct:   156 GPAIELFKTAHSSLHGGSSGTSSETTDQNWVTGTLAVMGSITTWAGFFILQSFTLKKYPA 215

Query:   114 KLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCI 173
             +LS+  W+  +G   + + ++I+    +AW           +YSG V S +  +IQ   I
Sbjct:   216 ELSLVMWICAMGTVLNTIASLIMVRDVSAWKVGMDSGTLAAVYSGVVCSGMAYYIQSIVI 275

Query:   174 EQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTXXXXXXXXXXXXXXXXXWGKEGDQHCI 233
              +RGPVF T F+P+  +I A     ++ EK+H                  WGK  D+   
Sbjct:   276 RERGPVFTTSFSPMCMIITAFLGVLVLAEKIHLGSIIGAIFIVFGLYSVVWGKAKDEVIS 335

Query:   234 KNQK---QSFPACDEQKKPDDHAFTLSETD 260
               +K   Q  P  +   K +    T SE +
Sbjct:   336 VEEKIGMQELPITNTSTKVEGGGIT-SEVN 364

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q6J163 Q6J163 "Auxin-induced protein 5NG4" [Pinus taeda (taxid:3352)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 83/262 (31%), Positives = 139/262 (53%)

Query:     6 PTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAV- 64
             PTF +A+ N++P +TFI+A   RLE V +    G+AKI+GT+A + G  +I  YKGP + 
Sbjct:   109 PTFASAIQNSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPIT 168

Query:    65 ----PSLKGAPIHL----GTN--SVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAK 114
                 P+L+    +     G +  +  ENW  G I  + +C+ WS + ++QA  LK+YPA+
Sbjct:   169 HIWRPNLEVTASYFKAFQGNDLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPAR 228

Query:   115 LSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIE 174
             LS++++    G  Q  +     +     W   SG +L+ I+Y+G V+S +   +Q+WCI+
Sbjct:   229 LSVTSFTCFFGVIQFLIIAAFFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCID 288

Query:   175 QRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTXXXXXXXXXXXXXXXXXWGKEGDQHCIK 234
             + GPVFV ++ P+ T+ VA+ A  ++GE+ +                  WGK  ++    
Sbjct:   289 RGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKRLGL 348

Query:   235 NQKQSFPACDEQKKPDDHAFTL 256
              Q +S    + Q    D + TL
Sbjct:   349 LQAKSSMVPENQPDNMDQSATL 370

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005938 "cell cortex" evidence=IDA

GO:0006810 "transport" evidence=NAS

GO:0009734 "auxin mediated signaling pathway" evidence=IDA

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 83/261 (31%), Positives = 140/261 (53%)

Query:     1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
             +K    ++ +A  N +P +TFI+A++FRLE V+ R    +AK++GT+ ++ G M++  YK
Sbjct:    96 LKNTSASYTSAFTNALPAVTFILALIFRLETVNFRKVHSVAKVVGTVITVGGAMIMTLYK 155

Query:    61 GPAVPSLKGA--PIHLGTNSVH--ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLS 116
             GPA+  +K A    H G++S    ++W+ G+I  + S   W++F+I+Q++TLK YPA+LS
Sbjct:   156 GPAIEIVKAAHNSFHGGSSSTPTGQHWVLGTIAIMGSISTWAAFFILQSYTLKVYPAELS 215

Query:   117 ISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQR 176
             +   +  IG   +A+ ++I+    +AW           +YSG V S +  +IQ   I+QR
Sbjct:   216 LVTLICGIGTILNAIASLIMVRDPSAWKIGMDSGTLAAVYSGVVCSGIAYYIQSIVIKQR 275

Query:   177 GPVFVTIFNPLTTVIVAVAAYFLVGEKLHTXXXXXXXXXXXXXXXXXWGKEGDQ-----H 231
             GPVF T F+P+  +I A     ++ EK+H                  WGK  D+      
Sbjct:   276 GPVFTTSFSPMCMIITAFLGALVLAEKIHLGSIIGAVFIVLGLYSVVWGKSKDEVNPLDE 335

Query:   232 CIKNQKQSFPACDEQKKPDDH 252
              I  + Q  P  +  K+ + H
Sbjct:   336 KIVAKSQELPITNVVKQTNGH 356

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 82/264 (31%), Positives = 146/264 (55%)

Query:     3 YVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKG- 61
             Y  PTF +A+ N++P +TFI+A   RLE +D+    G+AK+LGTL S+ G  VI  Y+G 
Sbjct:   122 YATPTFASAMQNSVPAITFIMACALRLEHIDLVRKHGVAKVLGTLVSIGGATVITLYRGF 181

Query:    62 PAVP---SLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSIS 118
             P      +++   + +G+++ H   L G +  +  C+ W+ + ++QA  LK+YPAKL+++
Sbjct:   182 PIFDQGLNMQKEEV-VGSDNSHSLTL-GWLYLMGHCLSWAGWMVLQAPVLKQYPAKLTLT 239

Query:   119 AWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGP 178
             ++    G  Q  V  + V+     W   S  +L+ I+Y+G ++S L +++Q WCI + GP
Sbjct:   240 SFTCFFGLIQFLVIALFVETDLNNWIIVSWEELFTILYAGIIASGLVVYLQTWCIYKSGP 299

Query:   179 VFVTIFNPLTTVIVAVAAYFLVGEKLHTXXXXXXXXXXXXXXXXXWGKEGDQHCIKNQKQ 238
             VFV +F PL T++VA  A+ ++G++L++                 WGK  ++     + Q
Sbjct:   300 VFVAVFQPLQTLLVAAMAFLILGDQLYSGGIVGAVFIMLGLYLVLWGKNEERKLALEESQ 359

Query:   239 SFP-ACDEQKKPDDHAFTLSETDI 261
               P +  +      H  + SE+++
Sbjct:   360 QDPESLTKHLLEAQHKKSNSESEV 383

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2049837 UMAMIT13 "Usually multiple acids move in and out Transporters 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 84/234 (35%), Positives = 131/234 (55%)

Query:     1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
             MKY   TF  A+ NT+P +TFI+A++FRLE V  +S R  AK++GT+ ++ G+MV+   K
Sbjct:    73 MKYTTATFAIALYNTLPAVTFILALIFRLESVKFQSIRSAAKVVGTVTTVGGIMVMTLVK 132

Query:    61 GPAVPSL--KG--APIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLS 116
             GPA+     KG  A   +GT+ +H + +KG++L    C  ++ F I+QA TLK YPA+LS
Sbjct:   133 GPALDLFWTKGPSAQNTVGTD-IHSS-IKGAVLVTIGCFSYACFMILQAITLKTYPAELS 190

Query:   117 ISAWMNCIGAAQSAVYTIIVQP-KAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQ 175
             ++ W+  IG  +  V  ++++    + W+      L  I YSG V S L  +I    ++ 
Sbjct:   191 LATWICLIGTIEGVVVALVMEKGNPSVWAIGWDTKLLTITYSGIVCSALGYYIGGVVMKT 250

Query:   176 RGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTXXXXXXXXXXXXXXXXXWGKEGD 229
             RGPVFVT F PL  ++VA+ +  +  E+++                  WGK  D
Sbjct:   251 RGPVFVTAFKPLCMIVVAIMSSIIFDEQMYLGRALGATVICVGLYLVIWGKAKD 304

GO:0016020 "membrane" evidence=IEA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2102629 UMAMIT10 "Usually multiple acids move in and out Transporters 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 74/240 (30%), Positives = 133/240 (55%)

Query:     1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
             +K   PTF  AV N +P +TFII+++ R+E V++R  R  AK++GTL  +VG M++  +K
Sbjct:    96 LKLTSPTFAGAVTNIVPALTFIISIICRMEKVEMRKVRFQAKVVGTLVIVVGAMLMILFK 155

Query:    61 GPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAW 120
              P +  L+        +   E++LK ++  + +   W+SF+++QA TLK+Y + LS+S  
Sbjct:   156 IPLITFLRSHLTGHALSPAGEDYLKATVFLLIASFSWASFFVLQAATLKRYSSHLSLSTM 215

Query:   121 MNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVF 180
             +  +G  QS   T +++P  +AW+    ++L    Y+G +SS +  ++Q    +Q+  +F
Sbjct:   216 VCFMGTLQSTALTFVMEPNLSAWNIGFDMNLLASAYAGIMSSSIAYYVQGMMTKQKSVIF 275

Query:   181 VTIFNPLTTVIVAVAAYFLVGEKLHTXXXXXXXXXXXXXXXXXWGKEGDQHCIKNQKQSF 240
             VT FNPL  +I ++  + ++ + L+                  WGKEGD    +N ++ F
Sbjct:   276 VTAFNPLVVIIGSIIGFLILNQTLNLGGVLGMAILVVGVCTVLWGKEGDIDEEENIEEKF 335

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2058460 UMAMIT11 "Usually multiple acids move in and out Transporters 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 73/229 (31%), Positives = 135/229 (58%)

Query:     1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
             +K   PTF +AV N +P +T I+A +FR+E V++R  R + K++GTL ++VG +++ FYK
Sbjct:    96 LKLTSPTFSSAVSNIVPAITIILATLFRMEKVEMRKVRCLVKVMGTLVTVVGSILMIFYK 155

Query:    61 GPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAW 120
             GP +   + + +   ++    ++LK ++  + + + W+SF+++QA TLKKY A LS+S  
Sbjct:   156 GPFINFFR-SHLTAASSPPTADYLKAAVFLLLASLSWASFFVLQAATLKKYSAHLSMSTM 214

Query:   121 MNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVF 180
             +  +G  QS     +++   +A +    ++L    Y+G +SS +  ++Q   ++++GPVF
Sbjct:   215 VCFMGTLQSLALAFVMEHNPSALNIGFDMNLLASAYAGIMSSSIAYYVQGLMMQRKGPVF 274

Query:   181 VTIFNPLTTVIVAVAAYFLVGEKLHTXXXXXXXXXXXXXXXXXWGKEGD 229
             VT FNPL  VIV++ ++F++G+ ++                  WGK  D
Sbjct:   275 VTAFNPLIVVIVSIMSFFVLGQGIYLGGVIGVVVLMVGVYAVLWGKHVD 323

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 79/235 (33%), Positives = 126/235 (53%)

Query:     1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
             MKY   TF  A+ N +P   FI+A +FRLE V+V+     AKILGT+ ++ G M++   K
Sbjct:    93 MKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNVKKIHSQAKILGTIVTVGGAMLMTVVK 152

Query:    61 GPAVPSLKGAP--IHLGTNS--VHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLS 116
             GP +P     P  IH  +++  V ++  KG+ L    CI W+ F  +QA TLK YP +LS
Sbjct:   153 GPLIPLPWANPHDIHQDSSNTGVKQDLTKGASLIAIGCICWAGFINLQAITLKSYPVELS 212

Query:   117 ISAWMNCIGAAQSAVYTIIVQP-KAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQ 175
             ++A++  +G+ +S +  + ++    +AW+      L   +Y G + S +  ++Q   ++ 
Sbjct:   213 LTAYICFLGSIESTIVALFIERGNPSAWAIHLDSKLLAAVYGGVICSGIGYYVQGVIMKT 272

Query:   176 RGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTXXXXXXXXXXXXXXXXXWGKEGDQ 230
             RGPVFVT FNPL+ VIVA+    ++ E +                   WGK  D+
Sbjct:   273 RGPVFVTAFNPLSMVIVAILGSIILAEVMFLGRILGAIVIVLGLYSVLWGKSKDE 327

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2031144 UMAMIT22 "Usually multiple acids move in and out Transporters 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 76/236 (32%), Positives = 127/236 (53%)

Query:     7 TFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPA-VP 65
             TF  A  N IP +TF++A++FRLE V ++   G+AK+ G++  ++G +V AF KGP+ + 
Sbjct:    98 TFAAATTNAIPSITFVLALLFRLETVTLKKSHGVAKVTGSMVGMLGALVFAFVKGPSLIN 157

Query:    66 SLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCI- 124
                 + I  GT    +N +KGSI  +A+   W  + IMQ+  +K+YPAKL + A + C+ 
Sbjct:   158 HYNSSTIPNGTVPSTKNSVKGSITMLAANTCWCLWIIMQSKVMKEYPAKLRLVA-LQCLF 216

Query:   125 GAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIF 184
                QSAV+ + V    + W    G+ L  + Y G + + L  ++Q+W IE++GPVF  ++
Sbjct:   217 SCIQSAVWAVAVNRNPSVWKIEFGLPLLSMAYCGIMVTGLTYWLQVWAIEKKGPVFTALY 276

Query:   185 NPLTTVIVAVAAYFLVGEKLHTXXXXXXXXXXXXXXXXXWGKEGDQHCIK-NQKQS 239
              PL  ++  + + FL  E  +                  WGK  ++   +  +KQS
Sbjct:   277 TPLALILTCIVSSFLFKETFYLGSVGGAVLLVCGLYLGLWGKTKEEEIQRYGEKQS 332

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020214001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (368 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	3e-38
pfam00892	126	pfam00892, EamA, EamA-like transporter family	6e-08
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	2e-06

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  136 bits (344), Expect = 3e-38
 Identities = 74/248 (29%), Positives = 137/248 (55%), Gaps = 13/248 (5%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           ++Y +PT  +A+ N  P +TFI+A++FR+E V  +    +AK++GT+ SL+G +V+ FY 
Sbjct: 99  IEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH 158

Query: 61  GPAVPSLKGAPIHLG-------TNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPA 113
           GP V  +  +P +L         +S + +WL G  L     I  S  +I+QA  + +YPA
Sbjct: 159 GPRV-FVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA 217

Query: 114 KLSIS-AWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWC 172
             ++S  +  C+    S +  ++ +   + W     I L  I+    ++S   + I  W 
Sbjct: 218 AFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSVYYV-IHSWT 276

Query: 173 IEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHC 232
           +  +GP+++ IF PL+ +I  V     + + L+ GC++GG+++ +G Y+++WGK  ++  
Sbjct: 277 VRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEE-- 334

Query: 233 IKNQKQSF 240
            K+Q  SF
Sbjct: 335 -KDQLLSF 341

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 49.9 bits (120), Expect = 6e-08
 Identities = 21/130 (16%), Positives = 57/130 (43%), Gaps = 4/130 (3%)

Query: 95  ILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCI 154
           + W+ +++     L++    L+ +A+   I      +   +++   A  S      +  +
Sbjct: 1   LSWALYFVFSKKLLERISP-LTFTAYRFLIAGILLILLLFLLRKPFALLSLK---AILAL 56

Query: 155 IYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLI 214
           +Y G   + L   +  + ++       ++   L+ V   + +  L+GEKL    +LG ++
Sbjct: 57  LYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVL 116

Query: 215 VIIGLYSLLW 224
           +++G+  +L 
Sbjct: 117 ILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 40/226 (17%), Positives = 85/226 (37%), Gaps = 27/226 (11%)

Query: 1   MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 60
           +KY   +  + ++  +P  T ++AV+  L          + +ILG L +L GV++I    
Sbjct: 91  LKYTSASVASLIIGLLPLFTALLAVLLLL-----GERLSLLQILGILLALAGVLLILLGG 145

Query: 61  GPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAW 120
           G                      L G +L +A+ +LW+ +  +     +           
Sbjct: 146 G----------------GGGILSLLGLLLALAAALLWALYTALVKRLSR------LGPVT 183

Query: 121 MNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVF 180
           +  +     A+  +++   +   +         ++Y G  S+ L   +  + +   G   
Sbjct: 184 LALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASL 243

Query: 181 VTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK 226
           V + + L  V  A+    L+GE L    +LG  +V++G+       
Sbjct: 244 VALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRA 289

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
PLN00411	358	nodulin MtN21 family protein; Provisional	99.97
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.94
PRK11689	295	aromatic amino acid exporter; Provisional	99.93
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.93
PRK11272	292	putative DMT superfamily transporter inner membran	99.93
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.93
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.92
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.9
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.9
PRK15430	296	putative chloramphenical resistance permease RarD;	99.89
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.89
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.84
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.8
KOG2765	416	consensus Predicted membrane protein [Function unk	99.79
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.76
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.75
COG2510	140	Predicted membrane protein [Function unknown]	99.7
COG2962	293	RarD Predicted permeases [General function predict	99.7
KOG1580	337	consensus UDP-galactose transporter related protei	99.68
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.64
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.63
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.59
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.55
KOG2766	336	consensus Predicted membrane protein [Function unk	99.49
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.44
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.37
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.33
PRK15430	296	putative chloramphenical resistance permease RarD;	99.32
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.3
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.28
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.27
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.27
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.26
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.25
KOG1581	327	consensus UDP-galactose transporter related protei	99.15
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.11
PLN00411	358	nodulin MtN21 family protein; Provisional	99.1
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.06
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.05
PRK11272	292	putative DMT superfamily transporter inner membran	99.01
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.0
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.98
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.97
KOG1582	367	consensus UDP-galactose transporter related protei	98.96
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.96
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.95
PRK11689	295	aromatic amino acid exporter; Provisional	98.91
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.83
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.72
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.71
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.69
COG2962	293	RarD Predicted permeases [General function predict	98.65
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.57
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.54
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.51
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.43
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.32
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.22
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.21
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.19
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.18
PRK13499	345	rhamnose-proton symporter; Provisional	98.14
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.99
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.95
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.95
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.95
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.83
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.82
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.78
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.77
PRK13499	345	rhamnose-proton symporter; Provisional	97.67
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.62
PRK11431	105	multidrug efflux system protein; Provisional	97.6
COG2076	106	EmrE Membrane transporters of cations and cationic	97.57
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.53
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.51
COG2510	140	Predicted membrane protein [Function unknown]	97.4
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	97.16
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	97.11
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.98
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.73
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.65
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.58
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.41
KOG2765	416	consensus Predicted membrane protein [Function unk	95.98
COG2076	106	EmrE Membrane transporters of cations and cationic	95.85
PRK09541	110	emrE multidrug efflux protein; Reviewed	95.75
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	95.74
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.48
KOG1443	349	consensus Predicted integral membrane protein [Fun	95.44
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	95.39
PRK10650	109	multidrug efflux system protein MdtI; Provisional	95.37
PRK11431	105	multidrug efflux system protein; Provisional	95.02
KOG1580	337	consensus UDP-galactose transporter related protei	94.93
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	94.71
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	94.48
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	94.39
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	94.34
PRK02237	109	hypothetical protein; Provisional	93.39
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	93.17
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	92.99
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	92.32
KOG1581	327	consensus UDP-galactose transporter related protei	91.68
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	90.57
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	89.97
KOG3912	372	consensus Predicted integral membrane protein [Gen	89.38
KOG2766	336	consensus Predicted membrane protein [Function unk	89.09
KOG4831	125	consensus Unnamed protein [Function unknown]	88.63
COG1742	109	Uncharacterized conserved protein [Function unknow	88.49
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	87.76
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	87.36
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	86.84
PF08507	136	COPI_assoc: COPI associated protein; InterPro: IPR	86.84
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	84.68

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.97  E-value=2e-30  Score=226.01  Aligned_cols=230  Identities=29%  Similarity=0.646  Sum_probs=176.2

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCC--CC-C--ccc-
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLK--GA-P--IHL-   74 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~--~~-~--~~~-   74 (262)
                      ++|+++++++++.++.|+++++++++++.|+++.++|.++.|++|++++++|++++..++++......  +. +  ... 
T Consensus        99 l~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~  178 (358)
T PLN00411         99 IEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSP  178 (358)
T ss_pred             HhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccccccccccc
Confidence            48999999999999999999999999976666666666666799999999999888764343210000  00 0  000 


Q ss_pred             CCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhcc-CcccccccchhhHHH
Q 024838           75 GTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQP-KAAAWSTTSGIDLWC  153 (262)
Q Consensus        75 ~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~  153 (262)
                      +......+...|++++++++++|+.|.+++|+..+++++.....+++..++.+...+..+..++ +...|.......+..
T Consensus       179 ~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  258 (358)
T PLN00411        179 PLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLIT  258 (358)
T ss_pred             ccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHH
Confidence            0011123345699999999999999999999999998666677777777777777666665544 223332222233455


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838          154 IIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH  231 (262)
Q Consensus       154 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~  231 (262)
                      ++|.+++ +.++|.+|++++++.||++++++.+++|+++++++++++||++++.+++|+++++.|+++..++++|+.+
T Consensus       259 i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~  335 (358)
T PLN00411        259 IVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEK  335 (358)
T ss_pred             HHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            7777875 5789999999999999999999999999999999999999999999999999999999999876665544

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.94  E-value=5.1e-26  Score=195.19  Aligned_cols=204  Identities=18%  Similarity=0.242  Sum_probs=162.0

Q ss_pred             cc-cchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            2 KY-VHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         2 ~~-~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      +| .+++.++++.+++|+++.+++++++|||+++++      +++++++++|+.++..  +...              ..
T Consensus        81 ~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~~--~~~~--------------~~  138 (299)
T PRK11453         81 NFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLIE--DSLN--------------GQ  138 (299)
T ss_pred             HhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhcc--ccCC--------------Cc
Confidence            45 478999999999999999999999999999998      9999999999888863  2110              11


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--hhHHHHHHHHHHHHHHHHHHHHhccCc---ccccccchhhHHHHH
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPA--KLSISAWMNCIGAAQSAVYTIIVQPKA---AAWSTTSGIDLWCII  155 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  155 (262)
                      .....|+++++.++++|+.|.++.|+..++.++  ......+.+..+.+.........++..   ..+...+...|..++
T Consensus       139 ~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  218 (299)
T PRK11453        139 HVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLM  218 (299)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHH
Confidence            112469999999999999999999997766522  234445555555444443333333311   112223456799999


Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheeccc
Q 024838          156 YSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKE  227 (262)
Q Consensus       156 ~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~  227 (262)
                      |++++++.++|.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|++++++|+++..+.++
T Consensus       219 ~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        219 YLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            999999999999999999999999999999999999999999999999999999999999999999876654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.93  E-value=3.4e-25  Score=189.73  Aligned_cols=202  Identities=16%  Similarity=0.102  Sum_probs=153.7

Q ss_pred             ccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccch
Q 024838            3 YVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHEN   82 (262)
Q Consensus         3 ~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (262)
                      ++++++++++.+++|+++++++++++|||+++++      +.|++++++|++++.. +++.. +..    +..+  +...
T Consensus        88 ~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~------~~g~~l~~~Gv~li~~-~~~~~-~~~----~~~~--~~~~  153 (295)
T PRK11689         88 RRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLL------IPGLLLALAGVAWVLG-GDNGL-SLA----ELIN--NIAS  153 (295)
T ss_pred             cccchHHHHHHHHhHHHHHHHHHHHhcCCccHHH------HHHHHHHHHhHhheec-CCccc-hhh----hhhh--cccc
Confidence            4677888999999999999999999999999888      9999999999988863 11100 000    0000  0111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhh
Q 024838           83 WLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSS  162 (262)
Q Consensus        83 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~  162 (262)
                      ...|++++++++++||.|.++.||..++. ++.....   ..+.+.+.+.... ++.. . ...+...|..+++.++ ++
T Consensus       154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~~---~~~~~~l~~~~~~-~~~~-~-~~~~~~~~~~l~~~~~-~t  225 (295)
T PRK11689        154 NPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLFF---ILTALALWIKYFL-SPQP-A-MVFSLPAIIKLLLAAA-AM  225 (295)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHHH---HHHHHHHHHHHHH-hcCc-c-ccCCHHHHHHHHHHHH-HH
Confidence            24699999999999999999999987776 6654422   2333333333332 2211 1 1123456777778774 78


Q ss_pred             hHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838          163 CLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~  226 (262)
                      +++|.+|++++|+.++++++.+.+++|+++++++++++||++++.+++|+++++.|+++..+.+
T Consensus       226 ~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~  289 (295)
T PRK11689        226 GFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT  289 (295)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence            9999999999999999999999999999999999999999999999999999999998876544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.93  E-value=7.4e-25  Score=184.26  Aligned_cols=191  Identities=16%  Similarity=0.243  Sum_probs=163.1

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      ++|+++++++++.+++|+++++++++++|||+++++      +.|++++++|++++.. +++                 .
T Consensus        68 ~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~------~~gi~i~~~Gv~li~~-~~~-----------------~  123 (260)
T TIGR00950        68 VKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLV------LLAAVLGLAGAVLLLS-DGN-----------------L  123 (260)
T ss_pred             HHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhhcc-CCc-----------------c
Confidence            478999999999999999999999999999999888      9999999999988753 111                 1


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhh
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGA  159 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  159 (262)
                      +....|++++++++++|+.+.++.|+..++.+ ++.....+++..+.+.+.+.....++. ...   +...|..+++.++
T Consensus       124 ~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~---~~~~~~~~~~~~~  199 (260)
T TIGR00950       124 SINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPN-PQA---LSLQWGALLYLGL  199 (260)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC-CCc---chHHHHHHHHHHH
Confidence            12357999999999999999999999887762 244555577888888888887754332 111   3557888899999


Q ss_pred             hhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHH
Q 024838          160 VSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGL  219 (262)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~  219 (262)
                      +++.++|.+|++++++.++.+++.+.+++|+++.++++++++|++++.+++|+.+++.|+
T Consensus       200 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       200 IGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999986

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.93  E-value=1.1e-24  Score=186.24  Aligned_cols=197  Identities=14%  Similarity=0.145  Sum_probs=164.0

Q ss_pred             cccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccc
Q 024838            2 KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHE   81 (262)
Q Consensus         2 ~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (262)
                      ++++++.++++.++.|+++++++++ +|||+++++      +.|++++++|+.++.. ++. .                +
T Consensus        92 ~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~------~~~~~la~~Gv~ll~~-~~~-~----------------~  146 (292)
T PRK11272         92 QNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLE------WLGIAIGLAGIVLLNS-GGN-L----------------S  146 (292)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhH------HHHHHHHHHhHHHHhc-Ccc-c----------------c
Confidence            6789999999999999999999986 689999888      9999999999887743 111 0                1


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhh
Q 024838           82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVS  161 (262)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  161 (262)
                      ....|++++++++++||.|.+..|+..++  ++....++++..+++.+.++....+....  ...+...|..+++.++++
T Consensus       147 ~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~i~~  222 (292)
T PRK11272        147 GNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLT--ALPTLSGFLALGYLAVFG  222 (292)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCccc--ccCCHHHHHHHHHHHHHH
Confidence            12479999999999999999999986543  44556678888888877777654332211  112456788999999999


Q ss_pred             hhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheeccc
Q 024838          162 SCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKE  227 (262)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~  227 (262)
                      +.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++++.|+++..++++
T Consensus       223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999876554

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.93  E-value=3.4e-25  Score=190.44  Aligned_cols=203  Identities=14%  Similarity=0.133  Sum_probs=159.8

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      ++|+++++++++.+++|+++++++++++|||+++++      +.|++++++|+++...  ++                 .
T Consensus        86 l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~------~~~l~l~~~Gv~l~~~--~~-----------------~  140 (302)
T TIGR00817        86 LSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTL------WLSLLPIVGGVALASD--TE-----------------L  140 (302)
T ss_pred             HHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHhhhcC--Cc-----------------c
Confidence            479999999999999999999999999999999888      9999999999976531  11                 1


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhh--hcCChhHHHHHHHHHHHHHHHHHHHHhccCcc---cccc----cc-hhh
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLK--KYPAKLSISAWMNCIGAAQSAVYTIIVQPKAA---AWST----TS-GID  150 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~----~~-~~~  150 (262)
                      +....|++++++++++|+.|.++.||..+  +. ++.....+++..+.+.+.|+....++...   .+..    .. ...
T Consensus       141 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (302)
T TIGR00817       141 SFNWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKI  219 (302)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHH
Confidence            11246999999999999999999999887  66 89999999999999999998876543111   0100    00 011


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCc
Q 024838          151 LWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGD  229 (262)
Q Consensus       151 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~  229 (262)
                      +...++.++.+....+.+++.++++.++++.++..+++|+++++++++++||+++..+++|+++++.|++++++.|+++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~  298 (302)
T TIGR00817       220 YTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQK  298 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccC
Confidence            2112222322222233455689999999999999999999999999999999999999999999999999999765443

specificities overlap.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.92  E-value=8.3e-24  Score=181.13  Aligned_cols=212  Identities=16%  Similarity=0.179  Sum_probs=172.9

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      ++||+.+.++++.+++-+++++++++++|+|.++.+      ++|+++.++|+.++...|....          +.+++.
T Consensus       100 ~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~------~~gv~i~i~Gv~lv~~sD~~~~----------~~~~~~  163 (334)
T PF06027_consen  100 YQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFH------ILGVLICIAGVVLVVVSDVLSG----------SDSSSG  163 (334)
T ss_pred             hhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHH------HHHHHHHHhhhhheeeeccccc----------ccCCCC
Confidence            489999999999999999999999999988888887      9999999999888875322211          111134


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccC-cccccccchhhHHHHHHHhh
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPK-AAAWSTTSGIDLWCIIYSGA  159 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gi  159 (262)
                      .+...|++++++++++||.++++.++..|+. +......+..+++.++..+...+.|.+ .+.... +...+. ......
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w-~~~~~~-~~v~~~  240 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAILERSGIESIHW-TSQVIG-LLVGYA  240 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHheehhhhhccCC-ChhhHH-HHHHHH
Confidence            4567999999999999999999999999998 888889999999999998888777662 222222 122233 333234


Q ss_pred             hhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838          160 VSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH  231 (262)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~  231 (262)
                      ++...-|.+....++..+|+..++-..+..+++++++++++|+++++..++|.++++.|.+++...+++.++
T Consensus       241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~  312 (334)
T PF06027_consen  241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE  312 (334)
T ss_pred             HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence            466778888889999999999999999999999999999999999999999999999999999977665544

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.90  E-value=6.7e-23  Score=174.39  Aligned_cols=193  Identities=12%  Similarity=0.096  Sum_probs=146.6

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      ++|++++.++.+.+++|+++++++++++|||+++++      +.|+.++++|+.++..  .+..               .
T Consensus        84 ~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll~~--~~~~---------------~  140 (281)
T TIGR03340        84 YHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVLGL--SRFA---------------Q  140 (281)
T ss_pred             HhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHhc--cccc---------------c
Confidence            368899999999999999999999999999999998      9999999999988753  1110               1


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChh-H---HHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHH
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKL-S---ISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIY  156 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~-~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (262)
                       ....|+.++++++++|+.|.+..|+..++. ++. .   ...+.+...++...+.....+..  ... .....+..+++
T Consensus       141 -~~~~g~~~~l~aal~~a~~~i~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~  215 (281)
T TIGR03340       141 -HRRKAYAWALAAALGTAIYSLSDKAAALGV-PAFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PYARQILPSAT  215 (281)
T ss_pred             -cchhHHHHHHHHHHHHHHhhhhccccccch-hcccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hhHHHHHHHHH
Confidence             113577889999999999999988765444 322 1   22222222211111111111111  111 12334566778


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhh
Q 024838          157 SGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYS  221 (262)
Q Consensus       157 ~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l  221 (262)
                      .+.+++.++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+++++.|+++
T Consensus       216 ~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       216 LGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            88889999999999999999999999999999999999999999999999999999999999876

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.90  E-value=1.4e-22  Score=173.34  Aligned_cols=196  Identities=13%  Similarity=0.060  Sum_probs=152.2

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      ++|++++.++++..+.|+++++++.    ||.+  +      ..++.++++|++++.. .+...               .
T Consensus        92 l~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~------~~~~~i~~~Gv~li~~-~~~~~---------------~  143 (293)
T PRK10532         92 IQTVPLGIAVALEFTGPLAVALFSS----RRPV--D------FVWVVLAVLGLWFLLP-LGQDV---------------S  143 (293)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHhc----CChH--H------HHHHHHHHHHHheeee-cCCCc---------------c
Confidence            4789999999999999999988763    3322  2      4556778999887752 12110               1


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhh
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAV  160 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  160 (262)
                      +....|++++++++++|+.|.+..|+..++. ++... ++...++++.+.++....++. ..   .+...|..++++|++
T Consensus       144 ~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~~~~~l~lgv~  217 (293)
T PRK10532        144 HVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAGE-AL---WHWSILPLGLAVAIL  217 (293)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccCc-cc---CCHHHHHHHHHHHHH
Confidence            1124799999999999999999999987776 66554 455566666666665543221 11   123456667899999


Q ss_pred             hhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCcc
Q 024838          161 SSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQ  230 (262)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~  230 (262)
                      ++.++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|++++++|.+...+..+++.
T Consensus       218 ~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~  287 (293)
T PRK10532        218 STALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREP  287 (293)
T ss_pred             HHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999876654433

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.89  E-value=3.3e-22  Score=171.32  Aligned_cols=189  Identities=12%  Similarity=0.126  Sum_probs=140.0

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      ++|+++++++++.++.|+++++++++++|||+++++      +.|++++++|+.++....+                  +
T Consensus        94 ~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~~~~~------------------~  149 (296)
T PRK15430         94 VNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQLWTFG------------------S  149 (296)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHHHcC------------------C
Confidence            478999999999999999999999999999999998      9999999999988863111                  1


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhh-HHHHHHHh
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGID-LWCIIYSG  158 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g  158 (262)
                      .     ..++++++++||.|.+..|+..++.. +......+....+.+...+.   .......+. .++.. +..+.+.|
T Consensus       150 ~-----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~g  220 (296)
T PRK15430        150 L-----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMG-QNPMSLNLLLIAAG  220 (296)
T ss_pred             c-----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCccccc-CCcHHHHHHHHHHH
Confidence            0     14688899999999999888643221 12222333333333222111   111111111 12222 33344445


Q ss_pred             hhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838          159 AVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL  223 (262)
Q Consensus       159 i~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~  223 (262)
                      + .+.++|.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++++.|+.+..
T Consensus       221 ~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        221 I-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV  284 (296)
T ss_pred             H-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            4 678999999999999999999999999999999999999999999999999999988876654

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.89  E-value=2.9e-22  Score=175.17  Aligned_cols=199  Identities=16%  Similarity=0.173  Sum_probs=161.1

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      ++++++++++++..++|+++++++++++|||+++++      +.+++++++|+++...  ++                 .
T Consensus       135 l~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~------~l~l~l~v~Gv~l~~~--~~-----------------~  189 (350)
T PTZ00343        135 MGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYA------YLSLIPIVGGVALASV--KE-----------------L  189 (350)
T ss_pred             HhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHheec--cc-----------------c
Confidence            468999999999999999999999999999998888      9999999999988753  21                 1


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC------ChhHHHHHHHHHHHHHHHHHHHHhccC--ccccc----ccch
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP------AKLSISAWMNCIGAAQSAVYTIIVQPK--AAAWS----TTSG  148 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~----~~~~  148 (262)
                      +....|++++++++++|+.+.++.|+..++.+      ++.+...+....++++++|+..+.|..  ...+.    ....
T Consensus       190 ~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~  269 (350)
T PTZ00343        190 HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTN  269 (350)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccc
Confidence            11247999999999999999999999887641      455566677889999999988765431  11110    0011


Q ss_pred             hhHHHHHHHhhhhhhHHHHHHHH----HHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838          149 IDLWCIIYSGAVSSCLNLFIQLW----CIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW  224 (262)
Q Consensus       149 ~~~~~~~~~gi~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~  224 (262)
                      ..+..+++ .++.++++|.+|+.    +++++++...++..+++|+++++++++++||++++.+++|+++++.|++++++
T Consensus       270 ~~~~~~l~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~  348 (350)
T PTZ00343        270 YTKGIIIF-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL  348 (350)
T ss_pred             cchHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence            12233344 45567899999995    99999999999999999999999999999999999999999999999999876


Q ss_pred             c
Q 024838          225 G  225 (262)
Q Consensus       225 ~  225 (262)
                      -
T Consensus       349 ~  349 (350)
T PTZ00343        349 F  349 (350)
T ss_pred             c
Confidence            4

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.84  E-value=1.9e-19  Score=153.07  Aligned_cols=196  Identities=20%  Similarity=0.343  Sum_probs=156.0

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHH-HHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAV-VFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSV   79 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~-~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~   79 (262)
                      ++|++++.++++.++.|+++.++++ ++++||+++++      +.++++.+.|++++... +...              .
T Consensus        91 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~Gv~lv~~~-~~~~--------------~  149 (292)
T COG0697          91 LKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQ------ILGILLALAGVLLILLG-GGGG--------------G  149 (292)
T ss_pred             HhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHheecC-CCcc--------------h
Confidence            3689999999999999999999997 77799999988      99999999999888641 2111              0


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHH-HHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHh
Q 024838           80 HENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISA-WMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSG  158 (262)
Q Consensus        80 ~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (262)
                      .. ...|+.+.+.++++|+.+.+..|+.. +. ++..... +...  .............. .  .......|..+.+.|
T Consensus       150 ~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~g  221 (292)
T COG0697         150 IL-SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL--LALLLLLLFFLSGF-G--APILSRAWLLLLYLG  221 (292)
T ss_pred             hH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH--HHHHHHHHHHhccc-c--ccCCHHHHHHHHHHH
Confidence            11 46899999999999999999999877 44 5555554 3333  22222222211111 1  222345788899999


Q ss_pred             hhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheec
Q 024838          159 AVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWG  225 (262)
Q Consensus       159 i~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~  225 (262)
                      ++++++++.++++++++.++..++.+.+++|+++.++++++++|+++..+++|+++++.|+.+...+
T Consensus       222 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         222 VFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            9888899999999999999999999999999999999999999999999999999999999998865

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.80  E-value=1.2e-20  Score=152.16  Aligned_cols=210  Identities=18%  Similarity=0.186  Sum_probs=163.8

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      ++|.+.++|.+|...+|.|+.+++|+++||+.++.+      .++..+.+.|++++.  +.+...+.   +...+.+++-
T Consensus       118 ~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~e------aL~s~itl~GVVLIv--RPpFlFG~---~t~g~~~s~~  186 (346)
T KOG4510|consen  118 LMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFE------ALGSLITLLGVVLIV--RPPFLFGD---TTEGEDSSQV  186 (346)
T ss_pred             HhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHH------HHHHHHhhheEEEEe--cCCcccCC---Cccccccccc
Confidence            468899999999999999999999999999999888      999999999999886  45543211   1112222232


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCccccccc-chhhHHHHHHHhh
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTT-SGIDLWCIIYSGA  159 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gi  159 (262)
                      +....|...++.+++.-|.-+++.|+..|+. +..-...+...++.+..+..... .+   .+..+ ..++|+....+|+
T Consensus       187 ~~~~~gt~aai~s~lf~asvyIilR~iGk~~-h~~msvsyf~~i~lV~s~I~~~~-ig---~~~lP~cgkdr~l~~~lGv  261 (346)
T KOG4510|consen  187 EYDIPGTVAAISSVLFGASVYIILRYIGKNA-HAIMSVSYFSLITLVVSLIGCAS-IG---AVQLPHCGKDRWLFVNLGV  261 (346)
T ss_pred             cccCCchHHHHHhHhhhhhHHHHHHHhhccc-cEEEEehHHHHHHHHHHHHHHhh-cc---ceecCccccceEEEEEehh
Confidence            3345678888999999999999999988888 55544445445555544444331 12   23322 3568888889998


Q ss_pred             hhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheeccc
Q 024838          160 VSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKE  227 (262)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~  227 (262)
                       .+++++.+...++|+..+.++++..+...+++.+|.+++|++.|+++.|.|+++++.+.+....+|.
T Consensus       262 -fgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw  328 (346)
T KOG4510|consen  262 -FGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW  328 (346)
T ss_pred             -hhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence             4589999999999999999999999999999999999999999999999999999999887765554

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.79  E-value=1.1e-18  Score=147.08  Aligned_cols=211  Identities=14%  Similarity=0.261  Sum_probs=171.1

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      |.||+++...++..++.+|+.+++.++.+||++..+      ++++.+.++|++++...++..           .++...
T Consensus       180 La~TsVAS~TilSStSs~FtL~la~if~~e~ft~sK------llav~~si~GViiVt~~~s~~-----------~~~~~a  242 (416)
T KOG2765|consen  180 LAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSK------LLAVFVSIAGVIIVTMGDSKQ-----------NSDLPA  242 (416)
T ss_pred             hhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHH------HHHHHHhhccEEEEEeccccc-----------cccCCc
Confidence            578999999999999999999999999999999988      999999999998887532211           111134


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHH---HHHHHHHHHHHHHHHhcc-CcccccccchhhHHHHHH
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAW---MNCIGAAQSAVYTIIVQP-KAAAWSTTSGIDLWCIIY  156 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  156 (262)
                      .+...|+++++++|+.||.|.++.||...+......+..+   ..++..+++.|..++... ..+.++.++..+...++.
T Consensus       243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~  322 (416)
T KOG2765|consen  243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVF  322 (416)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeH
Confidence            4557899999999999999999999877666223333333   334444455544443222 446677777778888888


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccC
Q 024838          157 SGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEG  228 (262)
Q Consensus       157 ~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~  228 (262)
                      .+++.++++-++|.++.-..++..+++-+.++.+.+++.+.++-+.++++.+++|...+++|.+.+++....
T Consensus       323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~  394 (416)
T KOG2765|consen  323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN  394 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence            899999999999999999999999999999999999999999999999999999999999999998865543

>TIGR00688 rarD rarD protein

Probab=99.76  E-value=1.8e-17  Score=139.13  Aligned_cols=165  Identities=8%  Similarity=0.042  Sum_probs=120.6

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      ++|+++++++++.++.|+++++++++++|||+++++      +.+++++++|++++... +  .               +
T Consensus        91 ~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~~-~--~---------------~  146 (256)
T TIGR00688        91 VNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIVL-K--G---------------S  146 (256)
T ss_pred             HHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHH-c--C---------------C
Confidence            478999999999999999999999999999999998      99999999999887531 1  0               1


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhh
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAV  160 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  160 (262)
                      .     ..++++++++|+.|.+..|+..++  +....... .....+...+..+.... ..........+|..+++.|++
T Consensus       147 ~-----~~~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~  217 (256)
T TIGR00688       147 L-----PWEALVLAFSFTAYGLIRKALKNT--DLAGFCLE-TLSLMPVAIYYLLQTDF-ATVQQTNPFPIWLLLVLAGLI  217 (256)
T ss_pred             c-----hHHHHHHHHHHHHHHHHHhhcCCC--CcchHHHH-HHHHHHHHHHHHHHhcc-CcccccCchhHHHHHHHHHHH
Confidence            0     135788999999999999886543  32222211 12222222222221111 111111122478888888875


Q ss_pred             hhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHH
Q 024838          161 SSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFL  199 (262)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~  199 (262)
                       +.++|.++++++|+.++++++++.+++|+++.++++++
T Consensus       218 -t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       218 -TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence             88999999999999999999999999999999999874

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.75  E-value=4.6e-17  Score=139.95  Aligned_cols=213  Identities=17%  Similarity=0.212  Sum_probs=167.2

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      ++|.|.+.-.++..+.|+++++++++++|+|.+.++      +.++++..+|+.+....  +...+..       .+...
T Consensus        85 l~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~------~~~v~li~~Gv~~~~~~--~~~~~~~-------~~~~~  149 (303)
T PF08449_consen   85 LKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQ------YLSVLLITIGVAIFTLS--DSSSSSS-------SNSSS  149 (303)
T ss_pred             HHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHH------HHHHHHHHhhHheeeec--ccccccc-------ccccc
Confidence            478899999999999999999999999966666665      99999999999888752  2210000       00011


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHH--hccCcc--cccccchhhHHHHH
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTII--VQPKAA--AWSTTSGIDLWCII  155 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~  155 (262)
                      .+...|+++.+++.++.+...+.+++..++++ ++....++...++.+..++....  ......  .+....+..+..++
T Consensus       150 ~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~  229 (303)
T PF08449_consen  150 FSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLL  229 (303)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHH
Confidence            22234999999999999999999999998875 67899999999999988888776  222111  11122233444444


Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCc
Q 024838          156 YSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGD  229 (262)
Q Consensus       156 ~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~  229 (262)
                      ...+ ++.++..+.+...++.++...++...+..+++++++.+++++++++.+|+|.++++.|..++.+.|+|+
T Consensus       230 ~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  230 LFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            4443 667888888899999999999999999999999999999999999999999999999999998877654

; GO: 0055085 transmembrane transport

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.70  E-value=6e-16  Score=111.59  Aligned_cols=136  Identities=13%  Similarity=0.137  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHH
Q 024838           86 GSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLN  165 (262)
Q Consensus        86 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~  165 (262)
                      ..++++++++++++..++.|-..++. ||...++.+.++..+.+..+.+...+ .......+++.|..+...|+ +++++
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~-~~~~~~~~~k~~lflilSGl-a~gls   80 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGN-WQAGGEIGPKSWLFLILSGL-AGGLS   80 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCc-eecccccCcceehhhhHHHH-HHHHH
Confidence            57899999999999999999999988 99999999999998888888775543 22222236778999999995 88999


Q ss_pred             HHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838          166 LFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW  224 (262)
Q Consensus       166 ~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~  224 (262)
                      +.+|+++++...++++..+.-++|++++++++++++|+++..+|+|+.++++|.+++.+
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            99999999999999999999999999999999999999999999999999999988764

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.70  E-value=1.5e-15  Score=124.98  Aligned_cols=191  Identities=9%  Similarity=0.108  Sum_probs=154.5

Q ss_pred             ccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccch
Q 024838            3 YVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHEN   82 (262)
Q Consensus         3 ~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (262)
                      +...-++++=+++.|++.++++++|+|||+++-|      +++++++.+|+....+..|...                  
T Consensus        95 ~g~~leaSLGY~InPL~~VllG~lflkErls~~Q------~iAV~lA~~GV~~~~~~~g~lp------------------  150 (293)
T COG2962          95 NGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQ------WIAVGLAAAGVLIQTWLLGSLP------------------  150 (293)
T ss_pred             CCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHcCCCc------------------
Confidence            3456788999999999999999999999999988      9999999999988887433211                  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhh
Q 024838           83 WLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSS  162 (262)
Q Consensus        83 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~  162 (262)
                           ..++.-|++|+.|..+.|+ . +. |+.+....-+..-.+..+.+.+..+.+.......++..+..+...|. .+
T Consensus       151 -----wval~la~sf~~Ygl~RK~-~-~v-~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vT  221 (293)
T COG2962         151 -----WVALALALSFGLYGLLRKK-L-KV-DALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VT  221 (293)
T ss_pred             -----HHHHHHHHHHHHHHHHHHh-c-CC-chHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HH
Confidence                 3466678899999988555 2 23 66777777777777777777665555332122134556777778887 67


Q ss_pred             hHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838          163 CLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~  226 (262)
                      ++...++..+-++++-+..+.++|++|..-.+++++++||+++..+++..+++.+|+.++.+..
T Consensus       222 avpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~  285 (293)
T COG2962         222 AVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG  285 (293)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999987544

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.68  E-value=2.1e-15  Score=119.94  Aligned_cols=210  Identities=17%  Similarity=0.208  Sum_probs=168.6

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      +||.+=....+-..+-|+-++++++++.      +++++|.+...++++++|+.+... +....           .+..+
T Consensus       106 lq~vpYPTqVlgKScKPIPVMilGVl~~------~KsY~w~kY~cVL~IV~GValFmY-K~~Kv-----------~g~e~  167 (337)
T KOG1580|consen  106 LQYVPYPTQVLGKSCKPIPVMILGVLFA------HKSYHWRKYCCVLMIVVGVALFMY-KENKV-----------GGAED  167 (337)
T ss_pred             hcccCCcHHHhcccCCCcceeeeehhhh------cccccHHHHHHHHHHHHHHHHhhc-ccccc-----------CCCcc
Confidence            4566666667777899999999999998      666677779999999999998875 43222           11134


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhcc--CcccccccchhhHHHHHHH
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQP--KAAAWSTTSGIDLWCIIYS  157 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  157 (262)
                      .....|.++.+++-.+-+.....+.+..+.+. ....++++..+++.+.+..-.++...  ++.-+..-.+..|+-+..+
T Consensus       168 ~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~  247 (337)
T KOG1580|consen  168 KTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLL  247 (337)
T ss_pred             cccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHH
Confidence            55678999999999999999999998877763 67888999999999888877765433  1222222345667777788


Q ss_pred             hhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhh-heecccCc
Q 024838          158 GAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYS-LLWGKEGD  229 (262)
Q Consensus       158 gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l-~~~~~~~~  229 (262)
                      ++ ++.+++++.+.-+...||...+++....-.|+++.++++++.+++.+||+|..+++.|+.. +..+|+.+
T Consensus       248 ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~a~  319 (337)
T KOG1580|consen  248 AI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKKAP  319 (337)
T ss_pred             HH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCcCc
Confidence            86 8899999999999999999999999999999999999999999999999999999999887 44555433

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.64  E-value=6.8e-15  Score=118.27  Aligned_cols=193  Identities=13%  Similarity=0.028  Sum_probs=153.7

Q ss_pred             ccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccch
Q 024838            3 YVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHEN   82 (262)
Q Consensus         3 ~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (262)
                      ..+-+.+..+-.+-|+...+++---.      +.      ...+.+++.|+.++.. .++.               ....
T Consensus        94 riPlGiAVAiEF~GPL~vA~~~sRr~------~d------~vwvaLAvlGi~lL~p-~~~~---------------~~~l  145 (292)
T COG5006          94 RIPLGIAVAIEFTGPLAVALLSSRRL------RD------FVWVALAVLGIWLLLP-LGQS---------------VWSL  145 (292)
T ss_pred             hccchhhhhhhhccHHHHHHHhccch------hh------HHHHHHHHHHHHhhee-ccCC---------------cCcC
Confidence            34556777777888887776544221      44      7788899999888863 2322               2333


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhh
Q 024838           83 WLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSS  162 (262)
Q Consensus        83 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~  162 (262)
                      +..|..+++.++.+|+.|.+..||..+.. +....+..-+.++.++.+|+......    ....++.-...-+..+++++
T Consensus       146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm~vAaviv~Pig~~~ag----~~l~~p~ll~laLgvavlSS  220 (292)
T COG5006         146 DPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGMLVAALIVLPIGAAQAG----PALFSPSLLPLALGVAVLSS  220 (292)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHHHHHHHHHhhhhhhhcc----hhhcChHHHHHHHHHHHHhc
Confidence            46899999999999999999999988766 88888999999999999999884322    12224556667778899999


Q ss_pred             hHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccC
Q 024838          163 CLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEG  228 (262)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~  228 (262)
                      .+-|.+-..++++++....+.++.+||.++.+.+++++||.+|+.||.|..+++.+..=..+..+|
T Consensus       221 alPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~  286 (292)
T COG5006         221 ALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK  286 (292)
T ss_pred             ccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence            999999999999999999999999999999999999999999999999999999887755544333

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.63  E-value=8e-15  Score=125.17  Aligned_cols=199  Identities=16%  Similarity=0.159  Sum_probs=145.1

Q ss_pred             cccchhHHHHhhh-chHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            2 KYVHPTFMTAVVN-TIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         2 ~~~s~~~a~~i~~-~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      +|++.+.+..+.+ +.+++..+.+++++|||.++++  .+.-+.|+++.++|+.++...+++..           ...+.
T Consensus        81 ~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~--~~~~~~g~~l~l~G~~l~~~~~~~~~-----------~~~~~  147 (290)
T TIGR00776        81 RYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQ--TLLGLLALILIIIGVYLTSRSKDKSA-----------GIKSE  147 (290)
T ss_pred             HHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhHheEEecccccc-----------ccccc
Confidence            5778888888888 8899999999999988887653  11127889999999777753211100           00000


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHH---HHHHHHHHHHHHhccCcccccccchhhHHHHHHH
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNC---IGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYS  157 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (262)
                      .+...|++++++++++|+.|.+..|+.  ++ ++.+..+.++.   +++++......   +. ..+   .+..++.....
T Consensus       148 ~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~~---~~-~~~---~~~~~~~~~~~  217 (290)
T TIGR00776       148 FNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGHI---LA-KPL---KKYAILLNILP  217 (290)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHHh---cc-cch---HHHHHHHHHHH
Confidence            233579999999999999999999875  35 77777444444   33332222211   10 112   23333334448


Q ss_pred             hhhhhhHHHHHHHHHHh-hcCceeeeehhchHHHHHHHHHHHHhccccchhhH----hHHHHHHHHHhhhee
Q 024838          158 GAVSSCLNLFIQLWCIE-QRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCI----LGGLIVIIGLYSLLW  224 (262)
Q Consensus       158 gi~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~----~G~~li~~g~~l~~~  224 (262)
                      |++ ..+++.+|..+.+ +.+++.++.+...+|+.+.++++++++|+.++.++    +|+++++.|+.+...
T Consensus       218 Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       218 GLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            887 6999999999999 99999999999999999999999999999999999    999999999988654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.59  E-value=5.1e-15  Score=110.17  Aligned_cols=125  Identities=21%  Similarity=0.417  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHHh
Q 024838           95 ILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIE  174 (262)
Q Consensus        95 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~  174 (262)
                      ++||.+.+..|+..++. |+....++++..+.+ .++...+.....  ....+...+...++.+++++.+++.+++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            46899999999999998 999999999999998 666666554432  23334667888888998888999999999999


Q ss_pred             hcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838          175 QRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL  223 (262)
Q Consensus       175 ~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~  223 (262)
                      +.+++.++.+.+++|+++.++++++++|++++.+++|+.+++.|+++..
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.55  E-value=2.7e-15  Score=127.40  Aligned_cols=204  Identities=15%  Similarity=0.186  Sum_probs=162.0

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      ++|.+.++...+..++|++++++++++.+|+.+.+.      +..++....|+.+...  ++.                 
T Consensus       104 l~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~--~e~-----------------  158 (316)
T KOG1441|consen  104 LSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASV--TEL-----------------  158 (316)
T ss_pred             hhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeee--ccc-----------------
Confidence            478999999999999999999999999988888887      8999989999877754  221                 


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhh--hcC-ChhHHHHHHHHHHHHHHH-HHHHHhccCcc---cccccchhhHHH
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLK--KYP-AKLSISAWMNCIGAAQSA-VYTIIVQPKAA---AWSTTSGIDLWC  153 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~--~~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~---~~~~~~~~~~~~  153 (262)
                      .-...|.+.++++.+..+...++.|+..+  +.. ++++...++..++.+.++ |+....+++..   ... ........
T Consensus       159 ~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~-~~~~~~~~  237 (316)
T KOG1441|consen  159 SFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTA-PWFVTFLI  237 (316)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeecc-ccchhhHH
Confidence            11258999999999999999999999984  222 899999999999999999 87776655332   110 11112222


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838          154 IIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH  231 (262)
Q Consensus       154 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~  231 (262)
                      +.+.. ++..+-....+..+.+++|...++.+.+.-++.++.++++|+++.++.+..|+++.++|+++|.+.|.++++
T Consensus       238 ~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  238 LLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             HHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            22323 233344445558899999999999999999999999999999999999999999999999999988876654

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.49  E-value=3.4e-14  Score=114.38  Aligned_cols=205  Identities=16%  Similarity=0.185  Sum_probs=159.3

Q ss_pred             cccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccc
Q 024838            2 KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHE   81 (262)
Q Consensus         2 ~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (262)
                      |||+-..+.++.+-..+.+++++|+++|-|-++-+      +.|+++.++|++++..  +|..    .     +..+++.
T Consensus       100 QyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmk------i~gV~iCi~GvvmvV~--sDV~----a-----gd~aggs  162 (336)
T KOG2766|consen  100 QYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMK------ISGVVICIVGVVMVVF--SDVH----A-----GDRAGGS  162 (336)
T ss_pred             hhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhhe------eeeEEeEecceEEEEE--eeec----c-----ccccCCC
Confidence            79999999999999999999999999977766666      9999999999988865  3221    0     1111344


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhcc-CcccccccchhhHHHHHHH-hh
Q 024838           82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQP-KAAAWSTTSGIDLWCIIYS-GA  159 (262)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-gi  159 (262)
                      +...|++++++++-+||..++..+.+.|+. |.........++++++...- ++++. ......  .  +|....++ ..
T Consensus       163 np~~GD~lvi~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~--w--~~~i~~yl~f~  236 (336)
T KOG2766|consen  163 NPVKGDFLVIAGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQ-FIFERHHVSTLH--W--DSAIFLYLRFA  236 (336)
T ss_pred             CCccCcEEEEecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHH-HhhhccceeeEe--e--hHHHHHHHHHH
Confidence            556899999999999999999999999999 99999999999999999888 44444 211111  1  12222232 33


Q ss_pred             hhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838          160 VSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH  231 (262)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~  231 (262)
                      ++.++-|.+.-..+|.-+++..++-...+-.+++++  ..||-+.+|...+..+.+..|.+++..+++.++.
T Consensus       237 L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~~~e  306 (336)
T KOG2766|consen  237 LTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKDEEE  306 (336)
T ss_pred             HHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccccCcHh
Confidence            455566666667899999999999999999999998  6788889999999999999999999766554433

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.44  E-value=3.5e-12  Score=105.82  Aligned_cols=204  Identities=13%  Similarity=0.186  Sum_probs=143.1

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      ++|.+|+..+++..+-.+++++++++++|+|++++|      |.++++.++|+++.-.  ++......++....+.+...
T Consensus        38 l~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~lv~~--~~~~~~~~~~~~~~~~~~~~  109 (244)
T PF04142_consen   38 LSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVVLVQL--SSSQSSDNSSSSSVHHDASN  109 (244)
T ss_pred             HHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhh------HHHHHHHHHHHheeec--CCcccccccccccccccccc
Confidence            368899999999999999999999999999999888      9999999999888754  22221111111111111124


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccC-cccccccchhhHHHHHHHh
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPK-AAAWSTTSGIDLWCIIYSG  158 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g  158 (262)
                      .+...|.++.++++++-+...++.+|.+|+.. +....+....+.+.++.++...+.+.. ..+........+.  .+.-
T Consensus       110 ~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~--~~~~  187 (244)
T PF04142_consen  110 QNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWW--VWIV  187 (244)
T ss_pred             chhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchH--HHHH
Confidence            45678999999999999999999999998874 444555555666666666654443221 0100000111111  2222


Q ss_pred             hhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHH
Q 024838          159 AVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLI  214 (262)
Q Consensus       159 i~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~l  214 (262)
                      ++..+++=.+....+|+.+...=+....+..+++.++++++++.+++....+|+.+
T Consensus       188 i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~  243 (244)
T PF04142_consen  188 IFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL  243 (244)
T ss_pred             HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence            23334444566778899998888999999999999999999999999999999865

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.37  E-value=8.2e-12  Score=103.25  Aligned_cols=198  Identities=14%  Similarity=0.180  Sum_probs=151.2

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      ++|++.+..++....+++|+.+++.+|.-||+++.-      ..-+++..+|+.+..+ ++                  .
T Consensus       105 l~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L------~l~v~lI~~Glflft~-Ks------------------T  159 (349)
T KOG1443|consen  105 LEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWAL------VLIVLLIAVGLFLFTY-KS------------------T  159 (349)
T ss_pred             eeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHH------HHHHHHHhhheeEEEe-cc------------------c
Confidence            478889999999999999999999999999998775      5556666666666654 22                  1


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC----ChhHHHHHHHHHHHHHHHHHHHHhccCcc-----cccccchhh-
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP----AKLSISAWMNCIGAAQSAVYTIIVQPKAA-----AWSTTSGID-  150 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~-  150 (262)
                      +-...|.++..+++++-++-..+.++.+++.|    +|.+..+...-+..+.++|..+.+|+...     .+...++.. 
T Consensus       160 qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~  239 (349)
T KOG1443|consen  160 QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLI  239 (349)
T ss_pred             ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHH
Confidence            22357999999999999999999988888874    68899999999999999999998887332     222222221 


Q ss_pred             HHHHHHHhhhhhhHHHH---HHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838          151 LWCIIYSGAVSSCLNLF---IQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW  224 (262)
Q Consensus       151 ~~~~~~~gi~~~~~~~~---~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~  224 (262)
                      +..+...++ ++.+++.   +-+..+.+++....++.....-+-+.+++..+.++.++...|.|..++..|+.+..+
T Consensus       240 ~rv~g~i~l-~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~  315 (349)
T KOG1443|consen  240 LRVIGLISL-GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN  315 (349)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence            222222221 3333333   333567888999999999999999999999999999999999999999999999843

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=8e-11  Score=98.46  Aligned_cols=205  Identities=14%  Similarity=0.176  Sum_probs=163.6

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      +||.+....+++.+.+|+++++....+++      ++|++..+.++.+.++|......  .+..                
T Consensus        98 lk~lnVpm~tv~kn~tii~~ai~E~lf~~------~~~~~~v~~Sv~~m~~~s~~~~~--~d~s----------------  153 (314)
T KOG1444|consen   98 LKYLNVPMFTVFKNLTIILTAIGEVLFFG------KRPSNKVWASVFAMIIGSVAAAF--TDLS----------------  153 (314)
T ss_pred             ccccCchHHHHHhhchHHHHHHhHHhhcC------cCchhhHHHHHHHHHHHHHhhcc--ccce----------------
Confidence            68999999999999999999999999985      56666669999988888766653  2211                


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCc---ccc-cccchhhHHHHH
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKA---AAW-STTSGIDLWCII  155 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~  155 (262)
                      . ...|+.+++..++.-+.+.+..|+..+... +...+..+..+.+...+.....+.++..   ... ...+...+..+.
T Consensus       154 f-~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~  232 (314)
T KOG1444|consen  154 F-NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVML  232 (314)
T ss_pred             e-cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHH
Confidence            1 124899999999999999999998776552 5778899999999998888887665411   011 011234567777


Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838          156 YSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH  231 (262)
Q Consensus       156 ~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~  231 (262)
                      ..++++.++.| +-.++.+..+++..++........+.+.+.++++++.++...+|..+-++|..++++.+.++++
T Consensus       233 lScv~gf~isy-~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~  307 (314)
T KOG1444|consen  233 LSCVMGFGISY-TSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK  307 (314)
T ss_pred             HHHHHHHHHHH-HHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence            77877767777 5559999999999999999999999999999999999999999999999999999988766654

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.32  E-value=2.7e-11  Score=103.89  Aligned_cols=138  Identities=13%  Similarity=0.136  Sum_probs=111.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCccccc--ccchhhHHHHHHHhh
Q 024838           82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWS--TTSGIDLWCIIYSGA  159 (262)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~gi  159 (262)
                      +...|+++++++++.|+...+..|.. .+. ++....++++.++.+.+.++.....+ .....  ..+...+ .....+.
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~   80 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKI-FMLAVSA   80 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHH-HHHHHHH
Confidence            44689999999999999999999774 566 89999999999998877776654321 11110  0012223 2233555


Q ss_pred             hhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838          160 VSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL  223 (262)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~  223 (262)
                      +..+..+.++++++++.+++.++++.++.|+++.++++++++|+++..+++|+++.+.|+.+..
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            6777889999999999999999999999999999999999999999999999999999988765

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.30  E-value=3.2e-10  Score=96.25  Aligned_cols=209  Identities=12%  Similarity=0.112  Sum_probs=144.6

Q ss_pred             cccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccc
Q 024838            2 KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHE   81 (262)
Q Consensus         2 ~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (262)
                      .|.+++..++...+-.+.|+++.++++++|++++|      |.++++.++|+.++-. +.+..     .  ...+.....
T Consensus       114 ~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~-~~~~~-----~--~a~~~~~~~  179 (345)
T KOG2234|consen  114 SNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQL-PSLSP-----T--GAKSESSAQ  179 (345)
T ss_pred             hcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhc-cCCCC-----C--CccCCCccc
Confidence            46788999999999999999999999999999888      9999999999988842 11111     0  000012345


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCh-hHHHHHHHHHHHHHHHHHHHHhccCccccc-c---cchhhHHHHHH
Q 024838           82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAK-LSISAWMNCIGAAQSAVYTIIVQPKAAAWS-T---TSGIDLWCIIY  156 (262)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~  156 (262)
                      +...|....+.+|+.-+...++.+|.+|....+ .-.+--..+++.+..+...+..+.+.-.|. .   .+...|..++.
T Consensus       180 n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~  259 (345)
T KOG2234|consen  180 NPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLL  259 (345)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHH
Confidence            667899999999999999999999999876433 333333444455544444443332111111 1   11223333333


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCc
Q 024838          157 SGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGD  229 (262)
Q Consensus       157 ~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~  229 (262)
                      .+     .+=.+....+++.+-..=+....+..+++.+.++.+++-++|....+|..+++.++.++...+.++
T Consensus       260 ~a-----~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  260 NA-----VGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             Hh-----ccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            33     333444555666666555666678899999999999999999999999999999999999544433

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.28  E-value=7.7e-11  Score=91.01  Aligned_cols=138  Identities=16%  Similarity=0.223  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhc------CChhHHHHHHHHHHHHHHHHHHHHhccCcccccc--------c-chhh
Q 024838           86 GSILTVASCILWSSFYIMQAFTLKKY------PAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWST--------T-SGID  150 (262)
Q Consensus        86 G~~l~l~a~~~~a~~~v~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~-~~~~  150 (262)
                      |.++++++.++.+++.++.|+..++.      .++..+..+....+.+.+++..++.|+.......        . ++..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            67899999999999999999988772      2899999999999999999999887763211110        0 2244


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838          151 LWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW  224 (262)
Q Consensus       151 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~  224 (262)
                      +..++..|++. .+.....+..+++.+|...++...+..+..+++++++++|+++..+++|.++.+.|.++|+|
T Consensus        81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            55555666544 45555777999999999999999999999999999999999999999999999999999875

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00688 rarD rarD protein

Probab=99.27  E-value=6.7e-11  Score=99.31  Aligned_cols=136  Identities=13%  Similarity=0.234  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCc---ccccccchhh-HHHHHHHhhh
Q 024838           85 KGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKA---AAWSTTSGID-LWCIIYSGAV  160 (262)
Q Consensus        85 ~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~gi~  160 (262)
                      .|.+++++++++|+...+..|. ..+. ++....+++++++.+.+.++.....+..   +.++...... +..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            3789999999999999999998 4557 9999999999999888777665432210   1111111222 3345555553


Q ss_pred             hhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838          161 SSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL  223 (262)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~  223 (262)
                       ..+++.+++.+++++++..++.+.++.|+++.++++++++|+++.++++|.++.+.|+.+..
T Consensus        80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence             67889999999999999999999999999999999999999999999999999999988764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.27  E-value=1.3e-10  Score=94.94  Aligned_cols=202  Identities=13%  Similarity=0.106  Sum_probs=142.2

Q ss_pred             HhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccchhhHHHHHH
Q 024838           11 AVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILT   90 (262)
Q Consensus        11 ~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~   90 (262)
                      ++.+-+++.+++++|++.      ++|++..|+.++.+..+|+++......+...+..+..++++..+....+.+|+.+.
T Consensus        96 IfRsgsll~nM~~g~il~------~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL  169 (330)
T KOG1583|consen   96 IFRSGSLLANMILGWILL------GKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALL  169 (330)
T ss_pred             EEecCcHHHHHHHHHHhc------cceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHH
Confidence            345568899999999998      44555555999999999998877643333323233333333334456677899999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHH-hc-----cCccccccc-----chhhHHHHHHHh
Q 024838           91 VASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTII-VQ-----PKAAAWSTT-----SGIDLWCIIYSG  158 (262)
Q Consensus        91 l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~-----~~~~~~~~~-----~~~~~~~~~~~g  158 (262)
                      ..+-+.-|.-.+.++...+++. ++-...++..+++....+...-- ..     ...+.+..+     -|..|..++.  
T Consensus       170 ~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~--  247 (330)
T KOG1583|consen  170 VFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLF--  247 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHH--
Confidence            9999999999999998888874 78899999999887665543210 00     011111111     1233443333  


Q ss_pred             hhhhhHHHHHHHHH----HhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838          159 AVSSCLNLFIQLWC----IEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL  223 (262)
Q Consensus       159 i~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~  223 (262)
                         ..+.+....++    -.+.++..+++...+.-.+..+++.+.|+++++++-|+|+.+++.|.+++.
T Consensus       248 ---n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa  313 (330)
T KOG1583|consen  248 ---NVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA  313 (330)
T ss_pred             ---HHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence               33444444444    455667888999999999999999999999999999999999999988875

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.26  E-value=1e-11  Score=98.38  Aligned_cols=212  Identities=13%  Similarity=0.175  Sum_probs=165.6

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      |||.+....+++.+++.+..+....+++|.|++.-+      +.+.++.+..-++-.+  +|..          ...-..
T Consensus        89 LqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~------l~SFilMvlSS~va~w--~D~q----------~~~~~~  150 (309)
T COG5070          89 LQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLE------LLSFILMVLSSVVATW--GDQQ----------ASAFKA  150 (309)
T ss_pred             eeeeeeeHHHHhccceeehhHhhHHHHhcCccchhh------HHHHHHHHHHHHHhcc--chhh----------HHHHHh
Confidence            689999999999999999999999999999998888      8888777766655554  3221          000012


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCccc-ccc-cchhhHHHHHHH
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKAAA-WST-TSGIDLWCIIYS  157 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~  157 (262)
                      .....|++|+...|+.-+.+....|+..+-.- .....+++...++..+++.+.+++|+..+. ... .+.....+++..
T Consensus       151 ~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~IS  230 (309)
T COG5070         151 QILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFIS  230 (309)
T ss_pred             cccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHH
Confidence            23457999999999999999999887654431 577889999999999999999988763222 111 123345567777


Q ss_pred             hhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838          158 GAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH  231 (262)
Q Consensus       158 gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~  231 (262)
                      |+.+.+++| |-.|++|..+.+..+++..+.-.-..+.|.++++|+.+...+....+-..+..++.+.+.++++
T Consensus       231 gl~svgiSy-~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q  303 (309)
T COG5070         231 GLCSVGISY-CSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ  303 (309)
T ss_pred             HHHHhhhhh-ccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            775545554 8889999999999999999999999999999999999999999999988888888877765444

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.25  E-value=1.9e-10  Score=97.91  Aligned_cols=133  Identities=20%  Similarity=0.256  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHH
Q 024838           87 SILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNL  166 (262)
Q Consensus        87 ~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~  166 (262)
                      .++.+.++++|+...+..|+..++. ++.  ..+....+.+...++...... ...++... ..+......+.+.....+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~-~~~--~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~   77 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKE-PDF--LWWALLAHSVLLTPYGLWYLA-QVGWSRLP-ATFWLLLAISAVANMVYF   77 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCch-hHH--HHHHHHHHHHHHHHHHHHhcc-cCCCCCcc-hhhHHHHHHHHHHHHHHH
Confidence            4678999999999999999877765 443  355556666666666553211 12233222 334444444555778889


Q ss_pred             HHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838          167 FIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW  224 (262)
Q Consensus       167 ~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~  224 (262)
                      .++++++++.+++.++++.+.+|+++.++++++++|+++.++++|.++++.|+++...
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999988764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.15  E-value=3e-10  Score=94.11  Aligned_cols=211  Identities=17%  Similarity=0.179  Sum_probs=161.3

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      |+|.|=..-.+-.++-.+-+++...++.|.|.+..+      .....+.-.|+.+....  +..        +..+++..
T Consensus       104 LKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~e------Yl~~~LIs~GvsiF~l~--~~s--------~s~~~~g~  167 (327)
T KOG1581|consen  104 LKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFE------YLVAFLISLGVSIFSLF--PNS--------DSSSKSGR  167 (327)
T ss_pred             HHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHH------HHHHHHHHhheeeEEEe--cCC--------CCccccCC
Confidence            355555555666677778889999999866666666      88888888888776642  211        01222344


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCcc--cccccchhhHHHHHHH
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKAA--AWSTTSGIDLWCIIYS  157 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  157 (262)
                      ++...|+.++...-.+-+..+..+.++.+++. ++..++....+++.+..+...+......+  .+..-.+..+.-++..
T Consensus       168 ~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~  247 (327)
T KOG1581|consen  168 ENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLY  247 (327)
T ss_pred             CCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHH
Confidence            56678999999999999999999999988775 78999999999999988888553322111  1111234445555555


Q ss_pred             hhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccC
Q 024838          158 GAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEG  228 (262)
Q Consensus       158 gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~  228 (262)
                      .. ++++++.+.+.-+++-|+...+.++.+.-.++++++.+.++.+++..||+|..+++.|+.+-.+.+++
T Consensus       248 s~-~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  248 ST-CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             HH-hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            54 67899999999999999999999999999999999999999999999999999999999996655554

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.11  E-value=1.7e-09  Score=80.76  Aligned_cols=122  Identities=17%  Similarity=0.149  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhH
Q 024838           85 KGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCL  164 (262)
Q Consensus        85 ~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~  164 (262)
                      .|+++.+.+.++-+...++.|+..++.+ .......  ..    ...... .             +....++.|+++.++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~--~~----~~~~~~-~-------------~p~~~i~lgl~~~~l   60 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD--FI----AALLAF-G-------------LALRAVLLGLAGYAL   60 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH--HH----HHHHHH-h-------------ccHHHHHHHHHHHHH
Confidence            3678899999999999999999888763 2221111  00    000001 0             112246778889999


Q ss_pred             HHHHHHHHHhhcCceeeeehhchHHHHHHHHHHH--HhccccchhhHhHHHHHHHHHhhheeccc
Q 024838          165 NLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYF--LVGEKLHTGCILGGLIVIIGLYSLLWGKE  227 (262)
Q Consensus       165 ~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~--~~~e~~~~~~~~G~~li~~g~~l~~~~~~  227 (262)
                      ++.+|.+++++.+.+.+..+....+++..+.++.  +++|++++.+++|.+++++|+++..++++
T Consensus        61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            9999999999999999999999998888888885  89999999999999999999999886544

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.10  E-value=1.5e-09  Score=95.06  Aligned_cols=139  Identities=11%  Similarity=0.075  Sum_probs=115.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhh
Q 024838           84 LKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSC  163 (262)
Q Consensus        84 ~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~  163 (262)
                      ..-++.+++.=++|+.+.++.|..++..-++....++++.+++++++++....++. ..++..+...|..+..+|++. .
T Consensus        12 ~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~-~~~~~~~~~~~~~l~l~g~~g-~   89 (358)
T PLN00411         12 AVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRS-RSLPPLSVSILSKIGLLGFLG-S   89 (358)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHh-cccCcchHHHHHHHHHHHHHH-H
Confidence            35678888889999999999999998776999999999999999999988755431 111111234566777777765 5


Q ss_pred             HHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHH------hccccchhhHhHHHHHHHHHhhhee
Q 024838          164 LNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFL------VGEKLHTGCILGGLIVIIGLYSLLW  224 (262)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~------~~e~~~~~~~~G~~li~~g~~l~~~  224 (262)
                      +.+.+++.++++++++.++++.++.|+++.++++++      ++|+++..+++|.++.++|+.+...
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            666789999999999999999999999999999999      6999999999999999999888664

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.06  E-value=8.9e-10  Score=90.28  Aligned_cols=205  Identities=15%  Similarity=0.148  Sum_probs=149.0

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      |.+|+++.-+++....-+|+.+++.-+++.+++.++      |+|+....+|++++..  .|..    ...++.   ...
T Consensus       107 L~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~q------Wl~i~fv~lGlviVg~--~d~~----~~~~p~---~d~  171 (372)
T KOG3912|consen  107 LNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQ------WLGILFVSLGLVIVGS--LDVH----LVTDPY---TDY  171 (372)
T ss_pred             HHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhh------HHHHHHHHhhhheeee--eecc----cccCCc---ccc
Confidence            468999999999999999999999999999999999      9999999999887753  2111    000000   012


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhc----c-C----ccc-ccc----
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQ----P-K----AAA-WST----  145 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~----~-~----~~~-~~~----  145 (262)
                      .+...|+++.+++=+.-|...++-+|.+++.. +|.....|...++.+++...+...-    + .    .+. +..    
T Consensus       172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~  251 (372)
T KOG3912|consen  172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDA  251 (372)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHH
Confidence            44568999999999999999999988888774 7899999999998666555544321    1 1    000 110    


Q ss_pred             ---cchhhHHHHHHHhhhhhhHHHHHHH----HHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHH
Q 024838          146 ---TSGIDLWCIIYSGAVSSCLNLFIQL----WCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIG  218 (262)
Q Consensus       146 ---~~~~~~~~~~~~gi~~~~~~~~~~~----~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g  218 (262)
                         .....-+.+...|   ...+..++|    .--+..+++.=.++-.+...+..+++..+..|.++..|+.|.++.+.|
T Consensus       252 ~~~~~e~p~l~val~~---~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~G  328 (372)
T KOG3912|consen  252 FAALQESPSLAVALIG---FTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMG  328 (372)
T ss_pred             HHHhcCCchhHHHHhh---hhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0001112222222   233333444    335667778888888999999999999999999999999999999999


Q ss_pred             Hhhhe
Q 024838          219 LYSLL  223 (262)
Q Consensus       219 ~~l~~  223 (262)
                      +++++
T Consensus       329 i~lY~  333 (372)
T KOG3912|consen  329 IILYN  333 (372)
T ss_pred             HHHHH
Confidence            99986

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=8.5e-11  Score=95.87  Aligned_cols=209  Identities=14%  Similarity=0.091  Sum_probs=157.2

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      |+|.+.++..+=..+..+|+.+++++++|+|-+...      ..++.+.+.| ..+.. |.+..              ++
T Consensus       123 L~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~------~~~C~lIi~G-F~lGv-dqE~~--------------~~  180 (347)
T KOG1442|consen  123 LKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFA------LGCCLLIILG-FGLGV-DQEGS--------------TG  180 (347)
T ss_pred             hhhcceEEEEeccchhhhHHHHhHHhhccccccccc------ceeehhheeh-heecc-ccccc--------------cC
Confidence            467777777777788999999999999999988776      6666666666 33322 22211              22


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCcc--cccc-cchhhHHHHHH
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKAA--AWST-TSGIDLWCIIY  156 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~  156 (262)
                      .-...|.++.+.+.++-|+..+..|+...... ....+.+++...+.+..+|...+...-..  .++. +....|+.+..
T Consensus       181 ~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtL  260 (347)
T KOG1442|consen  181 TLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTL  260 (347)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHH
Confidence            23347999999999999999999987665542 46788999999999999999886543111  1111 23456777777


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCcccc
Q 024838          157 SGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQHC  232 (262)
Q Consensus       157 ~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~~  232 (262)
                      .|+++..++|.. .+=+|..+|..-++-..-.-..-.+++..+++|.-+...|-|-.+++.|..++++.|..+.++
T Consensus       261 sglfgF~mgyvT-g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~  335 (347)
T KOG1442|consen  261 SGLFGFAMGYVT-GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK  335 (347)
T ss_pred             HHHHHHHhhhee-eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence            777666666533 355788888888888888888899999999999999999999999999999999887666553

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.01  E-value=7.6e-09  Score=88.58  Aligned_cols=133  Identities=11%  Similarity=0.033  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhH
Q 024838           85 KGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCL  164 (262)
Q Consensus        85 ~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~  164 (262)
                      .-.+..++..+.|+...+..|...... +|....++++.+++++++++......+   .  ...+++......|++....
T Consensus         8 ~~~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~---~--~~~~~~~~~~~~g~~~~~~   81 (292)
T PRK11272          8 PLFGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHP---L--PTLRQWLNAALIGLLLLAV   81 (292)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCC---C--CcHHHHHHHHHHHHHHHHH
Confidence            345678888999999999999888777 999999999999999988876643221   1  1244566667777766666


Q ss_pred             HHHHHHHHH-hhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838          165 NLFIQLWCI-EQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW  224 (262)
Q Consensus       165 ~~~~~~~~~-~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~  224 (262)
                      .+.+++.+. ++.+++.++++.++.|+++.+++++ ++|+++..+++|..+.+.|+.+...
T Consensus        82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~  141 (292)
T PRK11272         82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS  141 (292)
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence            778888888 9999999999999999999999986 7999999999999999999988764

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.00  E-value=4.7e-09  Score=88.09  Aligned_cols=119  Identities=10%  Similarity=0.010  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHHhhc
Q 024838           97 WSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQR  176 (262)
Q Consensus        97 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  176 (262)
                      |+...+..|...+...++....++++..+.+.+.+.....         .+..++......+.++..+.+.+++.++++.
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4556677787776655888888888888888777654421         1344666777778778889999999999999


Q ss_pred             CceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838          177 GPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW  224 (262)
Q Consensus       177 ~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~  224 (262)
                      +++.++++..++|+++.+++.++++|+++..+++|+.+.+.|+.+...
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            999999999999999999999999999999999999999999988763

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.98  E-value=3.8e-09  Score=82.45  Aligned_cols=201  Identities=15%  Similarity=0.197  Sum_probs=143.3

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCccc
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVH   80 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (262)
                      |+..+++.++.+.++..-|+.+++|+.+|+|+.--+      +.+.++++.|++++..  .|+.               .
T Consensus        74 L~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~k------IlaailAI~GiVmiay--~DN~---------------~  130 (290)
T KOG4314|consen   74 LKKISASDASAIFACNAAFVFILAIIVLGDRFMGFK------ILAAILAIGGIVMIAY--ADNE---------------H  130 (290)
T ss_pred             HHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhh------HHHHHHHhCcEEEEEe--ccch---------------h
Confidence            356789999999999999999999999999998887      9999999999988864  2222               2


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHH---H-HHHHHHHHHhccCcccccccchhhHHHHHH
Q 024838           81 ENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIG---A-AQSAVYTIIVQPKAAAWSTTSGIDLWCIIY  156 (262)
Q Consensus        81 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~---~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (262)
                      ..-..|+.+++.++.+.|.|.+.-|+...+. +--...-++...+   . +...+-..+.-.+.+.|.......|..+..
T Consensus       131 a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA-n~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G  209 (290)
T KOG4314|consen  131 ADEIIGIACAVGSAFMAALYKVLFKMFIGNA-NFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCG  209 (290)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhccC-cchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhh
Confidence            2235899999999999999999999888765 3221111111111   1 122222222222223343223445888877


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838          157 SGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       157 ~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~  226 (262)
                      .+.+..+..+ +.+.++..+.|...++-+....+.-...+.++-+-..+.....|.+++..|..++...+
T Consensus       210 ~A~L~lAFN~-~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~  278 (290)
T KOG4314|consen  210 AAGLSLAFNF-LINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE  278 (290)
T ss_pred             HHHHHHHHhh-heeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence            7765554444 56688888899988888888888888888876666668888899999999988877543

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.97  E-value=2.9e-09  Score=78.02  Aligned_cols=108  Identities=13%  Similarity=0.243  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHH
Q 024838          119 AWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYF  198 (262)
Q Consensus       119 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~  198 (262)
                      .++...+.+....+.....+-.+.++......+.+++..|++....++.++.++.++.++ .+..+..++|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence            356667777777666643221111121112445666666776666899999999999995 8889999999999999999


Q ss_pred             HhccccchhhHhHHHHHHHHHhhheeccc
Q 024838          199 LVGEKLHTGCILGGLIVIIGLYSLLWGKE  227 (262)
Q Consensus       199 ~~~e~~~~~~~~G~~li~~g~~l~~~~~~  227 (262)
                      +++|+++..++.|..+++.|+.++.+.+.
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999887553

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.96  E-value=7.8e-09  Score=84.45  Aligned_cols=197  Identities=12%  Similarity=0.172  Sum_probs=151.5

Q ss_pred             HHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccchhhHHHH
Q 024838            9 MTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSI   88 (262)
Q Consensus         9 a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~   88 (262)
                      -.++.++--+-+++.+.++-      .+|+++-...+..+...|.++....|..-               +++-...|.+
T Consensus       135 QviFKccKliPVmiggifIq------GkRY~v~d~~aA~lm~lGli~FTLADs~~---------------sPNF~~~Gv~  193 (367)
T KOG1582|consen  135 QVIFKCCKLIPVMIGGIFIQ------GKRYGVHDYIAAMLMSLGLIWFTLADSQT---------------SPNFNLIGVM  193 (367)
T ss_pred             HHHHHhhhhhhhhheeeeec------cccccHHHHHHHHHHHHHHHhhhhccccc---------------CCCcceeeHH
Confidence            34555666666666677664      66677777999999999998888632211               1222347898


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCcccccc---cchhhHHHHHHHhhhhhhH
Q 024838           89 LTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKAAAWST---TSGIDLWCIIYSGAVSSCL  164 (262)
Q Consensus        89 l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~gi~~~~~  164 (262)
                      +.-.+-++-|.-..++++.++..+ +...+.++...++.+.++..+.+...-++.|..   ++-+.+...++... .+.+
T Consensus       194 mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gyl  272 (367)
T KOG1582|consen  194 MISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYL  272 (367)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHh
Confidence            888888999999999999998886 677888999999999888888865543333331   22234454444443 6678


Q ss_pred             HHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheeccc
Q 024838          165 NLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKE  227 (262)
Q Consensus       165 ~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~  227 (262)
                      +.......++..|+..+..+....-.+++++++++|..++|....-|..+++.|+++-.+.|.
T Consensus       273 G~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~  335 (367)
T KOG1582|consen  273 GIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR  335 (367)
T ss_pred             hHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence            888888999999999999999999999999999999999999999999999999999887773

>TIGR00803 nst UDP-galactose transporter

Probab=98.96  E-value=3.6e-09  Score=86.96  Aligned_cols=205  Identities=10%  Similarity=0.055  Sum_probs=127.6

Q ss_pred             chhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhc-----------CCCCCCCCCCCcc
Q 024838            5 HPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK-----------GPAVPSLKGAPIH   73 (262)
Q Consensus         5 s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~-----------~~~~~~~~~~~~~   73 (262)
                      +......+.+..++++++..+.+.++|.+..+      +++..+...|++...+.+           +-...+..+   .
T Consensus         3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~------i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~---~   73 (222)
T TIGR00803         3 SVPIHIIFKQNNLVLIALGNLLAAGKQVTQLK------ILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQ---S   73 (222)
T ss_pred             cccchHHHHhcchHHHHHhcccccceeeehHH------HHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCC---C
Confidence            34556678889999999999999988777555      999999999987543311           100000000   0


Q ss_pred             cCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHH-HHHHHHHHHHHHHHHHHHhccCc-cccc--ccchh
Q 024838           74 LGTNSVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSI-SAWMNCIGAAQSAVYTIIVQPKA-AAWS--TTSGI  149 (262)
Q Consensus        74 ~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~-~~~~--~~~~~  149 (262)
                      .+......+...|..+.+.++.+-+...+.+++..|+.+..... .....+.+.+...........+. ..+.  ...+.
T Consensus        74 ~~~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (222)
T TIGR00803        74 SAKTLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPT  153 (222)
T ss_pred             CccccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCch
Confidence            00000112445677778888888888888988876665221111 11122222222111111111110 0111  00111


Q ss_pred             hHHHHHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhh
Q 024838          150 DLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSL  222 (262)
Q Consensus       150 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~  222 (262)
                      ..+.+.    +..+++..+..+.+++.++...+....++++++.++++++++|+++..+++|+.+++.|++++
T Consensus       154 ~~~~~~----~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       154 AVWIVG----LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHHHHH----HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            112111    234566678889999999999999999999999999999999999999999999999998764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.95  E-value=1.5e-08  Score=86.99  Aligned_cols=127  Identities=16%  Similarity=0.230  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHH
Q 024838           87 SILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNL  166 (262)
Q Consensus        87 ~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~  166 (262)
                      .++++++++.|+...+..|...+.. +|....++++.++++..+++..  .++   .      .+..+...|+......+
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~~--~~~---~------~~~~~~~~g~~~~~~~~   73 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFVA--RPK---V------PLNLLLGYGLTISFGQF   73 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhc--CCC---C------chHHHHHHHHHHHHHHH
Confidence            3568899999999999999888887 9999999999998766554331  111   1      12223333443334455


Q ss_pred             HHHHHHHhh-cCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheec
Q 024838          167 FIQLWCIEQ-RGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWG  225 (262)
Q Consensus       167 ~~~~~~~~~-~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~  225 (262)
                      .+++.+.++ .+++.++++.++.|+++.++++++++|+++..+++|.++.++|+.+..+.
T Consensus        74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            566778887 57889999999999999999999999999999999999999999887743

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.91  E-value=2.6e-08  Score=85.36  Aligned_cols=131  Identities=15%  Similarity=0.156  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhH
Q 024838           85 KGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCL  164 (262)
Q Consensus        85 ~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~  164 (262)
                      .+++++++++++|+...+..|...+.. +|....++++..++++++++..  .+   ..+.   ..+..+ ..+.+....
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~-~P~~~~~~R~~~a~l~l~~~~~--~~---~~~~---~~~~~~-~~~~l~~~~   73 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSESL-GPVGGAAMIYSVSGLLLLLTVG--FP---RLRQ---FPKRYL-LAGGLLFVS   73 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHccC-ChHHHHHHHHHHHHHHHHHHcc--cc---cccc---ccHHHH-HHHhHHHHH
Confidence            467889999999999999999988888 9999999999999888776531  11   1111   111122 223333344


Q ss_pred             HHHHHHHHHh----hcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheec
Q 024838          165 NLFIQLWCIE----QRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWG  225 (262)
Q Consensus       165 ~~~~~~~~~~----~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~  225 (262)
                      .+.+++.+++    ..++..++++.++.|+++.++++++++|+++..+++|+++.++|+.+....
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            4455555654    457778889999999999999999999999999999999999999887743

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.83  E-value=5.4e-08  Score=83.68  Aligned_cols=121  Identities=14%  Similarity=0.107  Sum_probs=96.7

Q ss_pred             HHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHHhhcCc
Q 024838           99 SFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGP  178 (262)
Q Consensus        99 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~  178 (262)
                      .+++++|...+..+.|......++..+.+...+.......+   .+..+..+|..++..|++ ..+.+.+.+.++++.++
T Consensus        16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s~   91 (302)
T TIGR00817        16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPK---RLKISSALLKLLLPVAIV-HTIGHVTSNVSLSKVAV   91 (302)
T ss_pred             HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCC---CCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccH
Confidence            34456788888766899999999988877655542111111   111235578888888876 47888999999999999


Q ss_pred             eeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838          179 VFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL  223 (262)
Q Consensus       179 ~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~  223 (262)
                      +.++++..+.|+++.++++++++|+++..+++|..++++|+.+..
T Consensus        92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        92 SFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999999998754

specificities overlap.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.72  E-value=8.2e-08  Score=69.92  Aligned_cols=69  Identities=19%  Similarity=0.046  Sum_probs=62.9

Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838          156 YSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW  224 (262)
Q Consensus       156 ~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~  224 (262)
                      ..++++.++++.++..++++++.+.+-.+..+.++++.+++++++||++++.+++|.++++.|+++...
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            344466788999999999999999999999999999999999999999999999999999999988653

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.71  E-value=1e-06  Score=73.41  Aligned_cols=185  Identities=16%  Similarity=0.154  Sum_probs=123.6

Q ss_pred             hchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccchhhHHHHHHHHH
Q 024838           14 NTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVAS   93 (262)
Q Consensus        14 ~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a   93 (262)
                      .++-+.+.++++++|+|.-+.+++ . .=..++++.++|+.+.... ++..          +..+++.+...|++..+++
T Consensus        80 g~QLvg~sl~gv~~fgEW~~~~~~-~-~G~~Al~liiiGv~lts~~-~~~~----------~~~~~~~~~~kgi~~Ll~s  146 (269)
T PF06800_consen   80 GLQLVGTSLIGVLFFGEWTTTTQK-I-IGFLALVLIIIGVILTSYQ-DKKS----------DKSSSKSNMKKGILALLIS  146 (269)
T ss_pred             hHHHHHHHHHHHhhcCCCCCcchH-H-HHHHHHHHHHHHHHHhccc-cccc----------cccccccchhhHHHHHHHH
Confidence            366677899999999999987762 0 1123677777887766542 2111          0001234556899999999


Q ss_pred             HHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHH
Q 024838           94 CILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCI  173 (262)
Q Consensus        94 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~  173 (262)
                      .+.|..|.++.|.  .+. ++.+...-+.+.-.+....+..+. ++ ..++   ...|.. +..|+ .-.++-.++..+.
T Consensus       147 tigy~~Y~~~~~~--~~~-~~~~~~lPqaiGm~i~a~i~~~~~-~~-~~~~---k~~~~n-il~G~-~w~ignl~~~is~  216 (269)
T PF06800_consen  147 TIGYWIYSVIPKA--FHV-SGWSAFLPQAIGMLIGAFIFNLFS-KK-PFFE---KKSWKN-ILTGL-IWGIGNLFYLISA  216 (269)
T ss_pred             HHHHHHHHHHHHh--cCC-ChhHhHHHHHHHHHHHHHHHhhcc-cc-cccc---cchHHh-hHHHH-HHHHHHHHHHHhH
Confidence            9999999999766  334 666665555444444334443322 21 1111   222222 33343 3356777888999


Q ss_pred             hhcCceeeeehhchHHHHHHHHHHHHhccccchhhH----hHHHHHHHHHhh
Q 024838          174 EQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCI----LGGLIVIIGLYS  221 (262)
Q Consensus       174 ~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~----~G~~li~~g~~l  221 (262)
                      ++.|.+..=.+.-+.++++.+.+.+++||+=+..++    +|+++++.|.++
T Consensus       217 ~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  217 QKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999998876654    688888888764

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.69  E-value=5e-07  Score=79.33  Aligned_cols=126  Identities=13%  Similarity=0.087  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q 024838           98 SSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRG  177 (262)
Q Consensus        98 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~  177 (262)
                      ..+.+.+|..++..|-|..+..+++.++.+.+.........+.+... .....+..++.+|++.. ..+...+.++++.+
T Consensus        62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~-~~~~~~~~sl~~~s  139 (350)
T PTZ00343         62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHL-FVHFGAVISMGLGA  139 (350)
T ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Confidence            44566788888888339999999999998776554332111111111 02335666777777554 45667779999999


Q ss_pred             ceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheec
Q 024838          178 PVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWG  225 (262)
Q Consensus       178 ~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~  225 (262)
                      ++.++++..++|++++++++++++|+++..++.|.+++++|+.+....
T Consensus       140 vs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~  187 (350)
T PTZ00343        140 VSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK  187 (350)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc
Confidence            999999999999999999999999999999999999999999997643

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.65  E-value=2.6e-07  Score=76.69  Aligned_cols=140  Identities=11%  Similarity=0.154  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCccccc-ccchhhHHHHHHHhhhhh
Q 024838           84 LKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWS-TTSGIDLWCIIYSGAVSS  162 (262)
Q Consensus        84 ~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gi~~~  162 (262)
                      ..|+++.+.+-+.|+....+.|. .+.. ++....+.+.+++.+..+.+..+..+...-+. ..+++.+......+++. 
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kl-l~~~-~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li-   82 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKL-LEPL-PATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI-   82 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHH-HccC-CHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH-
Confidence            47999999999999999998877 5555 89999999999999998888776544222222 23456677777777644 


Q ss_pred             hHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838          163 CLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~  226 (262)
                      ...+.+|.++.++.....+|+=.++.|.+.+++|.++++|+++..|++..++..+|+....+..
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~  146 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL  146 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            6899999999999999999999999999999999999999999999999999999987765443

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.57  E-value=1.1e-06  Score=75.19  Aligned_cols=132  Identities=16%  Similarity=0.127  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHH
Q 024838           86 GSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLN  165 (262)
Q Consensus        86 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~  165 (262)
                      +++++++++++|+...+..|+.. .. ++....  ...++.++...+..+...+  ...  .+..+..-...|+ .-.++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~-~~~~~~--~~~~g~l~~~~~~~~~~~~--~~~--~~~~~~~g~l~G~-~w~ig   72 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GG-PYSQTL--GTTFGALILSIAIAIFVLP--EFW--ALSIFLVGLLSGA-FWALG   72 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CC-HHHHHH--HHHHHHHHHHHHHHHHhCC--ccc--ccHHHHHHHHHHH-HHHhh
Confidence            57889999999999999998855 33 333322  4555555555444433221  111  1222332333333 35678


Q ss_pred             HHHHHHHHhhcCceeeeehhc-hHHHHHHHHHHHHhccccchhh----HhHHHHHHHHHhhheecc
Q 024838          166 LFIQLWCIEQRGPVFVTIFNP-LTTVIVAVAAYFLVGEKLHTGC----ILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       166 ~~~~~~~~~~~~~~~~s~~~~-~~pv~a~~~~~~~~~e~~~~~~----~~G~~li~~g~~l~~~~~  226 (262)
                      +.++..++++.+.+.+-.+.+ +++++..+++.+++||+.+..+    ++|.++++.|+++....+
T Consensus        73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence            899999999999999988888 8889999999999999999999    999999999999986543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.54  E-value=2.6e-06  Score=72.22  Aligned_cols=141  Identities=18%  Similarity=0.259  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhh
Q 024838           84 LKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSC  163 (262)
Q Consensus        84 ~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~  163 (262)
                      ..+....+..++.|+......|.......+.......+...+.+...+... ..+ .....  ....+......+.+...
T Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~--~~~~~~~~~~~~~~~~~   81 (292)
T COG0697           6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLL-LEP-RGLRP--ALRPWLLLLLLALLGLA   81 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hhc-ccccc--cccchHHHHHHHHHHHH
Confidence            467788888889999999998887776325555555577777666332322 111 01111  11124455566667788


Q ss_pred             HHHHHHHHHHhhcCceeeeehhchHHHHHHHHHH-HHhccccchhhHhHHHHHHHHHhhheecccC
Q 024838          164 LNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAY-FLVGEKLHTGCILGGLIVIIGLYSLLWGKEG  228 (262)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~-~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~  228 (262)
                      ..+.+++.++++.++..++.+.+..|+++.++++ ++++|+++..++.|..+.+.|+++..+....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            9999999999999999999999999999999997 7679999999999999999999998865543

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.51  E-value=8e-07  Score=76.10  Aligned_cols=210  Identities=13%  Similarity=0.169  Sum_probs=112.8

Q ss_pred             cccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccc
Q 024838            2 KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHE   81 (262)
Q Consensus         2 ~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (262)
                      .+.+++..+-+..+.-++.++++..++|||++.+.      +.|..+.+.|..++... +|..++.. ........-.+.
T Consensus        72 ~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv~~-~~~~~~~~-t~~~l~~~~~~~  143 (300)
T PF05653_consen   72 GFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIVIF-APKEEPIH-TLDELIALLSQP  143 (300)
T ss_pred             HhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeEEe-CCCCCCcC-CHHHHHHHhcCc
Confidence            35677778888899999999999999999999999      99999999998877653 44331111 000000000011


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHH---HH----HHhccCcccccccchhhHHHH
Q 024838           82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAV---YT----IIVQPKAAAWSTTSGIDLWCI  154 (262)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~----~~~~~~~~~~~~~~~~~~~~~  154 (262)
                      .+ ..+...... +...+.....+|..++  +..........+++...+.   +.    ...+++ ..+.  .+..|..+
T Consensus       144 ~f-l~y~~~~~~-~~~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~-~~f~--~~~~y~l~  216 (300)
T PF05653_consen  144 GF-LVYFILVLV-LILILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAISILIKLTFSGD-NQFT--YPLTYLLL  216 (300)
T ss_pred             ce-ehhHHHHHH-HHHHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCc-hhhh--hhHHHHHH
Confidence            11 111111111 1222222222221111  1110000001111111111   11    101111 1121  23445544


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhcCceeeeehhchH-HHHHHHHHHHHhcccc--chhh----HhHHHHHHHHHhhheeccc
Q 024838          155 IYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLT-TVIVAVAAYFLVGEKL--HTGC----ILGGLIVIIGLYSLLWGKE  227 (262)
Q Consensus       155 ~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-pv~a~~~~~~~~~e~~--~~~~----~~G~~li~~g~~l~~~~~~  227 (262)
                      +.+. .+...-..+.|+++++.+++.+..+.+.. ...+++-|.++++|.-  ++.+    ..|+.+++.|+++.+..|.
T Consensus       217 ~~~v-~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~  295 (300)
T PF05653_consen  217 LVLV-VTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD  295 (300)
T ss_pred             HHHH-HHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence            4433 34456666778999999999888776654 5667777888899855  3433    4688899999999885543

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.43  E-value=3.9e-06  Score=71.90  Aligned_cols=127  Identities=9%  Similarity=-0.014  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhh
Q 024838           84 LKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSC  163 (262)
Q Consensus        84 ~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~  163 (262)
                      ..|+.++++++++|+......|...+.. ++....++++.++.++++++.... .  ..+   +.+++...+..|+. .+
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~-~~~~~~~~R~~~a~l~l~~~~~~~-~--~~~---~~~~~~~~~~~g~~-~~   82 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFPLV-GAPGVTALRLALGTLILIAIFKPW-R--LRF---AKEQRLPLLFYGVS-LG   82 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHhHH-h--ccC---CHHHHHHHHHHHHH-HH
Confidence            5789999999999999999999988888 999999999999998887664321 1  111   23456666666664 56


Q ss_pred             HHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838          164 LNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW  224 (262)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~  224 (262)
                      ..+.++++++++++++.++.+.+..|+++.+++.    |++.  +..+.++.++|+.+...
T Consensus        83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~~  137 (293)
T PRK10532         83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLLP  137 (293)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheeee
Confidence            7778899999999999999999999999988773    5554  44566777888887653

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.32  E-value=2.4e-05  Score=67.80  Aligned_cols=144  Identities=10%  Similarity=0.056  Sum_probs=101.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhh-cCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhh
Q 024838           83 WLKGSILTVASCILWSSFYIMQAFTLKK-YPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVS  161 (262)
Q Consensus        83 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  161 (262)
                      ...+.++.-.-+++-+...+....+..+ ..-|....++.+..-.++-.+..... +....+.......|+..+.+++ .
T Consensus        11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r-~~~~~~~~~~~~~~w~y~lla~-~   88 (334)
T PF06027_consen   11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYR-RGFKKWLKVLKRPWWKYFLLAL-L   88 (334)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhc-cccccchhhcchhHHHHHHHHH-H
Confidence            3445555555555555556665555444 22466666666666555555544432 2222232223445666666676 4


Q ss_pred             hhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccC
Q 024838          162 SCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEG  228 (262)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~  228 (262)
                      =..+-.+.+.|.++++.+.+.++.....+++++++++++++++++.+++|+.++++|+.++......
T Consensus        89 Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~  155 (334)
T PF06027_consen   89 DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL  155 (334)
T ss_pred             HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence            4677789999999999999999999999999999999999999999999999999999998866543

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.22  E-value=1.8e-05  Score=58.07  Aligned_cols=69  Identities=13%  Similarity=0.150  Sum_probs=58.2

Q ss_pred             hhhhhhHHHHHHHHHHhhcCceeeeeh-hchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838          158 GAVSSCLNLFIQLWCIEQRGPVFVTIF-NPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       158 gi~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~  226 (262)
                      .+++.++++.++..++|+++.+.+=.+ ..+-.+.+.+.++++++|++++.+++|.++++.|+++.....
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            344567899999999999997776444 457788899999999999999999999999999999886544

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.21  E-value=6.2e-07  Score=73.41  Aligned_cols=137  Identities=12%  Similarity=0.132  Sum_probs=98.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhh
Q 024838           82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVS  161 (262)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  161 (262)
                      ...+|..+...+ ..+....++.++...+  +|......++..-.++..|..+.....    ....+..-.+++.=|+. 
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~--~p~e~a~~r~l~~mlit~pcliy~~~~----v~gp~g~R~~LiLRg~m-  106 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEN--DPMELASFRLLVRMLITYPCLIYYMQP----VIGPEGKRKWLILRGFM-  106 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhcc--ChhHhhhhhhhhehhhhheEEEEEeee----eecCCCcEEEEEeehhh-
Confidence            344788888888 7888888888887766  666666666555555555544432211    11111112222223332 


Q ss_pred             hhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838          162 SCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~  226 (262)
                      +..+.++.++++++.+-+.+.++...+|+++++++|++++|+.+...-+|..+.+.|+++..|-.
T Consensus       107 G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  107 GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            24566777899999999999999999999999999999999999999999999999999987543

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.19  E-value=1.8e-06  Score=63.15  Aligned_cols=50  Identities=28%  Similarity=0.479  Sum_probs=46.1

Q ss_pred             cccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHH
Q 024838            2 KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF   58 (262)
Q Consensus         2 ~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~   58 (262)
                      +|.+ +.++.+.++.|+++++++++++|||+++++      +.+++++++|++++..
T Consensus        57 ~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~------~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   57 SYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRR------WLAILLILIGVILIAW  106 (113)
T ss_pred             HhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHHHHhh
Confidence            5677 588899999999999999999999999998      9999999999999976

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.18  E-value=4.2e-05  Score=65.87  Aligned_cols=130  Identities=12%  Similarity=0.062  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHhhhhcC-C--hhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHH
Q 024838           96 LWSSFYIMQAFTLKKYP-A--KLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWC  172 (262)
Q Consensus        96 ~~a~~~v~~~~~~~~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~  172 (262)
                      ++..+.+.+++..++.. .  +..+++.++....+...+.......+..     ....+...+..++ ...++..+.+.+
T Consensus        11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~a   84 (303)
T PF08449_consen   11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-----RKIPLKKYAILSF-LFFLASVLSNAA   84 (303)
T ss_pred             HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-----CcChHHHHHHHHH-HHHHHHHHHHHH
Confidence            34445577777776652 3  6788888888888877776664431111     1112233333343 446677899999


Q ss_pred             HhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838          173 IEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH  231 (262)
Q Consensus       173 ~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~  231 (262)
                      +++++.....+.-...|++++++++++++++.+..++.+.+++.+|+.+....+.++.+
T Consensus        85 l~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~  143 (303)
T PF08449_consen   85 LKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS  143 (303)
T ss_pred             HHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence            99999999999999999999999999999999999999999999999998876654443

; GO: 0055085 transmembrane transport

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.14  E-value=0.00054  Score=59.51  Aligned_cols=213  Identities=15%  Similarity=0.122  Sum_probs=118.9

Q ss_pred             ccchhHHHHh-hhchHHHHHHHHHHHhhhcc---cccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCc
Q 024838            3 YVHPTFMTAV-VNTIPCMTFIIAVVFRLEIV---DVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNS   78 (262)
Q Consensus         3 ~~s~~~a~~i-~~~~pi~~~ll~~~~~~E~~---~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~   78 (262)
                      |...+.+.-+ ..++-++..++..++++|-.   +..+  ...-+.|+++.++|+++.... +...    +.... +...
T Consensus        96 ~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~A-g~~k----~~~~~-~~~~  167 (345)
T PRK13499         96 YLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRA-GQLK----ERKMG-IKKA  167 (345)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHh-hhhc----ccccc-cccc
Confidence            3344444333 34777888888999988765   2222  233468888999998888752 2111    00000 0001


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHH-------HHHHHhhhhcCChhHHHHHHHH---HHHHHHHHHHHHh---c-cCccccc
Q 024838           79 VHENWLKGSILTVASCILWSSFY-------IMQAFTLKKYPAKLSISAWMNC---IGAAQSAVYTIIV---Q-PKAAAWS  144 (262)
Q Consensus        79 ~~~~~~~G~~l~l~a~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~---~-~~~~~~~  144 (262)
                      ++.+...|+++++++.+.++.|.       ...+...+...++.....-+..   ++.++.-.+....   . ++...+.
T Consensus       168 ~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~  247 (345)
T PRK13499        168 EEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKA  247 (345)
T ss_pred             cccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccch
Confidence            34567799999999999999999       4433321111133333332222   3333322221111   1 1111111


Q ss_pred             c--cc----hhhHHHHHHHhhhhhhHHHHHHHHHHhhcCceeeee----hhchHHHHHHHHHHHHhccccc------hhh
Q 024838          145 T--TS----GIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTI----FNPLTTVIVAVAAYFLVGEKLH------TGC  208 (262)
Q Consensus       145 ~--~~----~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~----~~~~~pv~a~~~~~~~~~e~~~------~~~  208 (262)
                      .  .+    ..+...-+..|+ .=.+++.++..+-++.+....-.    .+.+..+++.+++.+ ++|+=+      ...
T Consensus       248 ~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~-lkE~K~a~~k~~~~l  325 (345)
T PRK13499        248 DFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV-LKEWKGASRRPVRVL  325 (345)
T ss_pred             hccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhh-hhhccCCCccchhHH
Confidence            1  11    112222233333 34566777778888886554433    337777999999995 999866      555


Q ss_pred             HhHHHHHHHHHhhheec
Q 024838          209 ILGGLIVIIGLYSLLWG  225 (262)
Q Consensus       209 ~~G~~li~~g~~l~~~~  225 (262)
                      ++|+++++.|..+...+
T Consensus       326 ~~G~vliI~g~~lig~~  342 (345)
T PRK13499        326 SLGCVVIILAANIVGLG  342 (345)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            78999999998887654

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=2.2e-05  Score=66.25  Aligned_cols=208  Identities=13%  Similarity=0.174  Sum_probs=117.5

Q ss_pred             ccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccch
Q 024838            3 YVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHEN   82 (262)
Q Consensus         3 ~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (262)
                      |.+++..+-+.+++-++.++++..++|||++...      .+|+.+.++|-.++.. .+|...+.... ......-.+..
T Consensus        87 FAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~-haP~e~~i~t~-~el~~~~~~~~  158 (335)
T KOG2922|consen   87 FAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVI-HAPKEQEIESV-EEVWELATEPG  158 (335)
T ss_pred             hchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEE-ecCcccccccH-HHHHHHhcCcc
Confidence            5677778888899999999999999999999999      9999999999888876 35543110000 00000000111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHH--------H--HHhccCcccccccchhhHH
Q 024838           83 WLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVY--------T--IIVQPKAAAWSTTSGIDLW  152 (262)
Q Consensus        83 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~--~~~~~~~~~~~~~~~~~~~  152 (262)
                      +..   +..+-.+...+-....++   +. .......+..+.+.+..+-+        +  +...++   .....+..|.
T Consensus       159 Fli---y~~~iil~~~il~~~~~p---~~-g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~---~ql~~~~ty~  228 (335)
T KOG2922|consen  159 FLV---YVIIIILIVLILIFFYAP---RY-GQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN---NQLFYPLTWI  228 (335)
T ss_pred             HHH---HHHHHHHHHHHHheeecc---cc-cccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC---cccccHHHHH
Confidence            111   111111111111111111   11 11222333333333321111        1  111121   1222345566


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHhhcCceeeeehhch-HHHHHHHHHHHHhccccch------hhHhHHHHHHHHHhhheec
Q 024838          153 CIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPL-TTVIVAVAAYFLVGEKLHT------GCILGGLIVIIGLYSLLWG  225 (262)
Q Consensus       153 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~pv~a~~~~~~~~~e~~~~------~~~~G~~li~~g~~l~~~~  225 (262)
                      .++.+.. +...-..-.|+|++.-+++.++.+.++ -..++++-+.++|+|.-..      ....|+..++.|+++....
T Consensus       229 ~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~  307 (335)
T KOG2922|consen  229 FLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRT  307 (335)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeee
Confidence            6665554 334444456799999998888877665 4577888999999997643      2357999999999998755


Q ss_pred             ccCc
Q 024838          226 KEGD  229 (262)
Q Consensus       226 ~~~~  229 (262)
                      |.++
T Consensus       308 kd~~  311 (335)
T KOG2922|consen  308 KDME  311 (335)
T ss_pred             cccc
Confidence            5443

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.95  E-value=0.00015  Score=54.92  Aligned_cols=132  Identities=15%  Similarity=0.148  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHH
Q 024838           86 GSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLN  165 (262)
Q Consensus        86 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~  165 (262)
                      ..++++.+.++-+....++.++.++..++....++.+..+.+.+..+.++..+.  ..+......|+.  ++|-+.+..-
T Consensus         2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~--~lGG~lG~~~   77 (138)
T PF04657_consen    2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWA--YLGGLLGVFF   77 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHH--hccHHHHHHH
Confidence            357888999999999999999888885699999999999999998888876553  222222223333  3344455667


Q ss_pred             HHHHHHHHhhcCceeeeehhc-hHHHHHHHHHHH----HhccccchhhHhHHHHHHHHHhh
Q 024838          166 LFIQLWCIEQRGPVFVTIFNP-LTTVIVAVAAYF----LVGEKLHTGCILGGLIVIIGLYS  221 (262)
Q Consensus       166 ~~~~~~~~~~~~~~~~s~~~~-~~pv~a~~~~~~----~~~e~~~~~~~~G~~li~~g~~l  221 (262)
                      ..+....++++|++....+.. -+.+.+.+++.+    .-++++++.+++|..+++.|+++
T Consensus        78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            778889999999887766554 355666677765    45578899999999999999874

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.95  E-value=8.1e-06  Score=60.12  Aligned_cols=51  Identities=24%  Similarity=0.466  Sum_probs=47.0

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHH
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA   57 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~   57 (262)
                      +++++++.++.+.+++|++++++++++++|++++++      +.|+++++.|++++.
T Consensus        75 ~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~------~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   75 LKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQ------IIGIILIIIGVVLIS  125 (126)
T ss_pred             HHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999988888      999999999988764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.95  E-value=7.6e-05  Score=54.05  Aligned_cols=67  Identities=10%  Similarity=0.259  Sum_probs=56.1

Q ss_pred             hhhhhHHHHHHHHHHhhcCceeeeeh-hchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheec
Q 024838          159 AVSSCLNLFIQLWCIEQRGPVFVTIF-NPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWG  225 (262)
Q Consensus       159 i~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~  225 (262)
                      +++.++++.++..++++++.+.+=.. ..+..+.+.++++++|+|++++.+++|.++++.|+++....
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34567889999999999987665333 45677888999999999999999999999999999998643

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.83  E-value=0.00011  Score=63.00  Aligned_cols=117  Identities=21%  Similarity=0.270  Sum_probs=86.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-hhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhh
Q 024838           82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPA-KLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAV  160 (262)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  160 (262)
                      ++.+|..+++.++++.+....++|+...+.+. .....  ..        ....        ++  ++..|..+     +
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~~--------~~~~--------l~--~~~W~~G~-----~   58 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--SG--------GRSY--------LR--RPLWWIGL-----L   58 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ch--------hhHH--------Hh--hHHHHHHH-----H
Confidence            35689999999999999999999997766521 11000  00        0000        00  11112222     2


Q ss_pred             hhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838          161 SSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL  223 (262)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~  223 (262)
                      ...++..+...++...+++.++.+..+..++..+++.++++|+++...+.|+++++.|..+..
T Consensus        59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            334566677789999999999999999999999999999999999999999999999988755

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.82  E-value=0.00045  Score=57.81  Aligned_cols=114  Identities=18%  Similarity=0.132  Sum_probs=83.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHHhhcCceeeeehh-chHHHH
Q 024838          113 AKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFN-PLTTVI  191 (262)
Q Consensus       113 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~pv~  191 (262)
                      +|.+...-+.+-+.++.+...++..+   .+. .+...++.-+..|+ .=.+++..++++.+++|.+++..+. .++.+.
T Consensus        11 ~~~~Q~lG~t~Gali~alv~~~~~~p---~~~-~~~~~~~~~~lsG~-~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg   85 (269)
T PF06800_consen   11 KPANQILGTTIGALIFALVVFLFRQP---AFS-MSGTSFIVAFLSGA-FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVG   85 (269)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhCC---Ccc-hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcceeeeccchhHHHHH
Confidence            45555555555555555555554322   221 12355666666676 4578999999999999999999887 677788


Q ss_pred             HHHHHHHHhccccchhhHh----HHHHHHHHHhhheecccCccc
Q 024838          192 VAVAAYFLVGEKLHTGCIL----GGLIVIIGLYSLLWGKEGDQH  231 (262)
Q Consensus       192 a~~~~~~~~~e~~~~~~~~----G~~li~~g~~l~~~~~~~~~~  231 (262)
                      +.++++++|||+-+..+++    +.++++.|+++-.++++++++
T Consensus        86 ~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~  129 (269)
T PF06800_consen   86 TSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK  129 (269)
T ss_pred             HHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence            9999999999999877763    778899999998877765554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.78  E-value=0.00033  Score=50.58  Aligned_cols=64  Identities=9%  Similarity=0.190  Sum_probs=53.9

Q ss_pred             hhhhHHHHHHHHHHhhcCceee-eehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838          160 VSSCLNLFIQLWCIEQRGPVFV-TIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL  223 (262)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~  223 (262)
                      ++..++|.+...++|+++.+.+ ++...+-.+.+.+.++++++|++++.+++|.++++.|+.+..
T Consensus        43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            3557899999999999986653 445556678889999999999999999999999999998763

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.77  E-value=2.9e-05  Score=56.51  Aligned_cols=51  Identities=16%  Similarity=0.143  Sum_probs=46.7

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHH
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA   57 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~   57 (262)
                      +++.+.+.+..+.++.++++++++++++|||+++++      ++|+.++++|++++.
T Consensus        58 l~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~------~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         58 LQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRH------WCGVAFIIGGIVILG  108 (111)
T ss_pred             HhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence            356788899998889999999999999999999999      999999999998875

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.67  E-value=0.00044  Score=60.05  Aligned_cols=141  Identities=17%  Similarity=0.101  Sum_probs=93.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHH-HHHHHHhccCc-ccccccchhhHHHHHHHhhh
Q 024838           83 WLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQS-AVYTIIVQPKA-AAWSTTSGIDLWCIIYSGAV  160 (262)
Q Consensus        83 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~  160 (262)
                      ...|+++.++++++|+.+++=.|+ .|+. +....=....+++-+++ .....+..++. ..+...+...+......|++
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w-~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~   82 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKK-VKKW-SWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL   82 (345)
T ss_pred             hHHHHHHHHHHHHHhhcccccccc-cCCC-chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH
Confidence            468999999999999999999988 6666 53333111111111111 11122222221 12222345556666666664


Q ss_pred             hhhHHHHHHHHHHhhcCceeeeeh-hchHHHHHHHHHHHHhcccc---ch----hhHhHHHHHHHHHhhheecc
Q 024838          161 SSCLNLFIQLWCIEQRGPVFVTIF-NPLTTVIVAVAAYFLVGEKL---HT----GCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pv~a~~~~~~~~~e~~---~~----~~~~G~~li~~g~~l~~~~~  226 (262)
                       =.++...+..++|++|.+....+ .-++.+++.+++.+++||..   +.    ..++|.++++.|+.+..+.-
T Consensus        83 -W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag  155 (345)
T PRK13499         83 -WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG  155 (345)
T ss_pred             -HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence             46899999999999998887665 45778899999999999865   32    34689999999999987633

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.62  E-value=0.0011  Score=50.31  Aligned_cols=140  Identities=12%  Similarity=0.064  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhh
Q 024838           84 LKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSC  163 (262)
Q Consensus        84 ~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~  163 (262)
                      ....+.++++.++-.....++.++.+...+|.......+..+.+.+..+.++. ++...+....+..|+..+. |+ .++
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~-~~~~~~a~~~~~pwW~~~G-G~-lGa   80 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIK-QGHPGLAAVASAPWWAWIG-GL-LGA   80 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHh-cCCCchhhccCCchHHHHc-cc-hhh
Confidence            35678888999999999999999888886799999999999999998888873 3333333222222332222 32 322


Q ss_pred             HHHHHHHHHHhhcCcee-eeehhchHHHHHHHHHHHHhc----cccchhhHhHHHHHHHHHhhheecc
Q 024838          164 LNLFIQLWCIEQRGPVF-VTIFNPLTTVIVAVAAYFLVG----EKLHTGCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       164 ~~~~~~~~~~~~~~~~~-~s~~~~~~pv~a~~~~~~~~~----e~~~~~~~~G~~li~~g~~l~~~~~  226 (262)
                      +-...-....+++|++. ......-+.+.+++++-+=+.    .+++...++|++++++|+++..+++
T Consensus        81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~  148 (150)
T COG3238          81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG  148 (150)
T ss_pred             hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence            22333335566666543 344445566677777766444    6789999999999999966666543

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.60  E-value=0.0007  Score=48.56  Aligned_cols=66  Identities=14%  Similarity=0.285  Sum_probs=55.6

Q ss_pred             hhhhhHHHHHHHHHHhhcCceee-eehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838          159 AVSSCLNLFIQLWCIEQRGPVFV-TIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW  224 (262)
Q Consensus       159 i~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~  224 (262)
                      +++..+++.+...++|+++.+.+ ++..-+-.+.+.+.++++++|++++.+++|..+++.|++....
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            34557899999999999986653 5555577788999999999999999999999999999988753

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.57  E-value=0.00056  Score=48.71  Aligned_cols=65  Identities=20%  Similarity=0.283  Sum_probs=55.1

Q ss_pred             hhhHHHHHHHHHHhhcCcee-eeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheec
Q 024838          161 SSCLNLFIQLWCIEQRGPVF-VTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWG  225 (262)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~-~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~  225 (262)
                      +..++|.+...++|+++.+. .++..-+-.+.+.+.++++|+|++++.+++|..++++|+......
T Consensus        39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            45688899999999988654 356666777889999999999999999999999999999887643

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.53  E-value=0.00032  Score=58.36  Aligned_cols=79  Identities=10%  Similarity=0.143  Sum_probs=66.0

Q ss_pred             hHHHHHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCc
Q 024838          150 DLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGD  229 (262)
Q Consensus       150 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~  229 (262)
                      +...++.=++ ...+.-.+.+.++++++|+...++..+..+++.++++++++++++..||.+..+.++|+.+........
T Consensus        16 ~~~~~~vPA~-lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   16 DTLKLAVPAL-LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            3333333333 345666788899999999999999999999999999999999999999999999999999988766544

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.51  E-value=0.00041  Score=48.74  Aligned_cols=56  Identities=20%  Similarity=0.273  Sum_probs=34.6

Q ss_pred             hhhhHHHHHHHHHHhhcCceee-eehhchHHHHHHHHHHHHhccccchhhHhHHHHH
Q 024838          160 VSSCLNLFIQLWCIEQRGPVFV-TIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIV  215 (262)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li  215 (262)
                      .+..+++.++.+++|+++.+.+ .+...+..+.+.+.++++++|++++.++.|..++
T Consensus        37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            3567899999999999998887 4455688899999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.40  E-value=2.7e-05  Score=56.83  Aligned_cols=50  Identities=12%  Similarity=0.300  Sum_probs=43.5

Q ss_pred             cccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHH
Q 024838            2 KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA   57 (262)
Q Consensus         2 ~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~   57 (262)
                      |...++...-+..++|+++++++++++|||++.++      ++|+++..+|++++.
T Consensus        89 k~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs  138 (140)
T COG2510          89 KKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS  138 (140)
T ss_pred             hcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence            34556667778889999999999999999999999      999999999987763

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=97.16  E-value=0.0013  Score=54.67  Aligned_cols=132  Identities=11%  Similarity=0.062  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHH
Q 024838           86 GSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLN  165 (262)
Q Consensus        86 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~  165 (262)
                      |++..+.|+++++...+=.|+.- .. |++....+++....+....+.++.+.  +.+.      .+.++.-.+.  +.+
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~-~g-Dg~~fQw~~~~~i~~~g~~v~~~~~~--p~f~------p~amlgG~lW--~~g   68 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFD-TG-DGFFFQWVMCSGIFLVGLVVNLILGF--PPFY------PWAMLGGALW--ATG   68 (254)
T ss_pred             CchhHHHHHHHhcccceeeEecc-CC-CcHHHHHHHHHHHHHHHHHHHHhcCC--Ccce------eHHHhhhhhh--hcC
Confidence            56778899999999988877643 33 78888877777777777766665432  1111      1111110111  111


Q ss_pred             HHHHHHHHhhcCceeeeeh-hchHHHHHHHHHHH-Hhcccc-----chhhHhHHHHHHHHHhhheecccCc
Q 024838          166 LFIQLWCIEQRGPVFVTIF-NPLTTVIVAVAAYF-LVGEKL-----HTGCILGGLIVIIGLYSLLWGKEGD  229 (262)
Q Consensus       166 ~~~~~~~~~~~~~~~~s~~-~~~~pv~a~~~~~~-~~~e~~-----~~~~~~G~~li~~g~~l~~~~~~~~  229 (262)
                      -.+-.-.+|.+|-...-.+ ...+-+.+...+.+ +||++.     .+..++|++++++|..++..-|.+.
T Consensus        69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~  139 (254)
T PF07857_consen   69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE  139 (254)
T ss_pred             ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence            1122233444443322222 22344455555544 454433     4566899999999998887666554

The region concerned is approximately 280 residues long.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=97.11  E-value=0.032  Score=48.12  Aligned_cols=142  Identities=6%  Similarity=-0.003  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcC---ChhHHHHHHHHHHHHHHHHHHHHhccC--------cccccccchhhHHH
Q 024838           85 KGSILTVASCILWSSFYIMQAFTLKKYP---AKLSISAWMNCIGAAQSAVYTIIVQPK--------AAAWSTTSGIDLWC  153 (262)
Q Consensus        85 ~G~~l~l~a~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~  153 (262)
                      .-++.++...+.++......|+..+...   .+.+..+..-++-.++++...+..++.        ...+....+.+...
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            4566667777778888888777554431   467777777788888887777755321        00111111111111


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheeccc
Q 024838          154 IIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKE  227 (262)
Q Consensus       154 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~  227 (262)
                      +..=.. ..++-..+++.+..+++++...+...+....+.++..++++++++.+||...++...|+.+++....
T Consensus        95 ~~vPa~-iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~  167 (345)
T KOG2234|consen   95 VSVPAL-IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSL  167 (345)
T ss_pred             HHHHHH-HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence            111111 2233334777999999999999999999999999999999999999999999999999999984443

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.00041  Score=56.51  Aligned_cols=132  Identities=13%  Similarity=0.079  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHH
Q 024838           86 GSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLN  165 (262)
Q Consensus        86 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~  165 (262)
                      .++.+++=++.|+.......|..  . +|.....-+.+.+.+..+.+.++..+ ..+     ...++.-+..|.+= .++
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~G--G-~p~qQ~lGtT~GALifaiiv~~~~~p-~~T-----~~~~iv~~isG~~W-s~G   72 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFG--G-KPYQQTLGTTLGALIFAIIVFLFVSP-ELT-----LTIFIVGFISGAFW-SFG   72 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecC--C-ChhHhhhhccHHHHHHHHHHheeecC-ccc-----hhhHHHHHHhhhHh-hhh
Confidence            46788889999998888865522  1 45555544444444444444443222 111     23344444555533 578


Q ss_pred             HHHHHHHHhhcCceeeeehhc-hHHHHHHHHHHHHhccccchhhH----hHHHHHHHHHhhheeccc
Q 024838          166 LFIQLWCIEQRGPVFVTIFNP-LTTVIVAVAAYFLVGEKLHTGCI----LGGLIVIIGLYSLLWGKE  227 (262)
Q Consensus       166 ~~~~~~~~~~~~~~~~s~~~~-~~pv~a~~~~~~~~~e~~~~~~~----~G~~li~~g~~l~~~~~~  227 (262)
                      +..++++++.++.+++..+.. .+.+-+-+++++.|||+.+..+.    +..++++.|+++-.++++
T Consensus        73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence            999999999999999988764 67788999999999999998886    356788888888876654

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.73  E-value=0.0012  Score=56.78  Aligned_cols=125  Identities=14%  Similarity=0.219  Sum_probs=90.2

Q ss_pred             HHHHHHHHhhh--hcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHHHHhhc
Q 024838           99 SFYIMQAFTLK--KYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLWCIEQR  176 (262)
Q Consensus        99 ~~~v~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  176 (262)
                      ..++..|+.++  ..+-|++.+..++..+.+.....-.+...+..  +..++..|..++-++++. .++..+-+.++++.
T Consensus        31 ~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~--~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v  107 (316)
T KOG1441|consen   31 GVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS--KISSKLPLRTLLPLGLVF-CISHVLGNVSLSYV  107 (316)
T ss_pred             eeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC--ccccccchHHHHHHHHHH-HHHHHhcchhhhcc
Confidence            33445678787  55568888888777776666665554333222  222345677777778744 67888899999999


Q ss_pred             CceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838          177 GPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       177 ~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~  226 (262)
                      +.+..-..-.++|+++.++++++.+|+.+...+.-...++.|+.+..+.+
T Consensus       108 ~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e  157 (316)
T KOG1441|consen  108 PVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE  157 (316)
T ss_pred             chhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc
Confidence            99999999999999999999999999998877666666666655555433

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.65  E-value=0.0071  Score=43.82  Aligned_cols=108  Identities=11%  Similarity=0.045  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHHHHHHH
Q 024838           92 ASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNLFIQLW  171 (262)
Q Consensus        92 ~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~  171 (262)
                      +.++.|+..+-+.|+..+..++.... . +..-....     ++     ..|+     .+.     .......+-..|+.
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~~~~~~~~-----Ll-----~n~~-----y~i-----pf~lNq~GSv~f~~   60 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-QLLQEIKF-----LL-----LNPK-----YII-----PFLLNQSGSVLFFL   60 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCCccch-H-HHHHHHHH-----HH-----HhHH-----HHH-----HHHHHHHHHHHHHH
Confidence            45678999999999988776322221 1 21111111     11     1111     111     22233455678889


Q ss_pred             HHhhcCceeeeeh-hchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhh
Q 024838          172 CIEQRGPVFVTIF-NPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYS  221 (262)
Q Consensus       172 ~~~~~~~~~~s~~-~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l  221 (262)
                      .+.+.+-+.+..+ +.+.-+++++.++++.+|..+...++|+.+++.|+.+
T Consensus        61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            9999999999988 5899999999999988888899999999999999765

Many members are annotated as potential transmembrane proteins.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.58  E-value=0.00021  Score=58.17  Aligned_cols=197  Identities=14%  Similarity=0.173  Sum_probs=114.1

Q ss_pred             cccchhHHHHhhh-chHHHHHHHHHHHhhhcccccCCCcchhhhh---HHHHhHHHHHHHHhcCCCCCCCCCCCcccCCC
Q 024838            2 KYVHPTFMTAVVN-TIPCMTFIIAVVFRLEIVDVRSPRGIAKILG---TLASLVGVMVIAFYKGPAVPSLKGAPIHLGTN   77 (262)
Q Consensus         2 ~~~s~~~a~~i~~-~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g---~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~   77 (262)
                      +|.+.+.+.-+.. ++-+-+.+++++.++|..+..+.     ++|   +++.++|+.+-... .++     |.     ..
T Consensus        81 ~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~-----IlG~iAliliviG~~lTs~~-~~~-----nk-----~~  144 (288)
T COG4975          81 QLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI-----ILGFIALILIVIGIYLTSKQ-DRN-----NK-----EE  144 (288)
T ss_pred             eeeeeeccccccchhhHhhceeeeEEEEeccCcchhH-----HHHHHHHHHHHHhheEeeee-ccc-----cc-----cc
Confidence            3444555544444 66677888899999998887761     222   33444444333321 110     00     11


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHH
Q 024838           78 SVHENWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYS  157 (262)
Q Consensus        78 ~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (262)
                      +...+...|....+.+.+.|..|.++.+...-..-+..-..+.-+..+++   .+.. ...+ . .   .++..+.-..-
T Consensus       145 ~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~al---i~~~-~~~~-~-~---~~K~t~~nii~  215 (288)
T COG4975         145 ENPSNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGAL---ILGF-FKME-K-R---FNKYTWLNIIP  215 (288)
T ss_pred             cChHhhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHH---HHhh-cccc-c-c---hHHHHHHHHhh
Confidence            12445678999999999999999999665431111333333333333322   2222 2111 1 1   12222222333


Q ss_pred             hhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhH----hHHHHHHHHHhhhee
Q 024838          158 GAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCI----LGGLIVIIGLYSLLW  224 (262)
Q Consensus       158 gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~----~G~~li~~g~~l~~~  224 (262)
                      |++ =+.+-..+..+.++.|....=.+.-+-.+.+.+-+.++++|+=|..++    +|..+++.|..+.-.
T Consensus       216 G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~  285 (288)
T COG4975         216 GLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI  285 (288)
T ss_pred             HHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence            432 245556666777777766666666666788999999999999988775    688888888776543

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=96.41  E-value=0.0035  Score=46.78  Aligned_cols=51  Identities=16%  Similarity=0.352  Sum_probs=43.7

Q ss_pred             cccchhHHHHhhhchHHHHHHHHHH--HhhhcccccCCCcchhhhhHHHHhHHHHHHHH
Q 024838            2 KYVHPTFMTAVVNTIPCMTFIIAVV--FRLEIVDVRSPRGIAKILGTLASLVGVMVIAF   58 (262)
Q Consensus         2 ~~~s~~~a~~i~~~~pi~~~ll~~~--~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~   58 (262)
                      +..+.+.+..+....+.++++.++.  +++|++++++      ++|+.+.++|++++..
T Consensus        70 ~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~------~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         70 RYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKK------TLGVACIMLGVWLINL  122 (129)
T ss_pred             HhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhcc
Confidence            4567788888888888888888885  8999999998      9999999999988853

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=95.98  E-value=0.0075  Score=52.25  Aligned_cols=68  Identities=13%  Similarity=0.142  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCcc
Q 024838          163 CLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQ  230 (262)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~  230 (262)
                      +++...++.++....++..+++...+-+|+..++.++-+|++++.+.++..+.+.|+++++.++.+++
T Consensus       170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~  237 (416)
T KOG2765|consen  170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN  237 (416)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence            56778899999999999999999999999999999999999999999999999999999998876553

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=95.85  E-value=0.012  Score=41.92  Aligned_cols=50  Identities=18%  Similarity=0.129  Sum_probs=40.6

Q ss_pred             cccchhHH-HHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHH
Q 024838            2 KYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA   57 (262)
Q Consensus         2 ~~~s~~~a-~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~   57 (262)
                      |+.+.+.+ ++....-.+.+++.++++++|++++.+      ++|+.+.++|++.+=
T Consensus        52 k~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~------~~gl~LiiaGvi~Lk  102 (106)
T COG2076          52 KTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIK------LLGLALILAGVIGLK  102 (106)
T ss_pred             hhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHH------HHHHHHHHHHHHHhh
Confidence            33444443 456668889999999999999999998      999999999998773

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=95.75  E-value=0.014  Score=42.25  Aligned_cols=50  Identities=20%  Similarity=0.267  Sum_probs=40.3

Q ss_pred             ccchhHHHH-hhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHH
Q 024838            3 YVHPTFMTA-VVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF   58 (262)
Q Consensus         3 ~~s~~~a~~-i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~   58 (262)
                      +.+.+.+-. ...+.-+.+.++++++++|++++.+      +.|+.+.++|++++-.
T Consensus        53 ~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~------~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         53 YIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLVINL  103 (110)
T ss_pred             hCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence            444454444 3557888899999999999999998      9999999999988843

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=95.74  E-value=0.012  Score=43.27  Aligned_cols=51  Identities=16%  Similarity=0.133  Sum_probs=41.4

Q ss_pred             cccchhHHHHh-hhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHH
Q 024838            2 KYVHPTFMTAV-VNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF   58 (262)
Q Consensus         2 ~~~s~~~a~~i-~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~   58 (262)
                      ++.+.+.+-.+ ..+.-+.++++++++++|++++.+      ++|+.+.++|++++-.
T Consensus        52 ~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~------~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         52 KKIALGVAYALWEGIGILFITLFSVLLFDESLSLMK------IAGLTTLVAGIVLIKS  103 (120)
T ss_pred             hhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHhhc
Confidence            34555555444 468889999999999999999998      9999999999988743

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.48  E-value=0.008  Score=51.06  Aligned_cols=120  Identities=19%  Similarity=0.286  Sum_probs=87.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhcc-CcccccccchhhHHHHHHHhhh
Q 024838           82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQP-KAAAWSTTSGIDLWCIIYSGAV  160 (262)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi~  160 (262)
                      .+..|..+++.+.+..+...++.||..++. ...                 .. ... ....+.    ..+.|  +.|.+
T Consensus        18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~-~~~-----------------~~-ra~~gg~~yl----~~~~W--w~G~l   72 (335)
T KOG2922|consen   18 DNIIGLVLAISSSIFIGSSFILKKKGLKRA-GAS-----------------GL-RAGEGGYGYL----KEPLW--WAGML   72 (335)
T ss_pred             CceeeeeehhhccEEEeeehhhhHHHHHHH-hhh-----------------cc-cccCCCcchh----hhHHH--HHHHH
Confidence            345899999999999999999998887775 110                 00 111 111111    11111  23444


Q ss_pred             hhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838          161 SSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~  226 (262)
                      ...++-...+.+....+++.++.+..++.++..+++..+++|+++....+|++++++|-.+....-
T Consensus        73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha  138 (335)
T KOG2922|consen   73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA  138 (335)
T ss_pred             HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence            555666677777788899999999999999999999999999999999999999999977765433

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=95.44  E-value=0.12  Score=43.87  Aligned_cols=125  Identities=11%  Similarity=0.135  Sum_probs=88.9

Q ss_pred             HHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHH----HHHHhhhhhhHHHHHHHHHHhhc
Q 024838          101 YIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWC----IIYSGAVSSCLNLFIQLWCIEQR  176 (262)
Q Consensus       101 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~gi~~~~~~~~~~~~~~~~~  176 (262)
                      ..+.++..++++=|...+..+..+-.......-.......+.-+  .+..|.-    ++-.++ ++++-..+-|++++++
T Consensus        32 tf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r--~~~sw~~~Lr~~aPtal-ata~DIGLSN~sl~yV  108 (349)
T KOG1443|consen   32 TFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRAR--VVLSWRDYLRRLAPTAL-ATALDIGLSNWSLEYV  108 (349)
T ss_pred             HHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccc--cCCcHHHHHHHhhhhhh-hhhcccccccceeeee
Confidence            33445555556456666666666655555555444443222111  1112222    223444 7788889999999999


Q ss_pred             CceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccC
Q 024838          177 GPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEG  228 (262)
Q Consensus       177 ~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~  228 (262)
                      +.+..++.-...++|..+++.++-=|++++....=..+|..|+++..++..+
T Consensus       109 tlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq  160 (349)
T KOG1443|consen  109 TLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ  160 (349)
T ss_pred             eeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc
Confidence            9999999999999999999999999999999988889999999999886654

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=95.39  E-value=0.016  Score=44.29  Aligned_cols=49  Identities=24%  Similarity=0.425  Sum_probs=45.2

Q ss_pred             CcccchhHHHHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHH
Q 024838            1 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV   55 (262)
Q Consensus         1 l~~~s~~~a~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~   55 (262)
                      ++++||...++...+-.+++.++++++++|+++.++      +.|+.++++|+++
T Consensus       102 i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~------~~G~~l~~~G~~~  150 (153)
T PF03151_consen  102 IKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQ------IIGIVLALVGVLL  150 (153)
T ss_pred             hhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHH------HHHHHHHHHHHhe
Confidence            468999999999999999999999999999999888      9999999999764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=95.37  E-value=0.023  Score=41.00  Aligned_cols=48  Identities=10%  Similarity=0.068  Sum_probs=38.7

Q ss_pred             ccchhHH-HHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHH
Q 024838            3 YVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVI   56 (262)
Q Consensus         3 ~~s~~~a-~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l   56 (262)
                      +.+.+.+ ++.....-+.+.+++++++||++++.+      +.|+.+.++|++.+
T Consensus        58 ~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~------~~gi~lIi~GVi~l  106 (109)
T PRK10650         58 GIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKG------WIGLVLLLAGMVMI  106 (109)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHh
Confidence            3444444 345567888999999999999999998      99999999998775

>PRK11431 multidrug efflux system protein; Provisional

Probab=95.02  E-value=0.03  Score=40.13  Aligned_cols=47  Identities=11%  Similarity=0.033  Sum_probs=38.6

Q ss_pred             cchhHH-HHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHH
Q 024838            4 VHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVI   56 (262)
Q Consensus         4 ~s~~~a-~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l   56 (262)
                      .+.+.+ ++...+.-+.+.+++++++||++++.+      ++|+.+.++|++.+
T Consensus        53 ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~------~~gi~lIi~GVv~l  100 (105)
T PRK11431         53 LPVGTAYAVWTGIGAVGAAITGIVLLGESASPAR------LLSLALIVAGIIGL  100 (105)
T ss_pred             CCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHhh
Confidence            344443 345568888999999999999999998      99999999998877

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.93  E-value=0.054  Score=44.19  Aligned_cols=137  Identities=9%  Similarity=0.048  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhh-cC-C---------hhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHH
Q 024838           89 LTVASCILWSSFYIMQAFTLKK-YP-A---------KLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYS  157 (262)
Q Consensus        89 l~l~a~~~~a~~~v~~~~~~~~-~~-~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (262)
                      ++..--+||-.|.+.++|..+. +. +         ...+.+++|....+..=++..+...  ......  ..|.. +.+
T Consensus        17 ca~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~--~~~D~t--~~~~Y-aAc   91 (337)
T KOG1580|consen   17 CAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKK--TEIDNT--PTKMY-AAC   91 (337)
T ss_pred             EecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccc--ccccCC--cchHH-HHH
Confidence            3344456888999999887643 21 1         2345555555555544433332221  111111  11222 222


Q ss_pred             hhhhhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCccc
Q 024838          158 GAVSSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGDQH  231 (262)
Q Consensus       158 gi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~  231 (262)
                      . ....++...-|.+++..+=...-+--.-.|+-.+++++++.+.+.++..+....+|+.|+.+..++++|...
T Consensus        92 s-~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g  164 (337)
T KOG1580|consen   92 S-ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG  164 (337)
T ss_pred             H-HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence            2 244566677788999988777777778889999999999999999999999999999999999987665543

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=94.71  E-value=1.3  Score=36.74  Aligned_cols=103  Identities=11%  Similarity=-0.079  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHH
Q 024838           86 GSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLN  165 (262)
Q Consensus        86 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~  165 (262)
                      ...+.+.+.++--...-+.|.+.... .+...+.++..+++++++++.-..      ....+..+|..++..|+ +.+..
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~v-G~~g~t~lRl~~aaLIll~l~RPw------r~r~~~~~~~~~~~yGv-sLg~M   84 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLV-GAAGVTALRLAIAALILLALFRPW------RRRLSKPQRLALLAYGV-SLGGM   84 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHcccc-ChhhHHHHHHHHHHHHHHHHhhHH------HhccChhhhHHHHHHHH-HHHHH
Confidence            57778888888888888887777776 888899999999988887765421      12234567888888887 55556


Q ss_pred             HHHHHHHHhhcCceeeeehhchHHHHHHHHH
Q 024838          166 LFIQLWCIEQRGPVFVTIFNPLTTVIVAVAA  196 (262)
Q Consensus       166 ~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~  196 (262)
                      ..+++.++++++-..+-.+..+-|....+++
T Consensus        85 Nl~FY~si~riPlGiAVAiEF~GPL~vA~~~  115 (292)
T COG5006          85 NLLFYLSIERIPLGIAVAIEFTGPLAVALLS  115 (292)
T ss_pred             HHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence            6688899999999999999999887655543

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=94.48  E-value=0.029  Score=44.46  Aligned_cols=63  Identities=13%  Similarity=0.247  Sum_probs=58.2

Q ss_pred             HHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheeccc
Q 024838          165 NLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKE  227 (262)
Q Consensus       165 ~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~  227 (262)
                      +-+.|..++++++++.++.+..-.-.|..+++++++++++...+++.+.+.+.|++++.|..+
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN  128 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN  128 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence            345889999999999999999999999999999999999999999999999999999887654

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=94.39  E-value=0.27  Score=42.50  Aligned_cols=147  Identities=14%  Similarity=0.065  Sum_probs=90.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHH-HhccCcc-cccccchhhHHHHHHHhh
Q 024838           82 NWLKGSILTVASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTI-IVQPKAA-AWSTTSGIDLWCIIYSGA  159 (262)
Q Consensus        82 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~gi  159 (262)
                      +...|+++-.+++++.+.+++=.|| .|+. +..+.=..+.+++-++.-.+.. +..++.. -+...+...+......|+
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kk-vk~W-sWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~   81 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKK-VKGW-SWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV   81 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhh-cCCc-cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence            4568999999999999999999877 5566 6665555555555444433332 2333222 122223345555555665


Q ss_pred             hhhhHHHHHHHHHHhhcCceee-eehhchHHHHHHHHHHHHhcc-------ccchhhHhHHHHHHHHHhhheecccCccc
Q 024838          160 VSSCLNLFIQLWCIEQRGPVFV-TIFNPLTTVIVAVAAYFLVGE-------KLHTGCILGGLIVIIGLYSLLWGKEGDQH  231 (262)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~pv~a~~~~~~~~~e-------~~~~~~~~G~~li~~g~~l~~~~~~~~~~  231 (262)
                      += +++-..|-.++|++|.+.. ++..-+.-+++.++-.++.++       .-....++|.++++.|+.+.-+.-..+++
T Consensus        82 lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~  160 (344)
T PF06379_consen   82 LW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEK  160 (344)
T ss_pred             HH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhh
Confidence            33 4666788899999996653 333344445555554444332       22346678999999999987655444333

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.34  E-value=0.77  Score=39.28  Aligned_cols=133  Identities=11%  Similarity=0.108  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHH--HHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhH
Q 024838           87 SILTVASCILWSSFYIMQAFTLKKYPAKLSISA--WMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCL  164 (262)
Q Consensus        87 ~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~  164 (262)
                      ...++.=|++-..-.+..|....+++-|.....  .+.+.+.+.....-...--+.++......+.|..+-.+-    ..
T Consensus        14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf----~~   89 (314)
T KOG1444|consen   14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLF----VG   89 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHH----HH
Confidence            333444444445556667777777754444444  788777776666554322233333333333333322211    11


Q ss_pred             HHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838          165 NLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL  223 (262)
Q Consensus       165 ~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~  223 (262)
                      ....-..+++++......++-.++|+++++...++++-+++...+.....+++|.....
T Consensus        90 ~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~  148 (314)
T KOG1444|consen   90 MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA  148 (314)
T ss_pred             HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence            22333478999999999999999999999999999999999999999999999977654

>PRK02237 hypothetical protein; Provisional

Probab=93.39  E-value=0.31  Score=34.68  Aligned_cols=46  Identities=9%  Similarity=0.195  Sum_probs=38.9

Q ss_pred             eeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838          181 VTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       181 ~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~  226 (262)
                      .+.+.-+..+.++++++.+-+++|+.+.++|.++++.|..+..+..
T Consensus        62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            3455666778899999999999999999999999999988776544

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=93.17  E-value=0.098  Score=36.61  Aligned_cols=41  Identities=15%  Similarity=0.023  Sum_probs=21.5

Q ss_pred             cccchhHH-HHhhhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHH
Q 024838            2 KYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLA   48 (262)
Q Consensus         2 ~~~s~~~a-~~i~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l   48 (262)
                      |+.+.+.+ .+...+..+.+.++++++++|++++++      +.|+.+
T Consensus        51 ~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l   92 (93)
T PF00893_consen   51 KKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL   92 (93)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence            45556666 445668899999999999999999999      888765

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=92.99  E-value=0.11  Score=43.96  Aligned_cols=130  Identities=15%  Similarity=0.147  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhcc-------Ccccc-ccc--chhhHHHHHHHhhh
Q 024838           91 VASCILWSSFYIMQAFTLKKYPAKLSISAWMNCIGAAQSAVYTIIVQP-------KAAAW-STT--SGIDLWCIIYSGAV  160 (262)
Q Consensus        91 l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~-~~~--~~~~~~~~~~~gi~  160 (262)
                      +++.+||+.+...+|..-|+...+ ....+=+.++.++..++..+.-+       +.+.+ +..  .+..-+..+..|-+
T Consensus         2 ~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv   80 (336)
T PF07168_consen    2 VITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV   80 (336)
T ss_pred             eeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence            567789999999988877665222 22333333333333333222111       11111 110  11222333344434


Q ss_pred             hhhHHHHHHHHHHhhcCceeeeehhc-hHHHHHHHHHHHHhccccc--hhhHhHHHHHHHHHhhh
Q 024838          161 SSCLNLFIQLWCIEQRGPVFVTIFNP-LTTVIVAVAAYFLVGEKLH--TGCILGGLIVIIGLYSL  222 (262)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~s~~~~-~~pv~a~~~~~~~~~e~~~--~~~~~G~~li~~g~~l~  222 (262)
                      ..-++-.+..+++...|.+.+-++.. +..+.++++.|+ ++.+.+  ...+.|.+++++++++-
T Consensus        81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lg  144 (336)
T PF07168_consen   81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILG  144 (336)
T ss_pred             hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHH
Confidence            45577778888888888777665542 233456666665 455554  35667999998888874

Transport is dependent on glucose and a proton gradient [].

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.32  E-value=0.24  Score=41.45  Aligned_cols=110  Identities=16%  Similarity=0.147  Sum_probs=80.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhcc-----Cccccccc--chhhHHHHHHHhhhhhhHHHHHHHHHHhhcCceeeeehh
Q 024838          113 AKLSISAWMNCIGAAQSAVYTIIVQP-----KAAAWSTT--SGIDLWCIIYSGAVSSCLNLFIQLWCIEQRGPVFVTIFN  185 (262)
Q Consensus       113 ~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~s~~~  185 (262)
                      .|.....+++++...+++........     +++..+..  ...+..-+.+    ...+.....+.++++.+.+..-+-.
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsv----Vfi~mI~fnnlcL~yVgVaFYyvgR  135 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSV----VFILMISFNNLCLKYVGVAFYYVGR  135 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhh----eeeeehhccceehhhcceEEEEecc
Confidence            57788888999998888888765332     12222211  1112222211    1123445678899999999999999


Q ss_pred             chHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838          186 PLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       186 ~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~  226 (262)
                      .+..+|++++.+++++++-+.....+|.+|+.|..+-...+
T Consensus       136 sLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE  176 (347)
T KOG1442|consen  136 SLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE  176 (347)
T ss_pred             chhhhHHHHhHHhhcccccccccceeehhheehheeccccc
Confidence            99999999999999999999999999999999988876544

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=91.68  E-value=5.7  Score=33.97  Aligned_cols=129  Identities=9%  Similarity=0.054  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHhhhh--------cCChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhhhhHHH
Q 024838           95 ILWSSFYIMQAFTLKK--------YPAKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVSSCLNL  166 (262)
Q Consensus        95 ~~~a~~~v~~~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~  166 (262)
                      ..+-.+.+++++++++        +.++.-..+.+-+.+.+............     ......|....+.++ ...++-
T Consensus        24 ~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~-----~~~~apl~~y~~is~-tn~~s~   97 (327)
T KOG1581|consen   24 ATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKE-----LSGVAPLYKYSLISF-TNTLSS   97 (327)
T ss_pred             HHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccccc-----CCCCCchhHHhHHHH-Hhhcch
Confidence            3555667777776532        23566667777777766664333322111     111233444445554 455677


Q ss_pred             HHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecccCc
Q 024838          167 FIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGKEGD  229 (262)
Q Consensus       167 ~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~  229 (262)
                      .|.+.++++++=....+.-....+-.++++.++.+.+.+....+-+.++-+|+.+....++..
T Consensus        98 ~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~  160 (327)
T KOG1581|consen   98 WCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD  160 (327)
T ss_pred             HHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence            789999999998888888888888899999999999999999999999999998887665544

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=90.57  E-value=0.39  Score=34.13  Aligned_cols=44  Identities=14%  Similarity=0.273  Sum_probs=37.5

Q ss_pred             ehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838          183 IFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       183 ~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~  226 (262)
                      .+.-+..+.++++++.+-+++|+.+.++|..+++.|..+..+..
T Consensus        62 AYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P  105 (107)
T PF02694_consen   62 AYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP  105 (107)
T ss_pred             HhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence            34455677889999999999999999999999999988877654

; GO: 0016020 membrane

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=89.97  E-value=12  Score=32.54  Aligned_cols=203  Identities=16%  Similarity=0.177  Sum_probs=109.5

Q ss_pred             hchHHHHHHHHHHHhhhcc-cccCCCcchhhhhHHHHhHHHHHHHHhcCCCCCCCCCCCcccCCCcccchhhHHHHHHHH
Q 024838           14 NTIPCMTFIIAVVFRLEIV-DVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVA   92 (262)
Q Consensus        14 ~~~pi~~~ll~~~~~~E~~-~~~~~~~~~~~~g~~l~~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~   92 (262)
                      .+...+..++-.++.++-- -..++-+...++|+++.++|+.+.... |..    ++...+  .+.++.+...|.+++++
T Consensus       108 Gl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A-G~~----Ke~~~~--~~~~efn~~kGl~iAv~  180 (344)
T PF06379_consen  108 GLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA-GSM----KEKELG--EEAKEFNFKKGLIIAVL  180 (344)
T ss_pred             HHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH-HHh----hhhhhc--cchhhhhhhhhHHHHHH
Confidence            3444455555444433210 012334556789999999999888752 211    111111  11245667789999999


Q ss_pred             HHHHHHHHHHHHHHhh------hhc-CChhH----HHHHHHHHHHHHHHHHHHHh--c-cCcc---cccccc---hhhHH
Q 024838           93 SCILWSSFYIMQAFTL------KKY-PAKLS----ISAWMNCIGAAQSAVYTIIV--Q-PKAA---AWSTTS---GIDLW  152 (262)
Q Consensus        93 a~~~~a~~~v~~~~~~------~~~-~~~~~----~~~~~~~~~~v~~~~~~~~~--~-~~~~---~~~~~~---~~~~~  152 (262)
                      +.++-|..++-.....      ... .++..    .....+.-+.+.-+.+.++.  . ++..   ++....   ..++.
T Consensus       181 sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~  260 (344)
T PF06379_consen  181 SGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYL  260 (344)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHH
Confidence            9998887777643211      000 01111    11222333444444444332  1 1211   111101   13444


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHhhcCce----eeeehhchHHHHHHHHHHHHhcccc------chhhHhHHHHHHHHHhhh
Q 024838          153 CIIYSGAVSSCLNLFIQLWCIEQRGPV----FVTIFNPLTTVIVAVAAYFLVGEKL------HTGCILGGLIVIIGLYSL  222 (262)
Q Consensus       153 ~~~~~gi~~~~~~~~~~~~~~~~~~~~----~~s~~~~~~pv~a~~~~~~~~~e~~------~~~~~~G~~li~~g~~l~  222 (262)
                      ..+..|.+ =...+++|-++-.+++..    --.+.+.+..+++-+++.+ ++|.=      -...++|+++++.++.++
T Consensus       261 ~~aLaG~l-Wy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~s~kt~~vl~~G~~vlI~s~~iv  338 (344)
T PF06379_consen  261 FCALAGVL-WYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGASKKTIRVLVLGIAVLILSVVIV  338 (344)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHHHHHHH
Confidence            44444443 246667777777777743    3456777888888888886 77733      334468988888887776


Q ss_pred             eec
Q 024838          223 LWG  225 (262)
Q Consensus       223 ~~~  225 (262)
                      -++
T Consensus       339 G~G  341 (344)
T PF06379_consen  339 GYG  341 (344)
T ss_pred             hcc
Confidence            443

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=89.38  E-value=0.4  Score=40.34  Aligned_cols=64  Identities=11%  Similarity=0.095  Sum_probs=55.0

Q ss_pred             hhhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838          161 SSCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW  224 (262)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~  224 (262)
                      |-..+-.+.+.++....++...++.--..+|+.+++.-+++..++..+|+|...+.+|+..+-.
T Consensus        95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~  158 (372)
T KOG3912|consen   95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS  158 (372)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence            3344556777888888888888888888999999999999999999999999999999887653

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=89.09  E-value=0.12  Score=42.83  Aligned_cols=136  Identities=14%  Similarity=0.060  Sum_probs=91.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHHhhhh
Q 024838           83 WLKGSILTVASCILWSSFYIMQAFTLKKYP-AKLSISAWMNCIGAAQSAVYTIIVQPKAAAWSTTSGIDLWCIIYSGAVS  161 (262)
Q Consensus        83 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  161 (262)
                      ..+|..+.-.-.++..........+.++.. .|....+..+..-+++-.+++++..+   ..    ..-|-..+.++++-
T Consensus        16 ~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~---~~----~~~~~hYilla~~D   88 (336)
T KOG2766|consen   16 TLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK---YI----KAKWRHYILLAFVD   88 (336)
T ss_pred             hhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH---HH----HHHHHHhhheeEEe
Confidence            345555554445555555555555566643 46666676666666666666664321   11    11233334444422


Q ss_pred             hhHHHHHHHHHHhhcCceeeeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838          162 SCLNLFIQLWCIEQRGPVFVTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~  226 (262)
                       .=+-++...|.++.+.+.+.++.....+...+++|++++.+..+.++.|.++++.|+.++....
T Consensus        89 -VEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD  152 (336)
T KOG2766|consen   89 -VEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD  152 (336)
T ss_pred             -ecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence             3344455688899999999999999999999999999999999999999999999999977544

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=88.63  E-value=1.3  Score=31.43  Aligned_cols=58  Identities=16%  Similarity=0.159  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhhcCceeeeeh-hchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhh
Q 024838          165 NLFIQLWCIEQRGPVFVTIF-NPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSL  222 (262)
Q Consensus       165 ~~~~~~~~~~~~~~~~~s~~-~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~  222 (262)
                      +-.+|+.-+++.+-+.+..+ +.+.-.|+.+++..+-.|......++|..++++|+++.
T Consensus        65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC  123 (125)
T ss_pred             hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence            33577788888888777665 45677899999998666666888899999999998874

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=88.49  E-value=1.3  Score=31.27  Aligned_cols=46  Identities=13%  Similarity=0.219  Sum_probs=39.0

Q ss_pred             eeehhchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838          181 VTIFNPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       181 ~s~~~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~  226 (262)
                      .+.+.-+..+.+.++.+++-+..|+.+.++|..++++|...+.+..
T Consensus        61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p  106 (109)
T COG1742          61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP  106 (109)
T ss_pred             HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence            3455667788899999999999999999999999999977776653

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=87.76  E-value=0.67  Score=32.86  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=27.9

Q ss_pred             HHHHHHHHHhccccchhhHhHHHHHHHHHhhhe
Q 024838          191 IVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLL  223 (262)
Q Consensus       191 ~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~  223 (262)
                      +-..++.+.++|++++....|.++++.+++.+.
T Consensus        75 vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF  107 (108)
T PF04342_consen   75 VFAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF  107 (108)
T ss_pred             eeHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence            345677889999999999999999999887654

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=87.36  E-value=0.2  Score=36.30  Aligned_cols=47  Identities=17%  Similarity=0.237  Sum_probs=36.5

Q ss_pred             ccchhHHHHhh-hchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHH
Q 024838            3 YVHPTFMTAVV-NTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV   55 (262)
Q Consensus         3 ~~s~~~a~~i~-~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~   55 (262)
                      ..+.+.+..+. .+.=++|++.++++.+|..++++      ++|+.+.++|+.+
T Consensus        64 ~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~------~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   64 SADLSLAVPIANSLAFVFTALTGWLLGEEVISRRT------WLGMALILAGVAL  111 (113)
T ss_pred             cCCceeeehHHhHHHHHHHHHHHHHhcCcccchhH------HHHHHHHHcCeee
Confidence            34555555564 57888999999988877777777      9999999999764

Many members are annotated as potential transmembrane proteins.

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.84  E-value=1.6  Score=30.45  Aligned_cols=36  Identities=17%  Similarity=0.249  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHhccccchhhHhHHHHHHHHHhhhee
Q 024838          189 TVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLW  224 (262)
Q Consensus       189 pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~  224 (262)
                      ..+-+.++.+.++|++.+..+.|..++..|+++..+
T Consensus        80 L~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          80 LAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            344567899999999999999999999999988764

>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []

Probab=86.84  E-value=1.2  Score=33.51  Aligned_cols=16  Identities=25%  Similarity=0.619  Sum_probs=9.5

Q ss_pred             hhHhHHHHHHHHHhhh
Q 024838          207 GCILGGLIVIIGLYSL  222 (262)
Q Consensus       207 ~~~~G~~li~~g~~l~  222 (262)
                      ..++|..+++.|++..
T Consensus        88 ~~i~g~~~~~~G~~~i  103 (136)
T PF08507_consen   88 SIIIGLLLFLVGVIYI  103 (136)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4455666677775553

In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=84.68  E-value=35  Score=31.91  Aligned_cols=19  Identities=5%  Similarity=-0.069  Sum_probs=10.4

Q ss_pred             ehhchHHHHHHHHHHHHhc
Q 024838          183 IFNPLTTVIVAVAAYFLVG  201 (262)
Q Consensus       183 ~~~~~~pv~a~~~~~~~~~  201 (262)
                      ......|+-+.++|.+.-.
T Consensus       351 ~~~g~~~lGsll~G~la~~  369 (524)
T PF05977_consen  351 VFFGGMPLGSLLWGFLADH  369 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444456666666665433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.23
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.83
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.8
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.71

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.23  E-value=5.7e-12  Score=93.92  Aligned_cols=71  Identities=10%  Similarity=0.233  Sum_probs=54.3

Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCceeeeeh-hchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheecc
Q 024838          156 YSGAVSSCLNLFIQLWCIEQRGPVFVTIF-NPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWGK  226 (262)
Q Consensus       156 ~~gi~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~  226 (262)
                      .+++++++++|.+|++++++++++.+..+ ..+.|++++++++++++|++++.+++|++++++|+++....+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            45667889999999999999999999998 899999999999999999999999999999999999987543

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.83  E-value=8.3e-09  Score=74.10  Aligned_cols=70  Identities=10%  Similarity=0.235  Sum_probs=64.1

Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCceeeeeh-hchHHHHHHHHHHHHhccccchhhHhHHHHHHHHHhhheec
Q 024838          156 YSGAVSSCLNLFIQLWCIEQRGPVFVTIF-NPLTTVIVAVAAYFLVGEKLHTGCILGGLIVIIGLYSLLWG  225 (262)
Q Consensus       156 ~~gi~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pv~a~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~  225 (262)
                      ..++++.++++.++.+++|+++.+.+-.+ ..+.|+++.++++++++|++++.+++|.++++.|+++....
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34556778999999999999999999888 79999999999999999999999999999999999998754

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.80  E-value=1.5e-05  Score=59.05  Aligned_cols=52  Identities=17%  Similarity=0.307  Sum_probs=37.5

Q ss_pred             CcccchhHHHHh-hhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHH
Q 024838            1 MKYVHPTFMTAV-VNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF   58 (262)
Q Consensus         1 l~~~s~~~a~~i-~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~   58 (262)
                      +++.+++.+..+ .++.|++++++++++++|++++++      ++|+.+.++|++++..
T Consensus        51 lk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           51 LAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL  103 (137)
T ss_dssp             HC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHH
T ss_pred             HHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence            367788888887 899999999999999999999999      9999999999998865

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.71  E-value=2.2e-05  Score=56.01  Aligned_cols=52  Identities=17%  Similarity=0.307  Sum_probs=46.9

Q ss_pred             CcccchhHHHHh-hhchHHHHHHHHHHHhhhcccccCCCcchhhhhHHHHhHHHHHHHH
Q 024838            1 MKYVHPTFMTAV-VNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF   58 (262)
Q Consensus         1 l~~~s~~~a~~i-~~~~pi~~~ll~~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~~l~~   58 (262)
                      +|+.+.+.+..+ ..+.|++++++++++++|++++++      ++|+.+.++|++++..
T Consensus        51 l~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           51 LAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL  103 (110)
T ss_pred             HHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence            367888899777 799999999999999999999998      9999999999988864

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00