Citrus Sinensis ID: 024845

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MATVTESSEDEKPNVAAASDTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNYGISV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
matvtessedekpnvaaasdtvfksqsledgnpwiDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHvaashpfitaggaiglgsfllkrprhflYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNYGISV
Flexible Loop (DISEMBL)
matvtessedekpnvaaasdtvfksqsledgnpwIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASeesllsradtkvKQLRQSIDrlkaeseklekvalvaedelirgrtklrqagkqiqgvinSAYKIERQAAGLKDIVgelprreasrfrsqvsniaseakrernaltkevskisnygisv
Low Complexity Region (SEG)
MATVTESSEDEKPNVAAASDTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNYGISV
Disordered region (IsUnstruct)
*******************************NPWIDNAVQQVMIYRKIVEESIDSAI*********TRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASE******************************VALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIV*******************************************
Disordered Region (DISOPRED)
******************************GNPWIDNAVQQVMIYRKIVE*************************QQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESL******************************VAE*EL*****************************GLKDIVGELPRREA**********************KEVSKISNYGISV
Disordered Region (DISEMBL)
****************AASDTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNYGISV
Disordered Region (DISPRO)
***********************KSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNYGISV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATVTESSEDEKPNVAAASDTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFxxxxxxxxxxxxxxxxxxxxxVSKISNYGISV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
255541158	267	conserved hypothetical protein [Ricinus	1.0	0.977	0.670	4e-95
224067612	270	predicted protein [Populus trichocarpa]	1.0	0.966	0.640	2e-89
225453510	260	PREDICTED: uncharacterized protein LOC10	0.911	0.915	0.694	9e-88
388518061	262	unknown [Lotus japonicus]	1.0	0.996	0.625	9e-87
297828223	272	hypothetical protein ARALYDRAFT_903941 [	0.908	0.871	0.645	3e-86
388502614	262	unknown [Lotus japonicus]	1.0	0.996	0.622	9e-86
18406697	272	uncharacterized protein [Arabidopsis tha	0.908	0.871	0.637	4e-85
356539160	258	PREDICTED: uncharacterized protein LOC10	0.988	1.0	0.586	1e-81
388494290	264	unknown [Medicago truncatula]	0.996	0.984	0.596	1e-81
449445698	284	PREDICTED: uncharacterized protein LOC10	0.908	0.834	0.598	2e-79

>gi|255541158|ref|XP_002511643.1| conserved hypothetical protein [Ricinus communis] gi|223548823|gb|EEF50312.1| conserved hypothetical protein [Ricinus communis]

 Score =  353 bits (906), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 179/267 (67%), Positives = 210/267 (78%), Gaps = 6/267 (2%)

Query: 1   MATVTE--SSEDEKPNVAAASD----TVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESID 54
           M T+ E  S  +EKP+  A S      + K ++LE+  PWID A+QQ + Y+K +EE++D
Sbjct: 1   MTTIAEESSPSEEKPSPPAPSHFPEAEMIKYKTLEEVTPWIDYAIQQALTYQKTIEEAVD 60

Query: 55  SAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFIT 114
            A +A RSR S+ R T+S HF QT+D LQDVKSE  AYED   GKVK+G++VAASHP IT
Sbjct: 61  DATKALRSRFSEIRSTSSAHFNQTMDSLQDVKSELGAYEDTLFGKVKDGVNVAASHPLIT 120

Query: 115 AGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEK 174
            G A+GLG  L KRPR FLYYNTLRLF SEE+LLS+AD KVK+L+QSI  L+AESEKLEK
Sbjct: 121 GGVAVGLGFVLFKRPRRFLYYNTLRLFVSEEALLSKADAKVKELQQSISLLRAESEKLEK 180

Query: 175 VALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVS 234
            A  AE ELIRGRTKLRQAGKQI GVI S YKIERQAAGLKDI+ ELP REASRFRSQVS
Sbjct: 181 RASSAEGELIRGRTKLRQAGKQICGVITSTYKIERQAAGLKDIIRELPSREASRFRSQVS 240

Query: 235 NIASEAKRERNALTKEVSKISNYGISV 261
           ++A+EAKRERNALTKEV+KISNYGISV
Sbjct: 241 SLATEAKRERNALTKEVTKISNYGISV 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067612|ref|XP_002302514.1| predicted protein [Populus trichocarpa] gi|222844240|gb|EEE81787.1| predicted protein [Populus trichocarpa]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 173/270 (64%), Positives = 212/270 (78%), Gaps = 9/270 (3%)

Query: 1   MATVTES-SEDEKPNV------AAASD--TVFKSQSLEDGNPWIDNAVQQVMIYRKIVEE 51
           M T  ES S +EKP+        A +D  ++ KS++LE+  PWIDNA+QQ +IY+K +++
Sbjct: 1   MPTDAESPSPEEKPSTHLPPRPTAETDLTSILKSKALEETAPWIDNALQQALIYQKTIQD 60

Query: 52  SIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHP 111
           S+D AIE+S+SR S+   T+  HF QT+D LQ   SE   YED   GK KEGI+VAASHP
Sbjct: 61  SLDIAIESSKSRFSEIITTSQAHFSQTIDSLQYFTSEIGVYEDKLFGKAKEGINVAASHP 120

Query: 112 FITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171
            IT+  A+GLG  +LKRPR  LYY TLRLF SEE+LLS+AD KVK+LRQSI  LKAESEK
Sbjct: 121 LITSAVAVGLGFVVLKRPRRILYYKTLRLFTSEEALLSQADAKVKELRQSISLLKAESEK 180

Query: 172 LEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRS 231
           LE+ A +AE+ELIRGRTKLRQAGKQIQGVI SAYKIERQA GL+DI+ ELPR EAS+FRS
Sbjct: 181 LERRASLAEEELIRGRTKLRQAGKQIQGVIRSAYKIERQATGLRDILRELPRAEASKFRS 240

Query: 232 QVSNIASEAKRERNALTKEVSKISNYGISV 261
           QVS++ASEAK+ERNAL+KEV+KISN+GISV
Sbjct: 241 QVSSLASEAKQERNALSKEVAKISNHGISV 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453510|ref|XP_002277999.1| PREDICTED: uncharacterized protein LOC100266783 [Vitis vinifera] gi|297734546|emb|CBI16597.3| unnamed protein product [Vitis vinifera]

 Score =  328 bits (842), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 166/239 (69%), Positives = 195/239 (81%), Gaps = 1/239 (0%)

Query: 24  KSQSLEDG-NPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYL 82
           K +SLE+  + WI+  V Q  +  K ++++++S IEAS SR SQ   T+S H QQT++ L
Sbjct: 22  KPKSLEEAASSWIEYGVNQAQLLHKTLDDTVNSFIEASGSRFSQILSTSSAHLQQTIESL 81

Query: 83  QDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFA 142
           +DVKSEY  YED AVGK+KEGI VAAS+P IT+G  +GLG  LLKRPRHFLYYNTLRL  
Sbjct: 82  KDVKSEYDVYEDLAVGKIKEGILVAASNPLITSGVCVGLGCLLLKRPRHFLYYNTLRLLV 141

Query: 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN 202
           SEES+++RAD KV +LR+SID LKAESEKLEK AL AEDE+ RGRTKLRQAG QIQ VI 
Sbjct: 142 SEESMVARADAKVNELRKSIDLLKAESEKLEKRALQAEDEMKRGRTKLRQAGNQIQSVIR 201

Query: 203 SAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNYGISV 261
           SAYKIERQA GLKDI+GELP REASRFRSQVS +ASEAKRER+AL+KEVSKISNYGISV
Sbjct: 202 SAYKIERQARGLKDILGELPSREASRFRSQVSKLASEAKRERSALSKEVSKISNYGISV 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518061|gb|AFK47092.1| unknown [Lotus japonicus]

 Score =  325 bits (834), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 164/262 (62%), Positives = 201/262 (76%), Gaps = 1/262 (0%)

Query: 1   MATVTESSEDEKPNVAAAS-DTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEA 59
           MATV ESSE + P  A  +  T     +L+   P+ID AV Q ++Y+K   ++++SAI+A
Sbjct: 1   MATVVESSESDTPPPAPGNHSTTSNRPTLDPTTPFIDYAVGQALLYQKAFNDAVESAIDA 60

Query: 60  SRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAI 119
           S+SR SQ R T+S HFQQTL  L D KS+Y AYED   GK+KEG+ VA+SHP IT G A 
Sbjct: 61  SKSRFSQIRSTSSAHFQQTLYALDDFKSQYNAYEDLLFGKIKEGVLVASSHPVITCGAAA 120

Query: 120 GLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVA 179
             G  + KRPR  LYYNT+RLF +EE+L+SRA  +VK+LR+SID LKAE EK EK AL A
Sbjct: 121 ATGLMVFKRPRRILYYNTMRLFLNEETLISRASAEVKELRKSIDLLKAEGEKWEKSALHA 180

Query: 180 EDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASE 239
           E++ + GRTKLRQAGKQI+ VI+SAYKIER+A GLKDI+GELPRREAS FRSQVS +ASE
Sbjct: 181 EEQFLHGRTKLRQAGKQIRNVIDSAYKIERRAGGLKDILGELPRREASHFRSQVSKLASE 240

Query: 240 AKRERNALTKEVSKISNYGISV 261
           AKRE+N+LTKEVSKISNYGISV
Sbjct: 241 AKREKNSLTKEVSKISNYGISV 262

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828223|ref|XP_002881994.1| hypothetical protein ARALYDRAFT_903941 [Arabidopsis lyrata subsp. lyrata] gi|297327833|gb|EFH58253.1| hypothetical protein ARALYDRAFT_903941 [Arabidopsis lyrata subsp. lyrata]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 153/237 (64%), Positives = 197/237 (83%)

Query: 25  SQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQD 84
           + ++E+   WID+A++Q ++Y+K + E++DS I+AS++RLSQ R T+  H  QT+D L+D
Sbjct: 36  TTTVENAASWIDDALRQALVYQKTISETVDSTIDASKARLSQIRDTSVAHTSQTIDSLRD 95

Query: 85  VKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASE 144
           + SEY  YE    GK+K+G++VAASHP I+   A G+G F LK+ R F+YYNT+R+F SE
Sbjct: 96  IASEYNVYEQMVFGKIKDGVNVAASHPLISGTLAFGVGIFALKKTRKFVYYNTVRMFVSE 155

Query: 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA 204
           E+LLSRAD KVK+LRQS+DRLKAESEKLE+VA VAE+ELIRGR KLRQAGKQI+G I+SA
Sbjct: 156 EALLSRADLKVKELRQSMDRLKAESEKLERVATVAEEELIRGRMKLRQAGKQIRGAISSA 215

Query: 205 YKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNYGISV 261
           YKIE+QAAGLKD++ ELP REASRFR+Q+SN ASE K+ERNALTKEV+KISNYGISV
Sbjct: 216 YKIEKQAAGLKDVLKELPTREASRFRTQISNRASEVKQERNALTKEVNKISNYGISV 272

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502614|gb|AFK39373.1| unknown [Lotus japonicus]

 Score =  322 bits (825), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 163/262 (62%), Positives = 200/262 (76%), Gaps = 1/262 (0%)

Query: 1   MATVTESSEDEKPNVAAAS-DTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEA 59
           MATV ESSE + P  A  +  T     +L+   P+ID AV Q ++Y+K   ++++SAI+A
Sbjct: 1   MATVVESSESDTPPPAPGNHSTTSNRPTLDPTTPFIDYAVGQALLYQKAFNDAVESAIDA 60

Query: 60  SRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAI 119
           S+SR SQ R T+S HFQQTL  L D KS+Y AYED   GK+KEG+ VA+SHP IT G A 
Sbjct: 61  SKSRFSQIRSTSSAHFQQTLYALDDFKSQYNAYEDLLFGKIKEGVLVASSHPVITCGAAA 120

Query: 120 GLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVA 179
             G  + KRPR  LYYNT+RLF +EE+L+SRA  +VK+LR+SID LKAE EK EK AL A
Sbjct: 121 ATGLMVFKRPRRILYYNTMRLFLNEETLISRASAEVKELRKSIDLLKAEGEKWEKSALHA 180

Query: 180 EDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASE 239
           E++ + GRTKL QAGKQI+ VI+SAYKIER+A GLKDI+GELPRREAS FRSQVS +ASE
Sbjct: 181 EEQFLHGRTKLGQAGKQIRNVIDSAYKIERRAGGLKDILGELPRREASHFRSQVSKLASE 240

Query: 240 AKRERNALTKEVSKISNYGISV 261
           AKRE+N+LTKEVSKISNYGISV
Sbjct: 241 AKREKNSLTKEVSKISNYGISV 262

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406697|ref|NP_566034.1| uncharacterized protein [Arabidopsis thaliana] gi|15010568|gb|AAK73943.1| At2g45060/T14P1.13 [Arabidopsis thaliana] gi|21553572|gb|AAM62665.1| unknown [Arabidopsis thaliana] gi|23505975|gb|AAN28847.1| At2g45060/T14P1.13 [Arabidopsis thaliana] gi|330255407|gb|AEC10501.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 151/237 (63%), Positives = 195/237 (82%)

Query: 25  SQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQD 84
           + ++E+   WID+A++Q ++Y+K + E++DS I+AS++RLSQ R T+  H  QT+D L+D
Sbjct: 36  TTTVENAASWIDDALRQALVYQKTITETVDSTIDASKARLSQIRDTSVAHTSQTIDSLRD 95

Query: 85  VKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASE 144
           + SEY  YE    GK+K+G++VAASHP I+   A G+G F LK+ R F+YYNT+R+F SE
Sbjct: 96  IASEYNVYEQMVFGKIKDGVNVAASHPLISGTLAFGVGIFALKKTRRFVYYNTVRMFVSE 155

Query: 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA 204
           E+LLSRAD KVK+LRQS+DRLKAESEKLE+VA VAE+E IRGR KLRQAGKQI+G I+SA
Sbjct: 156 EALLSRADLKVKELRQSMDRLKAESEKLERVATVAEEEFIRGRMKLRQAGKQIRGAISSA 215

Query: 205 YKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNYGISV 261
           YKIE+QAAGLKD++ ELP REASRFR+Q+S  ASE K+ERNALTKEV+KISNYGISV
Sbjct: 216 YKIEKQAAGLKDVLKELPTREASRFRTQISKRASEVKQERNALTKEVNKISNYGISV 272

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539160|ref|XP_003538068.1| PREDICTED: uncharacterized protein LOC100804339 [Glycine max]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 153/261 (58%), Positives = 194/261 (74%), Gaps = 3/261 (1%)

Query: 1   MATVTESSEDEKPNVAAASDTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEAS 60
           MA V ES E +  N ++ ++     Q+L +  P++D A+ Q  +Y K   +++DS I+ +
Sbjct: 1   MAMVAESPESDSDNNSSKTNN---PQTLNETAPFLDYALAQAQLYHKAFNDAVDSTIDTA 57

Query: 61  RSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIG 120
           +SR SQ R T+S HF QTLD L D+KS+Y AYE    GK+KEG+ VAASHP IT G    
Sbjct: 58  KSRFSQIRSTSSAHFHQTLDSLDDLKSQYTAYEGLLFGKIKEGVVVAASHPVITCGATAS 117

Query: 121 LGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAE 180
           LG  +LKRPR  LYYNTLRLF SEES++SRA  +VK+LRQSI+ LKAE EKLEK AL AE
Sbjct: 118 LGLLVLKRPRRVLYYNTLRLFVSEESMISRAHAEVKELRQSIELLKAEGEKLEKSALHAE 177

Query: 181 DELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEA 240
           ++ + GRTKLR AGKQI+ VI SAYKIE +A GLKDI+GELP+RE S FRSQVS +ASEA
Sbjct: 178 EQFLHGRTKLRHAGKQIRNVIQSAYKIEIRAGGLKDILGELPKRETSLFRSQVSKLASEA 237

Query: 241 KRERNALTKEVSKISNYGISV 261
           K+E+N ++KE+SKISNYGISV
Sbjct: 238 KKEKNTMSKEISKISNYGISV 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494290|gb|AFK35211.1| unknown [Medicago truncatula]

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 158/265 (59%), Positives = 195/265 (73%), Gaps = 5/265 (1%)

Query: 1   MATVTESSEDEKPNVAAAS----DTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSA 56
           MATV ESSE E P    A      T    Q+L D  P+ID AV  V+ Y+K   +++DSA
Sbjct: 1   MATVAESSEPEAPPSTPAPTVNQSTTTNPQTL-DVKPFIDYAVGHVLYYQKTFNDAVDSA 59

Query: 57  IEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAG 116
           I+AS SR SQ R T+S HF Q+LDYL D KS+Y AYE+   GK+KEG+ VAASHP IT+G
Sbjct: 60  IDASTSRFSQIRSTSSAHFHQSLDYLDDFKSQYNAYEELLFGKIKEGVLVAASHPVITSG 119

Query: 117 GAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVA 176
               +G  +LKRPR FLYYN  RLF SEESL+S+A  +VK+LRQSID LK+E E++EK A
Sbjct: 120 ATASMGLLVLKRPRRFLYYNMQRLFVSEESLVSKASEEVKELRQSIDLLKSEVERMEKSA 179

Query: 177 LVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNI 236
           L AE++ + G+TKLRQAGKQI+ VI SAYKIER+A GLKDI+GELP+ EAS FRSQVS I
Sbjct: 180 LHAEEQFLHGKTKLRQAGKQIRNVIQSAYKIERRAGGLKDILGELPKSEASHFRSQVSRI 239

Query: 237 ASEAKRERNALTKEVSKISNYGISV 261
           A + K+E+ +L KEV KISNYGIS+
Sbjct: 240 AFDVKQEKRSLAKEVFKISNYGISI 264

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445698|ref|XP_004140609.1| PREDICTED: uncharacterized protein LOC101214960 [Cucumis sativus]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/259 (59%), Positives = 193/259 (74%), Gaps = 22/259 (8%)

Query: 24  KSQSLED-GNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYL 82
           K QSLED   PW + A QQ ++Y++ ++ S++SAIE S+SRLSQ R T+  HFQ+ +D  
Sbjct: 27  KPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESAIEVSKSRLSQIRSTSFPHFQKAVDSF 86

Query: 83  QDVKSEYAAYEDAAVGKVKEGIH--------------------VAASHPFITAGGAIGLG 122
            + KSE AAYE+   GK++ G+                     VAASHP I+ G A G+G
Sbjct: 87  WEAKSELAAYENLVFGKIR-GLFLIYHCDGKLTLPSFVFSFSFVAASHPLISCGVATGMG 145

Query: 123 SFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDE 182
             + K+PR+FLYY T+RLF +EESLLS+AD KVK+LRQSIDR+K ESE+LEK  L AEDE
Sbjct: 146 FLVFKKPRNFLYYKTIRLFVNEESLLSKADAKVKELRQSIDRIKVESERLEKRTLQAEDE 205

Query: 183 LIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKR 242
           LIRGRTKLRQAGKQI+GVI SA+KIER+A GLKDI+ +LP REASRFR+QVSN+ASEAK+
Sbjct: 206 LIRGRTKLRQAGKQIEGVIQSAHKIERKARGLKDILADLPTREASRFRTQVSNLASEAKK 265

Query: 243 ERNALTKEVSKISNYGISV 261
           ER  L+KEVSKISNYGISV
Sbjct: 266 ERIGLSKEVSKISNYGISV 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2055578	272	AT2G45060 "AT2G45060" [Arabido	0.900	0.863	0.642	1.6e-77
TAIR|locus:2131473	263	AT4G26410 "AT4G26410" [Arabido	0.850	0.844	0.333	1.2e-28

TAIR|locus:2055578 AT2G45060 "AT2G45060" [Arabidopsis thaliana (taxid:3702)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 151/235 (64%), Positives = 194/235 (82%)

Query:    27 SLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVK 86
             ++E+   WID+A++Q ++Y+K + E++DS I+AS++RLSQ R T+  H  QT+D L+D+ 
Sbjct:    38 TVENAASWIDDALRQALVYQKTITETVDSTIDASKARLSQIRDTSVAHTSQTIDSLRDIA 97

Query:    87 SEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEES 146
             SEY  YE    GK+K+G++VAASHP I+   A G+G F LK+ R F+YYNT+R+F SEE+
Sbjct:    98 SEYNVYEQMVFGKIKDGVNVAASHPLISGTLAFGVGIFALKKTRRFVYYNTVRMFVSEEA 157

Query:   147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYK 206
             LLSRAD KVK+LRQS+DRLKAESEKLE+VA VAE+E IRGR KLRQAGKQI+G I+SAYK
Sbjct:   158 LLSRADLKVKELRQSMDRLKAESEKLERVATVAEEEFIRGRMKLRQAGKQIRGAISSAYK 217

Query:   207 IERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNYGISV 261
             IE+QAAGLKD++ ELP REASRFR+Q+S  ASE K+ERNALTKEV+KISNYGISV
Sbjct:   218 IEKQAAGLKDVLKELPTREASRFRTQISKRASEVKQERNALTKEVNKISNYGISV 272

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2131473 AT4G26410 "AT4G26410" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 76/228 (33%), Positives = 132/228 (57%)

Query:    35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYED 94
             I+ A + V   ++ V+ES D+A+ ++RS     R  ++  F+   D++    ++Y  YE+
Sbjct:    41 IEGAEKWVGDLQRTVKESKDTAMRSARS----LRENSTSQFRSIQDFIPHALTQYKTYEN 96

Query:    95 AAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTK 154
             A   KV + +  A  HP    G  +     L++ PR FL+ NTL  F SEE+   +A+  
Sbjct:    97 AFFSKVTDELIYAKEHPAAAIGIGVAASLVLMRGPRRFLFRNTLGRFQSEEAQFLKAEKH 156

Query:   155 VKQLRQSIDRLKAESEKL-EKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAG 213
             V++L  S+D +K ES KL E+ AL AE ++ RG ++L  +G  I  +  S +K E +AA 
Sbjct:   157 VQELNMSVDLMKKESRKLLERTAL-AEKDMKRGLSELMNSGNDIHRLAKSVHKAECEAAD 215

Query:   214 LKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNYGISV 261
             L D + ++P R+A + R++V+++ S  +++R AL K +  +S+ G+SV
Sbjct:   216 LMDGLRQIPGRDAIKLRAEVASMTSLLRQKRIALNKRIMGMSDLGVSV 263


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.127   0.334    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      261       261   0.00090  114 3  10 23  0.38    34
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  209 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.69u 0.08s 35.77t   Elapsed:  00:00:02
  Total cpu time:  35.69u 0.08s 35.77t   Elapsed:  00:00:02
  Start:  Sat May 11 04:01:15 2013   End:  Sat May 11 04:01:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00021319 hypothetical protein (270 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	97.6
PRK10404	101	hypothetical protein; Provisional	96.47
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.89
PRK10132	108	hypothetical protein; Provisional	95.05
COG4575	104	ElaB Uncharacterized conserved protein [Function u	94.86
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.5
PRK11637	428	AmiB activator; Provisional	93.83
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	93.36
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	88.29
PRK14161	178	heat shock protein GrpE; Provisional	87.5
PRK14160	211	heat shock protein GrpE; Provisional	87.09
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	86.12
PRK10132	108	hypothetical protein; Provisional	85.52
PRK11637	428	AmiB activator; Provisional	84.86
KOG1962	216	consensus B-cell receptor-associated protein and r	84.78
COG4942	420	Membrane-bound metallopeptidase [Cell division and	84.28
PRK09039	343	hypothetical protein; Validated	83.64
PRK14140	191	heat shock protein GrpE; Provisional	83.02
PF10186	302	Atg14: UV radiation resistance protein and autopha	82.86
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	80.28

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=97.60  E-value=0.0014  Score=50.80  Aligned_cols=82  Identities=18%  Similarity=0.227  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhChhhhhHHHHH
Q 024845           41 QVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIG  120 (261)
Q Consensus        41 qa~~~qk~~~~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~~A~~hP~~a~g~a~~  120 (261)
                      +..-+..-+.+-++++-+.+.....++++.-..++.++.+.+.++..+.+.--.....   ..-..+++||+-+.|+|++
T Consensus         6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~V~e~P~~svgiAag   82 (94)
T PF05957_consen    6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAE---QTEDYVRENPWQSVGIAAG   82 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHChHHHHHHHHH
Confidence            4444666677777777777777777888887777777777777665554332222222   2244678999999999999


Q ss_pred             HHHhh
Q 024845          121 LGSFL  125 (261)
Q Consensus       121 ag~ll  125 (261)
                      +|||+
T Consensus        83 vG~ll   87 (94)
T PF05957_consen   83 VGFLL   87 (94)
T ss_pred             HHHHH
Confidence            99986

>PRK10404 hypothetical protein; Provisional

Probab=96.47  E-value=0.054  Score=43.81  Aligned_cols=77  Identities=12%  Similarity=0.189  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHhhhChhhhhHH
Q 024845           42 VMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEG----IHVAASHPFITAGG  117 (261)
Q Consensus        42 a~~~qk~~~~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKeg----v~~A~~hP~~a~g~  117 (261)
                      -..+-.++.+-..++-+.+.....++|+....++..+++.|.++...       +..+-|+.    -..+++||+-++|+
T Consensus        14 l~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~-------~~~~~k~aa~~td~yV~e~Pw~avGi   86 (101)
T PRK10404         14 LTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDS-------YYYRAKQAVYRADDYVHEKPWQGIGV   86 (101)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            34455555555555556666667778888888888887777766553       33333333    45788899999999


Q ss_pred             HHHHHHhh
Q 024845          118 AIGLGSFL  125 (261)
Q Consensus       118 a~~ag~ll  125 (261)
                      ++++|||+
T Consensus        87 aagvGlll   94 (101)
T PRK10404         87 GAAVGLVL   94 (101)
T ss_pred             HHHHHHHH
Confidence            99998875

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.89  E-value=0.92  Score=38.45  Aligned_cols=125  Identities=21%  Similarity=0.278  Sum_probs=70.2

Q ss_pred             hhhhhHHHHHHHHhhcccchhHHHHHhhhhh-cCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024845          111 PFITAGGAIGLGSFLLKRPRHFLYYNTLRLF-ASE-------ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDE  182 (261)
Q Consensus       111 P~~a~g~a~~ag~lll~~PRrfL~r~TlgrF-~SE-------Eall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E  182 (261)
                      +.+.+++.+++|++++..-=.++.......- +.+       +.-+...+....++...++.+.+....+......-+++
T Consensus        38 s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~  117 (191)
T PF04156_consen   38 SFILGIALLALGVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKED  117 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555566677777665555543332211 111       12445555555556666666666666666666666666


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHHHH
Q 024845          183 LIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRE  243 (261)
Q Consensus       183 ~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~q  243 (261)
                      +...+..++.....++.+-.....+++....|.        ++-.+.+.++..+...++.-
T Consensus       118 ~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~--------~~~~~~~~~~~~~~~~~~~~  170 (191)
T PF04156_consen  118 LQELRELLKSVEERLDSLDESIKELEKEIRELQ--------KELQDSREEVQELRSQLERL  170 (191)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence            666666677777777777777777777766666        33334444444444444433

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK10132 hypothetical protein; Provisional

Probab=95.05  E-value=0.46  Score=38.96  Aligned_cols=60  Identities=13%  Similarity=0.295  Sum_probs=34.8

Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HHhhhChhhhhHHHHHHHHhh
Q 024845           58 EASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGI----HVAASHPFITAGGAIGLGSFL  125 (261)
Q Consensus        58 ~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv----~~A~~hP~~a~g~a~~ag~ll  125 (261)
                      +.+.....++++.-...+..+.+.|.+...-        ..+.|+.+    ..+++||+-++|+++++|||+
T Consensus        37 ~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~--------~~~~~~a~~~~~~~V~~~Pw~svgiaagvG~ll  100 (108)
T PRK10132         37 SDAKGEAEAARRKAQALLKETRARMHGRTRV--------QQAARDAVGCADTFVRERPWCSVGTAAAVGIFI  100 (108)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            3333344446665555666665555543321        12223333    367789999999988888875

>COG4575 ElaB Uncharacterized conserved protein [Function unknown]

Probab=94.86  E-value=0.26  Score=40.79  Aligned_cols=83  Identities=22%  Similarity=0.282  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HhhhCh
Q 024845           36 DNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH----VAASHP  111 (261)
Q Consensus        36 ~~a~~qa~~~qk~~~~s~d~ai~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~----~A~~hP  111 (261)
                      +..+.--+.|--+.++-.++.=..|.-...+|+...-+-+..+++-|.+..       |.+....|+.+.    ++.+||
T Consensus        11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~-------d~v~~~sk~a~~~tD~yV~e~P   83 (104)
T COG4575          11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTG-------DAVVQRSKAAADATDDYVRENP   83 (104)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHcCC
Confidence            443333444444555555555555555666677666666666666555554       555555565554    678899


Q ss_pred             hhhhHHHHHHHHhh
Q 024845          112 FITAGGAIGLGSFL  125 (261)
Q Consensus       112 ~~a~g~a~~ag~ll  125 (261)
                      .=++|++++.|||+
T Consensus        84 Wq~VGvaAaVGlll   97 (104)
T COG4575          84 WQGVGVAAAVGLLL   97 (104)
T ss_pred             chHHHHHHHHHHHH
Confidence            99999999988875

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.50  E-value=1.4  Score=40.89  Aligned_cols=122  Identities=17%  Similarity=0.257  Sum_probs=72.9

Q ss_pred             HHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHH
Q 024845          134 YYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQA---------GKQIQGVINSA  204 (261)
Q Consensus       134 ~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~a---------g~qiq~l~~s~  204 (261)
                      ++..+...++   .+.++-..+..++..++.++++...++....-.++.+.+++.+|.+.         .++|+-+-+..
T Consensus        29 ~~~~l~k~~~---e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~  105 (239)
T COG1579          29 IRKALKKAKA---ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERI  105 (239)
T ss_pred             hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            3344444443   45555556666666666666666666666666666666666665332         34444444444


Q ss_pred             HHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhhcCC
Q 024845          205 YKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAKRERNALTKEVSKISNYGI  259 (261)
Q Consensus       205 yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK~qR~aL~k~l~KIs~~GI  259 (261)
                      -..|.....|++.+..| .++...++.++..+-..+...+..++.++.+|-+-|.
T Consensus       106 ~~le~el~~l~~~~~~l-~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~  159 (239)
T COG1579         106 NSLEDELAELMEEIEKL-EKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQ  159 (239)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555544444 3566777788888877888888888888888876554

>PRK11637 AmiB activator; Provisional

Probab=93.83  E-value=4.1  Score=39.15  Aligned_cols=93  Identities=10%  Similarity=0.209  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHH
Q 024845          150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRF  229 (261)
Q Consensus       150 ~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~L  229 (261)
                      ..+.+.+++++.++.++++++.+.+.....+.++..=..+|..+..+|..+-..+-.++...               ..+
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei---------------~~l  108 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQI---------------DEL  108 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH
Confidence            34455555555555555555555555554444444434444444444443333333333332               234


Q ss_pred             HHHHhHhHHHHHHHHHHHHHHHHhhhhc
Q 024845          230 RSQVSNIASEAKRERNALTKEVSKISNY  257 (261)
Q Consensus       230 RseVAs~AS~vK~qR~aL~k~l~KIs~~  257 (261)
                      ..++..+-.++..++..|.+++.-+-..
T Consensus       109 ~~eI~~~q~~l~~~~~~l~~rlra~Y~~  136 (428)
T PRK11637        109 NASIAKLEQQQAAQERLLAAQLDAAFRQ  136 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4455555555566666665555544443

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=93.36  E-value=3.6  Score=37.11  Aligned_cols=118  Identities=14%  Similarity=0.216  Sum_probs=91.4

Q ss_pred             hhcccchhHHH---------HHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 024845          124 FLLKRPRHFLY---------YNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAG  194 (261)
Q Consensus       124 lll~~PRrfL~---------r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag  194 (261)
                      ..+|.|.+++|         +.-.+.+..-...+...+..+..|...++.+.....+....+........+-+..-..-.
T Consensus        14 ~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~   93 (264)
T PF06008_consen   14 GAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLE   93 (264)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34689999988         223333444455688888888888888888888888888777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhccCCchHHHHHHHHHhHhHHHHH
Q 024845          195 KQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSNIASEAK  241 (261)
Q Consensus       195 ~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~reA~~LRseVAs~AS~vK  241 (261)
                      ..|+.+...|-.+-.++.+|=.....+|+.+-.+...|+..|-.+++
T Consensus        94 ~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr  140 (264)
T PF06008_consen   94 QFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMR  140 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            78888888888888888877777778899888888899999988875

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=88.29  E-value=10  Score=37.92  Aligned_cols=104  Identities=18%  Similarity=0.200  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 024845          145 ESLLSRADTKVKQLRQSI-----DRLKAESEKLEKVALVAEDELIRGRT--KLRQAGKQIQGVINSAYKIERQAAGLKDI  217 (261)
Q Consensus       145 Eall~~Ae~~v~eLr~sv-----dl~k~Es~KL~eraa~AE~E~~rGrt--kLr~ag~qiq~l~~s~yk~E~~A~gL~d~  217 (261)
                      ++|+..+|+-||+|..-+     .-...|.++.++|+..|...|..=|+  .+-.-.++......-|.+.|.+-..+.-.
T Consensus       222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ae  301 (434)
T PRK15178        222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAE  301 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999997643     33444454445554444444432111  12223566777777789999988888877


Q ss_pred             hccC-----Cc-hHHHHHHHHHhHhHHHHHHHHHHHH
Q 024845          218 VGEL-----PR-REASRFRSQVSNIASEAKRERNALT  248 (261)
Q Consensus       218 Lr~L-----P~-reA~~LRseVAs~AS~vK~qR~aL~  248 (261)
                      |..|     |. .+-..|+++|+.|-.++..+|.-|.
T Consensus       302 L~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~  338 (434)
T PRK15178        302 YAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS  338 (434)
T ss_pred             HHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence            7755     33 5566788999999999988887774

>PRK14161 heat shock protein GrpE; Provisional

Probab=87.50  E-value=14  Score=32.65  Aligned_cols=77  Identities=26%  Similarity=0.329  Sum_probs=56.4

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccC
Q 024845          142 ASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGEL  221 (261)
Q Consensus       142 ~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~L  221 (261)
                      .+|+.+..-++.-|+.++..++.++.|...+.++..-+..||..=|-...   ++....  .-|..++-+..|+..+..|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~---ke~~~~--~~~a~~~~~~~LLpv~Dnl   82 (178)
T PRK14161          8 NNEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLE---KARDEA--KDYAIATFAKELLNVSDNL   82 (178)
T ss_pred             ccHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHhhHHhHH
Confidence            36888999999999999999999998888888877766666665443222   232222  2577888899998888777


Q ss_pred             Cc
Q 024845          222 PR  223 (261)
Q Consensus       222 P~  223 (261)
                      =+
T Consensus        83 er   84 (178)
T PRK14161         83 SR   84 (178)
T ss_pred             HH
Confidence            54

>PRK14160 heat shock protein GrpE; Provisional

Probab=87.09  E-value=17  Score=33.16  Aligned_cols=106  Identities=16%  Similarity=0.164  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHhcc
Q 024845          143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGE  220 (261)
Q Consensus       143 SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s--~yk~E~~A~gL~d~Lr~  220 (261)
                      |+|+.+...+..+..|...++.++.+...|.++..-+..||.       +..+-.++-...  -|..++-+..|+..+..
T Consensus        51 ~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~Aefe-------N~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn  123 (211)
T PRK14160         51 SNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYD-------NYRKRTAKEKEGIYSDACEDVLKELLPVLDN  123 (211)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence            455566666666666666666666666666666555555544       433333333322  57788889999988888


Q ss_pred             CCchHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845          221 LPRREASRFRSQVSNIASEAKRERNALTKEVSKISNYGIS  260 (261)
Q Consensus       221 LP~reA~~LRseVAs~AS~vK~qR~aL~k~l~KIs~~GI~  260 (261)
                      |=+.-..  -..   ..+-++.-..++.+-+.-..++||.
T Consensus       124 LerAl~~--~~~---~~~l~~Gv~mi~kql~~vL~k~GVe  158 (211)
T PRK14160        124 LERAAAV--EGS---VEDLKKGIEMTVKQFKTSLEKLGVE  158 (211)
T ss_pred             HHHHHhc--ccc---hhHHHHHHHHHHHHHHHHHHHCCCE
Confidence            7654221  111   1223344445555555555667763

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=86.12  E-value=18  Score=29.94  Aligned_cols=58  Identities=28%  Similarity=0.352  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 024845          147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA  204 (261)
Q Consensus       147 ll~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~  204 (261)
                      .-.....+...+...++.+.+..++|.++....|.++.--..+.++...+++++....
T Consensus        53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~  110 (151)
T PF11559_consen   53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL  110 (151)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344566777888888888999999999999999999888888888888888775443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK10132 hypothetical protein; Provisional

Probab=85.52  E-value=9.1  Score=31.46  Aligned_cols=65  Identities=14%  Similarity=0.078  Sum_probs=50.2

Q ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhChhhhhHHHHHHHHhhccc
Q 024845           57 IEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKR  128 (261)
Q Consensus        57 i~a~~sr~s~~~~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~~A~~hP~~a~g~a~~ag~lll~~  128 (261)
                      ++.+|.|+....+.+-..+..+.+..++.+.-...-++.+=.++=.+|       +|++|+++.+|+|+-||
T Consensus        43 ~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~sv-------giaagvG~llG~Ll~RR  107 (108)
T PRK10132         43 AEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSV-------GTAAAVGIFIGALLSLR  107 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHH-------HHHHHHHHHHHHHHhcc
Confidence            588899998888888888888777666666666677776666764444       47899999999998764

>PRK11637 AmiB activator; Provisional

Probab=84.86  E-value=39  Score=32.62  Aligned_cols=62  Identities=8%  Similarity=0.178  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 024845          146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI  207 (261)
Q Consensus       146 all~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~  207 (261)
                      .-++..+.++..+...++....++..+...+...++++..-..+|.....++...+..+|+.
T Consensus        75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~  136 (428)
T PRK11637         75 AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQ  136 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34555566666666677777777777777777777777777777888888888888888874

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=84.78  E-value=21  Score=32.86  Aligned_cols=93  Identities=20%  Similarity=0.285  Sum_probs=55.6

Q ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 024845          137 TLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKD  216 (261)
Q Consensus       137 TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d  216 (261)
                      -+++...+++. ..|.++...++..++..++    |.+......++...=+++|+...+.+....+.+--..+|+.++.+
T Consensus       119 ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~  193 (216)
T KOG1962|consen  119 LLRELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD  193 (216)
T ss_pred             HHHHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            34555555554 5556666666666655444    334444444444444555555556666666667777788888777


Q ss_pred             HhccCCchHHHHHHHHHhH
Q 024845          217 IVGELPRREASRFRSQVSN  235 (261)
Q Consensus       217 ~Lr~LP~reA~~LRseVAs  235 (261)
                      .-..| ..+.++||.||-+
T Consensus       194 EydrL-lee~~~Lq~~i~~  211 (216)
T KOG1962|consen  194 EYDRL-LEEYSKLQEQIES  211 (216)
T ss_pred             HHHHH-HHHHHHHHHHHhc
Confidence            66555 3577888888753

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=84.28  E-value=42  Score=33.79  Aligned_cols=78  Identities=21%  Similarity=0.278  Sum_probs=55.3

Q ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhc
Q 024845          140 LFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG  219 (261)
Q Consensus       140 rF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr  219 (261)
                      .+.++ .-++..+++.+.+..++...+.+.++|++.+.-.|.++..=...|++++..+..+       ++.-..+-+.|.
T Consensus        33 ~~a~~-~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~-------~~~I~~~~~~l~  104 (420)
T COG4942          33 AAADD-KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKL-------RKQIADLNARLN  104 (420)
T ss_pred             HHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HhhHHHHHHHHH
Confidence            44444 6788899999999999999999999999888888877766665555555555554       444444445555


Q ss_pred             cCCchH
Q 024845          220 ELPRRE  225 (261)
Q Consensus       220 ~LP~re  225 (261)
                      .|+..+
T Consensus       105 ~l~~q~  110 (420)
T COG4942         105 ALEVQE  110 (420)
T ss_pred             HHHHHH
Confidence            555544

>PRK09039 hypothetical protein; Validated

Probab=83.64  E-value=42  Score=32.10  Aligned_cols=153  Identities=16%  Similarity=0.191  Sum_probs=102.1

Q ss_pred             HHHHHHHHHhHHHHHHHHhhhhhhhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HhhhChhhhhHH
Q 024845           43 MIYRKIVEESIDSAIEASRSRLSQTR---LTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH--VAASHPFITAGG  117 (261)
Q Consensus        43 ~~~qk~~~~s~d~ai~a~~sr~s~~~---~ts~~h~~~~~~~l~~~~sey~~yEd~~f~kiKegv~--~A~~hP~~a~g~  117 (261)
                      |++=.---+..|..++...++++++-   +--..+-...++.|..+..+|...|..== .++.-..  ....+|.-    
T Consensus        41 q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~-~Le~~~~~~~~~~~~~~----  115 (343)
T PRK09039         41 QFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERS-RLQALLAELAGAGAAAE----  115 (343)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhcchHH----
Confidence            33333334556777777776665543   33445556677778888888876554211 1111000  00011211    


Q ss_pred             HHHHHHhhcccchhHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 024845          118 AIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQI  197 (261)
Q Consensus       118 a~~ag~lll~~PRrfL~r~TlgrF~SEEall~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qi  197 (261)
                       ..++-+             -..+..+.+..+.+...|.-|++-|+.+++.+..|+..+..+|.+-.--+.++..-+..|
T Consensus       116 -~~~~~l-------------~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L  181 (343)
T PRK09039        116 -GRAGEL-------------AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL  181 (343)
T ss_pred             -HHHHHH-------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             111211             277888999999999999999999999999999999999999999988899999999999


Q ss_pred             HHHHHH-HHHHHHHHhhH
Q 024845          198 QGVINS-AYKIERQAAGL  214 (261)
Q Consensus       198 q~l~~s-~yk~E~~A~gL  214 (261)
                      +..+.. +-..++=...+
T Consensus       182 ~~a~~~~~~~l~~~~~~~  199 (343)
T PRK09039        182 NVALAQRVQELNRYRSEF  199 (343)
T ss_pred             HHHHHHHHHHHHHhHHHH
Confidence            988744 55555555555

>PRK14140 heat shock protein GrpE; Provisional

Probab=83.02  E-value=22  Score=31.97  Aligned_cols=95  Identities=17%  Similarity=0.218  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHhccCCchHHHHHHHHHh
Q 024845          157 QLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN--SAYKIERQAAGLKDIVGELPRREASRFRSQVS  234 (261)
Q Consensus       157 eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~--s~yk~E~~A~gL~d~Lr~LP~reA~~LRseVA  234 (261)
                      ++...++.++.|+..|.++.       +|-..++-+..+-.++-..  .-|.+++-+..|++.+..|=+  |+.--++-.
T Consensus        41 ~l~~~i~~l~~ei~elkd~~-------lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLer--Al~~~~~~~  111 (191)
T PRK14140         41 EEQAKIAELEAKLDELEERY-------LRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFER--ALQIEADDE  111 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCccc
Confidence            33444444444444444444       4444444444443333333  357788999999998888733  222111111


Q ss_pred             HhHHHHHHHHHHHHHHHHhhhhcCCC
Q 024845          235 NIASEAKRERNALTKEVSKISNYGIS  260 (261)
Q Consensus       235 s~AS~vK~qR~aL~k~l~KIs~~GI~  260 (261)
                      ...+-+..-..++.+-++-..+|||.
T Consensus       112 ~~~~i~~Gv~mi~k~l~~~L~k~GV~  137 (191)
T PRK14140        112 QTKSLLKGVEMVHRQLLEALKKEGVE  137 (191)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence            12233344445555555555677764

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=82.86  E-value=33  Score=30.24  Aligned_cols=31  Identities=26%  Similarity=0.373  Sum_probs=24.0

Q ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHHHhhhhc
Q 024845          227 SRFRSQVSNIASEAKRERNALTKEVSKISNY  257 (261)
Q Consensus       227 ~~LRseVAs~AS~vK~qR~aL~k~l~KIs~~  257 (261)
                      ...+..+..+...+...|..+-+.|..|+.-
T Consensus       129 ~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI  159 (302)
T PF10186_consen  129 EERKQRLSQLQSQLARRRRQLIQELSEIFPI  159 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            3456677778888888899998888888654

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=80.28  E-value=26  Score=30.60  Aligned_cols=18  Identities=11%  Similarity=0.111  Sum_probs=10.6

Q ss_pred             cccchhHHHHHhhhhhcC
Q 024845          126 LKRPRHFLYYNTLRLFAS  143 (261)
Q Consensus       126 l~~PRrfL~r~TlgrF~S  143 (261)
                      +---++|+|....+.+..
T Consensus        24 y~ll~kf~~ppI~~iLe~   41 (155)
T PRK06569         24 YIFVYKFITPKAEEIFNN   41 (155)
T ss_pred             HHHHHHHhHHHHHHHHHH
Confidence            334567888666555443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	88.72
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	83.55
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	83.05

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=88.72  E-value=11  Score=32.62  Aligned_cols=104  Identities=11%  Similarity=0.112  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---------HHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 024845          148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLR---------QAGKQIQGVINSAYKIERQAAGLKDIV  218 (261)
Q Consensus       148 l~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr---------~ag~qiq~l~~s~yk~E~~A~gL~d~L  218 (261)
                      +.+....+..++..++.++.+..++..-....+....+-..+|.         +-.++|..+-..+...|.....+++.+
T Consensus        41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~i  120 (256)
T 3na7_A           41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEI  120 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444443         335677777777777777777777766


Q ss_pred             ccCCchHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 024845          219 GELPRREASRFRSQVSNIASEAKRERNALTKEVS  252 (261)
Q Consensus       219 r~LP~reA~~LRseVAs~AS~vK~qR~aL~k~l~  252 (261)
                      ..+-. +--.+..+++.+-..+...+..++..+.
T Consensus       121 e~~~~-~l~~~~~~l~~~~~~l~~~~~~~~~~~~  153 (256)
T 3na7_A          121 KRKSE-KQEDLKKEMLELEKLALELESLVENEVK  153 (256)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55422 2223444555555555544444444443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=83.55  E-value=17  Score=30.55  Aligned_cols=70  Identities=19%  Similarity=0.321  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 024845          146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLK  215 (261)
Q Consensus       146 all~~Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~  215 (261)
                      ..++.|+.+.+.---+|.-+..++.+|+|.+......+..=.-.|.++-.+|.++....|-.++..+.|+
T Consensus        84 ~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~  153 (155)
T 2efr_A           84 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK  153 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            4678888888888888888889999999999999999999999999999999999999999999888775

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=83.05  E-value=22  Score=30.73  Aligned_cols=97  Identities=12%  Similarity=0.142  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhccCCc-hHHHHH
Q 024845          151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPR-REASRF  229 (261)
Q Consensus       151 Ae~~v~eLr~svdl~k~Es~KL~eraa~AE~E~~rGrtkLr~ag~qiq~l~~s~yk~E~~A~gL~d~Lr~LP~-reA~~L  229 (261)
                      .+.+...|+.....+-.|+..|++.....+.++..=.+.+.....++..+-..+-....+.......|...-. ++-..|
T Consensus        16 lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL   95 (256)
T 3na7_A           16 LDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSL   95 (256)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence            3344444455555555555555555555555555555556666666666555555555555555555555544 777777


Q ss_pred             HHHHhHhHHHHHHHHHHHHHHH
Q 024845          230 RSQVSNIASEAKRERNALTKEV  251 (261)
Q Consensus       230 RseVAs~AS~vK~qR~aL~k~l  251 (261)
                      ..|+..+    +.....|++.|
T Consensus        96 ~kEie~~----~~~i~~lE~ei  113 (256)
T 3na7_A           96 NIEEDIA----KERSNQANREI  113 (256)
T ss_dssp             HHHHHHH----HHHHHHHHHHH
T ss_pred             HHHHHHH----HHHHHHHHHHH
Confidence            7787776    44444444444

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00