Citrus Sinensis ID: 024857

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-

MGKNCFFLVARPLLRIQSQFVEFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQEISAVPSSYCSGQLDPKKVFQSD

ccccccccccccccccEEEcccccccccccccEEEEccccEEcccccccccccccccEEEEEEcccccHHcccccccEEEEEEEEccccccEEEEEEEEEccccccEEEEEEEEEEEEEccccccEEEccccccEEEccccccccccccccEEEcccccEEEcccccEEEEEEccccEEEEEEEcccccEEEEccccccccccccccccccccEEEEccccccccEEEccccEEEEEEEEEEEEccccccccccccccccc

ccccEEEEccccEEEccEEcccccccccccccccEEcccEEEEcccccccccccccEEEEEEEcccccccccccccEEEEEEEEEccccEEEEEEEEEEEccccccEEEEHHHHHHEEcccccEEEEEcccccHHHHccccccHEcccccEEEEcccccEEEEccccEEEEEccccccEEEEEEcccccEEEEccHHHHHHHHcccccccccEEEEEEEccccccEEEcccccEEEEEEEEEEEcccccccccccHEEccc

mgkncfflvarplLRIQSQFVEfanhgslekhgfarsrvwsidpdpppfsansssqACVDLILKHSEEEVKIWPHRYEFRLRitlgpggdlmltsrirntntdgksfAFTFAYHTYFAVSDISEVRVEGLetldyldnlkdkerfteqgdaitfesevdkvylstptkiaiLDHERKRTfvlrkdglpdavvwnpwdkKAKAMADFGDDEYKHMLCVEaacvekpiilkpgeewrgrqeisavpssycsgqldpkkvfqsd

MGKNCFFLVARPLLRIQSQFVEFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLdyldnlkdkerfteqgdaitfesevdkvylstptkiaildherkrtfvlrkdglpdavvwnpwdKKAKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQEIsavpssycsgqldpkkvfqsd

MGKNCFFLVARPLLRIQSQFVEFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSfaftfayhtyfaVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQEISAVPSSYCSGQLDPKKVFQSD

***NCFFLVARPLLRIQSQFVEFANHGSLEKHGFARSRVWSI**************ACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRG*************************

*GKNCFFLVARPLLRIQSQFVEFANHGSLEKHGFARSRVWSIDPDPP******SSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQEISAVPSSYCSGQLDPKKVFQ**

**KNCFFLVARPLLRIQSQFVEFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQEISAVPSSYCSGQLDPKKVFQ**

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		261	2.2.26 [Sep-21-2011]
Q40784		329	Putative glucose-6-phosph	N/A	no	0.915	0.726	0.761	1e-108
Q03161		297	Glucose-6-phosphate 1-epi	yes	no	0.766	0.673	0.314	3e-22
P39173		294	Putative glucose-6-phosph	N/A	no	0.701	0.622	0.294	1e-14
P44160		271	Putative glucose-6-phosph	yes	no	0.574	0.553	0.272	2e-10

>sp\|Q40784\|AAPC_CENCI Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1	Back alignment and function desciption

 Score =  392 bits (1008), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/239 (76%), Positives = 207/239 (86%)

Query: 22  EFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRL 81
           +F  HG+LE+HGFAR+R WSID DPPP   N + +A VDLIL+ +EE++KIWPH +EFRL
Sbjct: 91  QFGTHGNLEQHGFARNRFWSIDNDPPPLPVNPAIKAFVDLILRPAEEDLKIWPHSFEFRL 150

Query: 82  RITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKD 141
           R+ LGP GDL LTSRIRNTNTDG+ F++TFAYHTYF VSDISEVRVEGLET+DYLDNLK 
Sbjct: 151 RVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYFFVSDISEVRVEGLETMDYLDNLKA 210

Query: 142 KERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAK 201
           KERFTEQGDAI FESEVDKVYL+ P+KIAI+DHE+K+TFV+ K+GLPDAVVWNPWDKKAK
Sbjct: 211 KERFTEQGDAIVFESEVDKVYLAAPSKIAIIDHEKKKTFVVTKEGLPDAVVWNPWDKKAK 270

Query: 202 AMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQEISAVPSSYCSGQLDPKKVFQS 260
           AM DFGD EYK+MLCVE A VEKPI LKPGEEWRGR  +SAVPSSYCSGQLDP KV   
Sbjct: 271 AMQDFGDAEYKNMLCVEPAAVEKPITLKPGEEWRGRIALSAVPSSYCSGQLDPLKVLHG 329

Cenchrus ciliaris (taxid: 35872)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5

>sp\|Q03161\|YMY9_YEAST Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR099C PE=1 SV=1	Back alignment and function description

>sp\|P39173\|YEAD_ECOLI Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli (strain K12) GN=yeaD PE=1 SV=2	Back alignment and function description

>sp\|P44160\|Y1317_HAEIN Putative glucose-6-phosphate 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1317 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		261
225446010		314	PREDICTED: putative glucose-6-phosphate	0.919	0.764	0.854	1e-121
224053080		309	predicted protein [Populus trichocarpa]	0.908	0.766	0.869	1e-120
224075930		319	predicted protein [Populus trichocarpa]	0.927	0.758	0.842	1e-119
356521701		314	PREDICTED: putative glucose-6-phosphate	0.923	0.767	0.825	1e-119
255543425		360	aldose 1-epimerase, putative [Ricinus co	0.927	0.672	0.823	1e-117
356523461		314	PREDICTED: putative glucose-6-phosphate	0.915	0.761	0.815	1e-117
357449387		318	hypothetical protein MTR_2g036810 [Medic	0.923	0.757	0.813	1e-116
356556210		330	PREDICTED: putative glucose-6-phosphate	0.915	0.724	0.807	1e-115
356530308		321	PREDICTED: putative glucose-6-phosphate	0.915	0.744	0.803	1e-114
224126135		315	predicted protein [Populus trichocarpa]	0.915	0.758	0.817	1e-113

>gi\|225446010\|ref\|XP_002268176.1\| PREDICTED: putative glucose-6-phosphate 1-epimerase [Vitis vinifera] gi\|297735418\|emb\|CBI17858.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/240 (85%), Positives = 225/240 (93%)

Query: 20  FVEFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEF 79
           F +F NHGSLE+HGFAR+RVWSID DPPPF  N+SS+A +DLILK SEE++KIWPH YEF
Sbjct: 73  FPQFGNHGSLEQHGFARNRVWSIDVDPPPFPTNTSSRAFIDLILKPSEEDMKIWPHSYEF 132

Query: 80  RLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNL 139
           RLR+ LGPGGDLMLTSRIRNT+T+GK   FTFAYHTYF+VSDISEVRVEGLETLDYLDNL
Sbjct: 133 RLRVALGPGGDLMLTSRIRNTSTEGKPLTFTFAYHTYFSVSDISEVRVEGLETLDYLDNL 192

Query: 140 KDKERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKK 199
           ++KERFTEQGDAITFESEVDK+Y+STPTKIAILDHE+KRTFV+RKDGLPDAVVWNPWDKK
Sbjct: 193 QNKERFTEQGDAITFESEVDKIYVSTPTKIAILDHEKKRTFVIRKDGLPDAVVWNPWDKK 252

Query: 200 AKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQEISAVPSSYCSGQLDPKKVFQ 259
           AKAMADFGDDEYKHMLCVEAA VEKPI LKPGEEWRGRQE+SAVPSSYCSGQLDP+KV Q
Sbjct: 253 AKAMADFGDDEYKHMLCVEAAAVEKPITLKPGEEWRGRQELSAVPSSYCSGQLDPQKVLQ 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224053080\|ref\|XP_002297697.1\| predicted protein [Populus trichocarpa] gi\|222844955\|gb\|EEE82502.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224075930\|ref\|XP_002304833.1\| predicted protein [Populus trichocarpa] gi\|222842265\|gb\|EEE79812.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356521701\|ref\|XP_003529490.1\| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Glycine max]	Back alignment and taxonomy information

>gi\|255543425\|ref\|XP_002512775.1\| aldose 1-epimerase, putative [Ricinus communis] gi\|223547786\|gb\|EEF49278.1\| aldose 1-epimerase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356523461\|ref\|XP_003530357.1\| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Glycine max]	Back alignment and taxonomy information

>gi\|357449387\|ref\|XP_003594970.1\| hypothetical protein MTR_2g036810 [Medicago truncatula] gi\|355484018\|gb\|AES65221.1\| hypothetical protein MTR_2g036810 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356556210\|ref\|XP_003546419.1\| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Glycine max]	Back alignment and taxonomy information

>gi\|356530308\|ref\|XP_003533724.1\| PREDICTED: putative glucose-6-phosphate 1-epimerase-like isoform 1 [Glycine max] gi\|356530310\|ref\|XP_003533725.1\| PREDICTED: putative glucose-6-phosphate 1-epimerase-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|224126135\|ref\|XP_002329669.1\| predicted protein [Populus trichocarpa] gi\|222870550\|gb\|EEF07681.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		261
TAIR\|locus:2165580		312	AT5G57330 [Arabidopsis thalian	0.919	0.769	0.712	3e-94
TAIR\|locus:2145748		306	AT5G14500 [Arabidopsis thalian	0.911	0.777	0.615	2.2e-80
TAIR\|locus:2084233		306	AT3G01590 [Arabidopsis thalian	0.911	0.777	0.607	4.8e-78
TAIR\|locus:2082842		317	AT3G61610 [Arabidopsis thalian	0.904	0.744	0.598	1.1e-76
TAIR\|locus:2128519		306	AT4G23730 [Arabidopsis thalian	0.862	0.735	0.567	6.1e-71
TAIR\|locus:2117572		318	AT4G25900 [Arabidopsis thalian	0.842	0.691	0.484	2.8e-57
ASPGD\|ASPL0000045178		315	AN10222 [Emericella nidulans (	0.808	0.669	0.346	3.9e-28
UNIPROTKB\|Q9KQJ7		296	VC_2001 "Putative uncharacteri	0.727	0.641	0.312	4.8e-23
TIGR_CMR\|VC_2001		296	VC_2001 "conserved hypothetica	0.727	0.641	0.312	4.8e-23
FB\|FBgn0028540		297	CG9008 [Drosophila melanogaste	0.839	0.737	0.276	7.8e-23

TAIR\|locus:2165580 AT5G57330 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 171/240 (71%), Positives = 202/240 (84%)

Query:    20 FVEFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEF 79
             F +F+N G+LE HGFAR+R+W ++ +PPP   NS S A VDLIL+ +E+++KIWP+ +EF
Sbjct:    73 FPQFSNFGTLESHGFARNRIWEVEANPPPLPLNSCSSAFVDLILRPTEDDLKIWPNNFEF 132

Query:    80 RLRITLGPGGDLMLTSRIRNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGLETLDYLDNL 139
             RLRI LG  G+L LTSRIRNTN+DGK             VSDISEVRVEGLETLDYLDNL
Sbjct:   133 RLRIALGTEGELTLTSRIRNTNSDGKPFTFTFAYHTYFSVSDISEVRVEGLETLDYLDNL 192

Query:   140 KDKERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKK 199
             KD+ERFTEQGDAITFESEVDK+YLSTPTKIAILDHE+KRTFV+RKDGL DAVVWNPWDKK
Sbjct:   193 KDRERFTEQGDAITFESEVDKIYLSTPTKIAILDHEKKRTFVIRKDGLADAVVWNPWDKK 252

Query:   200 AKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQEISAVPSSYCSGQLDPKKVFQ 259
             +K ++D GD++YKHMLCVEAA +E+PI LKPGEEW+GR E+SAVPSSY SGQLDPKKV +
Sbjct:   253 SKTISDLGDEDYKHMLCVEAAAIERPITLKPGEEWKGRLELSAVPSSYSSGQLDPKKVLE 312

GO:0003824 "catalytic activity" evidence=IEA

GO:0004034 "aldose 1-epimerase activity" evidence=ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006012 "galactose metabolic process" evidence=ISS

GO:0016853 "isomerase activity" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR\|locus:2145748 AT5G14500 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2084233 AT3G01590 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082842 AT3G61610 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2128519 AT4G23730 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2117572 AT4G25900 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000045178 AN10222 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KQJ7 VC_2001 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_2001 VC_2001 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

FB\|FBgn0028540 CG9008 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40784	AAPC_CENCI	5, ., 1, ., 3, ., 1, 5	0.7615	0.9157	0.7264	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.1.3.3	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031339001	SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (314 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034293001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (498 aa)	•	0.899
	GSVIVG00030550001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (581 aa)	•	0.899
	GSVIVG00022229001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (523 aa)	•	0.899
	GSVIVG00016656001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (470 aa)	•	0.899
	GSVIVG00015125001	RecName- Full=Glucose-6-phosphate isomerase; EC=5.3.1.9; (623 aa)	•	0.899
	GSVIVG00014624001	RecName- Full=Glucose-6-phosphate isomerase; EC=5.3.1.9; (340 aa)	•	0.899
	GSVIVG00014427001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (485 aa)	•	0.899
	GSVIVG00010644001	SubName- Full=Chromosome chr7 scaffold_275, whole genome shotgun sequence; (479 aa)	•	0.899
	GSVIVG00010600001	SubName- Full=Chromosome chr16 scaffold_271, whole genome shotgun sequence; (621 aa)	•	0.899
	GSVIVG00038435001	SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (620 aa)	•	0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		261
cd09020		269	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate	4e-92
pfam01263		301	pfam01263, Aldose_epim, Aldose 1-epimerase	5e-56
COG0676		287	COG0676, COG0676, Uncharacterized enzymes related	3e-44
cd09025		271	cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase,	6e-15
cd01081		284	cd01081, Aldose_epim, aldose 1-epimerase superfami	3e-09
COG2017		308	COG2017, GalM, Galactose mutarotase and related en	8e-09
cd09024		288	cd09024, Aldose_epim_lacX, Aldose 1-epimerase, sim	4e-06

>gnl\|CDD\|185697 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like	Back alignment and domain information

 Score =  272 bits (697), Expect = 4e-92
 Identities = 102/224 (45%), Positives = 125/224 (55%), Gaps = 11/224 (4%)

Query: 19  QFVEFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQ-ACVDLILKHSEEEVKIWPHRY 77
            F     +  L  HGFAR+R+W +         +       V L L  ++E   IWPH +
Sbjct: 56  WFGPHGPNADLPAHGFARTRLWELL------EVSEDEDGVTVSLELDDTDETRAIWPHAF 109

Query: 78  EFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLD 137
           E RL +TLG      L   +  TNT  K F+FT A HTYF VSDI +VRVEGLE   YLD
Sbjct: 110 ELRLTVTLGFDT---LELELTVTNTGDKPFSFTAALHTYFRVSDIEQVRVEGLEGATYLD 166

Query: 138 NLKDKERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWD 197
            L D+     QG A+TF+ EVD+VYL+TP  + I D    R   + K G P AVVWNPW 
Sbjct: 167 KLTDQRE-KVQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRIRIEKSGSPSAVVWNPWI 225

Query: 198 KKAKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQEIS 241
           +KA  MADF DD Y+ M+CVEAA V  P+ L PGE     Q IS
Sbjct: 226 EKAARMADFPDDGYRRMVCVEAANVADPVTLAPGESHTLSQTIS 269

D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P. Length = 269

>gnl\|CDD\|216397 pfam01263, Aldose_epim, Aldose 1-epimerase	Back alignment and domain information

>gnl\|CDD\|223748 COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|185702 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, similar to Synechocystis Slr1438	Back alignment and domain information

>gnl\|CDD\|185695 cd01081, Aldose_epim, aldose 1-epimerase superfamily	Back alignment and domain information

>gnl\|CDD\|224928 COG2017, GalM, Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|185701 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, similar to Lactococcus lactis lacX	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		261
KOG1594		305	consensus Uncharacterized enzymes related to aldos	100.0
cd09020		269	D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-	100.0
COG0676		287	Uncharacterized enzymes related to aldose 1-epimer	100.0
cd09025		271	Aldose_epim_Slr1438 Aldose 1-epimerase, similar to	100.0
cd09021		273	Aldose_epim_Ec_YphB aldose 1-epimerase, similar to	100.0
cd09024		288	Aldose_epim_lacX Aldose 1-epimerase, similar to La	100.0
cd01081		284	Aldose_epim aldose 1-epimerase superfamily. Aldose	100.0
PRK15172		300	putative aldose-1-epimerase; Provisional	100.0
cd09022		284	Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to	100.0
PF01263		300	Aldose_epim: Aldose 1-epimerase; InterPro: IPR0081	99.97
cd09019		326	galactose_mutarotase_like galactose mutarotase_lik	99.96
COG2017		308	GalM Galactose mutarotase and related enzymes [Car	99.96
PLN00194		337	aldose 1-epimerase; Provisional	99.95
TIGR02636		335	galM_Leloir galactose mutarotase. Members of this	99.94
PRK11055		342	galM galactose-1-epimerase; Provisional	99.92
PTZ00485		376	aldolase 1-epimerase; Provisional	99.88
cd09023		284	Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar t	99.81
KOG1604		353	consensus Predicted mutarotase [Carbohydrate trans	99.64
cd09269		293	deoxyribose_mutarotase deoxyribose mutarotase_like	99.24
PF14486		302	DUF4432: Domain of unknown function (DUF4432); PDB	98.91
PF09095		278	DUF1926: Domain of unknown function (DUF1926); Int	86.82

>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=1.7e-62  Score=408.67  Aligned_cols=246  Identities=67%  Similarity=1.154  Sum_probs=231.0

Q ss_pred             CCccccCCC-CCCCCcceEEcccccCCCCCCCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCCcceEE
Q 024857            1 MGKNCFFLV-ARPLLRIQSQFVEFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEF   79 (261)
Q Consensus         1 ~~~~~~~~~-~~~rgG~PvlFP~fg~~~~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l   79 (261)
                      ||.-+.|++ .+||||||+|||+||..+.+++|||||++.|+++....+++  +-+.+.|.|.|.+++++++.|||.|++
T Consensus        59 ~S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qHGFaRn~~W~v~~~p~~lp--~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~  136 (305)
T KOG1594|consen   59 VSTKAIFKPPKPIRGGIPICFPQFGNFGSLPQHGFARNRFWEVENNPPPLP--SLGKATVDLILKSSEDDLKIWPHSFEL  136 (305)
T ss_pred             echhhhcCCCCcccCCcceEeeccCCCCcccccccccceeeEeccCCCCCC--cCCceeEEEEecCChhhhhhCCcceEE
Confidence            566788888 78999999999999999999999999999999998865554  224588999999999999999999999


Q ss_pred             EEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCcceeEEecCCCCceeeCCCCcceeeeeCCeeeecCCCC
Q 024857           80 RLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVD  159 (261)
Q Consensus        80 ~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~~~l~~~gl~~~~~~d~l~~~~~~~~~~~~~~l~~~~D  159 (261)
                      ++++.|.+ +.|+++.+|+|+  +++|+.|++++|+||+++|+.+++++||++.+|+|++....++.++.+.++|++++|
T Consensus       137 ~lrv~l~~-g~Lt~~~rV~Nt--d~KpFsF~~alHtYf~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~D  213 (305)
T KOG1594|consen  137 RLRVSLGD-GELTLTSRVRNT--DSKPFSFSFALHTYFRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVD  213 (305)
T ss_pred             EEEEEEcC-CceEEEEEeecC--CCCceEEEeEeeeeEeecccceEEEeccccccccccccchhhccccCceEeecccee
Confidence            99999996 899999999999  999999999999999999999999999999999998877777888889999999999


Q ss_pred             eEEeCCCCeEEEEeCCCCcEEEEEECCCCcEEEeCCcccccccccCCCCCCccceEEeccCccCCCEEeCCCCEEEEEEE
Q 024857          160 KVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQE  239 (261)
Q Consensus       160 ~vy~~~~~~~~l~d~~~~~~i~i~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~~~~~~L~PGe~~~~~~~  239 (261)
                      ++|++.+.++.|.|-.++++|.|...|+|+.||||||.+++++|+||++++|+.|+|||++.++.+++|+||++|++.+.
T Consensus       214 rvYl~tp~e~aI~dh~~krti~l~k~g~pDaVVWNPW~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q~  293 (305)
T KOG1594|consen  214 RVYLNTPTELAIFDHEKKRTIVLKKEGLPDAVVWNPWDKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQL  293 (305)
T ss_pred             eEEecCCceEEEEEeccccEEEEeccCCCceEEeChhHhhhhhhhhccccccceeEEecccccCCceeecCCccceeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCCC
Q 024857          240 ISAVPSSYCSGQ  251 (261)
Q Consensus       240 i~~~~~~~~~~~  251 (261)
                      +.+..++|||||
T Consensus       294 Lsiv~s~~~s~q  305 (305)
T KOG1594|consen  294 LSIVPSSYCSGQ  305 (305)
T ss_pred             EEEeecccccCC
Confidence            999999999997

>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like	Back alignment and domain information

>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438	Back alignment and domain information

>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB	Back alignment and domain information

>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX	Back alignment and domain information

>cd01081 Aldose_epim aldose 1-epimerase superfamily	Back alignment and domain information

>PRK15172 putative aldose-1-epimerase; Provisional	Back alignment and domain information

>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR	Back alignment and domain information

>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5	Back alignment and domain information

>cd09019 galactose_mutarotase_like galactose mutarotase_like	Back alignment and domain information

>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN00194 aldose 1-epimerase; Provisional	Back alignment and domain information

>TIGR02636 galM_Leloir galactose mutarotase	Back alignment and domain information

>PRK11055 galM galactose-1-epimerase; Provisional	Back alignment and domain information

>PTZ00485 aldolase 1-epimerase; Provisional	Back alignment and domain information

>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013	Back alignment and domain information

>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like	Back alignment and domain information

>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A	Back alignment and domain information

>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		261
2ciq_A		297	Structure-Based Functional Annotation: Yeast Ymr099		1e-17
2cir_A		297	Structure-Based Functional Annotation: Yeast Ymr099		1e-17
2hta_A		309	Crystal Structure Of A Putative Mutarotase (Yead) F		9e-11
1jov_A		270	Crystal Structure Analysis Of Hi1317 Length = 270		9e-08

>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase Length = 297

Back alignment and structure

Iteration: 1

Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 93/216 (43%), Gaps = 16/216 (7%) Query: 29 LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILK---HSEEEVKIWPHRYEFRLRITL 85 L +HG AR+ W + V LK + E K+WP Y L + L Sbjct: 79 LPQHGLARNSTWEF------LGQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVEL 132 Query: 86 GPGGDLMLTSRIRNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGLETLDYLDNLKDKERF 145 G D + T+ + K + DI V L + D L KE + Sbjct: 133 G--SDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESY 189 Query: 146 TEQGDAITFESEVDKVY--LSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAM 203 ++ +TF E D +Y +S I I+D + + L++ LPD VVWNPW +K++ M Sbjct: 190 VDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLPDTVVWNPWIEKSQGM 248 Query: 204 ADFGDDE-YKHMLCVEAACVEKPIILKPGEEWRGRQ 238 ADF Y+ M+C+E V I L PG++W Q Sbjct: 249 ADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQ 284

PyMOL of 2ciq

>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase. Complex With Glucose-6-Phosphate Length = 297

Back alignment and structure

>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From Salmonella Typhimurium In Orthorhombic Form Length = 309

Back alignment and structure

>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317 Length = 270

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		261
2cir_A		297	Hexose-6-phosphate mutarotase; hypothetical protei	8e-73
2hta_A		309	Putative enzyme related to aldose 1-epimerase; car	1e-69
1jov_A		270	HI1317; hypothetical protein, structure 2 function	2e-56
3k25_A		289	SLR1438 protein; structural genomics, PSI-2, prote	3e-54
3dcd_A		307	Galactose mutarotase related enzyme; Q5FKD7 LAR33	9e-31
3q1n_A		294	Galactose mutarotase related enzyme; structural ge	2e-28
3os7_A		341	Galactose mutarotase-like protein; structural geno	2e-17
3nre_A		291	Aldose 1-epimerase; structural genomics, joint cen	2e-14
3mwx_A		326	Aldose 1-epimerase; structural genomics, joint cen	3e-14
3ty1_A		384	Hypothetical aldose 1-epimerase; supersandwich, st	4e-05

>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Length = 297	Back alignment and structure

 Score =  223 bits (570), Expect = 8e-73
 Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 14/230 (6%)

Query: 27  GSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKH---SEEEVKIWPHRYEFRLRI 83
             L +HG AR+  W              +   V   LK    + E  K+WP  Y   L +
Sbjct: 77  SKLPQHGLARNSTWEFL------GQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTV 130

Query: 84  TLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKE 143
            LG    L     + NT++  K   F + +HTYF + DI    V  L  +   D L  KE
Sbjct: 131 ELGSDY-LKTAIEVENTSSS-KELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQL-LKE 187

Query: 144 RFTEQGDAITFESEVDKVYLSTPTKIAILDHER-KRTFVLRKDGLPDAVVWNPWDKKAKA 202
            + ++   +TF  E D +Y +   + AI   ++  +   L++  LPD VVWNPW +K++ 
Sbjct: 188 SYVDKHPVVTFNQETDVIYQNVSAERAIQIVDKGVQIHTLKRYNLPDTVVWNPWIEKSQG 247

Query: 203 MADFGDDE-YKHMLCVEAACVEKPIILKPGEEWRGRQEISAVPSSYCSGQ 251
           MADF     Y+ M+C+E   V   I L PG++W   Q +      Y + Q
Sbjct: 248 MADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQLLCKEELKYQAIQ 297

PyMOL of 2cir

>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Length = 309	Back alignment and structure

>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Length = 270	Back alignment and structure

>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Length = 289	Back alignment and structure

>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Length = 307	Back alignment and structure

>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Length = 294	Back alignment and structure

>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Length = 341	Back alignment and structure

>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Length = 291	Back alignment and structure

>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Length = 326	Back alignment and structure

>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Length = 384	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		261
2cir_A		297	Hexose-6-phosphate mutarotase; hypothetical protei	100.0
2hta_A		309	Putative enzyme related to aldose 1-epimerase; car	100.0
1jov_A		270	HI1317; hypothetical protein, structure 2 function	100.0
3k25_A		289	SLR1438 protein; structural genomics, PSI-2, prote	100.0
3q1n_A		294	Galactose mutarotase related enzyme; structural ge	100.0
3dcd_A		307	Galactose mutarotase related enzyme; Q5FKD7 LAR33	100.0
3mwx_A		326	Aldose 1-epimerase; structural genomics, joint cen	100.0
3os7_A		341	Galactose mutarotase-like protein; structural geno	100.0
3nre_A		291	Aldose 1-epimerase; structural genomics, joint cen	100.0
1yga_A		342	Hypothetical 37.9 kDa protein in BIO3-HXT17 interg	100.0
1snz_A		344	Aldose 1-epimerase; mutarotase, galactosemia, isom	100.0
1lur_A		339	Aldose 1-epimerase; vitamin B12, methyltransferase	99.97
1nsx_A		347	Galactose mutarotase; epimerase, galactose metabol	99.97
3imh_A		338	Galactose-1-epimerase; structural genomics, PSI-2,	99.96
1z45_A		699	GAL10 bifunctional protein; epimerase, mutarotase,	99.96
3ty1_A		384	Hypothetical aldose 1-epimerase; supersandwich, st	99.79

>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A*	Back alignment and structure

Probab=100.00  E-value=6.8e-47  Score=333.81  Aligned_cols=233  Identities=30%  Similarity=0.551  Sum_probs=195.0

Q ss_pred             CccccCCC-CCCCCcceEEcccccCCC------CCCCceeeecCCcEEecCCCCCCCCCCCceEEEEEecC---Chhhhc
Q 024857            2 GKNCFFLV-ARPLLRIQSQFVEFANHG------SLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKH---SEEEVK   71 (261)
Q Consensus         2 ~~~~~~~~-~~~rgG~PvlFP~fg~~~------~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~---~~~~~~   71 (261)
                      ++.++|.. .++|||+|+||||||+..      ++++|||+|++.|++++..      +++..+++|+|.+   ++++++
T Consensus        45 ~~~~~~~~~~~~~GGip~l~P~~gr~~~~~~~y~l~~HGfar~~~W~v~~~~------~~~~~~v~l~l~s~~~~~~~~~  118 (297)
T 2cir_A           45 STAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSKLPQHGLARNSTWEFLGQT------KENPPTVQFGLKPEIANPELTK  118 (297)
T ss_dssp             CTTCCCSSSSCCSBSBCEEBSCSSCCSSSTTGGGSCTTBSGGGSBCEEEEEE------EETTEEEEEEECGGGSCHHHHH
T ss_pred             CcHHHhcCCCCccCCCCEEEEecCCCCCCcccCCCCCccccCCCceEEEeec------cCCceEEEEEecCCCCCHHHHh
Confidence            35566665 668999999999999985      6899999999999998651      1123679999998   788899


Q ss_pred             cCCcceEEEEEEEEcCCCeEEEEEEEEecCCC-CeeEEEeeeeceeeecCCcceeEEecCCCCceeeCCCCcceeeeeCC
Q 024857           72 IWPHRYEFRLRITLGPGGDLMLTSRIRNTNTD-GKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGD  150 (261)
Q Consensus        72 ~~P~~f~l~~ty~L~~~~~L~i~~~v~N~n~~-~~~~pf~~g~HpYF~v~~~~~l~~~gl~~~~~~d~l~~~~~~~~~~~  150 (261)
                      +|||+|+++++|+|++ ++|+|+|+++|+  + +++|||++|+||||+++++.++.+.|+.+..++|.... .......+
T Consensus       119 g~P~~~~~~vty~L~~-~~L~i~~~~~N~--~~d~~~~~~~~~H~YFnl~~~~~~~~~gv~~~~~~d~~~~-~~~~~~~~  194 (297)
T 2cir_A          119 LWPMDYLLILTVELGS-DYLKTAIEVENT--SSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLLK-ESYVDKHP  194 (297)
T ss_dssp             HSCCCCEEEEEEEECS-SEEEEEEEEECC--CSSCCEEEEEEECCEEECSCGGGEEEESCTTCEEEETTTT-EEEECCSS
T ss_pred             hCCCcEEEEEEEEEcC-CEEEEEEEEEcC--CCCcceEEeeecCceEeCCCccceEEecCCCCccEeccCC-ccccccCC
Confidence            9999999999999998 899999999999  9 99999999999999999887888888876568886532 23232345


Q ss_pred             eeeecCCCCeEEeCCC--CeEEEEeCCCCcEEEEEECCCCcEEEeCCcccccccccCC-CCCCccceEEeccCccCCCEE
Q 024857          151 AITFESEVDKVYLSTP--TKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADF-GDDEYKHMLCVEAACVEKPII  227 (261)
Q Consensus       151 ~~~l~~~~D~vy~~~~--~~~~l~d~~~~~~i~i~~~~~~~~vvw~p~~~~~~~~~d~-~~~~~~~~vCvEp~~~~~~~~  227 (261)
                      .+.+..++|++|....  ..++|.++ +++.|+|.++++|++|||||+.++++.|.|+ ++++|++|||||||+..+.++
T Consensus       195 ~~~~~~~~D~~~~~~~~~~~~~l~~~-~g~~l~v~~~~~p~~~v~t~~~~~~~~~~~~~~~~~~~~~vClEp~~~~~~~~  273 (297)
T 2cir_A          195 VVTFNQETDVIYQNVSAERAIQIVDK-GVQIHTLKRYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFIS  273 (297)
T ss_dssp             SBCCSSCEEEEECCCCTTCCEEEEET-TEEEEEEEEESCCEEEEEECHHHHHHHCTTCCSTTGGGGEEEEEEEEEEEEEE
T ss_pred             ccccCCccceEEeCCCCCccEEEEcC-CCCEEEEEecCCCcEEEECcchhhccccccCCCccccccEEEECceECCCCEE
Confidence            6777788999997654  57899999 9999999998899999999976556677777 677889999999999777799


Q ss_pred             eCCCCEEEEEEEEEEeec
Q 024857          228 LKPGEEWRGRQEISAVPS  245 (261)
Q Consensus       228 L~PGe~~~~~~~i~~~~~  245 (261)
                      |+|||+++.+++|++...
T Consensus       274 L~pGe~~~~~~~~~~~~~  291 (297)
T 2cir_A          274 LAPGKKWNAYQLLCKEEL  291 (297)
T ss_dssp             ECTTCEEEEEEEEECC--
T ss_pred             ECCCCeEEEEEEEEEEec
Confidence            999999999999999643

PyMOL of 2cir

>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A	Back alignment and structure

>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7	Back alignment and structure

>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP}	Back alignment and structure

>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei}	Back alignment and structure

>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus}	Back alignment and structure

>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis}	Back alignment and structure

>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum}	Back alignment and structure

>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli}	Back alignment and structure

>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A*	Back alignment and structure

>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4	Back alignment and structure

>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A*	Back alignment and structure

>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus}	Back alignment and structure

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2	Back alignment and structure

>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		261
d1jova_		269	b.30.5.7 (A:) Hypothetical protein HI1317 {Haemoph	5e-55

>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Length = 269	Back information, alignment and structure


class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]

 Score =  176 bits (446), Expect = 5e-55
 Identities = 55/226 (24%), Positives = 85/226 (37%), Gaps = 29/226 (12%)

Query: 15  RIQSQFVEFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWP 74
            +   +  F        HG AR R+W +       S    S   V L       E+    
Sbjct: 72  GVPICYPWFGGVK-QPAHGTARIRLWQL-------SHYYISVHKVRLEF-----ELFSDL 118

Query: 75  HRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLD 134
           +  E ++         ++ T +   T T     +   A HTYF + DI++V V+GL    
Sbjct: 119 NIIEAKVS--------MVFTDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETC 170

Query: 135 YLDNLKDKERFTEQGDAITFESEVDKVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWN 194
           +    + +E              VD +Y +   +  ILD    RT  L        V+WN
Sbjct: 171 FNSLNQQQE---NVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWN 227

Query: 195 PWDKKAKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQEI 240
           PW KK   M++ G   Y+ MLC+E A +     L+ GE       +
Sbjct: 228 PWHKKTSGMSETG---YQKMLCLETARIHHL--LEFGESLSVEISL 268

PyMOL of d1jova_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		261
d1jova_		269	Hypothetical protein HI1317 {Haemophilus influenza	100.0
d1z45a1		342	Galactose mutarotase {Baker's yeast (Saccharomyces	99.9
d1lura_		329	Aldose 1-epimerase homologue {Nematode (Caenorhabd	99.9
d1nsza_		340	Galactose mutarotase {Lactococcus lactis [TaxId: 1	99.89
d1so0a_		344	Galactose mutarotase {Human (Homo sapiens) [TaxId:	99.86

>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=1.7e-47  Score=331.18  Aligned_cols=212  Identities=23%  Similarity=0.330  Sum_probs=169.9

Q ss_pred             CCccccCCC-CCCCCcceEEcccccCCCCCCCceeeecCCcEEecCCCCCCCCCCCceEEEEEecCChhhhccCCcceEE
Q 024857            1 MGKNCFFLV-ARPLLRIQSQFVEFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEF   79 (261)
Q Consensus         1 ~~~~~~~~~-~~~rgG~PvlFP~fg~~~~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l   79 (261)
                      +|+.+.|+. .+|||||||||||||+. ++|+|||||++.|+|++..       ++...+.+++.     ...|||.|++
T Consensus        57 ~s~~a~~~~~~~IRGGiPi~fP~fG~~-~~p~HGFAR~~~w~l~~~~-------~~~~~~~l~~~-----l~~~~~~f~~  123 (269)
T d1jova_          57 LSEVEPFKNGNAIRGGVPICYPWFGGV-KQPAHGTARIRLWQLSHYY-------ISVHKVRLEFE-----LFSDLNIIEA  123 (269)
T ss_dssp             BCTTCCCCTTSCCSBSCCEEBSSCGGG-SSSTTBSGGGSBCEEEEEE-------EETTEEEEEEE-----EECTTSCEEE
T ss_pred             eCChhhccCCCcccCCcceeCcccCCC-CCCCCccccccceEEEEEe-------cCCceEEEEEE-----eccCCCcceE
Confidence            477888888 77999999999999985 4799999999999999873       12333444332     2458899999


Q ss_pred             EEEEEEcCCCeEEEEEEEEecCCCCeeEEEeeeeceeeecCCcceeEEecCCCCceeeCCCCcceeeeeCCeeeecCCCC
Q 024857           80 RLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVD  159 (261)
Q Consensus        80 ~~ty~L~~~~~L~i~~~v~N~n~~~~~~pf~~g~HpYF~v~~~~~l~~~gl~~~~~~d~l~~~~~~~~~~~~~~l~~~~D  159 (261)
                      +++|+|+-      +++++|+  +.++|||++|+||||++++..++.+.|+.+..|.+. ....  ....+.+.+.+++|
T Consensus       124 ~~~~~ltl------~~~l~n~--~~~~~pf~~g~HpyF~v~d~~~~~v~gl~~~~~~~~-~~~~--~~~~~~~~~~~~~D  192 (269)
T d1jova_         124 KVSMVFTD------KCHLTFT--HYGEESAQAALHTYFNIGDINQVEVQGLPETCFNSL-NQQQ--ENVPSPRHISENVD  192 (269)
T ss_dssp             EEEEEESS------SEEEEEE--ECCSSCEEEEECCEEECSCGGGEEEESCCSEEEETT-TTEE--EECCSSBCCSSCEE
T ss_pred             EEEEEecc------EEEEEEc--cCCCccceecccceEecCCccceEEecCCccccccc-cccc--cccCCCcccCcCee
Confidence            99998863      2445666  667899999999999999999999999987555443 2222  22244577788999


Q ss_pred             eEEeCCCCeEEEEeCCCCcEEEEEECCCCcEEEeCCcccccccccCCCCCCccceEEeccCccCCCEEeCCCCEEEEEEE
Q 024857          160 KVYLSTPTKIAILDHERKRTFVLRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAACVEKPIILKPGEEWRGRQE  239 (261)
Q Consensus       160 ~vy~~~~~~~~l~d~~~~~~i~i~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~~vCvEp~~~~~~~~L~PGe~~~~~~~  239 (261)
                      ++|.+.+..+.|.|+..+++|+|+.++++++||||||.++++.   |.+++|++||||||++..  .+|+|||+|+++++
T Consensus       193 ~i~~~~~~~~~i~d~~~~~~i~v~~~g~~~~vVWnP~~~~a~~---~~d~~~~~fvCVEp~~~~--~~L~PGes~~~~~~  267 (269)
T d1jova_         193 CIYSAENMQNQILDKSFNRTIALHHHNASQFVLWNPWHKKTSG---MSETGYQKMLCLETARIH--HLLEFGESLSVEIS  267 (269)
T ss_dssp             EEEECSSSEEEEEETTTTEEEEEEEESCSEEEEEECTTSCCTT---CCTTGGGGEEEEEEEEEE--EEECTTCEEEEEEE
T ss_pred             EEecCCCCcEEEEeCCCCCEEEEEEeCCCcEEEECCccchhcc---ccccCCCCEEEECcccCC--ceECCCCeEEEEEE
Confidence            9999988899999999999999999999999999999887654   455779999999998764  47999999999988


Q ss_pred             EE
Q 024857          240 IS  241 (261)
Q Consensus       240 i~  241 (261)
                      |+
T Consensus       268 ir  269 (269)
T d1jova_         268 LK  269 (269)
T ss_dssp             EC
T ss_pred             EC
Confidence            74

PyMOL of d1jova_

>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure