Citrus Sinensis ID: 024843

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MLRKTVNMLGWLYLMTQGLLKVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNKLPLERTKHPTSSSFPL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccEEEEEEEEccccHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLRKTVNMLGWLYLMTQGLLKVLFPLMQweatafgrPVLAIVLIASLAlfpvflipsgpsmwLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVAlfrvspfpytIFNYAIVVTSMRFwpylcgsvagmVPEAFIYIYSGRLIRTLAdvkygnyhMTTVEIVYNIISFIIAVLTIIAFTVYAKRALKELergeangeetststgsgfemnklplertkhptsssfpl
Flexible Loop (DISEMBL)
MLRKTVNMLGWLYLMTQGLLKVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRALKelergeangeetststgsgfemnklplertkhptsssfpl
Low Complexity Region (SEG)
MLRKTVNMLGWLYLMTQGLLKVLFPLMQWEATAFGRPvlaivliaslalFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNKLPLERTKHPTSSSFPL
Disordered region (IsUnstruct)
****TVNMLGWLYLMTQGLLKVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRAL*****************************************
Disordered Region (DISOPRED)
*LRKTVNMLGWLYLMTQGLLKVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKR*******************************************
Disordered Region (DISEMBL)
MLRKTVNMLGWLYLMTQGLLKVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRALKELER*************SGFEMNKLPLER***********
Disordered Region (DISPRO)
MLRKTVNMLGWLYLMTQGLLKVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRALKELERG***********************************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRKTVNMLGWLYLMTQGLLKVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNKLPLERTKHPTSSSFPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
Q55909	209	TVP38/TMEM64 family membr	N/A	no	0.704	0.880	0.286	2e-11
Q6YI46	380	Transmembrane protein 64	yes	no	0.697	0.478	0.258	1e-07
Q3U145	381	Transmembrane protein 64	yes	no	0.708	0.485	0.257	5e-07
A5DH87	349	Golgi apparatus membrane	N/A	no	0.693	0.518	0.238	2e-05
Q6FTI0	323	Golgi apparatus membrane	yes	no	0.609	0.492	0.233	0.0001
A7TMU9	319	Golgi apparatus membrane	N/A	no	0.632	0.517	0.218	0.0002
Q759P7	307	Golgi apparatus membrane	yes	no	0.620	0.527	0.242	0.0002

>sp|Q55909|Y305_SYNY3 TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 15/199 (7%)

Query: 26  LMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGM 85
           L  W A AF    + +  +A++   P  ++  G     AG++FG  LG + + +G T+G 
Sbjct: 15  LGTWAAIAF----MLLYTVATVVFLPGSILTLG-----AGVVFGVILGSIYVFIGATLGA 65

Query: 86  VLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSP-FPYTIFNYA 144
              + VG   R     W+ +        +   E       ++V L R+SP FP+ + NYA
Sbjct: 66  TAAFLVG---RYLARGWVAKKIAGNQKFKAIDEAVGKEGLKIVILTRLSPVFPFNLLNYA 122

Query: 145 IVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYG-NYHMTTVEIVYNIISFI 203
             +T++    Y+ GS+ GM+P   +Y+Y G L  +LA +    N    T++    I+ FI
Sbjct: 123 YGITNVSLKDYVIGSL-GMIPGTIMYVYIGSLAGSLATLGTATNQANPTLQWTIRIVGFI 181

Query: 204 IAVLTIIAFTVYAKRALKE 222
             V   I  T  A++AL E
Sbjct: 182 ATVAVTIYVTKIARKALNE 200

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q6YI46|TMM64_HUMAN Transmembrane protein 64 OS=Homo sapiens GN=TMEM64 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 23/205 (11%)

Query: 53  FLIPSGPSMW-------LAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKR 105
           F++ S P  W        AG ++G+ LG  ++MVG  IG  + + V    +  +  W+  
Sbjct: 167 FIVVSFPCGWGYIVLNVAAGYLYGFVLGMGLMMVGVLIGTFIAHVV---CKRLLTAWVAA 223

Query: 106 WPQQA----AMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVA 161
             Q +    A++R+   GS L   ++VAL R++P P+ + N    +T +    YL  S  
Sbjct: 224 RIQSSEKLSAVIRVVEGGSGL---KVVALARLTPIPFGLQNAVFSITDLSLPNYLMASSV 280

Query: 162 GMVPEAFIYIYSGRLIRTLADV----KYGNYHMTTVEIVYNI-ISFIIAVLTIIAFTVYA 216
           G++P   +  Y G  +RT+ DV        Y +  ++I+ +I + F +     +      
Sbjct: 281 GLLPTQLLNSYLGTTLRTMEDVIAEQSVSGYFVFCLQIIISIGLMFYVVHRAQVELNAAI 340

Query: 217 KRALKELERGEANGEETSTSTGSGF 241
                EL+     G + +TS GS F
Sbjct: 341 VACEMELKSSLVKGNQPNTS-GSSF 364

Homo sapiens (taxid: 9606)

>sp|Q3U145|TMM64_MOUSE Transmembrane protein 64 OS=Mus musculus GN=Tmem64 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 17/202 (8%)

Query: 53  FLIPSGPSMW-------LAGMIFGYGLGFVIIMVGTTIGMVLPYWVG-LLFRDRIHQWLK 104
           F++ S P  W        AG ++G+ LG  +++VG  IG  + + V   L    +   ++
Sbjct: 168 FIVVSFPCGWGYIVLNVAAGYLYGFVLGMGLMVVGVLIGTFIAHVVCKRLLTAWVAARIQ 227

Query: 105 RWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMV 164
              + +A++R+   GS L   ++VAL R++P P+ + N    +T +    YL  S AG++
Sbjct: 228 NSDKLSAVIRVVEGGSGL---KVVALARLTPIPFGLQNAVFSITDVPLPSYLMASSAGLL 284

Query: 165 PEAFIYIYSGRLIRTLADV----KYGNYHMTTVEIVYNI-ISFIIAVLTIIAFTVYAKRA 219
           P   +  Y G  +RT+ DV        Y +  ++IV +I + F +     +         
Sbjct: 285 PTQLLNSYLGTTLRTMEDVIAEQSLSGYFVFCLQIVISIGLMFYVVHRAQVELNAAIVAC 344

Query: 220 LKELERGEANGEETSTSTGSGF 241
             EL+     G ++  S GS F
Sbjct: 345 EMELKTSLVKGNQSDPS-GSSF 365

Mus musculus (taxid: 10090)

>sp|A5DH87|TVP38_PICGU Golgi apparatus membrane protein TVP38 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=TVP38 PE=3 SV=2

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 20/201 (9%)

Query: 63  LAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLF-RDRIHQWLKRWPQQAAMLRLAAEGSW 121
           LAGM++G+  G+ ++   +  G  + + V   F R +  + +    +  A   +  E S 
Sbjct: 115 LAGMVYGFPYGWPLLASASVSGSFVAFLVFRYFLRSQGERLVNSNEKFRAFAEILREDSS 174

Query: 122 LHQFRMVALFRVSPFPYTIFNYAI-VVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTL 180
           L    ++ L R+ P PY++ N A+  +  +  W YL  SV    P+  I+++ G  I+  
Sbjct: 175 LF---LLVLIRLCPLPYSLSNGALAAIPELSAWVYLGASVI-TSPKMLIHLFVGHKIKEF 230

Query: 181 ADVKYGNYHMTTVEIVYNIISFII--AVLTIIAFTVYAKRALK-ELERGEAN------GE 231
            D K      T+ +I+ ++IS ++  A  ++  F +Y K   K    R  AN      G 
Sbjct: 231 GDAKTD----TSTKII-DVISILVTGAAASLTTFIIYRKMQQKLHHNRAGANYDAFVFGN 285

Query: 232 ETSTSTGSGFEMNKLPLERTK 252
                +G+  E+N    ++  
Sbjct: 286 FDDLESGTNVELNSADFDQDN 306

Golgi membrane protein involved in vesicular trafficking and spindle migration.

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

>sp|Q6FTI0|TVP38_CANGA Golgi apparatus membrane protein TVP38 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TVP38 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 99/197 (50%), Gaps = 38/197 (19%)

Query: 64  AGMIFGYGL-GFVIIMVGTTIGMVLPYWVGLLFRDRIH-------QWLKRWPQQAAMLRL 115
            G+I+G    G+ ++ +G+  G V  ++V   F++ +H          KR+   A++L+ 
Sbjct: 148 TGLIYGVSFHGWFVLALGSVTGSVASFYV---FKNLLHSRAEKLVHMNKRFEAFASILQ- 203

Query: 116 AAEGSWLHQFRMVALFRVSPFPYTIFNYAIV----VTSMRFWPYLCGSVAGMV--PEAFI 169
             + S+L    M+AL R+ PFPY++ N AI     ++   F      ++A ++  P+  I
Sbjct: 204 -EDNSYL----MLALLRLCPFPYSLTNGAIAGIYGISVKNF------TIANIITTPKLLI 252

Query: 170 YIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIA--VLTIIAFTVYAKRALKELE-RG 226
           Y++ G  I+ +A+        +T   +++++S +I   + T+ A+ +Y K   +  + + 
Sbjct: 253 YLFIGARIKNMAE------DHSTSSRIFDLVSILITLIIFTLTAWLLYFKTKQRYAQLKN 306

Query: 227 EANGEETSTSTGSGFEM 243
           +A  + +S +    FE+
Sbjct: 307 QAVAQNSSANREVDFEI 323

Golgi membrane protein involved in vesicular trafficking and spindle migration.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|A7TMU9|TVP38_VANPO Golgi apparatus membrane protein TVP38 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TVP38 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 94/188 (50%), Gaps = 23/188 (12%)

Query: 65  GMIFGYGL-GFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLH 123
           G+I+G    G+VI+ +G   G +  +    LF+  +H   ++  Q     R AA  S L 
Sbjct: 144 GLIYGISFKGWVILAIGAVTGSICSF---ALFKTILHSRAEKLIQMNR--RFAAFASILQ 198

Query: 124 QFR---MVALFRVSPFPYTIFNYAI-VVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRT 179
           +     ++AL R+ PFPY++ N A+  V  +    +  G++    P+  IY++ G  I+ 
Sbjct: 199 ENNSYWILALLRLCPFPYSLTNGAVGAVYGVSIKNFAIGNII-TTPKLLIYLFIGSRIKN 257

Query: 180 LADVKYGNYHMTTVEIVYNIISFIIAVLT--IIAFTVYAKRALKELERGEANGEETSTST 237
           + + +      ++   +++++S ++ VL   + A+ +Y     K  +R +   ++++ +T
Sbjct: 258 MGETE------SSASKIFDLVSILLTVLALGLTAWVLY----FKTQKRYQQLQDQSTINT 307

Query: 238 GSGFEMNK 245
            +  ++++
Sbjct: 308 SNDLDIDQ 315

Golgi membrane protein involved in vesicular trafficking and spindle migration.

Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) (taxid: 436907)

>sp|Q759P7|TVP38_ASHGO Golgi apparatus membrane protein TVP38 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TVP38 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 86/177 (48%), Gaps = 15/177 (8%)

Query: 64  AGMIFGYGL-GFVIIMVGTTIGMVLPYWV-GLLFRDRIHQWLKRWPQQAAMLRLAAEGSW 121
           AG+++G    G++II +GT +G +  + V   +FR    + ++   +  A+  +  +   
Sbjct: 138 AGLVYGVSFKGWLIISLGTVLGSIAAFSVFKTVFRSYAERLIRLNDKFEALASILQDH-- 195

Query: 122 LHQFRMVALFRVSPFPYTIFNYAIV-VTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTL 180
            + + ++AL R+ PFPY++ N AI  V  +    +    V    P+ F+Y++ G  ++ L
Sbjct: 196 -NSYWIIALLRLCPFPYSLTNGAIAGVYGISIRNFSIAQVL-TTPKLFMYLFIGSRLKNL 253

Query: 181 ADVKYGNYHMTTVEIVYNIISFIIAV--LTIIAFTVYAKRALKELERGEANGEETST 235
            +        +T   +++I+S + A+  LT  A  +Y K   + LE    N +   T
Sbjct: 254 GESS------STATKLFDILSILFAIIALTATASILYYKTKERYLELQRRNQDRFDT 304

Golgi membrane protein involved in vesicular trafficking and spindle migration.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
255556725	327	conserved hypothetical protein [Ricinus	0.919	0.733	0.813	1e-110
225469876	320	PREDICTED: TVP38/TMEM64 family membrane	0.908	0.740	0.819	1e-110
356522101	320	PREDICTED: Golgi apparatus membrane prot	0.877	0.715	0.811	1e-106
356564440	320	PREDICTED: Golgi apparatus membrane prot	0.904	0.737	0.787	1e-106
356532936	312	PREDICTED: uncharacterized protein LOC10	0.862	0.721	0.808	1e-104
224112833	323	predicted protein [Populus trichocarpa]	0.919	0.743	0.809	1e-103
388520991	314	unknown [Lotus japonicus]	0.862	0.716	0.795	1e-103
363806994	312	uncharacterized protein LOC100792235 [Gl	0.862	0.721	0.795	1e-103
124359825	312	F5O11.19, related [Medicago truncatula]	0.865	0.724	0.792	1e-103
357448293	340	TVP38/TMEM64 family membrane protein slr	0.862	0.661	0.795	1e-103

>gi|255556725|ref|XP_002519396.1| conserved hypothetical protein [Ricinus communis] gi|223541463|gb|EEF43013.1| conserved hypothetical protein [Ricinus communis]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/241 (81%), Positives = 218/241 (90%), Gaps = 1/241 (0%)

Query: 21  KVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG 80
           KVLFP++QWEATAFGRPVLA+VLIASLA+FP+FLIPSGPSMWLAGMIFGYG+GFVIIMVG
Sbjct: 88  KVLFPILQWEATAFGRPVLALVLIASLAVFPIFLIPSGPSMWLAGMIFGYGMGFVIIMVG 147

Query: 81  TTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTI 140
           TTIGM+LPY +GLLFRDRIHQWLKRWPQ+AAM+RLA EGSW HQFR+VALFRVSPFPYTI
Sbjct: 148 TTIGMILPYLIGLLFRDRIHQWLKRWPQKAAMIRLAGEGSWFHQFRVVALFRVSPFPYTI 207

Query: 141 FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNII 200
           FNYAIVVTSMRFWPYLCGS+AGMVPEAFIYIYSGRLIRT ADVKYGN+H+TTVEI+YN+I
Sbjct: 208 FNYAIVVTSMRFWPYLCGSIAGMVPEAFIYIYSGRLIRTFADVKYGNHHLTTVEIIYNVI 267

Query: 201 SFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNKLPLERTKHPTSSSFP 260
           SFIIA++T +AFTVYAKRALKELE  E   E  ++  GS +EM KLPLER      SSF 
Sbjct: 268 SFIIAIITTVAFTVYAKRALKELEGIETTEEVPASHQGS-YEMGKLPLERPAQVGLSSFS 326

Query: 261 L 261
           L
Sbjct: 327 L 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469876|ref|XP_002270145.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305 [Vitis vinifera] gi|297739420|emb|CBI29602.3| unnamed protein product [Vitis vinifera]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/238 (81%), Positives = 214/238 (89%), Gaps = 1/238 (0%)

Query: 21  KVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG 80
           K+L P+M WEATAFGRPVLA VL+ASLALFPV LIPSGPSMWLAGMIFGYGLGFVIIM+G
Sbjct: 84  KILLPIMHWEATAFGRPVLAFVLVASLALFPVLLIPSGPSMWLAGMIFGYGLGFVIIMIG 143

Query: 81  TTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTI 140
           TTIGMVLPY +GLLFRDRIHQWLKRWPQ+AAM+RLA EGSW HQFR+VALFRVSPFPYTI
Sbjct: 144 TTIGMVLPYLIGLLFRDRIHQWLKRWPQKAAMIRLAGEGSWFHQFRVVALFRVSPFPYTI 203

Query: 141 FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNII 200
           FNYAIVVTSM FWPYL GS+AGMVPEAFIYIYSGRLIRTLADV+YGN H+TT+EI+YNII
Sbjct: 204 FNYAIVVTSMTFWPYLWGSIAGMVPEAFIYIYSGRLIRTLADVQYGNQHLTTLEIIYNII 263

Query: 201 SFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNKLPLERTKHPTSSS 258
           SFI+A++T +AFT+YAKRAL EL + E NGEE STS  S FEM KLPLER KH   SS
Sbjct: 264 SFIVAIITTVAFTIYAKRALNEL-KMETNGEEASTSELSSFEMEKLPLERPKHLGFSS 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522101|ref|XP_003529688.1| PREDICTED: Golgi apparatus membrane protein TVP38-like [Glycine max]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/233 (81%), Positives = 209/233 (89%), Gaps = 4/233 (1%)

Query: 21  KVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG 80
           KVL+P+M+WEATAFGRPVLA+VL+ASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG
Sbjct: 85  KVLYPIMEWEATAFGRPVLALVLVASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG 144

Query: 81  TTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTI 140
           TTIGMVLPY +GLLFRDRIHQWLKRWPQ AA++RLA EG+W  QF++VALFRVSPFPYTI
Sbjct: 145 TTIGMVLPYLIGLLFRDRIHQWLKRWPQNAALIRLAGEGNWSRQFQVVALFRVSPFPYTI 204

Query: 141 FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNII 200
           FNYA+VVT+MRFWPYLCGSVAGMVPEAFIYIYSGRLI+TLAD +YG +H+TTVEIVYNII
Sbjct: 205 FNYAVVVTNMRFWPYLCGSVAGMVPEAFIYIYSGRLIKTLADAQYGKHHLTTVEIVYNII 264

Query: 201 SFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNKLPLERTKH 253
           SFIIA++T IAFTVYAKR L EL+  E N E TS S     EM KLPLER K 
Sbjct: 265 SFIIAIVTTIAFTVYAKRTLNELKMAELNDEVTSVSV----EMEKLPLERPKQ 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564440|ref|XP_003550462.1| PREDICTED: Golgi apparatus membrane protein TVP38-like [Glycine max]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/240 (78%), Positives = 211/240 (87%), Gaps = 4/240 (1%)

Query: 20  LKVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMV 79
           +KVL+P+M+WEATAFGRPVLA+VL+ASLALFPVFLIPSGPSMWLAGMIFGYGLGF IIMV
Sbjct: 84  VKVLYPIMEWEATAFGRPVLALVLVASLALFPVFLIPSGPSMWLAGMIFGYGLGFFIIMV 143

Query: 80  GTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYT 139
           GTTIGMVLPY +GLLFRDRIHQWLKRWPQ AAM+RLA EG+W  QF++VALFRVSPFPYT
Sbjct: 144 GTTIGMVLPYLIGLLFRDRIHQWLKRWPQNAAMIRLAGEGNWSRQFQVVALFRVSPFPYT 203

Query: 140 IFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNI 199
           IFNYA+VVT+MRFWPYLCGSVAGMVPEAFIYIYSGRLI+TLAD +YG +H+TTVEIVYNI
Sbjct: 204 IFNYAVVVTNMRFWPYLCGSVAGMVPEAFIYIYSGRLIKTLADAQYGKHHLTTVEIVYNI 263

Query: 200 ISFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNKLPLERTKHPTSSSF 259
           ISFIIA++T IAFTVYAKR L +L+  E N E T  S     EM KLPLER K  + S F
Sbjct: 264 ISFIIAIVTTIAFTVYAKRTLNQLKMAELNDEVTFVSV----EMEKLPLERPKQLSLSKF 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532936|ref|XP_003535025.1| PREDICTED: uncharacterized protein LOC100800730 [Glycine max]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/225 (80%), Positives = 203/225 (90%)

Query: 21  KVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG 80
           KVL+P+M+WEATAFGRPVLA+VL+ASLALFPVF IPSGPSMWLAGMIFGYGLGFVIIMVG
Sbjct: 85  KVLYPIMEWEATAFGRPVLALVLVASLALFPVFFIPSGPSMWLAGMIFGYGLGFVIIMVG 144

Query: 81  TTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTI 140
           TTIGMVLPY +GL+FRDRIHQWLKRWP+ AAM+RLA EGSW HQF++VALFRVSPFPYTI
Sbjct: 145 TTIGMVLPYLIGLIFRDRIHQWLKRWPKNAAMIRLAGEGSWFHQFQVVALFRVSPFPYTI 204

Query: 141 FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNII 200
           FNYA+VVT+MRFWPYLCGS+AGMVPEAFIYIYSGRLIRTLAD +YG + +TTVEI+YNII
Sbjct: 205 FNYAVVVTNMRFWPYLCGSIAGMVPEAFIYIYSGRLIRTLADAQYGKHQLTTVEIIYNII 264

Query: 201 SFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNK 245
           SFI+AV+T IAFTVYAKR L EL+  EAN E  S S  S  EM K
Sbjct: 265 SFIVAVVTTIAFTVYAKRTLNELKIAEANEEAASVSGSSNLEMGK 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112833|ref|XP_002332702.1| predicted protein [Populus trichocarpa] gi|222832956|gb|EEE71433.1| predicted protein [Populus trichocarpa]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/241 (80%), Positives = 215/241 (89%), Gaps = 1/241 (0%)

Query: 21  KVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG 80
           KVL P+M+WEATAFGRPVL++VL ASLALFPVFLIPSGPSMWLAGMIFGYG+GFVIIMVG
Sbjct: 84  KVLLPMMEWEATAFGRPVLSLVLTASLALFPVFLIPSGPSMWLAGMIFGYGIGFVIIMVG 143

Query: 81  TTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTI 140
           TTIGMVLPY +GL+FRDRIHQWLKRWPQ+A+M+RLA EGSW HQF++VA+FRVSPFPYTI
Sbjct: 144 TTIGMVLPYLIGLVFRDRIHQWLKRWPQKASMIRLAGEGSWFHQFKVVAIFRVSPFPYTI 203

Query: 141 FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNII 200
           FNYAIVVTSMRFWPYL GSV+GMVPEAFIYIYSGRLIRT ADVKYGNYH+TTVEI+YNII
Sbjct: 204 FNYAIVVTSMRFWPYLWGSVSGMVPEAFIYIYSGRLIRTFADVKYGNYHLTTVEIIYNII 263

Query: 201 SFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNKLPLERTKHPTSSSFP 260
           SFIIA++T +AFT+YAKRALKELER EA  EE   S     EM KLPLER K    SSF 
Sbjct: 264 SFIIAIVTTVAFTIYAKRALKELERAEAT-EEVPPSHQESHEMGKLPLERPKRAGLSSFS 322

Query: 261 L 261
           L
Sbjct: 323 L 323

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520991|gb|AFK48557.1| unknown [Lotus japonicus]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/225 (79%), Positives = 200/225 (88%)

Query: 21  KVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG 80
           K+L+P M+WEATAFGRP LA+VL+ASLALFPV L PSGPSMWLAGMIFGYGLGFVIIMVG
Sbjct: 87  KILYPTMEWEATAFGRPALALVLVASLALFPVILFPSGPSMWLAGMIFGYGLGFVIIMVG 146

Query: 81  TTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTI 140
           TTIGMVLPY +GLLFRDRIHQWLK+WPQ A M+RLA EGSW HQF+MVALFR+SPFPYTI
Sbjct: 147 TTIGMVLPYLIGLLFRDRIHQWLKKWPQNAEMIRLAGEGSWFHQFQMVALFRISPFPYTI 206

Query: 141 FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNII 200
           FNYAIVVT+MRFWPYLCGS+AGMVPEAF+YIYSGRLIRTLAD +YG +H+TTVEIVYNII
Sbjct: 207 FNYAIVVTNMRFWPYLCGSIAGMVPEAFLYIYSGRLIRTLADAQYGKHHLTTVEIVYNII 266

Query: 201 SFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNK 245
           SFIIAV+TI+ FTVYAKR L EL+  EAN E  S S  +  E+ K
Sbjct: 267 SFIIAVVTIVGFTVYAKRTLNELKMAEANEEAASVSGNASLEIEK 311

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806994|ref|NP_001242573.1| uncharacterized protein LOC100792235 [Glycine max] gi|255639939|gb|ACU20262.1| unknown [Glycine max]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/225 (79%), Positives = 200/225 (88%)

Query: 21  KVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG 80
           KVL+P+M+WEAT FGRPVLA+VL+ASLALFPVF IPSGPSMWLAGMIFGYGLGFVIIM+G
Sbjct: 85  KVLYPIMEWEATTFGRPVLALVLVASLALFPVFFIPSGPSMWLAGMIFGYGLGFVIIMIG 144

Query: 81  TTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTI 140
           TTIGMVLPY +GL+FRDRIHQWLKRWP+ AAM+RLA EGSW HQF++VALFRVSPFPYT 
Sbjct: 145 TTIGMVLPYLIGLIFRDRIHQWLKRWPKNAAMIRLAGEGSWFHQFQVVALFRVSPFPYTT 204

Query: 141 FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNII 200
           FNYA+VVT+MRFWPYLCGS+AGMVPEAFIYIYSGRLIRTLAD +YG + +TTVEIVYNII
Sbjct: 205 FNYAVVVTNMRFWPYLCGSIAGMVPEAFIYIYSGRLIRTLADAQYGKHQLTTVEIVYNII 264

Query: 201 SFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNK 245
           SFI+AV+T IAFTVYAKR L EL+  EAN E  S S     EM K
Sbjct: 265 SFIVAVVTTIAFTVYAKRTLNELKIAEANQEAASVSESGNLEMEK 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359825|gb|ABD32921.2| F5O11.19, related [Medicago truncatula]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/226 (79%), Positives = 201/226 (88%)

Query: 21  KVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG 80
           KVL+P+M+WEATAFGRPVLA+VLIASLALFPV LIPSGPSMWLAGMIFGYGLGFVIIMVG
Sbjct: 85  KVLYPVMEWEATAFGRPVLALVLIASLALFPVLLIPSGPSMWLAGMIFGYGLGFVIIMVG 144

Query: 81  TTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTI 140
           TTIGMVLPY +GL FRDRIHQWL++WPQ AAM+RLA EGSW HQF++VALFR SPFPYTI
Sbjct: 145 TTIGMVLPYLIGLKFRDRIHQWLEKWPQNAAMIRLAGEGSWFHQFQVVALFRTSPFPYTI 204

Query: 141 FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNII 200
           FNYA+VVT M+FWPY CGSVAGMVPEAFIYIYSGRLI++LAD +YG +HMTTVEIVYNII
Sbjct: 205 FNYAVVVTDMKFWPYFCGSVAGMVPEAFIYIYSGRLIKSLADAQYGRHHMTTVEIVYNII 264

Query: 201 SFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNKL 246
           SFIIAV+TI+ FTVYAKR L +L+  EAN E  S S  +  EM K+
Sbjct: 265 SFIIAVITIVGFTVYAKRTLNKLKIAEANEEAASVSGNASLEMKKV 310

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448293|ref|XP_003594422.1| TVP38/TMEM64 family membrane protein slr0305 [Medicago truncatula] gi|355483470|gb|AES64673.1| TVP38/TMEM64 family membrane protein slr0305 [Medicago truncatula]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/225 (79%), Positives = 200/225 (88%)

Query: 21  KVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG 80
           KVL+P+M+WEATAFGRPVLA+VLIASLALFPV LIPSGPSMWLAGMIFGYGLGFVIIMVG
Sbjct: 92  KVLYPVMEWEATAFGRPVLALVLIASLALFPVLLIPSGPSMWLAGMIFGYGLGFVIIMVG 151

Query: 81  TTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTI 140
           TTIGMVLPY +GL FRDRIHQWL++WPQ AAM+RLA EGSW HQF++VALFR SPFPYTI
Sbjct: 152 TTIGMVLPYLIGLKFRDRIHQWLEKWPQNAAMIRLAGEGSWFHQFQVVALFRTSPFPYTI 211

Query: 141 FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNII 200
           FNYA+VVT M+FWPY CGSVAGMVPEAFIYIYSGRLI++LAD +YG +HMTTVEIVYNII
Sbjct: 212 FNYAVVVTDMKFWPYFCGSVAGMVPEAFIYIYSGRLIKSLADAQYGRHHMTTVEIVYNII 271

Query: 201 SFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNK 245
           SFIIAV+TI+ FTVYAKR L +L+  EAN E  S S  +  EM K
Sbjct: 272 SFIIAVITIVGFTVYAKRTLNKLKIAEANEEAASVSGNASLEMKK 316

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2056246	320	AT2G02370 "AT2G02370" [Arabido	0.892	0.728	0.735	1e-91
TAIR|locus:2132669	296	AT4G22850 "AT4G22850" [Arabido	0.835	0.736	0.438	1.5e-51
TAIR|locus:2118096	306	AT4G12000 [Arabidopsis thalian	0.816	0.696	0.449	9.5e-50
TAIR|locus:2034710	303	AT1G12450 "AT1G12450" [Arabido	0.781	0.673	0.431	3.7e-48
TAIR|locus:2014530	274	AT1G03260 [Arabidopsis thalian	0.693	0.660	0.276	4.7e-16
TAIR|locus:2179654	280	AT5G19070 [Arabidopsis thalian	0.750	0.7	0.273	2.6e-15
TAIR|locus:2017769	344	AT1G22850 "AT1G22850" [Arabido	0.655	0.497	0.261	1.5e-10
GENEDB_PFALCIPARUM|MAL13P1.329	408	MAL13P1.329 "hypothetical prot	0.605	0.387	0.279	1.1e-09
UNIPROTKB|Q8ID52	408	MAL13P1.329 "Uncharacterized p	0.605	0.387	0.279	1.1e-09
UNIPROTKB|Q6YI46	380	TMEM64 "Transmembrane protein	0.731	0.502	0.263	1.3e-09

TAIR|locus:2056246 AT2G02370 "AT2G02370" [Arabidopsis thaliana (taxid:3702)]

 Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
 Identities = 172/234 (73%), Positives = 194/234 (82%)

Query:    21 KVLFPLMQWEATAFGRPXXXXXXXXXXXXFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG 80
             KVL P++QWEATAFGRP            FPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG
Sbjct:    83 KVLIPILQWEATAFGRPMLAIVLVVSLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG 142

Query:    81 TTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTI 140
             TTIGMVLPY +GL+FRDR+HQWLKRWP+QAA+LRLAAEGSW HQFR+VA+FRVSPFPYTI
Sbjct:   143 TTIGMVLPYLIGLMFRDRLHQWLKRWPRQAAVLRLAAEGSWFHQFRVVAIFRVSPFPYTI 202

Query:   141 FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNII 200
             FNYAIVVTSMRFWPY  GS+AGM+PEAFIYIYSGRLIRT ADV+YG+  +TTVEIVYN+I
Sbjct:   203 FNYAIVVTSMRFWPYFFGSIAGMIPEAFIYIYSGRLIRTFADVQYGHQRLTTVEIVYNVI 262

Query:   201 SFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEM-NKLPLERTKH 253
             S +IAV+T +AFTVYAKRAL+EL+  EAN +E        FEM N +  E   H
Sbjct:   263 SLVIAVVTTVAFTVYAKRALRELQNAEANEDEEVQVRKVRFEMKNVVQHEEDNH 316

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132669 AT4G22850 "AT4G22850" [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 96/219 (43%), Positives = 142/219 (64%)

Query:     8 MLGWLYLMTQGLLKVLFPLMQWEATAFGRPXXXXXXXXXXXXFPVFLIPSGPSMWLAGMI 67
             ++G++++    + K L PL+QWE   F  P            FP  L+PS PSMW+AGM 
Sbjct:    71 VVGYIWIGPLIMDKELIPLIQWEIRTFTHPVCGLLVFASVAIFPTILLPSTPSMWIAGMT 130

Query:    68 FGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRM 127
             FGYG GF++I+    +G+ LPY++G LF  +I  WL+R+P QAA+LR A EG+WLHQF +
Sbjct:   131 FGYGYGFLLIISAAAVGVSLPYFIGQLFCHKIQGWLERYPDQAAVLRAAGEGNWLHQFLL 190

Query:   128 VALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGN 187
             V L R+SPFPY ++NY  V T +++ PY+ GS+ GMVPE F+ IY+G L+RTLA+     
Sbjct:   191 VTLIRISPFPYILYNYCSVATRVKYGPYITGSLLGMVPEVFVAIYTGILVRTLAEASSAE 250

Query:   188 YH-MTTVEIVYNIISFIIAVLTIIAFTVYAKRALKELER 225
                ++  +++ NI+ F+  V T I  T YAKR L+ +++
Sbjct:   251 EQGLSVTQVILNILGFLATVATTILITKYAKRQLETMKK 289

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118096 AT4G12000 [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 97/216 (44%), Positives = 134/216 (62%)

Query:    11 WLYLMTQGLLKVLFPLMQWEATAFGRPXXXXXXXXXXXXFPVFLIPSGPSMWLAGMIFGY 70
             WLY +     K L PL++WE   F  P            FPV LIP+ PSMW+AG+ FGY
Sbjct:    85 WLYPLIMD--KELIPLIKWEMETFTHPVCGILVFASVSLFPVILIPTTPSMWVAGITFGY 142

Query:    71 GLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVAL 130
               G ++ +    IG+ LPY++  LF ++I  WL+R+P QAAMLR A  GSW HQFR V L
Sbjct:   143 FYGLLLTLPAVAIGVSLPYFISYLFLNKIQGWLERYPDQAAMLRAAGGGSWFHQFRAVTL 202

Query:   131 FRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYH- 189
              R+SPFP+ ++NY  V T ++F PY+ GS+ GM PE F+ IY+G LIRTLAD        
Sbjct:   203 IRISPFPFAVYNYCAVATRVKFGPYMAGSLVGMAPEIFVAIYTGILIRTLADASTAEQKG 262

Query:   190 MTTVEIVYNIISFIIAVLTIIAFTVYAKRALKELER 225
             ++ ++IV NI  F+  V+T +  T YAKR L+ +++
Sbjct:   263 LSILQIVLNIFGFVATVVTTVLITKYAKRQLEVMKK 298

GO:0005886 "plasma membrane" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2034710 AT1G12450 "AT1G12450" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 88/204 (43%), Positives = 129/204 (63%)

Query:    21 KVLFPLMQWEATAFGRPXXXXXXXXXXXXFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG 80
             K L P + W    F  P            FP  L+PS PSMW+AG+ FGYG GF++I+  
Sbjct:    87 KELIPFINWVRNTFSIPVLGLLLFASVALFPSILLPSSPSMWMAGLTFGYGKGFLLILSA 146

Query:    81 TTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTI 140
              +IG+ LP+ +G LF  ++ +WLK++P++AA+LR A EG+W HQF+ V L RVSPFPY I
Sbjct:   147 ASIGVTLPFLIGHLFLHKMQEWLKKYPKKAAILRAAGEGTWFHQFQAVTLIRVSPFPYII 206

Query:   141 FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNII 200
             +NY  + T + + PY+ GS+ GMVPE F+ IY+G ++RTLA      + ++ VEIV N++
Sbjct:   207 YNYCALATGVHYGPYILGSLVGMVPEIFVSIYTGIMLRTLAVASDTRHTLSVVEIVVNVL 266

Query:   201 SFIIAVLTIIAFTVYAKRALKELE 224
              F +     I  T+YAK+ L  ++
Sbjct:   267 GFCVTASATIVCTIYAKKKLSAMQ 290

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014530 AT1G03260 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 53/192 (27%), Positives = 98/192 (51%)

Query:    52 VFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVG-LLFRDRIHQWLKRWPQ-Q 109
             +  +P+       G +FG  +GFV   +G T+G    + +G  + +  +   +K +P+ Q
Sbjct:    64 IVAVPASVLTLGGGYLFGLPVGFVADSLGATLGATAAFLLGRTIGKSYVTSKIKHYPKFQ 123

Query:   110 AAMLRLAAEGSWLHQFRMVALFRVSPF-PYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAF 168
             A  + +   G     F++V L RV P  P+ + NY + VT +R   Y+  +  GM+P  F
Sbjct:   124 AVSVAIQKSG-----FKIVLLLRVVPILPFNMLNYLLSVTPVRLGEYMLATWLGMMPITF 178

Query:   169 IYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRAL-KEL-ERG 226
               +Y G  ++ L+D+ +G + ++    V  ++   +AV+ II  T  AK +L K L E G
Sbjct:   179 ALVYVGTTLKDLSDITHGWHEVSVFRWVIMMVGVALAVILIICITRVAKSSLDKALAENG 238

Query:   227 -EANGEETSTST 237
              E +G++   ++
Sbjct:   239 TELDGKKNDDAS 250

GO:0005886 "plasma membrane" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2179654 AT5G19070 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 56/205 (27%), Positives = 95/205 (46%)

Query:    21 KVLFPLMQWEATAFGRPXXXXXXXXXXXXFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVG 80
             K+L   + W     G P              V  +P+       G +FG  +GFV   VG
Sbjct:    32 KLLKDFLLWVEQDLG-PWGPFALAVAYIPLTVLAVPASVLTLGGGYLFGLPIGFVADSVG 90

Query:    81 TTIGMVLPYWVG-LLFRDRIHQWLKRWPQ-QAAMLRLAAEGSWLHQFRMVALFRVSPF-P 137
              T+G    + +G  + +  +   LK +PQ Q+  L +   G     F++  L R++P  P
Sbjct:    91 ATLGSGAAFLLGRTIGKPFVVAKLKDYPQFQSVALAIEKSG-----FKICLLLRLAPLLP 145

Query:   138 YTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVY 197
             +++ NY + VT +R  PYL  S  GM+P     +Y G  ++ L+DV +     +     +
Sbjct:   146 FSMLNYLLSVTPIRLGPYLLSSWLGMMPITLALVYVGTTLKDLSDVTHKWSEFSPGRWAF 205

Query:   198 NIISFIIAVLTIIAFTVYAKRALKE 222
              I S +I+V+ ++  T  AK AL++
Sbjct:   206 LISSLVISVILMVCVTKVAKDALRK 230

GO:0005886 "plasma membrane" evidence=ISM

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2017769 AT1G22850 "AT1G22850" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 47/180 (26%), Positives = 93/180 (51%)

Query:    52 VFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLF-RDRIHQWLKRWPQQA 110
             +  IP+ P    AG++FG  +G +I+ +  T+   + + +   F R+RI + ++   +  
Sbjct:   165 ILAIPALPLTMSAGLLFGPLIGTIIVSISGTMAASVAFLIARYFARERILKLVEDNKKFL 224

Query:   111 AMLRLAAEGSWLHQFRMVALFRVSPF-PYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFI 169
             A+ +   E      FR+V L R+SP  P+++ NY   +TS++F PY+ GS  GM+P ++ 
Sbjct:   225 AIDKAIGENG----FRVVTLLRLSPLLPFSLGNYLYGLTSVKFVPYVLGSWLGMLPGSWA 280

Query:   170 YIYSGRLIRTLADVKYGNYHMT--TVEIVYNIISFIIAVLTIIAFTVYAKRALKELERGE 227
             Y+ +G   R +   +  N  +     +++   +  ++  L     T  AK A+K+++  E
Sbjct:   281 YVSAGAFGRAIIQEE-SNVGLPGGNGQLLTLGVGLLVTALAGTYVTSLAKDAIKDIDDDE 339

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GENEDB_PFALCIPARUM|MAL13P1.329 MAL13P1.329 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 161 (61.7 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 48/172 (27%), Positives = 92/172 (53%)

Query:    58 GPSMWLAGMIFGYGLG-FVIIM---VGTTIGMVLPYWVG-LLFRDRIHQWLKRWPQQAAM 112
             G  +  +G ++G  LG FV +    VG  +GM L +++   L  + I++ L  +P   A 
Sbjct:   230 GSGLIFSG-VYGKALGIFVAVFSVAVGYVLGMSLCFFISRYLIHNYIYKKLMGYPIYMAF 288

Query:   113 LRLAAEGSWLHQFRMVALFRVSPF-PYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYI 171
              + A   + L     V L R+SP  P ++ +Y + VTS+++  +  GS++ + P  F+++
Sbjct:   289 NQ-AINTNGLS---FVLLIRLSPILPASVVSYILGVTSLKYKHFAIGSISAL-PSIFLFV 343

Query:   172 YSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRALKEL 223
             Y G L++ ++++     H T + I++  + F+I V+ I+  +V  KR L  L
Sbjct:   344 YIGVLLQDISNLSELENHWTNLIILF--VGFLIGVIAIVYISVITKRRLNNL 393

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q8ID52 MAL13P1.329 "Uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 161 (61.7 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 48/172 (27%), Positives = 92/172 (53%)

Query:    58 GPSMWLAGMIFGYGLG-FVIIM---VGTTIGMVLPYWVG-LLFRDRIHQWLKRWPQQAAM 112
             G  +  +G ++G  LG FV +    VG  +GM L +++   L  + I++ L  +P   A 
Sbjct:   230 GSGLIFSG-VYGKALGIFVAVFSVAVGYVLGMSLCFFISRYLIHNYIYKKLMGYPIYMAF 288

Query:   113 LRLAAEGSWLHQFRMVALFRVSPF-PYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYI 171
              + A   + L     V L R+SP  P ++ +Y + VTS+++  +  GS++ + P  F+++
Sbjct:   289 NQ-AINTNGLS---FVLLIRLSPILPASVVSYILGVTSLKYKHFAIGSISAL-PSIFLFV 343

Query:   172 YSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRALKEL 223
             Y G L++ ++++     H T + I++  + F+I V+ I+  +V  KR L  L
Sbjct:   344 YIGVLLQDISNLSELENHWTNLIILF--VGFLIGVIAIVYISVITKRRLNNL 393

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q6YI46 TMEM64 "Transmembrane protein 64" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 55/209 (26%), Positives = 96/209 (45%)

Query:    53 FLIPSGPSMW-------LAGMIFGYGLGFVIIMVGTTIGMVLPYWV-GLLFRDRIHQWLK 104
             F++ S P  W        AG ++G+ LG  ++MVG  IG  + + V   L    +   ++
Sbjct:   167 FIVVSFPCGWGYIVLNVAAGYLYGFVLGMGLMMVGVLIGTFIAHVVCKRLLTAWVAARIQ 226

Query:   105 RWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMV 164
                + +A++R+   GS L   ++VAL R++P P+ + N    +T +    YL  S  G++
Sbjct:   227 SSEKLSAVIRVVEGGSGL---KVVALARLTPIPFGLQNAVFSITDLSLPNYLMASSVGLL 283

Query:   165 PEAFIYIYSGRLIRTLADV----KYGNYHMTTVEIVYNI-ISFIIAVLTIIAFTVYAKRA 219
             P   +  Y G  +RT+ DV        Y +  ++I+ +I + F +     +         
Sbjct:   284 PTQLLNSYLGTTLRTMEDVIAEQSVSGYFVFCLQIIISIGLMFYVVHRAQVELNAAIVAC 343

Query:   220 LKELERGEANGEETSTSTGSGFEMNKLPL 248
               EL+     G + +TS GS F  NK  L
Sbjct:   344 EMELKSSLVKGNQPNTS-GSSF-YNKRTL 370

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00011360001 SubName- Full=Chromosome undetermined scaffold_301, whole genome shotgun sequence; (320 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
pfam09335	123	pfam09335, SNARE_assoc, SNARE associated Golgi pro	2e-14
COG0398	223	COG0398, COG0398, Uncharacterized conserved protei	5e-12
COG0586	208	COG0586, DedA, Uncharacterized membrane-associated	3e-05

>gnl|CDD|220186 pfam09335, SNARE_assoc, SNARE associated Golgi protein

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 1/123 (0%)

Query: 55  IPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLR 114
           +P    +  AG +FG  LGF++ ++G  +G +L Y +G     R  +      +    L+
Sbjct: 1   LPGTVLLIAAGALFGPWLGFLVALLGALLGSLLAYLLGRYLGRRALRRRLLKEKAFQRLQ 60

Query: 115 LAAEGSWLHQFRMVALFRVSPF-PYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYS 173
                   + F+ + L R+ P  P  + NY   ++ + F  +L G+  G++P A +Y+Y 
Sbjct: 61  RVERLVERYGFKALLLLRLLPGVPRDLVNYVAGLSRVSFRRFLLGTFLGILPWALLYVYL 120

Query: 174 GRL 176
           G L
Sbjct: 121 GSL 123

This is a family of SNARE associated Golgi proteins. The yeast member of this family localises with the t-SNARE Tlg2. Length = 123

>gnl|CDD|223475 COG0398, COG0398, Uncharacterized conserved protein [Function unknown]

 Score = 63.1 bits (154), Expect = 5e-12
 Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 18/185 (9%)

Query: 41  IVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVG-LLFRDRI 99
           +  I    +  + +IP        G++FG  LGF+  ++G T G  L + +   L RD +
Sbjct: 52  VFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDWV 111

Query: 100 HQWLKRWPQ-QAAMLRLAAEGSWLHQFRMVALFRVSP-FPYTIFNYAIVVTSMRFWPYLC 157
            +++    + Q     L   G W      + L R+ P FP+ + NYA  +T + F  +  
Sbjct: 112 LKFVGGKEKVQRIDAGLERNGFWA-----ILLLRLIPIFPFDLVNYAAGLTGISFRDFAI 166

Query: 158 GSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAK 217
            ++ G +P   +Y Y G        +  G+  +  V     +   I+ V  I+A     +
Sbjct: 167 ATLLGKLPGTIVYTYLGSAF-----LGIGSPLLLLV-----LALLILGVFAIVAKRKELR 216

Query: 218 RALKE 222
           R  ++
Sbjct: 217 RHKRK 221

Length = 223

>gnl|CDD|223659 COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 34/201 (16%), Positives = 74/201 (36%), Gaps = 15/201 (7%)

Query: 30  EATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMI-----FGYGLGFVIIMVGTTIG 84
           +  + G   + ++L     L     +P    + LAG +         L  ++  +G  +G
Sbjct: 11  QEGSLGYLGVFLILFLESGLLVGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLG 70

Query: 85  MVLPYWVGLLFRDRI--HQWLKRWPQQAAMLRLAAEGSWLHQ--FRMVALFRVSPFPYTI 140
            ++ YW+G  F  ++    W  R  ++    +L        +     + L R  P   T+
Sbjct: 71  DLISYWIGRRFGRKLLRKLWSYRLLKRK---KLDKAELLFERHGLFAIFLGRFIPGVRTL 127

Query: 141 FNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNII 200
                 ++ M    +L  ++ G +  A +    G L+  + DV         V +   ++
Sbjct: 128 VPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEVIDVLVHLLL---VLLGILVL 184

Query: 201 SFIIAVLTIIAFTVYAKRALK 221
           + ++ VL +       +R  K
Sbjct: 185 AVLVLVLLLALLWWLRRRKKK 205

Length = 208

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
COG0398	223	Uncharacterized conserved protein [Function unknow	99.96
COG0586	208	DedA Uncharacterized membrane-associated protein [	99.87
PF09335	123	SNARE_assoc: SNARE associated Golgi protein; Inter	99.85
PRK10847	219	hypothetical protein; Provisional	99.84
COG1238	161	Predicted membrane protein [Function unknown]	99.61
KOG3140	275	consensus Predicted membrane protein [Function unk	99.52
PF06695	121	Sm_multidrug_ex: Putative small multi-drug export	95.09
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	93.73
TIGR02359	160	thiW thiW protein. Levels of thiamine pyrophosphat	89.59
PRK01844	72	hypothetical protein; Provisional	86.03
PRK00523	72	hypothetical protein; Provisional	81.28

>COG0398 Uncharacterized conserved protein [Function unknown]

Probab=99.96  E-value=6.7e-28  Score=210.10  Aligned_cols=153  Identities=24%  Similarity=0.420  Sum_probs=133.8

Q ss_pred             hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HhHH
Q 024843           19 LLKVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGL-LFRD   97 (261)
Q Consensus        19 ~~~~l~~~~~w~~~~~g~~~~~i~~~~~~~~~p~~~iP~~~l~~~aG~lfG~~~g~~~~~~g~~lG~~i~f~igR-~~~~   97 (261)
                      ..+..+.+++|++++ |.+...+.+++.+...++.++|++++.+++|++||+++|++++++|+++|+.++|+++| ++||
T Consensus        31 ~~~~~~~l~~~i~~~-g~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~  109 (223)
T COG0398          31 LLLDPETLREWIQAY-GALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRD  109 (223)
T ss_pred             hccCHHHHHHHHHHc-CchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            445567899999987 43333333677777777778899999999999999999999999999999999999999 7899


Q ss_pred             HHHHHHhhchHHHHHHHHHHcCcchhhhHHHHHhhccc-cchhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHHHHHHH
Q 024843           98 RIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSP-FPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRL  176 (261)
Q Consensus        98 ~i~~~l~~~~~~~~~~~~~~~~~~~~g~~~v~l~Rl~P-iP~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~~  176 (261)
                      +.++..+++++.+++++..+++    |++.+++.|++| +|++++||++|++++++++|.++|.+|++|.+++|+++|+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~----g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~~  185 (223)
T COG0398         110 WVLKFVGGKEKVQRIDAGLERN----GFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGSA  185 (223)
T ss_pred             HHHHHhcccHHHHHHHHHHHhC----ChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            9998888777777777777654    789999999999 79999999999999999999999999999999999999973

>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]

Probab=99.87  E-value=1.8e-20  Score=162.15  Aligned_cols=155  Identities=19%  Similarity=0.247  Sum_probs=124.9

Q ss_pred             HHHHHHHHh-hcchHHHHHHHHHHHhhhccccCChHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHH-hH
Q 024843           24 FPLMQWEAT-AFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIFGY-----GLGFVIIMVGTTIGMVLPYWVGLL-FR   96 (261)
Q Consensus        24 ~~~~~w~~~-~~g~~~~~i~~~~~~~~~p~~~iP~~~l~~~aG~lfG~-----~~g~~~~~~g~~lG~~i~f~igR~-~~   96 (261)
                      ++...+.++ .+++...+++.++|...+...++|++++.+++|++-+.     +..++.+.+|+++|+.+.|++||+ ++
T Consensus         4 ~~~~~~~~~~~~~~~~~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~   83 (208)
T COG0586           4 ELLILWIQEGSLGYLGVFLILFLESGLLVGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGR   83 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcH
Confidence            344455444 45677888888999866666667999999999999753     567799999999999999999994 56


Q ss_pred             HHHHHHHhh----chHHHHHHHHHHcCcchhhhHHHHHhhccccchhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHHH
Q 024843           97 DRIHQWLKR----WPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIY  172 (261)
Q Consensus        97 ~~i~~~l~~----~~~~~~~~~~~~~~~~~~g~~~v~l~Rl~PiP~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~  172 (261)
                      +..+++.+.    .++.++-++..++    ||.+.++++||+|.-++++++.+|+++||+++|.+.+++|.+.|..++++
T Consensus        84 ~~l~~~~~~~~~~~~~l~~a~~~f~r----~G~~~vf~~RFip~vRt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~  159 (208)
T COG0586          84 KLLRKLWSYRLLKRKKLDKAELLFER----HGLFAIFLGRFIPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTL  159 (208)
T ss_pred             HHHHhhhhhccCCHHHHHHHHHHHHH----cCchhhhhhcccchhHhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHH
Confidence            666665542    2223333444443    68999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 024843          173 SGRLIRTLAD  182 (261)
Q Consensus       173 ~G~~l~~~~~  182 (261)
                      +|..+++..+
T Consensus       160 lGy~~G~~~~  169 (208)
T COG0586         160 LGYLLGEVID  169 (208)
T ss_pred             HHHHhccchH
Confidence            9999987544

>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins

Probab=99.85  E-value=2.2e-20  Score=147.30  Aligned_cols=120  Identities=28%  Similarity=0.494  Sum_probs=101.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-hHHHHHHHHhhchHHHHHHHHHHcCcchhhhHHHHHhhc
Q 024843           55 IPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLL-FRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRV  133 (261)
Q Consensus        55 iP~~~l~~~aG~lfG~~~g~~~~~~g~~lG~~i~f~igR~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~g~~~v~l~Rl  133 (261)
                      +|++++++++|+++|++.+++++.+|+++|+.++|++||. +++..++...++++.+++++..+. ..++|.+.+++.|+
T Consensus         1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~l~~~~~   79 (123)
T PF09335_consen    1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERW-FQKYGFWVLFLSRF   79 (123)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH-HhhhhHHHHHHHHH
Confidence            5999999999999999999999999999999999999994 446666555544444443333221 11258899999999


Q ss_pred             cc-cchhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHHHHHH
Q 024843          134 SP-FPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGR  175 (261)
Q Consensus       134 ~P-iP~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~  175 (261)
                      +| +|++++|+++|++++++++|+.++++|.+|++.+++++|+
T Consensus        80 ~P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~  122 (123)
T PF09335_consen   80 IPGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGY  122 (123)
T ss_pred             HHHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99 6999999999999999999999999999999999999996

The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].

>PRK10847 hypothetical protein; Provisional

Probab=99.84  E-value=1.2e-19  Score=158.06  Aligned_cols=150  Identities=16%  Similarity=0.278  Sum_probs=114.7

Q ss_pred             HHHHHHhhcch---HHHHHHHHHHHhhhccccCChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHH-H
Q 024843           26 LMQWEATAFGR---PVLAIVLIASLALFPVFLIPSGPSMWLAGMIFG-------YGLGFVIIMVGTTIGMVLPYWVGL-L   94 (261)
Q Consensus        26 ~~~w~~~~~g~---~~~~i~~~~~~~~~p~~~iP~~~l~~~aG~lfG-------~~~g~~~~~~g~~lG~~i~f~igR-~   94 (261)
                      +.++++++ |+   +.++++.++|..+.+..++|++.+.+++|++.+       .+..++++++|+++|+.++|++|| .
T Consensus        18 ~~~~~~~~-g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~   96 (219)
T PRK10847         18 LAELVAQY-GVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLF   96 (219)
T ss_pred             HHHHHHHh-hHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556654 43   346666666764445555799999999998875       245678999999999999999999 5


Q ss_pred             hHHHHHHHHhh---chHHHHHHHHHHcCcchhhhHHHHHhhccccchhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHH
Q 024843           95 FRDRIHQWLKR---WPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYI  171 (261)
Q Consensus        95 ~~~~i~~~l~~---~~~~~~~~~~~~~~~~~~g~~~v~l~Rl~PiP~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~  171 (261)
                      +++.+++..++   .++.++.++..++    ||.+.++++|++|..++++++++|+++||+++|++.+.+|.++|..+++
T Consensus        97 G~~~l~~~~~~~~~~~~l~~~~~~~~r----~G~~~v~i~RfiP~~R~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~  172 (219)
T PRK10847         97 GEKLFSNPNSKIFRRSYLDKTHQFYEK----HGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFT  172 (219)
T ss_pred             CHHHhhccccccCCHHHHHHHHHHHHH----cCCEEEEeeCCccchHhHHHHHhHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence            56655432222   1223344444443    5789999999999767899999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 024843          172 YSGRLIRTL  180 (261)
Q Consensus       172 ~~G~~l~~~  180 (261)
                      ++|+.+++.
T Consensus       173 ~~Gy~~g~~  181 (219)
T PRK10847        173 YAGYFFGTL  181 (219)
T ss_pred             HHHHHHcCC
Confidence            999998764

>COG1238 Predicted membrane protein [Function unknown]

Probab=99.61  E-value=2.1e-14  Score=118.95  Aligned_cols=150  Identities=15%  Similarity=0.126  Sum_probs=113.3

Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhhccccCChHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 024843           24 FPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMI-FGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQW  102 (261)
Q Consensus        24 ~~~~~w~~~~~g~~~~~i~~~~~~~~~p~~~iP~~~l~~~aG~l-fG~~~g~~~~~~g~~lG~~i~f~igR~~~~~i~~~  102 (261)
                      +...++..+..+++++++..|++.+++|+   |.+++.+..-.. ..++.-.+++++|+++|++++|++||+..+.+.+.
T Consensus         7 ~~~~~~~~~~~a~~~Lf~vaF~eat~lP~---~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~   83 (161)
T COG1238           7 DWTLSLMSQAYAYAGLFIVAFLEATLLPV---PSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARR   83 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHH
Confidence            34556666666889999999999999998   877664322111 55677889999999999999999999776655442


Q ss_pred             HhhchHHHHHHHHHHcCcchhhhHHHHHhhccccchhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHHHHHHHHH
Q 024843          103 LKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIR  178 (261)
Q Consensus       103 l~~~~~~~~~~~~~~~~~~~~g~~~v~l~Rl~PiP~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~~l~  178 (261)
                       +.....++.++..++...++|.+.++++-+.|+| ++++.++|..++++++|++..++|+..+.++.+++....+
T Consensus        84 -~~~~~~~~~~~~~~~~~~ryg~~~ll~s~lp~ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~~  157 (161)
T COG1238          84 -WFPGSEEALEKLQEKWYRRYGVWTLLLSWLPPIG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLGG  157 (161)
T ss_pred             -hhcchHHHHHHHHHHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             1111122223322211223689999999999999 9999999999999999999999999999999888876543

>KOG3140 consensus Predicted membrane protein [Function unknown]

Probab=99.52  E-value=8.2e-14  Score=124.38  Aligned_cols=145  Identities=20%  Similarity=0.332  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHhhhccccCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HhHHHHHHHHhhchHHHHHHH
Q 024843           37 PVLAIVLIASLALFPVFLIPSGPS-MWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGL-LFRDRIHQWLKRWPQQAAMLR  114 (261)
Q Consensus        37 ~~~~i~~~~~~~~~p~~~iP~~~l-~~~aG~lfG~~~g~~~~~~g~~lG~~i~f~igR-~~~~~i~~~l~~~~~~~~~~~  114 (261)
                      ....+.+++.+.+...+.+||..+ .+.+|++||.+.|++++...+++|++++|.+++ .+|+++.++...+.+..+.+-
T Consensus        94 a~~~~~~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~~~~~~~  173 (275)
T KOG3140|consen   94 AAVLLGFIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIAFLQQDV  173 (275)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHH
Confidence            456678888999999889998765 789999999999999999999999999999999 778888888766443332221


Q ss_pred             HHHcCcchhhhHHHHHhhccc-cchhhhhHHHhhcCCcchhHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q 024843          115 LAAEGSWLHQFRMVALFRVSP-FPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVK  184 (261)
Q Consensus       115 ~~~~~~~~~g~~~v~l~Rl~P-iP~~l~n~~aG~~~i~~~~f~~~t~lG~~p~~~l~~~~G~~l~~~~~~~  184 (261)
                      ..+++   +-+..+.+.|++| .|+++.|+++++.+++.+.|++++++|.+|..++++-.|+.+++..+..
T Consensus       174 ~~~~~---~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l~s~~  241 (275)
T KOG3140|consen  174 ELNRN---SLLNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASLTSAS  241 (275)
T ss_pred             Hhccc---chhhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhhcccc
Confidence            11222   1367899999999 5999999999999999999999999999999999999999988865543

>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins

Probab=95.09  E-value=0.45  Score=37.64  Aligned_cols=95  Identities=11%  Similarity=0.048  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH------HHhhch-HHHHHHHHHHcCcchhhhHHHHHhhccccc---h
Q 024843           69 GYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQ------WLKRWP-QQAAMLRLAAEGSWLHQFRMVALFRVSPFP---Y  138 (261)
Q Consensus        69 G~~~g~~~~~~g~~lG~~i~f~igR~~~~~i~~------~l~~~~-~~~~~~~~~~~~~~~~g~~~v~l~Rl~PiP---~  138 (261)
                      +++..++++.+|+++...+.++.-+...++.++      ..++.. +.++-++.++    ++|++.+++.=.+|+|   -
T Consensus        15 ~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~----kyg~~GL~lFVaIPlP~TG~   90 (121)
T PF06695_consen   15 PPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIE----KYGFWGLALFVAIPLPGTGA   90 (121)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHhCCCCcchH
Confidence            356777888888888877776665533332221      111100 0011111222    2577888877778887   3


Q ss_pred             hhhhHHHhhcCCcchhHHHHHHhhhHHHH
Q 024843          139 TIFNYAIVVTSMRFWPYLCGSVAGMVPEA  167 (261)
Q Consensus       139 ~l~n~~aG~~~i~~~~f~~~t~lG~~p~~  167 (261)
                      ..-+.++-+.+++.++=+++..+|.+...
T Consensus        91 wtgal~a~llg~~~~~~~~ai~~Gv~ia~  119 (121)
T PF06695_consen   91 WTGALIASLLGMDKKKAFLAIFLGVLIAG  119 (121)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            56667788899999999998888876543

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=93.73  E-value=0.091  Score=41.73  Aligned_cols=56  Identities=16%  Similarity=0.304  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCC-CCccccccCCCccCCC
Q 024843          195 IVYNIISFIIAVLTIIAFTVYAKRALKELERGEANGEETSTST-GSGFEMNKLPLERTKH  253 (261)
Q Consensus       195 ~~~~~v~~~~~vl~~i~~~~~~kr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  253 (261)
                      ....++|.+..+++++++..|.-|+++|....+.+-   .|++ ++|.-++.||.+-||+
T Consensus        66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~~p---~P~~~d~~~p~~~~~~~~~~~  122 (122)
T PF01102_consen   66 IIGIIFGVMAGVIGIILLISYCIRRLRKKSSSDVQP---LPEEDDTDVPLSSVEIENPET  122 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS---------------------------------
T ss_pred             eeehhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC---CCCCCCCCCCcceeeecCCCC
Confidence            344455666666666665555444444333332221   3444 7888999999998874

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>TIGR02359 thiW thiW protein

Probab=89.59  E-value=10  Score=31.46  Aligned_cols=33  Identities=12%  Similarity=0.101  Sum_probs=27.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 024843           56 PSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLP   88 (261)
Q Consensus        56 P~~~l~~~aG~lfG~~~g~~~~~~g~~lG~~i~   88 (261)
                      +++..++++|+++|||+|.....+++.++..+.
T Consensus        33 ~~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~   65 (160)
T TIGR02359        33 VQHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG   65 (160)
T ss_pred             hhHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence            456778999999999999998888888877654

Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.

>PRK01844 hypothetical protein; Provisional

Probab=86.03  E-value=2.2  Score=30.58  Aligned_cols=33  Identities=21%  Similarity=0.512  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHH-HhHHHHHHHHhhch
Q 024843           71 GLGFVIIMVGTTIGMVLPYWVGL-LFRDRIHQWLKRWP  107 (261)
Q Consensus        71 ~~g~~~~~~g~~lG~~i~f~igR-~~~~~i~~~l~~~~  107 (261)
                      |..+++..++.++|...+|+++| ++.+    +++++|
T Consensus         4 ~~~I~l~I~~li~G~~~Gff~ark~~~k----~lk~NP   37 (72)
T PRK01844          4 WLGILVGVVALVAGVALGFFIARKYMMN----YLQKNP   37 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCC
Confidence            45567778899999999999999 6554    445554

>PRK00523 hypothetical protein; Provisional

Probab=81.28  E-value=4.6  Score=29.00  Aligned_cols=26  Identities=19%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHH-HhHH
Q 024843           72 LGFVIIMVGTTIGMVLPYWVGL-LFRD   97 (261)
Q Consensus        72 ~g~~~~~~g~~lG~~i~f~igR-~~~~   97 (261)
                      ..+++..++.++|...+|+++| ++.+
T Consensus         6 l~I~l~i~~li~G~~~Gffiark~~~k   32 (72)
T PRK00523          6 LALGLGIPLLIVGGIIGYFVSKKMFKK   32 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777788999999999999 6654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00